AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0045060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045060 MtrunA17_Chr1g0212071 94.471 416 23 0 1 416 1 416 0.0 785
Msa0045060 MtrunA17_Chr7g0217301 85.526 76 11 0 313 388 48 123 1.31e-38 136
Msa0045060 MtrunA17_Chr7g0217301 46.154 156 51 5 1 153 1 126 8.87e-24 96.7
Msa0045060 MtrunA17_Chr2g0286991 31.180 356 209 7 64 394 179 523 1.60e-35 138
Msa0045060 MtrunA17_Chr2g0286991 28.087 413 266 12 16 404 7 412 1.89e-34 135
Msa0045060 MtrunA17_Chr2g0286991 32.468 308 201 5 98 403 282 584 1.12e-31 127
Msa0045060 MtrunA17_Chr2g0286991 29.469 207 144 2 95 301 385 589 7.92e-17 82.8
Msa0045060 MtrunA17_Chr8g0347711 28.375 363 198 3 20 336 15 361 1.19e-31 124
Msa0045060 MtrunA17_Chr7g0272131 26.207 435 254 12 20 403 49 467 1.77e-28 117
Msa0045060 MtrunA17_Chr7g0272131 30.744 309 177 9 101 406 328 602 8.36e-28 115
Msa0045060 MtrunA17_Chr4g0004901 26.969 419 234 13 18 379 62 465 5.97e-28 116
Msa0045060 MtrunA17_Chr4g0004901 30.435 276 184 6 95 367 367 637 1.84e-24 105
Msa0045060 MtrunA17_Chr4g0004901 27.160 324 201 8 94 390 288 603 1.04e-22 100
Msa0045060 MtrunA17_Chr4g0063841 25.935 428 260 9 18 390 62 487 2.38e-25 108
Msa0045060 MtrunA17_Chr4g0063841 30.196 255 167 6 145 392 133 383 2.30e-18 87.4
Msa0045060 MtrunA17_Chr4g0063841 27.972 286 200 6 103 385 332 614 1.63e-17 84.7
Msa0045060 MtrunA17_Chr4g0063841 31.633 196 130 4 94 286 428 622 6.26e-16 79.7
Msa0045060 MtrunA17_Chr1g0159531 32.114 246 149 6 103 346 84 313 7.73e-25 104
Msa0045060 MtrunA17_Chr1g0159531 31.980 197 100 4 96 279 156 331 1.40e-19 89.4
Msa0045060 MtrunA17_Chr1g0159531 29.482 251 138 8 165 411 68 283 3.05e-17 82.4
Msa0045060 MtrunA17_Chr1g0176031 28.819 288 166 6 52 309 55 333 1.39e-24 103
Msa0045060 MtrunA17_Chr1g0176031 25.431 232 144 6 175 379 67 296 6.31e-14 72.8
Msa0045060 MtrunA17_Chr1g0149351 26.385 379 257 8 18 382 66 436 1.94e-24 105
Msa0045060 MtrunA17_Chr1g0149351 25.298 336 219 5 95 400 306 639 1.78e-22 100
Msa0045060 MtrunA17_Chr1g0149351 27.066 351 215 8 94 410 175 518 2.02e-22 99.8
Msa0045060 MtrunA17_Chr3g0125671 32.547 212 129 4 136 346 130 328 3.25e-23 100
Msa0045060 MtrunA17_Chr3g0125671 34.146 164 91 3 96 243 168 330 4.72e-19 88.2
Msa0045060 MtrunA17_Chr3g0137771 25.888 394 262 12 18 398 69 445 4.02e-23 102
Msa0045060 MtrunA17_Chr3g0137771 25.084 299 193 5 95 390 304 574 2.34e-17 84.3
Msa0045060 MtrunA17_Chr3g0137771 26.333 300 163 5 90 332 325 623 5.32e-15 77.0
Msa0045060 MtrunA17_Chr4g0070541 26.493 268 183 7 95 357 411 669 7.32e-19 89.0
Msa0045060 MtrunA17_Chr4g0070541 28.346 254 153 4 162 386 369 622 1.06e-15 79.3
Msa0045060 MtrunA17_Chr4g0063861 26.241 282 200 7 113 390 46 323 7.70e-19 87.8
Msa0045060 MtrunA17_Chr4g0063861 30.457 197 133 4 94 287 185 380 4.27e-16 79.3
Msa0045060 MtrunA17_Chr4g0011101 23.223 422 259 13 39 403 38 451 6.32e-18 85.5
Msa0045060 MtrunA17_Chr4g0053361 26.747 415 259 13 6 386 32 435 3.21e-17 83.6
Msa0045060 MtrunA17_Chr3g0079141 24.706 425 253 14 3 393 47 438 9.03e-15 75.9
Msa0045060 MtrunA17_Chr4g0070521 25.974 308 198 9 65 357 18 310 1.09e-14 74.7
Msa0045060 MtrunA17_Chr4g0070521 26.690 281 164 6 164 405 2 279 3.43e-12 67.4
Msa0045060 MtrunA17_Chr3g0140021 27.347 245 127 5 43 239 24 265 1.15e-14 74.3
Msa0045060 MtrunA17_Chr4g0018891 25.126 398 232 13 20 385 82 445 6.83e-14 73.2
Msa0045060 MtrunA17_Chr4g0002461 27.698 278 178 8 20 286 33 298 1.36e-13 71.2
Msa0045060 MtrunA17_Chr3g0106541 23.630 292 186 8 117 391 145 416 1.46e-13 72.4
Msa0045060 MtrunA17_Chr4g0002671 22.200 500 257 12 26 393 12 511 2.60e-13 71.6
Msa0045060 MtrunA17_Chr1g0152951 24.146 410 188 15 23 346 66 438 3.03e-13 71.2
Msa0045060 MtrunA17_Chr5g0446541 24.645 422 253 14 39 403 68 481 1.28e-12 69.7
Msa0045060 MtrunA17_Chr3g0092191 31.737 167 109 3 164 325 19 185 1.30e-12 66.2
Msa0045060 MtrunA17_Chr3g0092201 31.737 167 109 3 164 325 19 185 1.30e-12 66.2
Msa0045060 MtrunA17_Chr4g0002431 27.907 258 136 10 20 233 44 295 1.59e-12 68.2
Msa0045060 MtrunA17_Chr4g0073771 28.218 202 115 5 227 405 79 273 3.13e-12 67.0
Msa0045060 MtrunA17_Chr4g0073771 29.412 170 95 4 96 245 102 266 8.07e-12 65.9
Msa0045060 MtrunA17_Chr2g0300611 26.070 257 174 9 95 343 416 664 4.49e-12 68.2
Msa0045060 MtrunA17_Chr4g0002451 26.103 272 153 11 31 257 22 290 4.91e-12 66.2
Msa0045060 MtrunA17_Chr4g0009971 24.092 303 209 7 90 382 128 419 5.21e-12 67.4
Msa0045060 MtrunA17_Chr4g0009861 24.490 294 204 10 115 402 1 282 6.49e-12 66.2
Msa0045060 MtrunA17_Chr1g0211631 24.207 347 229 10 95 414 231 570 1.84e-11 65.9
Msa0045060 MtrunA17_Chr5g0436511 24.183 459 264 18 16 399 7 456 3.75e-11 65.1
Msa0045060 MtrunA17_Chr3g0115841 21.407 327 183 9 126 390 1 315 3.86e-11 64.3
Msa0045060 MtrunA17_Chr5g0440851 30.935 139 92 3 95 233 27 161 9.56e-11 60.8
Msa0045060 MtrunA17_Chr8g0352431 23.460 341 193 13 67 365 78 392 9.71e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045060 AT5G23340.1 71.921 406 113 1 11 416 1 405 0.0 596
Msa0045060 AT4G15475.1 33.221 298 192 4 95 390 279 571 8.79e-37 142
Msa0045060 AT4G15475.1 30.573 314 211 5 85 398 221 527 4.26e-32 128
Msa0045060 AT4G15475.1 24.270 445 270 10 16 396 7 448 1.54e-27 115
Msa0045060 AT4G15475.1 27.703 296 174 4 92 362 304 584 1.00e-26 112
Msa0045060 AT4G15475.1 30.435 207 142 2 95 301 385 589 4.36e-20 93.2
Msa0045060 AT4G15475.1 30.114 176 98 2 94 244 410 585 7.96e-14 73.9
Msa0045060 AT2G25490.1 27.617 449 253 13 18 407 65 500 1.74e-28 118
Msa0045060 AT2G25490.1 25.926 324 211 6 95 391 294 615 6.75e-22 98.6
Msa0045060 AT2G25490.1 32.164 171 102 6 93 257 452 614 1.14e-11 67.0
Msa0045060 AT5G01720.1 27.726 321 202 5 94 390 238 552 5.13e-28 117
Msa0045060 AT5G01720.1 24.582 419 202 9 37 379 34 414 4.56e-22 99.4
Msa0045060 AT5G01720.1 26.766 269 164 5 95 339 316 575 5.97e-19 89.7
Msa0045060 AT3G07550.1 27.632 380 206 10 20 349 18 378 4.44e-27 112
Msa0045060 AT3G07550.2 27.632 380 206 10 20 349 18 378 4.44e-27 112
Msa0045060 AT3G07550.3 28.099 363 199 9 20 349 18 351 1.66e-26 110
Msa0045060 AT3G58530.1 29.183 257 173 5 107 359 80 331 5.04e-26 108
Msa0045060 AT3G58530.1 28.125 256 151 5 84 309 83 335 1.83e-17 83.6
Msa0045060 AT3G58530.1 25.862 232 143 6 175 379 69 298 8.10e-15 75.9
Msa0045060 AT1G77000.2 36.111 180 112 3 121 298 104 282 1.08e-24 104
Msa0045060 AT1G77000.2 29.779 272 161 6 71 318 85 350 1.31e-20 92.8
Msa0045060 AT1G77000.2 30.455 220 132 5 146 346 103 320 3.78e-18 85.9
Msa0045060 AT1G77000.2 31.443 194 108 3 60 234 127 314 1.06e-17 84.3
Msa0045060 AT1G77000.2 28.125 224 103 5 165 386 69 236 2.10e-11 65.5
Msa0045060 AT1G77000.1 36.111 180 112 3 121 298 104 282 1.08e-24 104
Msa0045060 AT1G77000.1 29.779 272 161 6 71 318 85 350 1.31e-20 92.8
Msa0045060 AT1G77000.1 30.455 220 132 5 146 346 103 320 3.78e-18 85.9
Msa0045060 AT1G77000.1 31.443 194 108 3 60 234 127 314 1.06e-17 84.3
Msa0045060 AT1G77000.1 28.125 224 103 5 165 386 69 236 2.10e-11 65.5
Msa0045060 AT5G27920.1 28.621 290 195 8 113 401 330 608 1.05e-23 103
Msa0045060 AT5G27920.1 31.308 214 139 5 83 294 404 611 6.90e-14 73.9
Msa0045060 AT5G27920.1 25.245 408 252 12 38 407 28 420 2.62e-13 72.4
Msa0045060 AT5G25350.1 30.435 299 198 7 95 386 284 579 1.77e-23 103
Msa0045060 AT5G25350.1 23.013 478 260 8 18 390 56 530 2.13e-20 94.0
Msa0045060 AT5G25350.1 27.985 268 159 6 145 406 120 359 1.03e-15 79.7
Msa0045060 AT5G25350.1 25.667 300 163 8 94 334 309 607 3.26e-12 68.9
Msa0045060 AT1G21410.2 27.946 297 168 6 71 362 85 340 3.36e-22 97.4
Msa0045060 AT1G21410.2 28.634 227 123 5 47 234 88 314 2.30e-19 89.4
Msa0045060 AT1G21410.2 27.049 244 169 6 119 360 26 262 2.47e-14 74.3
Msa0045060 AT1G21410.1 27.946 297 168 6 71 362 85 340 3.36e-22 97.4
Msa0045060 AT1G21410.1 28.634 227 123 5 47 234 88 314 2.30e-19 89.4
Msa0045060 AT1G21410.1 27.049 244 169 6 119 360 26 262 2.47e-14 74.3
Msa0045060 AT5G51380.1 26.757 370 197 14 28 334 75 433 1.01e-16 82.4
Msa0045060 AT5G51370.2 26.536 358 199 13 35 334 46 397 2.14e-16 81.3
Msa0045060 AT1G80570.1 27.928 333 213 8 18 325 2 332 3.09e-16 80.9
Msa0045060 AT1G80570.3 27.928 333 213 8 18 325 2 332 3.09e-16 80.9
Msa0045060 AT4G07400.1 26.055 403 208 12 43 391 99 465 3.53e-16 80.9
Msa0045060 AT1G80570.2 27.928 333 213 8 18 325 15 345 4.22e-16 80.5
Msa0045060 AT1G77000.3 33.333 153 96 2 71 222 85 232 4.38e-16 78.2
Msa0045060 AT1G77000.3 36.242 149 92 3 103 249 85 232 6.06e-16 77.8
Msa0045060 AT1G77000.3 35.115 131 83 2 146 275 103 232 3.05e-13 69.7
Msa0045060 AT1G77000.3 29.293 198 108 5 165 360 69 236 4.89e-12 66.2
Msa0045060 AT1G77000.4 33.333 153 96 2 71 222 85 232 4.38e-16 78.2
Msa0045060 AT1G77000.4 36.242 149 92 3 103 249 85 232 6.06e-16 77.8
Msa0045060 AT1G77000.4 35.115 131 83 2 146 275 103 232 3.05e-13 69.7
Msa0045060 AT1G77000.4 29.293 198 108 5 165 360 69 236 4.89e-12 66.2
Msa0045060 AT1G47056.1 25.776 419 199 16 8 347 31 416 1.27e-15 79.3
Msa0045060 AT1G55590.1 25.540 278 171 8 121 391 265 513 2.65e-14 75.1
Msa0045060 AT1G55590.1 25.484 310 198 9 75 361 243 542 7.02e-13 70.9
Msa0045060 AT2G06040.1 27.686 242 143 5 95 307 496 734 7.76e-14 73.9
Msa0045060 AT5G21900.1 34.667 150 97 1 113 262 367 515 8.22e-14 73.6
Msa0045060 AT5G51370.1 27.937 315 164 12 35 291 46 355 3.25e-13 70.9
Msa0045060 AT1G80630.1 24.473 237 144 4 94 302 279 508 6.25e-13 70.9
Msa0045060 AT2G17020.2 27.817 284 184 7 121 388 72 350 3.52e-12 68.6
Msa0045060 AT2G17020.3 27.817 284 184 7 121 388 213 491 5.90e-12 67.8
Msa0045060 AT2G17020.1 26.866 335 216 9 77 388 196 524 8.98e-12 67.4
Msa0045060 AT5G67250.1 32.000 175 112 5 94 266 249 418 9.05e-12 67.4

Find 117 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGACGATGCAATGAAGTTTC+TGG 0.223020 1_1:+76728293 Msa0045060:CDS
TTGCGGATATTGCATCTTAC+TGG 0.249601 1_1:+76727940 Msa0045060:CDS
ACCTCACATGCTTCGTAAAA+TGG 0.250421 1_1:+76726833 Msa0045060:CDS
GATCTCGCTGTTATTGCTAA+TGG 0.255740 1_1:+76726936 Msa0045060:CDS
CGACGAGCTTCGTTCGATTC+TGG 0.287693 1_1:+76726707 Msa0045060:CDS
AACCCTAACCCCAACGATTT+GGG 0.289694 1_1:-76726602 None:intergenic
ATCTCGCTGTTATTGCTAAT+GGG 0.304684 1_1:+76726937 Msa0045060:CDS
GAATTTAGCCAACGATAATA+TGG 0.315400 1_1:-76728223 None:intergenic
AAACCCTAACCCCAACGATT+TGG 0.324107 1_1:-76726603 None:intergenic
ATACCAACCACTGTGATCTT+TGG 0.325643 1_1:-76728525 None:intergenic
ATAATAATTTACAGGAATTA+CGG 0.340518 1_1:+76727801 Msa0045060:intron
CACATCCAAGGACTGTAATA+AGG 0.340648 1_1:-76727857 None:intergenic
TGCGGAAAGCTTCTTCCTTT+CGG 0.341317 1_1:-76726802 None:intergenic
TGCATCTTCTGAAGTTGAAT+TGG 0.346452 1_1:-76726649 None:intergenic
AGCCCCAAATCGTTGGGGTT+AGG 0.364183 1_1:+76726599 Msa0045060:five_prime_UTR
GTCACTTCACAAATTTGTAT+TGG 0.369038 1_1:+76728947 Msa0045060:three_prime_UTR
TGTTAGATTGCTGCAAAGTC+GGG 0.370194 1_1:+76728193 Msa0045060:CDS
GGCTAAATTCTGTGATAATC+TGG 0.376470 1_1:+76728236 Msa0045060:CDS
GCCCCAAATCGTTGGGGTTA+GGG 0.377928 1_1:+76726600 Msa0045060:five_prime_UTR
AAAATTAGCCCCAAATCGTT+GGG 0.378032 1_1:+76726593 Msa0045060:five_prime_UTR
TCTTTCCTTATTACAGTCCT+TGG 0.381839 1_1:+76727852 Msa0045060:CDS
CTTTGATCATTGGTGGCTGC+CGG 0.396535 1_1:+76728262 Msa0045060:CDS
AGACAAGGAAACGTTTGGTT+TGG 0.404540 1_1:+76726749 Msa0045060:CDS
ATGCATAAACGAAGCATTAA+CGG 0.407146 1_1:+76726683 Msa0045060:CDS
ATCTCACATCCAAGTATTCC+AGG 0.407256 1_1:-76728575 None:intergenic
ATAAGTGAACTTTCTTGATA+AGG 0.408878 1_1:+76728751 Msa0045060:three_prime_UTR
ATGCAGTAACCTGGAATACT+TGG 0.413143 1_1:+76728566 Msa0045060:CDS
ATTCATGTGCAACATGTATC+AGG 0.416319 1_1:+76728821 Msa0045060:three_prime_UTR
TTTACAGGAATTACGGATGT+TGG 0.428101 1_1:+76727808 Msa0045060:intron
TGGGGTTTCAAGTATTTGTA+AGG 0.428163 1_1:+76728140 Msa0045060:CDS
GGCGGATAGGTTCACACGCT+TGG 0.429354 1_1:+76726854 Msa0045060:CDS
TACTGGGTGCAGATTTGTTA+CGG 0.429968 1_1:+76727957 Msa0045060:CDS
TGCAGAAAGTTGACCGATAA+GGG 0.431000 1_1:+76727886 Msa0045060:CDS
CCGCAAGTCACAACAGCCTT+TGG 0.431251 1_1:-76727923 None:intergenic
AAGATCACAGTGGTTGGTAT+AGG 0.435567 1_1:+76728528 Msa0045060:CDS
CCTTGCAACAGTCAGGTAGA+TGG 0.439204 1_1:-76728641 None:intergenic
TTTGCAAGCACATTTGTGTT+CGG 0.446711 1_1:+76728911 Msa0045060:three_prime_UTR
TGGTTTGCAAGCGATGGCTT+CGG 0.452736 1_1:+76726769 Msa0045060:CDS
TGAGGAGAATTTATCAGTCC+TGG 0.454418 1_1:+76728788 Msa0045060:three_prime_UTR
CTGCAGAAAGTTGACCGATA+AGG 0.456570 1_1:+76727885 Msa0045060:CDS
CTCAATTTGCATAACTGTAA+AGG 0.456727 1_1:+76726978 Msa0045060:CDS
GTTGGTATAGGCATTCTTGC+GGG 0.459912 1_1:+76728540 Msa0045060:CDS
AACAGCGGACAATCCCTTAT+CGG 0.460958 1_1:-76727899 None:intergenic
AAATTAACCTTGCAACAGTC+AGG 0.464697 1_1:-76728648 None:intergenic
CTTTACAGTTATGCAAATTG+AGG 0.464854 1_1:-76726977 None:intergenic
GTTGAATTGGAAGACATTGA+AGG 0.469396 1_1:-76726636 None:intergenic
GCAGCAATGTCAGTGATGTT+GGG 0.471171 1_1:+76728121 Msa0045060:CDS
TTTACGAAGCATGTGAGGTC+CGG 0.473276 1_1:-76726829 None:intergenic
TTGTTAGATTGCTGCAAAGT+CGG 0.473818 1_1:+76728192 Msa0045060:CDS
GTGTCTCGTTCGTTCTATCC+TGG 0.476655 1_1:+76726900 Msa0045060:CDS
AAGGCTGGCCTTGATGAGGC+TGG 0.479159 1_1:+76728615 Msa0045060:CDS
TTGGTTTGGTTTGCAAGCGA+TGG 0.484765 1_1:+76726763 Msa0045060:CDS
CTGGAGACTTTGATCATTGG+TGG 0.485005 1_1:+76728255 Msa0045060:CDS
CTAATGGGTTTAGATGTTTG+AGG 0.485032 1_1:+76726952 Msa0045060:CDS
TGCAGCAATGTCAGTGATGT+TGG 0.486196 1_1:+76728120 Msa0045060:CDS
CTGTCGTAATTTAGAAGAGT+TGG 0.486468 1_1:+76728008 Msa0045060:CDS
ATGCAGAAACCTCGAGGCAC+TGG 0.493106 1_1:+76728404 Msa0045060:CDS
GATGTTGGAATGAACGCTAT+TGG 0.493592 1_1:+76727823 Msa0045060:CDS
ATCACTGTACTGATTGGTGT+TGG 0.494346 1_1:+76728847 Msa0045060:three_prime_UTR
TATAACCATGCTCACTTACA+TGG 0.501001 1_1:-76728982 None:intergenic
TGTCCACATATTACAAAGGC+TGG 0.510511 1_1:+76728600 Msa0045060:CDS
AGGCCAGCCTTTGTAATATG+TGG 0.513227 1_1:-76728603 None:intergenic
TGCGGATATTGCATCTTACT+GGG 0.514273 1_1:+76727941 Msa0045060:CDS
AATCTGGAGACTTTGATCAT+TGG 0.521970 1_1:+76728252 Msa0045060:CDS
TTAGAAGAGTTGGTATTGCA+AGG 0.525670 1_1:+76728018 Msa0045060:CDS
AGGTCTATCACTGTACTGAT+TGG 0.527433 1_1:+76728841 Msa0045060:three_prime_UTR
TGCGGGCAAATGCAGTAACC+TGG 0.530641 1_1:+76728557 Msa0045060:CDS
TTTGATCATTGGTGGCTGCC+GGG 0.532356 1_1:+76728263 Msa0045060:CDS
TTGAATTGGAAGACATTGAA+GGG 0.532701 1_1:-76726635 None:intergenic
AAGAAGCTTTCCGCACGTGC+CGG 0.534156 1_1:+76726810 Msa0045060:CDS
CATATAAGCAACGAAGAGCC+TGG 0.539989 1_1:+76728468 Msa0045060:CDS
GCCTTGCAAGTGGTTGCCTA+CGG 0.548217 1_1:+76728073 Msa0045060:CDS
TAATTGCTGACAGTGATACA+AGG 0.550656 1_1:-76729041 None:intergenic
GCACAAGTATCACTGACAAT+GGG 0.552325 1_1:+76728043 Msa0045060:CDS
AGGCTGGCCTTGATGAGGCT+GGG 0.557506 1_1:+76728616 Msa0045060:CDS
TGCACAAGTATCACTGACAA+TGG 0.559237 1_1:+76728042 Msa0045060:CDS
CCATCTACCTGACTGTTGCA+AGG 0.563688 1_1:+76728641 Msa0045060:CDS
GAGTATCAAAGAAGAACAGC+GGG 0.567869 1_1:-76728690 None:intergenic
AAGGTGTCTTTAGAAATTTG+AGG 0.570690 1_1:+76728770 Msa0045060:three_prime_UTR
TCCGTAGGCAACCACTTGCA+AGG 0.570981 1_1:-76728074 None:intergenic
ATTTGCCATGTAAGTGAGCA+TGG 0.571106 1_1:+76728977 Msa0045060:three_prime_UTR
CATGTGAGGTCCGGCACGTG+CGG 0.571811 1_1:-76726820 None:intergenic
TTGCATCGTCGGAGACATCC+CGG 0.573284 1_1:-76728281 None:intergenic
AACCTCGAGGCACTGGACAT+TGG 0.574344 1_1:+76728411 Msa0045060:CDS
TTCACATTTCTGAACCATTG+TGG 0.574962 1_1:+76726553 None:intergenic
GGTTGGTATAGGCATTCTTG+CGG 0.576590 1_1:+76728539 Msa0045060:CDS
AACGAGACACAGACTGAGCA+AGG 0.579972 1_1:-76726887 None:intergenic
CCAAAGGCTGTTGTGACTTG+CGG 0.582732 1_1:+76727923 Msa0045060:CDS
GGATGAAGCCATATTATCGT+TGG 0.585524 1_1:+76728215 Msa0045060:CDS
CAGAAACTTCATTGCATCGT+CGG 0.585674 1_1:-76728292 None:intergenic
GGATTGTCCGCTGTTGCCAA+AGG 0.592512 1_1:+76727907 Msa0045060:CDS
ACCCTAACCCCAACGATTTG+GGG 0.592993 1_1:-76726601 None:intergenic
ATCGGTCAACTTTCTGCAGT+AGG 0.593129 1_1:-76727881 None:intergenic
GATGGAACCCAGCCTCATCA+AGG 0.596633 1_1:-76728623 None:intergenic
TGTCCAAAGATCACAGTGGT+TGG 0.596825 1_1:+76728522 Msa0045060:CDS
AAAATCTTCAAACTCAAACC+AGG 0.602899 1_1:-76728486 None:intergenic
TACAAAGGCTGGCCTTGATG+AGG 0.613897 1_1:+76728611 Msa0045060:CDS
GTTAGATTGCTGCAAAGTCG+GGG 0.621383 1_1:+76728194 Msa0045060:CDS
CAGCAATGTCAGTGATGTTG+GGG 0.628191 1_1:+76728122 Msa0045060:CDS
TGCTTCGTAAAATGGCGGAT+AGG 0.632749 1_1:+76726841 Msa0045060:CDS
ATCATGTCCACATATTACAA+AGG 0.638990 1_1:+76728596 Msa0045060:CDS
ACATGAATACTAACATCACC+AGG 0.641445 1_1:-76728806 None:intergenic
GTTGGGAATTAATGCCACAA+TGG 0.644817 1_1:-76726567 None:intergenic
TTCGGTTACAGAGCACCGAA+AGG 0.647830 1_1:+76726787 Msa0045060:CDS
GGACATTGGTTGCTGTGAAG+AGG 0.652757 1_1:+76728425 Msa0045060:CDS
AAATTAGCCCCAAATCGTTG+GGG 0.653064 1_1:+76726594 Msa0045060:five_prime_UTR
ACAACAGCCTTTGGCAACAG+CGG 0.655606 1_1:-76727914 None:intergenic
AATTGCTGACAGTGATACAA+GGG 0.662699 1_1:-76729040 None:intergenic
AGATCAGAATCAGTAACACC+AGG 0.663167 1_1:-76726918 None:intergenic
TCTGCAGTAGGACACATCCA+AGG 0.671070 1_1:-76727869 None:intergenic
AAGTCAATGCAGAAACCTCG+AGG 0.677404 1_1:+76728398 Msa0045060:CDS
TCACATGCTTCGTAAAATGG+CGG 0.678714 1_1:+76726836 Msa0045060:CDS
AACCAATGTCCAGTGCCTCG+AGG 0.681333 1_1:-76728413 None:intergenic
AGAGTATCAAAGAAGAACAG+CGG 0.685218 1_1:-76728691 None:intergenic
TGCTTCGTTTATGCATAACG+CGG 0.712266 1_1:-76726676 None:intergenic
GGGCTGATAAGCCTTGCAAG+TGG 0.747702 1_1:+76728063 Msa0045060:CDS
TAATTGTCCAAAGATCACAG+TGG 0.819306 1_1:+76728518 Msa0045060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGTTTTAAATATTCAATT+TGG + chr1_1:76727730-76727749 Msa0045060:intron 10.0%
!!! ATCTTTTTGTTTAATTGTTT+CGG + chr1_1:76727138-76727157 Msa0045060:intron 15.0%
!! TAATAAGAGAAAACATTAAA+TGG - chr1_1:76727711-76727730 None:intergenic 15.0%
!! ATAATAATTTACAGGAATTA+CGG + chr1_1:76727801-76727820 Msa0045060:intron 15.0%
!! TTCAATCAAATTGAGATTAA+TGG + chr1_1:76727759-76727778 Msa0045060:intron 20.0%
!! TCAATCAAATTGAGATTAAT+GGG + chr1_1:76727760-76727779 Msa0045060:intron 20.0%
!! GTGTGTTAATAATAATTTAC+AGG + chr1_1:76727793-76727812 Msa0045060:intron 20.0%
!!! GGTTATATCTTTTATTTAGA+AGG + chr1_1:76728998-76729017 Msa0045060:three_prime_UTR 20.0%
! TTTGTTTAATTGTTTCGGTT+CGG + chr1_1:76727143-76727162 Msa0045060:intron 25.0%
! TAAGTAGTTATGCTTTACTA+TGG + chr1_1:76727417-76727436 Msa0045060:intron 25.0%
! CAATCAAATTGAGATTAATG+GGG + chr1_1:76727761-76727780 Msa0045060:intron 25.0%
!! TGTTGCAAGGTTAATTTTAA+TGG + chr1_1:76728654-76728673 Msa0045060:CDS 25.0%
! ATAAGTGAACTTTCTTGATA+AGG + chr1_1:76728751-76728770 Msa0045060:three_prime_UTR 25.0%
!!! TTTTATTTAGAAGGAAAGCA+TGG + chr1_1:76729007-76729026 Msa0045060:three_prime_UTR 25.0%
TTGAATTGGAAGACATTGAA+GGG - chr1_1:76726638-76726657 None:intergenic 30.0%
! ATGCATAAACGAAGCATTAA+CGG + chr1_1:76726683-76726702 Msa0045060:CDS 30.0%
CTTTACAGTTATGCAAATTG+AGG - chr1_1:76726980-76726999 None:intergenic 30.0%
CTCAATTTGCATAACTGTAA+AGG + chr1_1:76726978-76726997 Msa0045060:CDS 30.0%
TTGTTTAATTGTTTCGGTTC+GGG + chr1_1:76727144-76727163 Msa0045060:intron 30.0%
TCATTGAGAGTCTAACTTAA+CGG + chr1_1:76727280-76727299 Msa0045060:intron 30.0%
ATTTCACTCAATCTTCTCAT+TGG - chr1_1:76727348-76727367 None:intergenic 30.0%
AAGCATAACTACTTAAGAGT+AGG - chr1_1:76727412-76727431 None:intergenic 30.0%
! AAAGTACTAGTTCATTAGGT+AGG - chr1_1:76727497-76727516 None:intergenic 30.0%
TACCTAATGAACTAGTACTT+TGG + chr1_1:76727496-76727515 Msa0045060:intron 30.0%
ACCTAATGAACTAGTACTTT+GGG + chr1_1:76727497-76727516 Msa0045060:intron 30.0%
TGTCTAAAAATTTGATCCGT+AGG - chr1_1:76728092-76728111 None:intergenic 30.0%
GAATTTAGCCAACGATAATA+TGG - chr1_1:76728226-76728245 None:intergenic 30.0%
GAAACAAGCTTAAAAACTTG+AGG + chr1_1:76728328-76728347 Msa0045060:CDS 30.0%
TTAAAAACTTGAGGATGGAT+TGG + chr1_1:76728337-76728356 Msa0045060:CDS 30.0%
AAAATCTTCAAACTCAAACC+AGG - chr1_1:76728489-76728508 None:intergenic 30.0%
ATCATGTCCACATATTACAA+AGG + chr1_1:76728596-76728615 Msa0045060:CDS 30.0%
! AAGGTGTCTTTAGAAATTTG+AGG + chr1_1:76728770-76728789 Msa0045060:three_prime_UTR 30.0%
GTCACTTCACAAATTTGTAT+TGG + chr1_1:76728947-76728966 Msa0045060:three_prime_UTR 30.0%
AAAAATTAGCCCCAAATCGT+TGG + chr1_1:76726592-76726611 Msa0045060:five_prime_UTR 35.0%
AAAATTAGCCCCAAATCGTT+GGG + chr1_1:76726593-76726612 Msa0045060:five_prime_UTR 35.0%
GTTGAATTGGAAGACATTGA+AGG - chr1_1:76726639-76726658 None:intergenic 35.0%
!! TGCATCTTCTGAAGTTGAAT+TGG - chr1_1:76726652-76726671 None:intergenic 35.0%
!! GTCTTTTTCGCTATCAACTT+TGG - chr1_1:76726733-76726752 None:intergenic 35.0%
!! AGTTGATAGCGAAAAAGACA+AGG + chr1_1:76726734-76726753 Msa0045060:CDS 35.0%
GAAAAAGACAAGGAAACGTT+TGG + chr1_1:76726744-76726763 Msa0045060:CDS 35.0%
ATCTCGCTGTTATTGCTAAT+GGG + chr1_1:76726937-76726956 Msa0045060:CDS 35.0%
!! CTAATGGGTTTAGATGTTTG+AGG + chr1_1:76726952-76726971 Msa0045060:CDS 35.0%
CTTACGAGCATAAACCTAAA+GGG - chr1_1:76727250-76727269 None:intergenic 35.0%
TCTTACGAGCATAAACCTAA+AGG - chr1_1:76727251-76727270 None:intergenic 35.0%
AGAGTCTAACTTAACGGAAA+GGG + chr1_1:76727286-76727305 Msa0045060:intron 35.0%
! TCCCAAAGTACTAGTTCATT+AGG - chr1_1:76727501-76727520 None:intergenic 35.0%
GTGTGATTACTGATGATTGA+AGG + chr1_1:76727678-76727697 Msa0045060:intron 35.0%
TTTACAGGAATTACGGATGT+TGG + chr1_1:76727808-76727827 Msa0045060:intron 35.0%
TCTTTCCTTATTACAGTCCT+TGG + chr1_1:76727852-76727871 Msa0045060:CDS 35.0%
CTGTCGTAATTTAGAAGAGT+TGG + chr1_1:76728008-76728027 Msa0045060:CDS 35.0%
!! TTAGAAGAGTTGGTATTGCA+AGG + chr1_1:76728018-76728037 Msa0045060:CDS 35.0%
! TGGGGTTTCAAGTATTTGTA+AGG + chr1_1:76728140-76728159 Msa0045060:CDS 35.0%
TTGTTAGATTGCTGCAAAGT+CGG + chr1_1:76728192-76728211 Msa0045060:CDS 35.0%
GGCTAAATTCTGTGATAATC+TGG + chr1_1:76728236-76728255 Msa0045060:CDS 35.0%
AATCTGGAGACTTTGATCAT+TGG + chr1_1:76728252-76728271 Msa0045060:CDS 35.0%
CAAGCTTAAAAACTTGAGGA+TGG + chr1_1:76728332-76728351 Msa0045060:CDS 35.0%
TAATTGTCCAAAGATCACAG+TGG + chr1_1:76728518-76728537 Msa0045060:CDS 35.0%
AAATTAACCTTGCAACAGTC+AGG - chr1_1:76728651-76728670 None:intergenic 35.0%
! AGAGTATCAAAGAAGAACAG+CGG - chr1_1:76728694-76728713 None:intergenic 35.0%
ACATGAATACTAACATCACC+AGG - chr1_1:76728809-76728828 None:intergenic 35.0%
ATTCATGTGCAACATGTATC+AGG + chr1_1:76728821-76728840 Msa0045060:three_prime_UTR 35.0%
TTTGCAAGCACATTTGTGTT+CGG + chr1_1:76728911-76728930 Msa0045060:three_prime_UTR 35.0%
TATAACCATGCTCACTTACA+TGG - chr1_1:76728985-76729004 None:intergenic 35.0%
AATTGCTGACAGTGATACAA+GGG - chr1_1:76729043-76729062 None:intergenic 35.0%
TAATTGCTGACAGTGATACA+AGG - chr1_1:76729044-76729063 None:intergenic 35.0%
GTTGGGAATTAATGCCACAA+TGG - chr1_1:76726570-76726589 None:intergenic 40.0%
! TTGGGGCTAATTTTTGCGTT+GGG - chr1_1:76726587-76726606 None:intergenic 40.0%
!! TTTGGGGCTAATTTTTGCGT+TGG - chr1_1:76726588-76726607 None:intergenic 40.0%
AAATTAGCCCCAAATCGTTG+GGG + chr1_1:76726594-76726613 Msa0045060:five_prime_UTR 40.0%
TGCTTCGTTTATGCATAACG+CGG - chr1_1:76726679-76726698 None:intergenic 40.0%
AGACAAGGAAACGTTTGGTT+TGG + chr1_1:76726749-76726768 Msa0045060:CDS 40.0%
ACCTCACATGCTTCGTAAAA+TGG + chr1_1:76726833-76726852 Msa0045060:CDS 40.0%
TCACATGCTTCGTAAAATGG+CGG + chr1_1:76726836-76726855 Msa0045060:CDS 40.0%
AGATCAGAATCAGTAACACC+AGG - chr1_1:76726921-76726940 None:intergenic 40.0%
GATCTCGCTGTTATTGCTAA+TGG + chr1_1:76726936-76726955 Msa0045060:CDS 40.0%
GCTAACAAGTCTCTCTTCTT+AGG - chr1_1:76727182-76727201 None:intergenic 40.0%
GAGAGTCTAACTTAACGGAA+AGG + chr1_1:76727285-76727304 Msa0045060:intron 40.0%
ATATCCACAGAGGGTTTGAT+TGG + chr1_1:76727309-76727328 Msa0045060:intron 40.0%
GATTGAGTGAAATGTCACCT+AGG + chr1_1:76727355-76727374 Msa0045060:intron 40.0%
GCTTATAAGCCTAACTTCCT+AGG - chr1_1:76727463-76727482 None:intergenic 40.0%
AAGTTAGGCTTATAAGCCAG+AGG + chr1_1:76727466-76727485 Msa0045060:intron 40.0%
AGTTAGGCTTATAAGCCAGA+GGG + chr1_1:76727467-76727486 Msa0045060:intron 40.0%
! TTTGGGATAGACTATCTCGT+TGG + chr1_1:76727514-76727533 Msa0045060:intron 40.0%
ACTGCAAACCGAGAGTTATT+GGG - chr1_1:76727555-76727574 None:intergenic 40.0%
AACTGCAAACCGAGAGTTAT+TGG - chr1_1:76727556-76727575 None:intergenic 40.0%
GATTACTGATGATTGAAGGC+TGG + chr1_1:76727682-76727701 Msa0045060:intron 40.0%
GATGTTGGAATGAACGCTAT+TGG + chr1_1:76727823-76727842 Msa0045060:CDS 40.0%
CACATCCAAGGACTGTAATA+AGG - chr1_1:76727860-76727879 None:intergenic 40.0%
TGCAGAAAGTTGACCGATAA+GGG + chr1_1:76727886-76727905 Msa0045060:CDS 40.0%
TTGCGGATATTGCATCTTAC+TGG + chr1_1:76727940-76727959 Msa0045060:CDS 40.0%
TGCGGATATTGCATCTTACT+GGG + chr1_1:76727941-76727960 Msa0045060:CDS 40.0%
!! TACTGGGTGCAGATTTGTTA+CGG + chr1_1:76727957-76727976 Msa0045060:CDS 40.0%
TGCACAAGTATCACTGACAA+TGG + chr1_1:76728042-76728061 Msa0045060:CDS 40.0%
GCACAAGTATCACTGACAAT+GGG + chr1_1:76728043-76728062 Msa0045060:CDS 40.0%
TGTTAGATTGCTGCAAAGTC+GGG + chr1_1:76728193-76728212 Msa0045060:CDS 40.0%
GGATGAAGCCATATTATCGT+TGG + chr1_1:76728215-76728234 Msa0045060:CDS 40.0%
CAGAAACTTCATTGCATCGT+CGG - chr1_1:76728295-76728314 None:intergenic 40.0%
ATACCAACCACTGTGATCTT+TGG - chr1_1:76728528-76728547 None:intergenic 40.0%
! AAGATCACAGTGGTTGGTAT+AGG + chr1_1:76728528-76728547 Msa0045060:CDS 40.0%
ATGCAGTAACCTGGAATACT+TGG + chr1_1:76728566-76728585 Msa0045060:CDS 40.0%
ATCTCACATCCAAGTATTCC+AGG - chr1_1:76728578-76728597 None:intergenic 40.0%
TGTCCACATATTACAAAGGC+TGG + chr1_1:76728600-76728619 Msa0045060:CDS 40.0%
GAGTATCAAAGAAGAACAGC+GGG - chr1_1:76728693-76728712 None:intergenic 40.0%
TGAGGAGAATTTATCAGTCC+TGG + chr1_1:76728788-76728807 Msa0045060:three_prime_UTR 40.0%
! AGGTCTATCACTGTACTGAT+TGG + chr1_1:76728841-76728860 Msa0045060:three_prime_UTR 40.0%
!! ATCACTGTACTGATTGGTGT+TGG + chr1_1:76728847-76728866 Msa0045060:three_prime_UTR 40.0%
ATTTGCCATGTAAGTGAGCA+TGG + chr1_1:76728977-76728996 Msa0045060:three_prime_UTR 40.0%
AACCCTAACCCCAACGATTT+GGG - chr1_1:76726605-76726624 None:intergenic 45.0%
AAACCCTAACCCCAACGATT+TGG - chr1_1:76726606-76726625 None:intergenic 45.0%
!! TTGGTTTGGTTTGCAAGCGA+TGG + chr1_1:76726763-76726782 Msa0045060:CDS 45.0%
TGCGGAAAGCTTCTTCCTTT+CGG - chr1_1:76726805-76726824 None:intergenic 45.0%
TTTACGAAGCATGTGAGGTC+CGG - chr1_1:76726832-76726851 None:intergenic 45.0%
!! GCCATTTTACGAAGCATGTG+AGG - chr1_1:76726837-76726856 None:intergenic 45.0%
!! TGCTTCGTAAAATGGCGGAT+AGG + chr1_1:76726841-76726860 Msa0045060:CDS 45.0%
!! AGAAGAGAGACTTGTTAGCC+AGG + chr1_1:76727183-76727202 Msa0045060:intron 45.0%
!! GAAGAGAGACTTGTTAGCCA+GGG + chr1_1:76727184-76727203 Msa0045060:intron 45.0%
!! AAGAGAGACTTGTTAGCCAG+GGG + chr1_1:76727185-76727204 Msa0045060:intron 45.0%
AGAGTCTCACCTAGGAAGTT+AGG + chr1_1:76727451-76727470 Msa0045060:intron 45.0%
CTTGTGCACCCAATAACTCT+CGG + chr1_1:76727544-76727563 Msa0045060:intron 45.0%
TTGCAGTTGTAGATGCAGAG+AGG + chr1_1:76727568-76727587 Msa0045060:intron 45.0%
ATCGGTCAACTTTCTGCAGT+AGG - chr1_1:76727884-76727903 None:intergenic 45.0%
CTGCAGAAAGTTGACCGATA+AGG + chr1_1:76727885-76727904 Msa0045060:CDS 45.0%
AACAGCGGACAATCCCTTAT+CGG - chr1_1:76727902-76727921 None:intergenic 45.0%
TGCAGCAATGTCAGTGATGT+TGG + chr1_1:76728120-76728139 Msa0045060:CDS 45.0%
GCAGCAATGTCAGTGATGTT+GGG + chr1_1:76728121-76728140 Msa0045060:CDS 45.0%
CAGCAATGTCAGTGATGTTG+GGG + chr1_1:76728122-76728141 Msa0045060:CDS 45.0%
GTTAGATTGCTGCAAAGTCG+GGG + chr1_1:76728194-76728213 Msa0045060:CDS 45.0%
CTGGAGACTTTGATCATTGG+TGG + chr1_1:76728255-76728274 Msa0045060:CDS 45.0%
CGACGATGCAATGAAGTTTC+TGG + chr1_1:76728293-76728312 Msa0045060:CDS 45.0%
AAGTCAATGCAGAAACCTCG+AGG + chr1_1:76728398-76728417 Msa0045060:CDS 45.0%
CATATAAGCAACGAAGAGCC+TGG + chr1_1:76728468-76728487 Msa0045060:CDS 45.0%
TGTCCAAAGATCACAGTGGT+TGG + chr1_1:76728522-76728541 Msa0045060:CDS 45.0%
! GGTTGGTATAGGCATTCTTG+CGG + chr1_1:76728539-76728558 Msa0045060:CDS 45.0%
GTTGGTATAGGCATTCTTGC+GGG + chr1_1:76728540-76728559 Msa0045060:CDS 45.0%
AGGCCAGCCTTTGTAATATG+TGG - chr1_1:76728606-76728625 None:intergenic 45.0%
ACCCTAACCCCAACGATTTG+GGG - chr1_1:76726604-76726623 None:intergenic 50.0%
! TGGTTTGCAAGCGATGGCTT+CGG + chr1_1:76726769-76726788 Msa0045060:CDS 50.0%
!! TTCGGTTACAGAGCACCGAA+AGG + chr1_1:76726787-76726806 Msa0045060:CDS 50.0%
AACGAGACACAGACTGAGCA+AGG - chr1_1:76726890-76726909 None:intergenic 50.0%
GTGTCTCGTTCGTTCTATCC+TGG + chr1_1:76726900-76726919 Msa0045060:CDS 50.0%
!! GGATTTTCCCACTAGTGGAC+TGG + chr1_1:76727206-76727225 Msa0045060:intron 50.0%
CGAAACACCAGTCCACTAGT+GGG - chr1_1:76727216-76727235 None:intergenic 50.0%
!! CCACTAGTGGACTGGTGTTT+CGG + chr1_1:76727214-76727233 Msa0045060:intron 50.0%
!! CACTAGTGGACTGGTGTTTC+GGG + chr1_1:76727215-76727234 Msa0045060:intron 50.0%
ACGGAAAGGGATATCCACAG+AGG + chr1_1:76727299-76727318 Msa0045060:intron 50.0%
CGGAAAGGGATATCCACAGA+GGG + chr1_1:76727300-76727319 Msa0045060:intron 50.0%
TCCACAGAGGGTTTGATTGG+TGG + chr1_1:76727312-76727331 Msa0045060:intron 50.0%
TCCACCAATCAAACCCTCTG+TGG - chr1_1:76727316-76727335 None:intergenic 50.0%
CAGAGGGTTTGATTGGTGGA+TGG + chr1_1:76727316-76727335 Msa0045060:intron 50.0%
TGTCACCTAGGAATGTGTCG+TGG + chr1_1:76727367-76727386 Msa0045060:intron 50.0%
TCACTCCACGACACATTCCT+AGG - chr1_1:76727375-76727394 None:intergenic 50.0%
GTCGTGGAGTGAAAGTTGTG+AGG + chr1_1:76727383-76727402 Msa0045060:intron 50.0%
CATTAGGTAGGAGAACCCTC+TGG - chr1_1:76727485-76727504 None:intergenic 50.0%
TCTGCAGTAGGACACATCCA+AGG - chr1_1:76727872-76727891 None:intergenic 50.0%
ACAACAGCCTTTGGCAACAG+CGG - chr1_1:76727917-76727936 None:intergenic 50.0%
CCAAAGGCTGTTGTGACTTG+CGG + chr1_1:76727923-76727942 Msa0045060:CDS 50.0%
! CTTTGATCATTGGTGGCTGC+CGG + chr1_1:76728262-76728281 Msa0045060:CDS 50.0%
! TTTGATCATTGGTGGCTGCC+GGG + chr1_1:76728263-76728282 Msa0045060:CDS 50.0%
! GGACATTGGTTGCTGTGAAG+AGG + chr1_1:76728425-76728444 Msa0045060:CDS 50.0%
!! TACAAAGGCTGGCCTTGATG+AGG + chr1_1:76728611-76728630 Msa0045060:CDS 50.0%
CCTTGCAACAGTCAGGTAGA+TGG - chr1_1:76728644-76728663 None:intergenic 50.0%
CCATCTACCTGACTGTTGCA+AGG + chr1_1:76728641-76728660 Msa0045060:CDS 50.0%
AGCCCCAAATCGTTGGGGTT+AGG + chr1_1:76726599-76726618 Msa0045060:five_prime_UTR 55.0%
GCCCCAAATCGTTGGGGTTA+GGG + chr1_1:76726600-76726619 Msa0045060:five_prime_UTR 55.0%
CGACGAGCTTCGTTCGATTC+TGG + chr1_1:76726707-76726726 Msa0045060:CDS 55.0%
AAGAAGCTTTCCGCACGTGC+CGG + chr1_1:76726810-76726829 Msa0045060:CDS 55.0%
CCACTAGTGGGAAAATCCCC+TGG - chr1_1:76727204-76727223 None:intergenic 55.0%
! CCAGGGGATTTTCCCACTAG+TGG + chr1_1:76727201-76727220 Msa0045060:intron 55.0%
CCGAAACACCAGTCCACTAG+TGG - chr1_1:76727217-76727236 None:intergenic 55.0%
!! TCGGGACTAGCTCTCCCTTT+AGG + chr1_1:76727233-76727252 Msa0045060:intron 55.0%
CTAGGTGAGACTCTCGCATG+TGG - chr1_1:76727445-76727464 None:intergenic 55.0%
CACATGCGAGAGTCTCACCT+AGG + chr1_1:76727443-76727462 Msa0045060:intron 55.0%
GGATTGTCCGCTGTTGCCAA+AGG + chr1_1:76727907-76727926 Msa0045060:CDS 55.0%
CCGCAAGTCACAACAGCCTT+TGG - chr1_1:76727926-76727945 None:intergenic 55.0%
GGGCTGATAAGCCTTGCAAG+TGG + chr1_1:76728063-76728082 Msa0045060:CDS 55.0%
GCCTTGCAAGTGGTTGCCTA+CGG + chr1_1:76728073-76728092 Msa0045060:CDS 55.0%
TCCGTAGGCAACCACTTGCA+AGG - chr1_1:76728077-76728096 None:intergenic 55.0%
TTGCATCGTCGGAGACATCC+CGG - chr1_1:76728284-76728303 None:intergenic 55.0%
ATGCAGAAACCTCGAGGCAC+TGG + chr1_1:76728404-76728423 Msa0045060:CDS 55.0%
!! AACCTCGAGGCACTGGACAT+TGG + chr1_1:76728411-76728430 Msa0045060:CDS 55.0%
AACCAATGTCCAGTGCCTCG+AGG - chr1_1:76728416-76728435 None:intergenic 55.0%
TGCGGGCAAATGCAGTAACC+TGG + chr1_1:76728557-76728576 Msa0045060:CDS 55.0%
GATGGAACCCAGCCTCATCA+AGG - chr1_1:76728626-76728645 None:intergenic 55.0%
GGCGGATAGGTTCACACGCT+TGG + chr1_1:76726854-76726873 Msa0045060:CDS 60.0%
!! AAGGCTGGCCTTGATGAGGC+TGG + chr1_1:76728615-76728634 Msa0045060:CDS 60.0%
!! AGGCTGGCCTTGATGAGGCT+GGG + chr1_1:76728616-76728635 Msa0045060:CDS 60.0%
CATGTGAGGTCCGGCACGTG+CGG - chr1_1:76726823-76726842 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 76726564 76729084 76726564 ID=Msa0045060;Name=Msa0045060
chr1_1 mRNA 76726564 76729084 76726564 ID=Msa0045060-mRNA-1;Parent=Msa0045060;Name=Msa0045060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=78|1|1|1|1|1|2|377|416
chr1_1 exon 76726564 76726999 76726564 ID=Msa0045060-mRNA-1:exon:26130;Parent=Msa0045060-mRNA-1
chr1_1 exon 76727815 76729084 76727815 ID=Msa0045060-mRNA-1:exon:26131;Parent=Msa0045060-mRNA-1
chr1_1 five_prime_UTR 76726564 76726641 76726564 ID=Msa0045060-mRNA-1:five_prime_utr;Parent=Msa0045060-mRNA-1
chr1_1 CDS 76726642 76726999 76726642 ID=Msa0045060-mRNA-1:cds;Parent=Msa0045060-mRNA-1
chr1_1 CDS 76727815 76728707 76727815 ID=Msa0045060-mRNA-1:cds;Parent=Msa0045060-mRNA-1
chr1_1 three_prime_UTR 76728708 76729084 76728708 ID=Msa0045060-mRNA-1:three_prime_utr;Parent=Msa0045060-mRNA-1
Gene Sequence

>Msa0045060

ATGTCTTCCAATTCAACTTCAGAAGATGCAATATCCGCGTTATGCATAAACGAAGCATTAACGGACGACGAGCTTCGTTCGATTCTGGCCAAAGTTGATAGCGAAAAAGACAAGGAAACGTTTGGTTTGGTTTGCAAGCGATGGCTTCGGTTACAGAGCACCGAAAGGAAGAAGCTTTCCGCACGTGCCGGACCTCACATGCTTCGTAAAATGGCGGATAGGTTCACACGCTTGGTTGAATTAGACCTTGCTCAGTCTGTGTCTCGTTCGTTCTATCCTGGTGTTACTGATTCTGATCTCGCTGTTATTGCTAATGGGTTTAGATGTTTGAGGATCCTCAATTTGCATAACTGTAAAGGAATTACGGATGTTGGAATGAACGCTATTGGCGACTGTCTTTCCTTATTACAGTCCTTGGATGTGTCCTACTGCAGAAAGTTGACCGATAAGGGATTGTCCGCTGTTGCCAAAGGCTGTTGTGACTTGCGGATATTGCATCTTACTGGGTGCAGATTTGTTACGGATAGTATACTAGAAGCACTTTCTAAAAACTGTCGTAATTTAGAAGAGTTGGTATTGCAAGGATGCACAAGTATCACTGACAATGGGCTGATAAGCCTTGCAAGTGGTTGCCTACGGATCAAATTTTTAGACATCAGTAAATGCAGCAATGTCAGTGATGTTGGGGTTTCAAGTATTTGTAAGGCTTGTTCTTCTTCTCTCAAGACATTGAAATTGTTAGATTGCTGCAAAGTCGGGGATGAAGCCATATTATCGTTGGCTAAATTCTGTGATAATCTGGAGACTTTGATCATTGGTGGCTGCCGGGATGTCTCCGACGATGCAATGAAGTTTCTGGCTACTGCTTGTAGAAACAAGCTTAAAAACTTGAGGATGGATTGGTGTCTAAACATTTCTGACTCTTCATTGAGCTGTATTTTAAGTCAATGCAGAAACCTCGAGGCACTGGACATTGGTTGCTGTGAAGAGGTGACAGATACTGCTTTTCATCATATAAGCAACGAAGAGCCTGGTTTGAGTTTGAAGATTTTGAAAGTTAGTAATTGTCCAAAGATCACAGTGGTTGGTATAGGCATTCTTGCGGGCAAATGCAGTAACCTGGAATACTTGGATGTGAGATCATGTCCACATATTACAAAGGCTGGCCTTGATGAGGCTGGGTTCCATCTACCTGACTGTTGCAAGGTTAATTTTAATGGTAGCATCAATGAGCCCGCTGTTCTTCTTTGA
Protein sequence

>Msa0045060

MSSNSTSEDAISALCINEALTDDELRSILAKVDSEKDKETFGLVCKRWLRLQSTERKKLSARAGPHMLRKMADRFTRLVELDLAQSVSRSFYPGVTDSDLAVIANGFRCLRILNLHNCKGITDVGMNAIGDCLSLLQSLDVSYCRKLTDKGLSAVAKGCCDLRILHLTGCRFVTDSILEALSKNCRNLEELVLQGCTSITDNGLISLASGCLRIKFLDISKCSNVSDVGVSSICKACSSSLKTLKLLDCCKVGDEAILSLAKFCDNLETLIIGGCRDVSDDAMKFLATACRNKLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDTAFHHISNEEPGLSLKILKVSNCPKITVVGIGILAGKCSNLEYLDVRSCPHITKAGLDEAGFHLPDCCKVNFNGSINEPAVLL*