Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045030 | Msa0045080 | 0.822431 | 2.377354e-53 | -8.615850e-47 |
| Msa0045080 | Msa0045090 | 0.877359 | 6.695037e-69 | -8.615850e-47 |
| Msa0045080 | Msa0045100 | 0.807122 | 5.898127e-50 | -8.615850e-47 |
| Msa0045080 | Msa0045120 | 0.838395 | 2.949745e-57 | -8.615850e-47 |
| Msa0045080 | Msa0045140 | 0.845749 | 3.345154e-59 | -8.615850e-47 |
| Msa0045080 | Msa0045150 | 0.854090 | 1.551855e-61 | -8.615850e-47 |
| Msa0045080 | Msa0045160 | 0.805732 | 1.158097e-49 | -8.615850e-47 |
| Msa0045080 | Msa0045190 | 0.860819 | 1.582871e-63 | -8.615850e-47 |
| Msa0045080 | Msa0045350 | 0.850614 | 1.515077e-60 | -8.615850e-47 |
| Msa0045080 | Msa0045370 | 0.842526 | 2.449925e-58 | -8.615850e-47 |
| Msa0045080 | Msa0045400 | 0.816155 | 6.396282e-52 | -8.615850e-47 |
| Msa0045080 | Msa0045440 | 0.834450 | 2.976537e-56 | -8.615850e-47 |
| Msa0045080 | Msa0484480 | 0.824671 | 7.114922e-54 | -8.615850e-47 |
| Msa0045080 | Msa1084980 | 0.988151 | 6.593686e-173 | -8.615850e-47 |
| Msa0045080 | Msa1085000 | 0.868083 | 8.499987e-66 | -8.615850e-47 |
| Msa0045080 | Msa1426790 | 0.832374 | 9.801910e-56 | -8.615850e-47 |
| Msa0045080 | Msa1426820 | 0.809639 | 1.713093e-50 | -8.615850e-47 |
| Msa0045080 | Msa1426840 | 0.827497 | 1.514014e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045080 | MtrunA17_Chr6g0469931 | 34.440 | 241 | 146 | 3 | 1 | 236 | 1 | 234 | 3.23e-40 | 152 |
| Msa0045080 | MtrunA17_Chr2g0304051 | 62.626 | 99 | 35 | 1 | 237 | 335 | 13 | 109 | 5.25e-35 | 125 |
| Msa0045080 | MtrunA17_Chr7g0259081 | 34.118 | 170 | 109 | 3 | 6 | 174 | 5 | 172 | 6.90e-23 | 95.1 |
| Msa0045080 | MtrunA17_Chr3g0093401 | 32.512 | 203 | 129 | 2 | 7 | 209 | 7 | 201 | 1.14e-22 | 96.3 |
| Msa0045080 | MtrunA17_Chr7g0234721 | 33.529 | 170 | 110 | 3 | 6 | 174 | 5 | 172 | 3.10e-20 | 90.1 |
| Msa0045080 | MtrunA17_Chr4g0010241 | 32.278 | 158 | 107 | 0 | 38 | 195 | 56 | 213 | 3.42e-18 | 83.2 |
| Msa0045080 | MtrunA17_Chr6g0469811 | 35.507 | 138 | 84 | 2 | 2 | 139 | 15 | 147 | 1.03e-17 | 80.1 |
| Msa0045080 | MtrunA17_Chr1g0206481 | 27.536 | 207 | 146 | 4 | 16 | 220 | 16 | 220 | 3.37e-16 | 79.0 |
| Msa0045080 | MtrunA17_Chr4g0077081 | 29.932 | 147 | 96 | 1 | 216 | 362 | 28 | 167 | 5.75e-16 | 75.5 |
| Msa0045080 | MtrunA17_Chr2g0279021 | 21.377 | 276 | 184 | 4 | 161 | 405 | 1 | 274 | 5.45e-13 | 70.1 |
| Msa0045080 | MtrunA17_Chr2g0309041 | 37.500 | 96 | 58 | 2 | 45 | 139 | 1 | 95 | 5.87e-12 | 62.0 |
| Msa0045080 | MtrunA17_Chr5g0423441 | 28.272 | 191 | 129 | 6 | 36 | 220 | 32 | 220 | 3.68e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045080 | AT1G52950.1 | 25.000 | 396 | 247 | 12 | 20 | 373 | 22 | 409 | 6.29e-16 | 80.5 |
| Msa0045080 | AT2G05642.1 | 30.065 | 153 | 68 | 2 | 19 | 171 | 19 | 132 | 2.61e-12 | 68.9 |
Find 121 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGAGTGAAAAGGGATTT+AGG | 0.171986 | 1_1:-76763449 | None:intergenic |
| CTCTCGCCAAAATCTCATTT+TGG | 0.195497 | 1_1:+76763545 | Msa0045080:five_prime_UTR |
| GCTAAAATCAAAATGTTTCT+TGG | 0.216618 | 1_1:+76765210 | Msa0045080:CDS |
| GCTGATGCTGCTTGAGCTTT+TGG | 0.225529 | 1_1:+76764993 | Msa0045080:CDS |
| ACTGAACCAAAATGAGATTT+TGG | 0.228436 | 1_1:-76763551 | None:intergenic |
| CCGTCCACCTTGAAATTAAA+TGG | 0.241894 | 1_1:-76766104 | None:intergenic |
| TCAGAGTGATTGTGACTTCT+TGG | 0.262787 | 1_1:+76764812 | Msa0045080:CDS |
| CCTCAATTTCAGTCATTGTT+TGG | 0.266991 | 1_1:+76766496 | Msa0045080:CDS |
| AGACAACACAACCTTCAATT+TGG | 0.267550 | 1_1:-76765148 | None:intergenic |
| TCGCCGTATTCTCTCATCTT+TGG | 0.280211 | 1_1:-76765880 | None:intergenic |
| TGAGAGTGAAAAGGGATTTA+GGG | 0.295282 | 1_1:-76763448 | None:intergenic |
| CTCAATTTCAGTCATTGTTT+GGG | 0.302397 | 1_1:+76766497 | Msa0045080:CDS |
| AGTGAATTGAAAATGGATTT+AGG | 0.305820 | 1_1:-76763490 | None:intergenic |
| ATTCCGTACAACTCGAAAAC+TGG | 0.325730 | 1_1:-76764655 | None:intergenic |
| GCAAAGTTTACTGTCTTTGA+TGG | 0.325831 | 1_1:+76766237 | Msa0045080:CDS |
| AAACTTCCCATCTTCAATAA+TGG | 0.328623 | 1_1:-76765953 | None:intergenic |
| TTTCGAGTTGTACGGAATTT+GGG | 0.337570 | 1_1:+76764660 | Msa0045080:CDS |
| TCAACTTTGATAGGCGATAA+TGG | 0.340722 | 1_1:+76766063 | Msa0045080:CDS |
| AGGAGTTAGTTCACCTGTTT+CGG | 0.341397 | 1_1:+76764598 | Msa0045080:CDS |
| TGTATAGGGATGTAGGATTC+AGG | 0.358257 | 1_1:+76764563 | Msa0045080:intron |
| ATAGAAGTGAGGTTGAAAAT+TGG | 0.377432 | 1_1:+76764359 | Msa0045080:CDS |
| TTGATCATTGATCTGTTCAA+TGG | 0.386511 | 1_1:+76766610 | Msa0045080:CDS |
| CTTGACTCCATTATTGAAGA+TGG | 0.387075 | 1_1:+76765946 | Msa0045080:CDS |
| GAGTGAGAGTGAATTGAAAA+TGG | 0.395661 | 1_1:-76763497 | None:intergenic |
| AAATTGAAGGTTGTGTTGTC+TGG | 0.395927 | 1_1:+76765150 | Msa0045080:CDS |
| ATGAATTCCATTTAATTTCA+AGG | 0.396715 | 1_1:+76766097 | Msa0045080:CDS |
| ATTAATTTGTATAGGGATGT+AGG | 0.397678 | 1_1:+76764556 | Msa0045080:intron |
| AGTTCAACTATCGTCTTCTT+CGG | 0.398079 | 1_1:-76765925 | None:intergenic |
| AAATTGGTATCGTACGTCTC+TGG | 0.399090 | 1_1:+76764375 | Msa0045080:CDS |
| GACGCCTCTATCGCCTCTAT+TGG | 0.405399 | 1_1:+76765856 | Msa0045080:CDS |
| GTTCAACTATCGTCTTCTTC+GGG | 0.412056 | 1_1:-76765924 | None:intergenic |
| GAATCGATTGAGAGTGAAAA+GGG | 0.419953 | 1_1:-76763456 | None:intergenic |
| CCCTCAACATTATATTCCAT+TGG | 0.421959 | 1_1:-76764958 | None:intergenic |
| TCTCATCTTTGGACCAATAG+AGG | 0.428156 | 1_1:-76765869 | None:intergenic |
| CGTTGCAGGTTAAGTGTTTG+TGG | 0.430658 | 1_1:+76765823 | Msa0045080:intron |
| AGGTTACATTTAATACGGTC+TGG | 0.432001 | 1_1:-76763522 | None:intergenic |
| TTGTTCGACGATGATCTTAG+TGG | 0.433335 | 1_1:+76766282 | Msa0045080:CDS |
| CGAATGCACTTCCAAATTGA+AGG | 0.434526 | 1_1:+76765137 | Msa0045080:CDS |
| AAGGATGCATCAACTTTGAT+AGG | 0.440539 | 1_1:+76766054 | Msa0045080:CDS |
| CCATTGTTGAGAAAGCTTTG+AGG | 0.447255 | 1_1:+76763606 | Msa0045080:five_prime_UTR |
| TGAACAGTCTCATCCGAAAC+AGG | 0.449471 | 1_1:-76764611 | None:intergenic |
| TGTTTGACTGGATTTATTGA+TGG | 0.463399 | 1_1:+76765988 | Msa0045080:CDS |
| GGTTGTGTTGTCTGGTTGCA+CGG | 0.465831 | 1_1:+76765158 | Msa0045080:CDS |
| AACCTCACTTCTATGCTAAG+AGG | 0.466542 | 1_1:-76764350 | None:intergenic |
| ACAACAATCCAAGGTTGGAT+TGG | 0.468256 | 1_1:-76766557 | None:intergenic |
| ACCGTTATTCGTGTGATTGT+TGG | 0.468424 | 1_1:+76764732 | Msa0045080:CDS |
| TGAATCGATTGAGAGTGAAA+AGG | 0.471410 | 1_1:-76763457 | None:intergenic |
| GATTTATTGATGGTGAAGAT+TGG | 0.471951 | 1_1:+76765998 | Msa0045080:CDS |
| GTTATCTCAGCATGTTTGAC+TGG | 0.474164 | 1_1:+76765976 | Msa0045080:CDS |
| CTTGTCACCATCGTACGAAT+GGG | 0.479220 | 1_1:-76764402 | None:intergenic |
| AGGATCCGGTGTCTTGTGTC+TGG | 0.479776 | 1_1:+76765114 | Msa0045080:CDS |
| AATTGGTATCGTACGTCTCT+GGG | 0.481488 | 1_1:+76764376 | Msa0045080:CDS |
| TTGGTTCCTTTCCTTCGAGA+TGG | 0.481917 | 1_1:+76764295 | Msa0045080:exon |
| GAGAGAGGTTACATTTAATA+CGG | 0.484763 | 1_1:-76763527 | None:intergenic |
| TGATCATTGATCTGTTCAAT+GGG | 0.487875 | 1_1:+76766611 | Msa0045080:CDS |
| CCAAACAATGACTGAAATTG+AGG | 0.488156 | 1_1:-76766496 | None:intergenic |
| CCAATGGAATATAATGTTGA+GGG | 0.494081 | 1_1:+76764958 | Msa0045080:CDS |
| CAAAACAAACACAGCCTCAC+TGG | 0.496304 | 1_1:-76766262 | None:intergenic |
| TTGAACAGATCAATGATCAA+TGG | 0.496477 | 1_1:-76766607 | None:intergenic |
| AACAGGTGAACTAACTCCTC+TGG | 0.502600 | 1_1:-76764594 | None:intergenic |
| ACCAACAATCACACGAATAA+CGG | 0.504989 | 1_1:-76764733 | None:intergenic |
| GCTTGTCACCATCGTACGAA+TGG | 0.506089 | 1_1:-76764403 | None:intergenic |
| TCAGTCTCTCTATCTTGAAA+AGG | 0.515504 | 1_1:+76763674 | Msa0045080:five_prime_UTR |
| TGGTTGCACGGGTGACAAAC+CGG | 0.516255 | 1_1:+76765170 | Msa0045080:CDS |
| GGTTACATTTAATACGGTCT+GGG | 0.518026 | 1_1:-76763521 | None:intergenic |
| AATTTCAGTCATTGTTTGGG+AGG | 0.524248 | 1_1:+76766500 | Msa0045080:CDS |
| GTCTACTTCCAATCCAACCT+TGG | 0.526036 | 1_1:+76766549 | Msa0045080:CDS |
| AGTGATTGTGACTTCTTGGC+TGG | 0.526342 | 1_1:+76764816 | Msa0045080:CDS |
| AAGCTCAAGCAGCATCAGCT+TGG | 0.527989 | 1_1:-76764989 | None:intergenic |
| TTGACTCCATTATTGAAGAT+GGG | 0.530566 | 1_1:+76765947 | Msa0045080:CDS |
| CACGGGTGACAAACCGGTGG+TGG | 0.532517 | 1_1:+76765176 | Msa0045080:CDS |
| GGTCCAAAGATGAGAGAATA+CGG | 0.535881 | 1_1:+76765877 | Msa0045080:CDS |
| TGGACCAATAGAGGCGATAG+AGG | 0.536537 | 1_1:-76765860 | None:intergenic |
| GAGGCGATAGAGGCGTCCGC+AGG | 0.543835 | 1_1:-76765850 | None:intergenic |
| TGACATTCACAACCACCACT+TGG | 0.545120 | 1_1:-76766762 | None:intergenic |
| CTATAACAACAATCCAAGGT+TGG | 0.546056 | 1_1:-76766562 | None:intergenic |
| GCAAAACGAATAACCACCAC+CGG | 0.548865 | 1_1:-76765189 | None:intergenic |
| TTCGTGCCACGAGGTTGAGA+AGG | 0.553860 | 1_1:+76766035 | Msa0045080:CDS |
| TTATTGATGGTGAAGATTGG+TGG | 0.554001 | 1_1:+76766001 | Msa0045080:CDS |
| GTTGTGTTGTCTGGTTGCAC+GGG | 0.556256 | 1_1:+76765159 | Msa0045080:CDS |
| TCATTTACTTAAGAACATGA+AGG | 0.559503 | 1_1:+76766326 | Msa0045080:CDS |
| TTTCGGATGAGACTGTTCAC+TGG | 0.560414 | 1_1:+76764615 | Msa0045080:CDS |
| AACTCTATAACAACAATCCA+AGG | 0.567493 | 1_1:-76766566 | None:intergenic |
| GCCAATGGAATATAATGTTG+AGG | 0.570129 | 1_1:+76764957 | Msa0045080:CDS |
| AACAATGACTGAAATTGAGG+TGG | 0.575647 | 1_1:-76766493 | None:intergenic |
| CATTGATCTGTTCAATGGGA+AGG | 0.576781 | 1_1:+76766615 | Msa0045080:CDS |
| ACCTCGTGGCACGAAAGAGA+AGG | 0.578644 | 1_1:-76766027 | None:intergenic |
| GATTCAGGCGTCGGTTCCAG+AGG | 0.581590 | 1_1:+76764578 | Msa0045080:CDS |
| CCGATAGGGAAAACATTCAA+AGG | 0.582837 | 1_1:+76766465 | Msa0045080:intron |
| ATATGTCCATCTCGAAGGAA+AGG | 0.587641 | 1_1:-76764301 | None:intergenic |
| GAGAAAGCTTTGAGGACGAA+AGG | 0.587787 | 1_1:+76763614 | Msa0045080:five_prime_UTR |
| TAAGAGGAGAACCATCGCTC+AGG | 0.589043 | 1_1:-76764334 | None:intergenic |
| TTGTTGCATAACCTGAGCGA+TGG | 0.596362 | 1_1:+76764323 | Msa0045080:CDS |
| TCTTATCGTGTCACTAACCA+TGG | 0.599932 | 1_1:+76764684 | Msa0045080:CDS |
| CCTCAAAGCTTTCTCAACAA+TGG | 0.599958 | 1_1:-76763606 | None:intergenic |
| GATTGCGATGTCTGAGCCAA+TGG | 0.600349 | 1_1:+76764942 | Msa0045080:CDS |
| TCCTTCTCTTTCGTGCCACG+AGG | 0.603090 | 1_1:+76766026 | Msa0045080:CDS |
| TTGTTGTTATAGAGTTGTGA+AGG | 0.613540 | 1_1:+76766573 | Msa0045080:CDS |
| TGGGAAACCCATTCGTACGA+TGG | 0.614031 | 1_1:+76764395 | Msa0045080:CDS |
| CAGGTCATTCATACGACTCA+AGG | 0.619419 | 1_1:-76764757 | None:intergenic |
| ACAATGACTGAAATTGAGGT+GGG | 0.624167 | 1_1:-76766492 | None:intergenic |
| CTCCTCTTAGCATAGAAGTG+AGG | 0.624186 | 1_1:+76764348 | Msa0045080:CDS |
| CAACAATATGTCCATCTCGA+AGG | 0.625289 | 1_1:-76764306 | None:intergenic |
| GATCATCACATCTCTCGAGA+TGG | 0.626853 | 1_1:+76764427 | Msa0045080:CDS |
| GGGATGTAGGATTCAGGCGT+CGG | 0.630176 | 1_1:+76764569 | Msa0045080:intron |
| AAGTGTTTGTGGAATTCCTG+CGG | 0.635455 | 1_1:+76765834 | Msa0045080:CDS |
| CGGATGAGACTGTTCACTGG+CGG | 0.637362 | 1_1:+76764618 | Msa0045080:CDS |
| AAACGCGATTAAACAGAGAG+AGG | 0.640999 | 1_1:+76763422 | None:intergenic |
| CAAAGCTTTCTCAACAATGG+CGG | 0.646139 | 1_1:-76763603 | None:intergenic |
| GAGGACGAAAGGTACGAAGG+AGG | 0.671680 | 1_1:+76763625 | Msa0045080:five_prime_UTR |
| CAATGGAATATAATGTTGAG+GGG | 0.676558 | 1_1:+76764959 | Msa0045080:CDS |
| TGGTTGTGAATGTCATGCGA+GGG | 0.679998 | 1_1:+76766770 | Msa0045080:CDS |
| TTTGAGGACGAAAGGTACGA+AGG | 0.681630 | 1_1:+76763622 | Msa0045080:five_prime_UTR |
| ATGCATCCTTCTCAACCTCG+TGG | 0.681648 | 1_1:-76766041 | None:intergenic |
| ATTCGCCAGACACAAGACAC+CGG | 0.685353 | 1_1:-76765119 | None:intergenic |
| GTGGTTGTGAATGTCATGCG+AGG | 0.685871 | 1_1:+76766769 | Msa0045080:CDS |
| CAGATGAATCCACAAAACAC+AGG | 0.690035 | 1_1:-76764776 | None:intergenic |
| TGTCTTTGATGGTACCAGTG+AGG | 0.698309 | 1_1:+76766248 | Msa0045080:CDS |
| TTGCACGGGTGACAAACCGG+TGG | 0.708065 | 1_1:+76765173 | Msa0045080:CDS |
| GGTTGTGAATGTCATGCGAG+GGG | 0.726803 | 1_1:+76766771 | Msa0045080:CDS |
| AAAGATGAGAGAATACGGCG+AGG | 0.773481 | 1_1:+76765882 | Msa0045080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATACATAAAAAAAAAAA+TGG | - | chr1_1:76763748-76763767 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTTATGTATTG+TGG | + | chr1_1:76763747-76763766 | Msa0045080:intron | 10.0% |
| !! | TTTATGATAATTAGAATAAT+TGG | + | chr1_1:76764029-76764048 | Msa0045080:intron | 10.0% |
| !! | AACAAAAAAATAATAAGAAA+AGG | - | chr1_1:76765048-76765067 | None:intergenic | 10.0% |
| !!! | TTGTACTTTTTTTTTTTTTT+TGG | + | chr1_1:76765422-76765441 | Msa0045080:intron | 10.0% |
| !!! | TTAACATTTTAATTTCGTTT+CGG | + | chr1_1:76763705-76763724 | Msa0045080:intron | 15.0% |
| !! | TTTACTTATACATTTCTATA+TGG | + | chr1_1:76764175-76764194 | Msa0045080:intron | 15.0% |
| !!! | TTTTAATAGTACTTTATTCT+TGG | + | chr1_1:76764276-76764295 | Msa0045080:intron | 15.0% |
| !!! | ATTTTATTTTTAGATGTCAT+TGG | + | chr1_1:76764913-76764932 | Msa0045080:intron | 15.0% |
| !!! | TTTTTTTATATAGTTATTGC+AGG | + | chr1_1:76765772-76765791 | Msa0045080:intron | 15.0% |
| !!! | TTTATTTTTATTGTACTAAC+AGG | + | chr1_1:76766208-76766227 | Msa0045080:intron | 15.0% |
| !!! | TTTTTTTTTATGTATTGTGG+TGG | + | chr1_1:76763750-76763769 | Msa0045080:intron | 20.0% |
| !!! | TTTTTTTTATGTATTGTGGT+GGG | + | chr1_1:76763751-76763770 | Msa0045080:intron | 20.0% |
| !! | TGTATTTAATATTTGACCTT+TGG | + | chr1_1:76763844-76763863 | Msa0045080:intron | 20.0% |
| !! | TACAGTTAAAAATTCAGATT+TGG | - | chr1_1:76764130-76764149 | None:intergenic | 20.0% |
| !! | TTTAACTGTATTTCAATCAA+AGG | + | chr1_1:76764140-76764159 | Msa0045080:intron | 20.0% |
| !! | TACTTATTTAAAGGACATTT+GGG | - | chr1_1:76764214-76764233 | None:intergenic | 20.0% |
| !! | TGGAATATGTACTTATTTAA+AGG | - | chr1_1:76764223-76764242 | None:intergenic | 20.0% |
| !!! | ATATTTTTTTCCTTTTCTGT+CGG | + | chr1_1:76765298-76765317 | Msa0045080:intron | 20.0% |
| !!! | ATGAATTCCATTTAATTTCA+AGG | + | chr1_1:76766097-76766116 | Msa0045080:CDS | 20.0% |
| !! | CAAAGTATATGAAATAAGTA+TGG | - | chr1_1:76766666-76766685 | None:intergenic | 20.0% |
| !! | AGTGAATTGAAAATGGATTT+AGG | - | chr1_1:76763493-76763512 | None:intergenic | 25.0% |
| !!! | TTTTTTTATGTATTGTGGTG+GGG | + | chr1_1:76763752-76763771 | Msa0045080:intron | 25.0% |
| !! | AGATTCTTTTCAAATTTTGC+AGG | + | chr1_1:76763934-76763953 | Msa0045080:intron | 25.0% |
| !! | TTTTCAAATTTTGCAGGTAT+GGG | + | chr1_1:76763940-76763959 | Msa0045080:intron | 25.0% |
| ! | GTACTTATTTAAAGGACATT+TGG | - | chr1_1:76764215-76764234 | None:intergenic | 25.0% |
| !!! | AGTGTTGGATTAATTTGTAT+AGG | + | chr1_1:76764548-76764567 | Msa0045080:intron | 25.0% |
| !!! | GTGTTGGATTAATTTGTATA+GGG | + | chr1_1:76764549-76764568 | Msa0045080:intron | 25.0% |
| !!! | ATTAATTTGTATAGGGATGT+AGG | + | chr1_1:76764556-76764575 | Msa0045080:intron | 25.0% |
| !! | GGAGAAATTTGAAATAAATC+TGG | - | chr1_1:76765076-76765095 | None:intergenic | 25.0% |
| ! | TTTATTTCAAATTTCTCCCA+TGG | + | chr1_1:76765078-76765097 | Msa0045080:intron | 25.0% |
| ! | GCTAAAATCAAAATGTTTCT+TGG | + | chr1_1:76765210-76765229 | Msa0045080:CDS | 25.0% |
| ! | AATGAAACCTATATGGTAAA+CGG | - | chr1_1:76765268-76765287 | None:intergenic | 25.0% |
| !!! | TATTTTTTTCCTTTTCTGTC+GGG | + | chr1_1:76765299-76765318 | Msa0045080:intron | 25.0% |
| ! | AGTATACATACAATACAACT+TGG | - | chr1_1:76765337-76765356 | None:intergenic | 25.0% |
| ! | AAGTTGTATTGTATGTATAC+TGG | + | chr1_1:76765336-76765355 | Msa0045080:intron | 25.0% |
| !! | CTTAACTTCTAAAAACATCA+AGG | - | chr1_1:76765373-76765392 | None:intergenic | 25.0% |
| !!! | TTTTAGAAGTTAAGAGTGAT+TGG | + | chr1_1:76765379-76765398 | Msa0045080:intron | 25.0% |
| ! | TTTAGAAGTTAAGAGTGATT+GGG | + | chr1_1:76765380-76765399 | Msa0045080:intron | 25.0% |
| !!! | ATTTTATTTGTATTCGTTGC+AGG | + | chr1_1:76765809-76765828 | Msa0045080:intron | 25.0% |
| !! | AATTCCATTTAATTTCAAGG+TGG | + | chr1_1:76766100-76766119 | Msa0045080:intron | 25.0% |
| ! | TCATTTACTTAAGAACATGA+AGG | + | chr1_1:76766326-76766345 | Msa0045080:CDS | 25.0% |
| !!! | TTTTATGTTTGTTGAGACTT+AGG | + | chr1_1:76766689-76766708 | Msa0045080:intron | 25.0% |
| GAGAGAGGTTACATTTAATA+CGG | - | chr1_1:76763530-76763549 | None:intergenic | 30.0% | |
| ! | ACTGAACCAAAATGAGATTT+TGG | - | chr1_1:76763554-76763573 | None:intergenic | 30.0% |
| AAAATGGTAAACATTGCACA+TGG | - | chr1_1:76763732-76763751 | None:intergenic | 30.0% | |
| !!! | TTTTTTATGTATTGTGGTGG+GGG | + | chr1_1:76763753-76763772 | Msa0045080:intron | 30.0% |
| TTCTTGCATTGTTAAACATG+TGG | + | chr1_1:76763795-76763814 | Msa0045080:intron | 30.0% | |
| TCTTGCATTGTTAAACATGT+GGG | + | chr1_1:76763796-76763815 | Msa0045080:intron | 30.0% | |
| ! | CTTTTCAAATTTTGCAGGTA+TGG | + | chr1_1:76763939-76763958 | Msa0045080:intron | 30.0% |
| AAAGATTGTCAATTACTGTC+TGG | - | chr1_1:76764243-76764262 | None:intergenic | 30.0% | |
| ATAGAAGTGAGGTTGAAAAT+TGG | + | chr1_1:76764359-76764378 | Msa0045080:CDS | 30.0% | |
| TAAAAATCAGACGATAACCA+TGG | - | chr1_1:76764704-76764723 | None:intergenic | 30.0% | |
| CCAATGGAATATAATGTTGA+GGG | + | chr1_1:76764958-76764977 | Msa0045080:CDS | 30.0% | |
| CAATGGAATATAATGTTGAG+GGG | + | chr1_1:76764959-76764978 | Msa0045080:CDS | 30.0% | |
| !!! | TTGTCGTTTTCTTTTGCTAT+TGG | + | chr1_1:76765238-76765257 | Msa0045080:intron | 30.0% |
| ACCTTATAAGGTGAATAAGT+GGG | + | chr1_1:76765474-76765493 | Msa0045080:intron | 30.0% | |
| !! | ACAAGGCTTTATTATATGCA+GGG | - | chr1_1:76765523-76765542 | None:intergenic | 30.0% |
| !!! | AGGTTACTGATTTTAGGAAA+AGG | + | chr1_1:76765726-76765745 | Msa0045080:intron | 30.0% |
| ! | TTATTGCAGGTTAGTGTTTT+AGG | + | chr1_1:76765785-76765804 | Msa0045080:intron | 30.0% |
| ! | TATTGCAGGTTAGTGTTTTA+GGG | + | chr1_1:76765786-76765805 | Msa0045080:intron | 30.0% |
| TTGACTCCATTATTGAAGAT+GGG | + | chr1_1:76765947-76765966 | Msa0045080:CDS | 30.0% | |
| AAACTTCCCATCTTCAATAA+TGG | - | chr1_1:76765956-76765975 | None:intergenic | 30.0% | |
| TGTTTGACTGGATTTATTGA+TGG | + | chr1_1:76765988-76766007 | Msa0045080:CDS | 30.0% | |
| !! | GATTTATTGATGGTGAAGAT+TGG | + | chr1_1:76765998-76766017 | Msa0045080:CDS | 30.0% |
| TGCAAAGCATGAAATAAACT+CGG | - | chr1_1:76766164-76766183 | None:intergenic | 30.0% | |
| TGAACAATAGAAAGTGAAAC+AGG | - | chr1_1:76766373-76766392 | None:intergenic | 30.0% | |
| ATTATCCTACTTAAACCGAT+AGG | + | chr1_1:76766450-76766469 | Msa0045080:intron | 30.0% | |
| TTATCCTACTTAAACCGATA+GGG | + | chr1_1:76766451-76766470 | Msa0045080:intron | 30.0% | |
| CTCAATTTCAGTCATTGTTT+GGG | + | chr1_1:76766497-76766516 | Msa0045080:CDS | 30.0% | |
| !!! | TTTGCTTTTTTTGGTGGAAA+AGG | + | chr1_1:76766525-76766544 | Msa0045080:CDS | 30.0% |
| AACTCTATAACAACAATCCA+AGG | - | chr1_1:76766569-76766588 | None:intergenic | 30.0% | |
| ! | TTGTTGTTATAGAGTTGTGA+AGG | + | chr1_1:76766573-76766592 | Msa0045080:CDS | 30.0% |
| TTGAACAGATCAATGATCAA+TGG | - | chr1_1:76766610-76766629 | None:intergenic | 30.0% | |
| TTGATCATTGATCTGTTCAA+TGG | + | chr1_1:76766610-76766629 | Msa0045080:CDS | 30.0% | |
| TGATCATTGATCTGTTCAAT+GGG | + | chr1_1:76766611-76766630 | Msa0045080:CDS | 30.0% | |
| TGAGAGTGAAAAGGGATTTA+GGG | - | chr1_1:76763451-76763470 | None:intergenic | 35.0% | |
| TTGAGAGTGAAAAGGGATTT+AGG | - | chr1_1:76763452-76763471 | None:intergenic | 35.0% | |
| GAATCGATTGAGAGTGAAAA+GGG | - | chr1_1:76763459-76763478 | None:intergenic | 35.0% | |
| TGAATCGATTGAGAGTGAAA+AGG | - | chr1_1:76763460-76763479 | None:intergenic | 35.0% | |
| GAGTGAGAGTGAATTGAAAA+TGG | - | chr1_1:76763500-76763519 | None:intergenic | 35.0% | |
| GGTTACATTTAATACGGTCT+GGG | - | chr1_1:76763524-76763543 | None:intergenic | 35.0% | |
| AGGTTACATTTAATACGGTC+TGG | - | chr1_1:76763525-76763544 | None:intergenic | 35.0% | |
| TCAGTCTCTCTATCTTGAAA+AGG | + | chr1_1:76763674-76763693 | Msa0045080:five_prime_UTR | 35.0% | |
| !!! | TTTCCAGTTTTCGAGTTGTA+CGG | + | chr1_1:76764652-76764671 | Msa0045080:CDS | 35.0% |
| !!! | TTTTCGAGTTGTACGGAATT+TGG | + | chr1_1:76764659-76764678 | Msa0045080:CDS | 35.0% |
| !! | TTTCGAGTTGTACGGAATTT+GGG | + | chr1_1:76764660-76764679 | Msa0045080:CDS | 35.0% |
| ACCAACAATCACACGAATAA+CGG | - | chr1_1:76764736-76764755 | None:intergenic | 35.0% | |
| ! | TATGAATGACCTGTGTTTTG+TGG | + | chr1_1:76764767-76764786 | Msa0045080:CDS | 35.0% |
| TTGTTCAAGACACAAACATG+TGG | + | chr1_1:76764863-76764882 | Msa0045080:intron | 35.0% | |
| TGTTCAAGACACAAACATGT+GGG | + | chr1_1:76764864-76764883 | Msa0045080:intron | 35.0% | |
| GCCAATGGAATATAATGTTG+AGG | + | chr1_1:76764957-76764976 | Msa0045080:CDS | 35.0% | |
| CCCTCAACATTATATTCCAT+TGG | - | chr1_1:76764961-76764980 | None:intergenic | 35.0% | |
| !! | TTCTCCCATGGATTTTAAAG+TGG | + | chr1_1:76765090-76765109 | Msa0045080:intron | 35.0% |
| !! | CCTACCACTTTAAAATCCAT+GGG | - | chr1_1:76765097-76765116 | None:intergenic | 35.0% |
| !! | TCCTACCACTTTAAAATCCA+TGG | - | chr1_1:76765098-76765117 | None:intergenic | 35.0% |
| !!! | GATTTTAAAGTGGTAGGATC+CGG | + | chr1_1:76765100-76765119 | Msa0045080:intron | 35.0% |
| AGACAACACAACCTTCAATT+TGG | - | chr1_1:76765151-76765170 | None:intergenic | 35.0% | |
| AAATTGAAGGTTGTGTTGTC+TGG | + | chr1_1:76765150-76765169 | Msa0045080:CDS | 35.0% | |
| CATATAGGTTTCATTTCGCA+GGG | + | chr1_1:76765273-76765292 | Msa0045080:intron | 35.0% | |
| AAAACAAAACCCGACAGAAA+AGG | - | chr1_1:76765311-76765330 | None:intergenic | 35.0% | |
| TGGCTAGAATTCACCTTATA+AGG | + | chr1_1:76765462-76765481 | Msa0045080:intron | 35.0% | |
| CACCTTATAAGGTGAATAAG+TGG | + | chr1_1:76765473-76765492 | Msa0045080:intron | 35.0% | |
| CCTTATAAGGTGAATAAGTG+GGG | + | chr1_1:76765475-76765494 | Msa0045080:intron | 35.0% | |
| !! | CAAGGCTTTATTATATGCAG+GGG | - | chr1_1:76765522-76765541 | None:intergenic | 35.0% |
| !! | GACAAGGCTTTATTATATGC+AGG | - | chr1_1:76765524-76765543 | None:intergenic | 35.0% |
| TCAGTAACCTGCATGATATT+CGG | - | chr1_1:76765716-76765735 | None:intergenic | 35.0% | |
| !!! | TCATGCAGGTTACTGATTTT+AGG | + | chr1_1:76765720-76765739 | Msa0045080:intron | 35.0% |
| !! | TGAATTCTCTTTTGTTTGCG+TGG | + | chr1_1:76765749-76765768 | Msa0045080:intron | 35.0% |
| AGTTCAACTATCGTCTTCTT+CGG | - | chr1_1:76765928-76765947 | None:intergenic | 35.0% | |
| CTTGACTCCATTATTGAAGA+TGG | + | chr1_1:76765946-76765965 | Msa0045080:CDS | 35.0% | |
| !! | TTATTGATGGTGAAGATTGG+TGG | + | chr1_1:76766001-76766020 | Msa0045080:CDS | 35.0% |
| AAGGATGCATCAACTTTGAT+AGG | + | chr1_1:76766054-76766073 | Msa0045080:CDS | 35.0% | |
| TCAACTTTGATAGGCGATAA+TGG | + | chr1_1:76766063-76766082 | Msa0045080:CDS | 35.0% | |
| ! | CCATTTAATTTCAAGGTGGA+CGG | + | chr1_1:76766104-76766123 | Msa0045080:intron | 35.0% |
| ! | CATTTAATTTCAAGGTGGAC+GGG | + | chr1_1:76766105-76766124 | Msa0045080:intron | 35.0% |
| AACTCGGAAACAATAAATCG+AGG | - | chr1_1:76766148-76766167 | None:intergenic | 35.0% | |
| GCAAAGTTTACTGTCTTTGA+TGG | + | chr1_1:76766237-76766256 | Msa0045080:CDS | 35.0% | |
| TTCTCAACAAATTACGCAAC+AGG | - | chr1_1:76766411-76766430 | None:intergenic | 35.0% | |
| !!! | TTTTCCCTATCGGTTTAAGT+AGG | - | chr1_1:76766458-76766477 | None:intergenic | 35.0% |
| ! | CCTTTGAATGTTTTCCCTAT+CGG | - | chr1_1:76766468-76766487 | None:intergenic | 35.0% |
| ACAATGACTGAAATTGAGGT+GGG | - | chr1_1:76766495-76766514 | None:intergenic | 35.0% | |
| AACAATGACTGAAATTGAGG+TGG | - | chr1_1:76766496-76766515 | None:intergenic | 35.0% | |
| CCAAACAATGACTGAAATTG+AGG | - | chr1_1:76766499-76766518 | None:intergenic | 35.0% | |
| CCTCAATTTCAGTCATTGTT+TGG | + | chr1_1:76766496-76766515 | Msa0045080:CDS | 35.0% | |
| AATTTCAGTCATTGTTTGGG+AGG | + | chr1_1:76766500-76766519 | Msa0045080:CDS | 35.0% | |
| !!! | TGGGAGGAATTTGCTTTTTT+TGG | + | chr1_1:76766516-76766535 | Msa0045080:CDS | 35.0% |
| !!! | GAGGAATTTGCTTTTTTTGG+TGG | + | chr1_1:76766519-76766538 | Msa0045080:CDS | 35.0% |
| CTATAACAACAATCCAAGGT+TGG | - | chr1_1:76766565-76766584 | None:intergenic | 35.0% | |
| !!! | GACTTTGAGTTTTTTCCAAG+TGG | + | chr1_1:76766747-76766766 | Msa0045080:CDS | 35.0% |
| !!! | TTTGAGTTTTTTCCAAGTGG+TGG | + | chr1_1:76766750-76766769 | Msa0045080:CDS | 35.0% |
| !! | AAATGAGATTTTGGCGAGAG+AGG | - | chr1_1:76763545-76763564 | None:intergenic | 40.0% |
| ! | CTCTCGCCAAAATCTCATTT+TGG | + | chr1_1:76763545-76763564 | Msa0045080:five_prime_UTR | 40.0% |
| CAAAGCTTTCTCAACAATGG+CGG | - | chr1_1:76763606-76763625 | None:intergenic | 40.0% | |
| CCTCAAAGCTTTCTCAACAA+TGG | - | chr1_1:76763609-76763628 | None:intergenic | 40.0% | |
| CCATTGTTGAGAAAGCTTTG+AGG | + | chr1_1:76763606-76763625 | Msa0045080:five_prime_UTR | 40.0% | |
| ATATGTCCATCTCGAAGGAA+AGG | - | chr1_1:76764304-76764323 | None:intergenic | 40.0% | |
| CAACAATATGTCCATCTCGA+AGG | - | chr1_1:76764309-76764328 | None:intergenic | 40.0% | |
| AACCTCACTTCTATGCTAAG+AGG | - | chr1_1:76764353-76764372 | None:intergenic | 40.0% | |
| AAATTGGTATCGTACGTCTC+TGG | + | chr1_1:76764375-76764394 | Msa0045080:CDS | 40.0% | |
| AATTGGTATCGTACGTCTCT+GGG | + | chr1_1:76764376-76764395 | Msa0045080:CDS | 40.0% | |
| AATGTGACTATGCTGAGTGT+TGG | + | chr1_1:76764533-76764552 | Msa0045080:intron | 40.0% | |
| TGTATAGGGATGTAGGATTC+AGG | + | chr1_1:76764563-76764582 | Msa0045080:intron | 40.0% | |
| AGGAGTTAGTTCACCTGTTT+CGG | + | chr1_1:76764598-76764617 | Msa0045080:CDS | 40.0% | |
| ATTCCGTACAACTCGAAAAC+TGG | - | chr1_1:76764658-76764677 | None:intergenic | 40.0% | |
| ! | TCTTATCGTGTCACTAACCA+TGG | + | chr1_1:76764684-76764703 | Msa0045080:CDS | 40.0% |
| ACCGTTATTCGTGTGATTGT+TGG | + | chr1_1:76764732-76764751 | Msa0045080:CDS | 40.0% | |
| CAGATGAATCCACAAAACAC+AGG | - | chr1_1:76764779-76764798 | None:intergenic | 40.0% | |
| TCAGAGTGATTGTGACTTCT+TGG | + | chr1_1:76764812-76764831 | Msa0045080:CDS | 40.0% | |
| !!! | CCCATGGATTTTAAAGTGGT+AGG | + | chr1_1:76765094-76765113 | Msa0045080:intron | 40.0% |
| CGAATGCACTTCCAAATTGA+AGG | + | chr1_1:76765137-76765156 | Msa0045080:CDS | 40.0% | |
| CCTGCGAAATGAAACCTATA+TGG | - | chr1_1:76765275-76765294 | None:intergenic | 40.0% | |
| CCATATAGGTTTCATTTCGC+AGG | + | chr1_1:76765272-76765291 | Msa0045080:intron | 40.0% | |
| TAAGGTGAATTCTAGCCACT+AGG | - | chr1_1:76765460-76765479 | None:intergenic | 40.0% | |
| CCCCACTTATTCACCTTATA+AGG | - | chr1_1:76765478-76765497 | None:intergenic | 40.0% | |
| TCCTTATGTAGAGAACGTCA+AGG | + | chr1_1:76765667-76765686 | Msa0045080:intron | 40.0% | |
| TCCTTGACGTTCTCTACATA+AGG | - | chr1_1:76765671-76765690 | None:intergenic | 40.0% | |
| TGTAGATCCGAATATCATGC+AGG | + | chr1_1:76765706-76765725 | Msa0045080:intron | 40.0% | |
| AAGTGTTTGTGGAATTCCTG+CGG | + | chr1_1:76765834-76765853 | Msa0045080:CDS | 40.0% | |
| TCTCATCTTTGGACCAATAG+AGG | - | chr1_1:76765872-76765891 | None:intergenic | 40.0% | |
| GGTCCAAAGATGAGAGAATA+CGG | + | chr1_1:76765877-76765896 | Msa0045080:CDS | 40.0% | |
| GTTCAACTATCGTCTTCTTC+GGG | - | chr1_1:76765927-76765946 | None:intergenic | 40.0% | |
| GTTATCTCAGCATGTTTGAC+TGG | + | chr1_1:76765976-76765995 | Msa0045080:CDS | 40.0% | |
| CCGTCCACCTTGAAATTAAA+TGG | - | chr1_1:76766107-76766126 | None:intergenic | 40.0% | |
| TTGTTCGACGATGATCTTAG+TGG | + | chr1_1:76766282-76766301 | Msa0045080:CDS | 40.0% | |
| CCGATAGGGAAAACATTCAA+AGG | + | chr1_1:76766465-76766484 | Msa0045080:intron | 40.0% | |
| ACAACAATCCAAGGTTGGAT+TGG | - | chr1_1:76766560-76766579 | None:intergenic | 40.0% | |
| CATTGATCTGTTCAATGGGA+AGG | + | chr1_1:76766615-76766634 | Msa0045080:CDS | 40.0% | |
| ! | GTTTGTTGAGACTTAGGCAA+AGG | + | chr1_1:76766695-76766714 | Msa0045080:intron | 40.0% |
| !! | GAGAAAGCTTTGAGGACGAA+AGG | + | chr1_1:76763614-76763633 | Msa0045080:five_prime_UTR | 45.0% |
| ! | TTTGAGGACGAAAGGTACGA+AGG | + | chr1_1:76763622-76763641 | Msa0045080:five_prime_UTR | 45.0% |
| GTTAGACTCACACACTCCAA+AGG | - | chr1_1:76763863-76763882 | None:intergenic | 45.0% | |
| TTGGTTCCTTTCCTTCGAGA+TGG | + | chr1_1:76764295-76764314 | Msa0045080:exon | 45.0% | |
| TTGTTGCATAACCTGAGCGA+TGG | + | chr1_1:76764323-76764342 | Msa0045080:CDS | 45.0% | |
| CTCCTCTTAGCATAGAAGTG+AGG | + | chr1_1:76764348-76764367 | Msa0045080:CDS | 45.0% | |
| CTTGTCACCATCGTACGAAT+GGG | - | chr1_1:76764405-76764424 | None:intergenic | 45.0% | |
| GATCATCACATCTCTCGAGA+TGG | + | chr1_1:76764427-76764446 | Msa0045080:CDS | 45.0% | |
| AACAGGTGAACTAACTCCTC+TGG | - | chr1_1:76764597-76764616 | None:intergenic | 45.0% | |
| TGAACAGTCTCATCCGAAAC+AGG | - | chr1_1:76764614-76764633 | None:intergenic | 45.0% | |
| TTTCGGATGAGACTGTTCAC+TGG | + | chr1_1:76764615-76764634 | Msa0045080:CDS | 45.0% | |
| CAGGTCATTCATACGACTCA+AGG | - | chr1_1:76764760-76764779 | None:intergenic | 45.0% | |
| AGTGATTGTGACTTCTTGGC+TGG | + | chr1_1:76764816-76764835 | Msa0045080:CDS | 45.0% | |
| ! | TGCTTGAGCTTTTGGATACC+AGG | + | chr1_1:76765001-76765020 | Msa0045080:CDS | 45.0% |
| GCAAAACGAATAACCACCAC+CGG | - | chr1_1:76765192-76765211 | None:intergenic | 45.0% | |
| ! | TGGACTGCCGTTTACCATAT+AGG | + | chr1_1:76765258-76765277 | Msa0045080:intron | 45.0% |
| TGGTCAAGTAAGTAGCCTAG+TGG | + | chr1_1:76765442-76765461 | Msa0045080:intron | 45.0% | |
| TTTATTATATGCAGGGGCCG+GGG | - | chr1_1:76765516-76765535 | None:intergenic | 45.0% | |
| CTTTATTATATGCAGGGGCC+GGG | - | chr1_1:76765517-76765536 | None:intergenic | 45.0% | |
| ! | GCTTTATTATATGCAGGGGC+CGG | - | chr1_1:76765518-76765537 | None:intergenic | 45.0% |
| !! | ATAGCTCAGTTGGTAGGACA+AGG | - | chr1_1:76765540-76765559 | None:intergenic | 45.0% |
| TACCAACTGAGCTATGCTCA+CGG | + | chr1_1:76765545-76765564 | Msa0045080:intron | 45.0% | |
| CGTTGCAGGTTAAGTGTTTG+TGG | + | chr1_1:76765823-76765842 | Msa0045080:intron | 45.0% | |
| TCGCCGTATTCTCTCATCTT+TGG | - | chr1_1:76765883-76765902 | None:intergenic | 45.0% | |
| AAAGATGAGAGAATACGGCG+AGG | + | chr1_1:76765882-76765901 | Msa0045080:CDS | 45.0% | |
| ! | TGTCTTTGATGGTACCAGTG+AGG | + | chr1_1:76766248-76766267 | Msa0045080:CDS | 45.0% |
| CAAAACAAACACAGCCTCAC+TGG | - | chr1_1:76766265-76766284 | None:intergenic | 45.0% | |
| GTCTACTTCCAATCCAACCT+TGG | + | chr1_1:76766549-76766568 | Msa0045080:CDS | 45.0% | |
| TGACATTCACAACCACCACT+TGG | - | chr1_1:76766765-76766784 | None:intergenic | 45.0% | |
| TGGTTGTGAATGTCATGCGA+GGG | + | chr1_1:76766770-76766789 | Msa0045080:CDS | 45.0% | |
| !!! | AAAATTATTTAATTTAAAAC+AGG | + | chr1_1:76765641-76765660 | Msa0045080:intron | 5.0% |
| TAAGAGGAGAACCATCGCTC+AGG | - | chr1_1:76764337-76764356 | None:intergenic | 50.0% | |
| TGGGAAACCCATTCGTACGA+TGG | + | chr1_1:76764395-76764414 | Msa0045080:CDS | 50.0% | |
| GCTTGTCACCATCGTACGAA+TGG | - | chr1_1:76764406-76764425 | None:intergenic | 50.0% | |
| GATTGCGATGTCTGAGCCAA+TGG | + | chr1_1:76764942-76764961 | Msa0045080:CDS | 50.0% | |
| AAGCTCAAGCAGCATCAGCT+TGG | - | chr1_1:76764992-76765011 | None:intergenic | 50.0% | |
| !! | GCTGATGCTGCTTGAGCTTT+TGG | + | chr1_1:76764993-76765012 | Msa0045080:CDS | 50.0% |
| ! | GAAAAGGCGTAAGCAACGCT+AGG | - | chr1_1:76765032-76765051 | None:intergenic | 50.0% |
| ATTCGCCAGACACAAGACAC+CGG | - | chr1_1:76765122-76765141 | None:intergenic | 50.0% | |
| GGTTGTGTTGTCTGGTTGCA+CGG | + | chr1_1:76765158-76765177 | Msa0045080:CDS | 50.0% | |
| GTTGTGTTGTCTGGTTGCAC+GGG | + | chr1_1:76765159-76765178 | Msa0045080:CDS | 50.0% | |
| AGGTGAATAAGTGGGGTGTG+CGG | + | chr1_1:76765482-76765501 | Msa0045080:intron | 50.0% | |
| GTGAGCATAGCTCAGTTGGT+AGG | - | chr1_1:76765546-76765565 | None:intergenic | 50.0% | |
| ACCAACTGAGCTATGCTCAC+GGG | + | chr1_1:76765546-76765565 | Msa0045080:intron | 50.0% | |
| TGGACCAATAGAGGCGATAG+AGG | - | chr1_1:76765863-76765882 | None:intergenic | 50.0% | |
| ATGCATCCTTCTCAACCTCG+TGG | - | chr1_1:76766044-76766063 | None:intergenic | 50.0% | |
| GTGGTTGTGAATGTCATGCG+AGG | + | chr1_1:76766769-76766788 | Msa0045080:CDS | 50.0% | |
| GGTTGTGAATGTCATGCGAG+GGG | + | chr1_1:76766771-76766790 | Msa0045080:CDS | 50.0% | |
| ! | GAGGACGAAAGGTACGAAGG+AGG | + | chr1_1:76763625-76763644 | Msa0045080:five_prime_UTR | 55.0% |
| GGGATGTAGGATTCAGGCGT+CGG | + | chr1_1:76764569-76764588 | Msa0045080:intron | 55.0% | |
| CGGATGAGACTGTTCACTGG+CGG | + | chr1_1:76764618-76764637 | Msa0045080:CDS | 55.0% | |
| AAGCAACGCTAGGAGGAACC+TGG | - | chr1_1:76765022-76765041 | None:intergenic | 55.0% | |
| AAGGCGTAAGCAACGCTAGG+AGG | - | chr1_1:76765029-76765048 | None:intergenic | 55.0% | |
| AGGATCCGGTGTCTTGTGTC+TGG | + | chr1_1:76765114-76765133 | Msa0045080:CDS | 55.0% | |
| TGGTTGCACGGGTGACAAAC+CGG | + | chr1_1:76765170-76765189 | Msa0045080:CDS | 55.0% | |
| GGTGAATAAGTGGGGTGTGC+GGG | + | chr1_1:76765483-76765502 | Msa0045080:intron | 55.0% | |
| TCCCGTGAGCATAGCTCAGT+TGG | - | chr1_1:76765550-76765569 | None:intergenic | 55.0% | |
| GACGCCTCTATCGCCTCTAT+TGG | + | chr1_1:76765856-76765875 | Msa0045080:CDS | 55.0% | |
| TCCTTCTCTTTCGTGCCACG+AGG | + | chr1_1:76766026-76766045 | Msa0045080:CDS | 55.0% | |
| ACCTCGTGGCACGAAAGAGA+AGG | - | chr1_1:76766030-76766049 | None:intergenic | 55.0% | |
| TTCGTGCCACGAGGTTGAGA+AGG | + | chr1_1:76766035-76766054 | Msa0045080:CDS | 55.0% | |
| !! | GATTCAGGCGTCGGTTCCAG+AGG | + | chr1_1:76764578-76764597 | Msa0045080:CDS | 60.0% |
| TTGCACGGGTGACAAACCGG+TGG | + | chr1_1:76765173-76765192 | Msa0045080:CDS | 60.0% | |
| CACGGGTGACAAACCGGTGG+TGG | + | chr1_1:76765176-76765195 | Msa0045080:CDS | 65.0% | |
| GGTGTGCGGGATTCGAACCC+CGG | + | chr1_1:76765496-76765515 | Msa0045080:intron | 65.0% | |
| !! | GAGGCGATAGAGGCGTCCGC+AGG | - | chr1_1:76765853-76765872 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 76763429 | 76766800 | 76763429 | ID=Msa0045080;Name=Msa0045080 |
| chr1_1 | mRNA | 76763429 | 76766800 | 76763429 | ID=Msa0045080-mRNA-1;Parent=Msa0045080;Name=Msa0045080-mRNA-1;_AED=0.24;_eAED=0.27;_QI=296|0.75|0.77|1|0.75|0.66|9|0|434 |
| chr1_1 | exon | 76763429 | 76763695 | 76763429 | ID=Msa0045080-mRNA-1:exon:26176;Parent=Msa0045080-mRNA-1 |
| chr1_1 | exon | 76764285 | 76764466 | 76764285 | ID=Msa0045080-mRNA-1:exon:26177;Parent=Msa0045080-mRNA-1 |
| chr1_1 | exon | 76764570 | 76764837 | 76764570 | ID=Msa0045080-mRNA-1:exon:26178;Parent=Msa0045080-mRNA-1 |
| chr1_1 | exon | 76764926 | 76765022 | 76764926 | ID=Msa0045080-mRNA-1:exon:26179;Parent=Msa0045080-mRNA-1 |
| chr1_1 | exon | 76765110 | 76765235 | 76765110 | ID=Msa0045080-mRNA-1:exon:26180;Parent=Msa0045080-mRNA-1 |
| chr1_1 | exon | 76765831 | 76766118 | 76765831 | ID=Msa0045080-mRNA-1:exon:26181;Parent=Msa0045080-mRNA-1 |
| chr1_1 | exon | 76766230 | 76766347 | 76766230 | ID=Msa0045080-mRNA-1:exon:26182;Parent=Msa0045080-mRNA-1 |
| chr1_1 | exon | 76766472 | 76766636 | 76766472 | ID=Msa0045080-mRNA-1:exon:26183;Parent=Msa0045080-mRNA-1 |
| chr1_1 | exon | 76766711 | 76766800 | 76766711 | ID=Msa0045080-mRNA-1:exon:26184;Parent=Msa0045080-mRNA-1 |
| chr1_1 | five_prime_UTR | 76763429 | 76763695 | 76763429 | ID=Msa0045080-mRNA-1:five_prime_utr;Parent=Msa0045080-mRNA-1 |
| chr1_1 | five_prime_UTR | 76764285 | 76764313 | 76764285 | ID=Msa0045080-mRNA-1:five_prime_utr;Parent=Msa0045080-mRNA-1 |
| chr1_1 | CDS | 76764314 | 76764466 | 76764314 | ID=Msa0045080-mRNA-1:cds;Parent=Msa0045080-mRNA-1 |
| chr1_1 | CDS | 76764570 | 76764837 | 76764570 | ID=Msa0045080-mRNA-1:cds;Parent=Msa0045080-mRNA-1 |
| chr1_1 | CDS | 76764926 | 76765022 | 76764926 | ID=Msa0045080-mRNA-1:cds;Parent=Msa0045080-mRNA-1 |
| chr1_1 | CDS | 76765110 | 76765235 | 76765110 | ID=Msa0045080-mRNA-1:cds;Parent=Msa0045080-mRNA-1 |
| chr1_1 | CDS | 76765831 | 76766118 | 76765831 | ID=Msa0045080-mRNA-1:cds;Parent=Msa0045080-mRNA-1 |
| chr1_1 | CDS | 76766230 | 76766347 | 76766230 | ID=Msa0045080-mRNA-1:cds;Parent=Msa0045080-mRNA-1 |
| chr1_1 | CDS | 76766472 | 76766636 | 76766472 | ID=Msa0045080-mRNA-1:cds;Parent=Msa0045080-mRNA-1 |
| chr1_1 | CDS | 76766711 | 76766800 | 76766711 | ID=Msa0045080-mRNA-1:cds;Parent=Msa0045080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
