Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045240 | sp|Q9FMW4|GEML8_ARATH | 59.589 | 146 | 59 | 0 | 245 | 390 | 69 | 214 | 2.58e-58 | 192 |
| Msa0045240 | sp|Q9FMW4|GEML8_ARATH | 47.423 | 194 | 96 | 3 | 19 | 210 | 12 | 201 | 9.48e-55 | 183 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045240 | A0A371GW26 | 59.179 | 414 | 116 | 7 | 3 | 392 | 250 | 634 | 1.40e-157 | 468 |
| Msa0045240 | A0A371GW26 | 59.564 | 413 | 114 | 8 | 2 | 390 | 59 | 442 | 3.16e-152 | 454 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045240 | Msa1416180 | 0.823418 | 1.399938e-53 | -8.615850e-47 |
| Msa0045240 | Msa1441710 | 0.851787 | 7.068991e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045240 | MtrunA17_Chr1g0212171 | 90.909 | 209 | 15 | 1 | 1 | 209 | 1 | 205 | 5.53e-134 | 383 |
| Msa0045240 | MtrunA17_Chr1g0212171 | 85.475 | 179 | 22 | 1 | 218 | 396 | 51 | 225 | 3.95e-107 | 315 |
| Msa0045240 | MtrunA17_Chr1g0212181 | 79.426 | 209 | 36 | 2 | 1 | 209 | 1 | 202 | 8.38e-115 | 334 |
| Msa0045240 | MtrunA17_Chr1g0212181 | 85.484 | 186 | 23 | 1 | 219 | 404 | 49 | 230 | 1.06e-111 | 327 |
| Msa0045240 | MtrunA17_Chr1g0212121 | 76.190 | 210 | 43 | 2 | 1 | 210 | 1 | 203 | 1.58e-112 | 328 |
| Msa0045240 | MtrunA17_Chr1g0212121 | 78.857 | 175 | 33 | 1 | 218 | 392 | 48 | 218 | 2.39e-95 | 284 |
| Msa0045240 | MtrunA17_Chr1g0212091 | 53.521 | 213 | 89 | 5 | 1 | 210 | 1 | 206 | 4.05e-69 | 218 |
| Msa0045240 | MtrunA17_Chr1g0212091 | 58.929 | 168 | 65 | 1 | 226 | 393 | 59 | 222 | 2.75e-66 | 210 |
| Msa0045240 | MtrunA17_Chr1g0162171 | 57.219 | 187 | 66 | 2 | 216 | 392 | 41 | 223 | 7.44e-68 | 214 |
| Msa0045240 | MtrunA17_Chr1g0162171 | 51.389 | 216 | 84 | 4 | 5 | 210 | 4 | 208 | 1.60e-66 | 211 |
| Msa0045240 | MtrunA17_Chr8g0388871 | 46.561 | 189 | 95 | 3 | 206 | 392 | 1 | 185 | 1.70e-50 | 168 |
| Msa0045240 | MtrunA17_Chr8g0388871 | 50.993 | 151 | 69 | 2 | 60 | 209 | 23 | 169 | 2.33e-43 | 149 |
| Msa0045240 | MtrunA17_Chr6g0481891 | 50.000 | 158 | 75 | 1 | 236 | 393 | 47 | 200 | 3.50e-47 | 160 |
| Msa0045240 | MtrunA17_Chr6g0481891 | 42.222 | 180 | 95 | 2 | 30 | 209 | 13 | 183 | 1.36e-40 | 143 |
| Msa0045240 | MtrunA17_Chr1g0212111 | 61.261 | 111 | 43 | 0 | 282 | 392 | 47 | 157 | 4.24e-41 | 143 |
| Msa0045240 | MtrunA17_Chr1g0212111 | 62.500 | 96 | 36 | 0 | 115 | 210 | 47 | 142 | 4.44e-35 | 127 |
| Msa0045240 | MtrunA17_Chr1g0212131 | 84.615 | 65 | 10 | 0 | 329 | 393 | 1 | 65 | 2.82e-33 | 119 |
| Msa0045240 | MtrunA17_Chr1g0212131 | 95.833 | 48 | 2 | 0 | 162 | 209 | 1 | 48 | 1.82e-26 | 100 |
| Msa0045240 | MtrunA17_Chr7g0251801 | 37.162 | 148 | 93 | 0 | 244 | 391 | 129 | 276 | 5.06e-30 | 117 |
| Msa0045240 | MtrunA17_Chr7g0251801 | 34.839 | 155 | 97 | 1 | 56 | 210 | 112 | 262 | 4.00e-28 | 112 |
| Msa0045240 | MtrunA17_Chr8g0367701 | 35.897 | 156 | 95 | 2 | 59 | 214 | 109 | 259 | 7.08e-30 | 116 |
| Msa0045240 | MtrunA17_Chr8g0367701 | 35.616 | 146 | 93 | 1 | 244 | 389 | 123 | 267 | 2.09e-28 | 112 |
| Msa0045240 | MtrunA17_Chr3g0133221 | 34.932 | 146 | 94 | 1 | 244 | 389 | 111 | 255 | 5.59e-29 | 113 |
| Msa0045240 | MtrunA17_Chr3g0133221 | 38.346 | 133 | 81 | 1 | 77 | 209 | 111 | 242 | 6.86e-29 | 113 |
| Msa0045240 | MtrunA17_Chr2g0315771 | 32.418 | 182 | 115 | 3 | 214 | 391 | 50 | 227 | 3.46e-22 | 94.7 |
| Msa0045240 | MtrunA17_Chr2g0315771 | 34.437 | 151 | 94 | 2 | 60 | 209 | 66 | 212 | 3.22e-20 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045240 | AT5G23370.1 | 59.589 | 146 | 59 | 0 | 245 | 390 | 69 | 214 | 2.63e-59 | 192 |
| Msa0045240 | AT5G23370.1 | 47.423 | 194 | 96 | 3 | 19 | 210 | 12 | 201 | 9.63e-56 | 183 |
| Msa0045240 | AT5G08350.1 | 51.031 | 194 | 83 | 3 | 209 | 395 | 30 | 218 | 5.26e-59 | 192 |
| Msa0045240 | AT5G08350.1 | 48.901 | 182 | 88 | 3 | 30 | 210 | 23 | 200 | 2.95e-53 | 177 |
| Msa0045240 | AT5G23350.1 | 58.219 | 146 | 61 | 0 | 245 | 390 | 69 | 214 | 1.90e-57 | 187 |
| Msa0045240 | AT5G23350.1 | 50.588 | 170 | 77 | 2 | 58 | 224 | 53 | 218 | 7.98e-54 | 178 |
| Msa0045240 | AT5G23360.1 | 55.102 | 147 | 66 | 0 | 245 | 391 | 61 | 207 | 3.79e-55 | 181 |
| Msa0045240 | AT5G23360.1 | 48.352 | 182 | 82 | 4 | 30 | 210 | 23 | 193 | 3.79e-51 | 171 |
| Msa0045240 | AT5G13200.1 | 39.456 | 147 | 89 | 0 | 244 | 390 | 115 | 261 | 3.02e-32 | 123 |
| Msa0045240 | AT5G13200.1 | 37.086 | 151 | 91 | 1 | 60 | 210 | 102 | 248 | 5.54e-30 | 117 |
| Msa0045240 | AT4G01600.3 | 36.585 | 164 | 99 | 2 | 227 | 389 | 26 | 185 | 2.20e-30 | 115 |
| Msa0045240 | AT4G01600.3 | 35.758 | 165 | 101 | 2 | 50 | 213 | 16 | 176 | 3.54e-30 | 115 |
| Msa0045240 | AT4G01600.1 | 36.585 | 164 | 99 | 2 | 227 | 389 | 65 | 224 | 4.19e-30 | 116 |
| Msa0045240 | AT4G01600.1 | 35.542 | 166 | 102 | 2 | 50 | 214 | 55 | 216 | 6.85e-30 | 115 |
| Msa0045240 | AT4G01600.2 | 37.415 | 147 | 91 | 1 | 244 | 389 | 73 | 219 | 2.88e-29 | 114 |
| Msa0045240 | AT4G01600.2 | 34.545 | 165 | 98 | 2 | 50 | 213 | 55 | 210 | 2.84e-27 | 108 |
| Msa0045240 | AT2G22475.1 | 35.526 | 152 | 93 | 2 | 59 | 210 | 133 | 279 | 1.92e-28 | 113 |
| Msa0045240 | AT2G22475.1 | 32.450 | 151 | 101 | 1 | 244 | 394 | 147 | 296 | 1.96e-25 | 105 |
| Msa0045240 | AT1G28200.1 | 32.544 | 169 | 110 | 3 | 224 | 389 | 87 | 254 | 1.20e-26 | 107 |
| Msa0045240 | AT1G28200.1 | 33.333 | 150 | 95 | 2 | 60 | 209 | 97 | 241 | 7.42e-26 | 105 |
| Msa0045240 | AT1G28200.2 | 32.544 | 169 | 110 | 3 | 224 | 389 | 87 | 254 | 1.20e-26 | 107 |
| Msa0045240 | AT1G28200.2 | 33.333 | 150 | 95 | 2 | 60 | 209 | 97 | 241 | 7.42e-26 | 105 |
| Msa0045240 | AT5G13200.2 | 35.135 | 111 | 68 | 1 | 60 | 170 | 102 | 208 | 1.37e-16 | 78.6 |
| Msa0045240 | AT5G13200.2 | 38.298 | 94 | 58 | 0 | 244 | 337 | 115 | 208 | 2.90e-16 | 77.8 |
| Msa0045240 | AT2G22475.2 | 31.579 | 114 | 73 | 2 | 59 | 172 | 133 | 241 | 1.88e-12 | 67.4 |
Find 83 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCATGACATAGTTAT+TGG | 0.132924 | 1_1:+77099413 | Msa0045240:CDS |
| TCTAAGTATGTAGTATTTAA+AGG | 0.275399 | 1_1:-77099255 | None:intergenic |
| AAGGGTACTCACCATGTTCT+TGG | 0.303202 | 1_1:-77099696 | None:intergenic |
| AGGGGTACTCACCATGTTCT+TGG | 0.305997 | 1_1:-77103335 | None:intergenic |
| CCCTTCATTGACCTCAAAAT+AGG | 0.349137 | 1_1:-77104362 | None:intergenic |
| ATGAAGGGAGATTATTGTTA+TGG | 0.350767 | 1_1:+77104377 | Msa0045240:three_prime_UTR |
| ACCACATCTGGTCCTCTATC+TGG | 0.375547 | 1_1:+77099972 | Msa0045240:CDS |
| TAGAGGAAGTTATGCTTACT+TGG | 0.381511 | 1_1:-77099298 | None:intergenic |
| AGGGGCTCAAATTCTTCAAA+TGG | 0.390450 | 1_1:+77099866 | Msa0045240:CDS |
| TAAAGAGGACGTTGAGCTTA+GGG | 0.393383 | 1_1:+77103509 | Msa0045240:CDS |
| GTTCAGGACATACCTTATAT+CGG | 0.393911 | 1_1:-77103744 | None:intergenic |
| ACACACTTGATCTTCTTCAA+TGG | 0.403217 | 1_1:-77100182 | None:intergenic |
| AAGATTTGTGTTTGGTTGAA+AGG | 0.405842 | 1_1:-77099361 | None:intergenic |
| TAAAGAGGACATTGAGCTTA+GGG | 0.407061 | 1_1:+77099847 | Msa0045240:CDS |
| CTAAGTATGTAGTATTTAAA+GGG | 0.415500 | 1_1:-77099254 | None:intergenic |
| ATAAAGAGGACGTTGAGCTT+AGG | 0.430032 | 1_1:+77103508 | Msa0045240:CDS |
| AATGCGTAGGATCCGCTATA+AGG | 0.432925 | 1_1:+77100070 | Msa0045240:CDS |
| TGTTATCTCTCCACCACATC+TGG | 0.435363 | 1_1:+77099960 | Msa0045240:CDS |
| AATGCGTAGGATCCGATATA+AGG | 0.437431 | 1_1:+77103732 | Msa0045240:CDS |
| GAAAGGACTATAGAAGTAGA+AGG | 0.439099 | 1_1:-77099344 | None:intergenic |
| CGAAGATATGCTTTGAAATG+AGG | 0.444217 | 1_1:+77104101 | Msa0045240:three_prime_UTR |
| ATGTTATTATGCTCTAATAG+TGG | 0.463690 | 1_1:-77104028 | None:intergenic |
| TGTTATCTCTCCACCACATC+CGG | 0.474249 | 1_1:+77103622 | Msa0045240:CDS |
| CCTCTTCATCTCCAATGAAA+AGG | 0.477437 | 1_1:+77099998 | Msa0045240:CDS |
| CCTCTTCATCTCCAATGAAA+AGG | 0.477437 | 1_1:+77103660 | Msa0045240:CDS |
| ATAAAGAGGACATTGAGCTT+AGG | 0.479333 | 1_1:+77099846 | Msa0045240:CDS |
| TGATATATAAGATTTGTGTT+TGG | 0.481083 | 1_1:-77099369 | None:intergenic |
| ACCACATCCGGTCCTCTAGC+TGG | 0.484625 | 1_1:+77103634 | Msa0045240:CDS |
| CTTTGAAATGAGGGACTTCG+TGG | 0.487322 | 1_1:+77104111 | Msa0045240:three_prime_UTR |
| TATAGAAGTAGAAGGTGAAG+AGG | 0.489350 | 1_1:-77099336 | None:intergenic |
| CTACATACTTAGACTACAAA+GGG | 0.492097 | 1_1:+77099265 | Msa0045240:five_prime_UTR |
| CTTGATCTTCTTCAATGGAA+TGG | 0.496717 | 1_1:-77100177 | None:intergenic |
| GGGGCTCAAATTCTTCAAAT+GGG | 0.501460 | 1_1:+77099867 | Msa0045240:CDS |
| GACTCTTTGTGAGAGACTAT+CGG | 0.507719 | 1_1:-77099674 | None:intergenic |
| CTAACCAGGAAAAGCGCTGC+AGG | 0.509603 | 1_1:+77099647 | Msa0045240:CDS |
| TATTGTTCTCTCACTGCAGA+AGG | 0.510226 | 1_1:-77100024 | None:intergenic |
| TATTGTTCTCTCACTGCAGA+AGG | 0.510226 | 1_1:-77103686 | None:intergenic |
| AAGTAGAAGGTGAAGAGGAA+TGG | 0.513002 | 1_1:-77099331 | None:intergenic |
| TGAATAATACTCTGCCAATA+CGG | 0.521353 | 1_1:-77104318 | None:intergenic |
| CTTGATATTCTTCAGTGGAA+TGG | 0.537049 | 1_1:-77103839 | None:intergenic |
| GAAGATATGCTTTGAAATGA+GGG | 0.540103 | 1_1:+77104102 | Msa0045240:three_prime_UTR |
| TGTTATGGTAGAAAACAAGA+TGG | 0.540307 | 1_1:+77104392 | Msa0045240:three_prime_UTR |
| ATGAAGAGGAGACCAGATAG+AGG | 0.541014 | 1_1:-77099984 | None:intergenic |
| AACTTTCAAATATCTCGAGC+AGG | 0.543455 | 1_1:+77103969 | Msa0045240:CDS |
| ACCAGCTAGAGGACCGGATG+TGG | 0.545746 | 1_1:-77103635 | None:intergenic |
| TTGATATTGACATTGATTAG+TGG | 0.546039 | 1_1:-77099504 | None:intergenic |
| GGGGCTCAAATTCTTCAAGT+AGG | 0.547691 | 1_1:+77103529 | Msa0045240:CDS |
| GAGGAGACCAGCTAGAGGAC+CGG | 0.553573 | 1_1:-77103641 | None:intergenic |
| TTAGTGTGAGAGAAGGAGAG+AGG | 0.554677 | 1_1:+77103581 | Msa0045240:CDS |
| AGCTAGAGGACCGGATGTGG+TGG | 0.559552 | 1_1:-77103632 | None:intergenic |
| ACATATCTAAAACAATAAAG+AGG | 0.563370 | 1_1:+77099832 | Msa0045240:CDS |
| ACATATCTAAAACAATAAAG+AGG | 0.563370 | 1_1:+77103494 | Msa0045240:CDS |
| ACTACATACTTAGACTACAA+AGG | 0.565243 | 1_1:+77099264 | Msa0045240:five_prime_UTR |
| ATGGTTCATTCATATAGTAT+CGG | 0.565704 | 1_1:+77104187 | Msa0045240:intron |
| ATAAAAGTCTTCAATCAGAA+AGG | 0.566655 | 1_1:+77100044 | Msa0045240:CDS |
| ATAAAAGTCTTCAATCAGAA+AGG | 0.566655 | 1_1:+77103706 | Msa0045240:CDS |
| TGTTAATATAGAGACCGTAT+TGG | 0.573700 | 1_1:+77104304 | Msa0045240:three_prime_UTR |
| AGGTAGAGCAAATTCTAACC+AGG | 0.586749 | 1_1:+77099633 | Msa0045240:intron |
| ATATTAACAGTCACTGCTTG+CGG | 0.587455 | 1_1:-77104290 | None:intergenic |
| TTAGTGTGACAGAAGGGGAA+AGG | 0.588982 | 1_1:+77099919 | Msa0045240:CDS |
| AATTCTTCAAATGGGTGGAG+TGG | 0.590708 | 1_1:+77099875 | Msa0045240:CDS |
| CCAGGAAAAGCGCTGCAGGA+AGG | 0.598245 | 1_1:+77099651 | Msa0045240:CDS |
| GCTCAAATTCTTCAAGTAGG+TGG | 0.599531 | 1_1:+77103532 | Msa0045240:CDS |
| ATATGATCAAATTCAACAGT+CGG | 0.601025 | 1_1:+77099457 | Msa0045240:CDS |
| ATCAGAAAGGTCAAATGCGT+AGG | 0.606952 | 1_1:+77100057 | Msa0045240:CDS |
| ATCAGAAAGGTCAAATGCGT+AGG | 0.606952 | 1_1:+77103719 | Msa0045240:CDS |
| AATTCTTCAAGTAGGTGGAG+TGG | 0.608118 | 1_1:+77103537 | Msa0045240:CDS |
| GCTCAAATTCTTCAAATGGG+TGG | 0.612320 | 1_1:+77099870 | Msa0045240:CDS |
| TGTTGATGAAAGAGATCACT+CGG | 0.612401 | 1_1:+77104246 | Msa0045240:three_prime_UTR |
| AGATAGAGGACCAGATGTGG+TGG | 0.622202 | 1_1:-77099970 | None:intergenic |
| ACACACTTGATATTCTTCAG+TGG | 0.629365 | 1_1:-77103844 | None:intergenic |
| ACCAGATAGAGGACCAGATG+TGG | 0.629958 | 1_1:-77099973 | None:intergenic |
| ATATGTTGCTGAGATGATTG+TGG | 0.633252 | 1_1:-77099438 | None:intergenic |
| AAAGAGGACGTTGAGCTTAG+GGG | 0.634036 | 1_1:+77103510 | Msa0045240:CDS |
| TCACAAAGAGTCCAAGAACA+TGG | 0.635074 | 1_1:+77099685 | Msa0045240:CDS |
| TGAAGAAGATCAAGTGTGTG+AGG | 0.640170 | 1_1:+77100186 | Msa0045240:CDS |
| AATTCCAACCAGCAAAAGCG+CGG | 0.640219 | 1_1:+77103282 | Msa0045240:CDS |
| ATGAAGAGGAGACCAGCTAG+AGG | 0.648963 | 1_1:-77103646 | None:intergenic |
| ACACAAAGAGTCCAAGAACA+TGG | 0.649976 | 1_1:+77103324 | Msa0045240:CDS |
| AAAGAGGACATTGAGCTTAG+GGG | 0.650107 | 1_1:+77099848 | Msa0045240:CDS |
| GTTCACGACTTACCTTATAG+CGG | 0.664347 | 1_1:-77100082 | None:intergenic |
| CATTCATCGACAGAGAAGAG+AGG | 0.697110 | 1_1:+77104339 | Msa0045240:three_prime_UTR |
| GAGTGGAGAAAGTGTTTACG+CGG | 0.709385 | 1_1:+77103554 | Msa0045240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTTAATTAATTAATAA+TGG | + | chr1_1:77101190-77101209 | Msa0045240:intron | 0.0% |
| !!! | TGAAAGTTTTTTTATATTTT+AGG | - | chr1_1:77103957-77103976 | None:intergenic | 10.0% |
| !!! | TGAATTTTAAATTCAATGAA+GGG | + | chr1_1:77100670-77100689 | Msa0045240:intron | 15.0% |
| !! | TAATTGACACAATTATTTAA+AGG | - | chr1_1:77100879-77100898 | None:intergenic | 15.0% |
| !!! | TGACTATCAAAATTTAAAAT+TGG | - | chr1_1:77101144-77101163 | None:intergenic | 15.0% |
| !! | TTACTAATTATTCACTTTAT+AGG | - | chr1_1:77102138-77102157 | None:intergenic | 15.0% |
| !!! | TTCATCATTTACTTTATTTT+TGG | + | chr1_1:77102522-77102541 | Msa0045240:intron | 15.0% |
| !!! | AAGATAATATTTTGACATAA+TGG | - | chr1_1:77102772-77102791 | None:intergenic | 15.0% |
| !! | CTAAGTATGTAGTATTTAAA+GGG | - | chr1_1:77099257-77099276 | None:intergenic | 20.0% |
| !! | TCTAAGTATGTAGTATTTAA+AGG | - | chr1_1:77099258-77099277 | None:intergenic | 20.0% |
| !! | TGATATATAAGATTTGTGTT+TGG | - | chr1_1:77099372-77099391 | None:intergenic | 20.0% |
| !! | TTAAATTAGATTCTTGTAAC+AGG | - | chr1_1:77099564-77099583 | None:intergenic | 20.0% |
| !!! | TTAATCTAATCAAGTATTGA+TGG | + | chr1_1:77099580-77099599 | Msa0045240:intron | 20.0% |
| !! | AATTAGATACAAAAGGAAAA+TGG | - | chr1_1:77099769-77099788 | None:intergenic | 20.0% |
| !! | TAAAGAGAATTAGATACAAA+AGG | - | chr1_1:77099776-77099795 | None:intergenic | 20.0% |
| !!! | ACATATCTAAAACAATAAAG+AGG | + | chr1_1:77099832-77099851 | Msa0045240:CDS | 20.0% |
| !! | ACATAACAAATATTGGATTA+GGG | - | chr1_1:77100149-77100168 | None:intergenic | 20.0% |
| !! | TACATAACAAATATTGGATT+AGG | - | chr1_1:77100150-77100169 | None:intergenic | 20.0% |
| !!! | CTTCATTGAATTTAAAATTC+AGG | - | chr1_1:77100671-77100690 | None:intergenic | 20.0% |
| !!! | CTGAATTTTAAATTCAATGA+AGG | + | chr1_1:77100669-77100688 | Msa0045240:intron | 20.0% |
| !! | ATTATTGTTATGGTTGAAAA+AGG | + | chr1_1:77100695-77100714 | Msa0045240:intron | 20.0% |
| !! | TCTATATGTTATGTATAAGT+AGG | - | chr1_1:77101519-77101538 | None:intergenic | 20.0% |
| !! | AAGAAAAACTGAAAAAGTAA+AGG | + | chr1_1:77101559-77101578 | Msa0045240:intron | 20.0% |
| !!! | CTTTGTTAGTTACTTTAATT+TGG | + | chr1_1:77101798-77101817 | Msa0045240:intron | 20.0% |
| !! | TAGTAAAGTGAGAAAATTAA+AGG | + | chr1_1:77102152-77102171 | Msa0045240:intron | 20.0% |
| !! | TAAAATTGAAATCCTAGAAT+AGG | - | chr1_1:77102685-77102704 | None:intergenic | 20.0% |
| !! | TATTTAAAAGGATGAAAAGT+AGG | - | chr1_1:77102891-77102910 | None:intergenic | 20.0% |
| !!! | CTAATTTCATTAAGTATTGA+TGG | + | chr1_1:77103220-77103239 | Msa0045240:intron | 20.0% |
| !! | CATAAATTGTACCATATTAT+TGG | - | chr1_1:77103380-77103399 | None:intergenic | 20.0% |
| !!! | ACATATCTAAAACAATAAAG+AGG | + | chr1_1:77099832-77099851 | Msa0045240:CDS | 20.0% |
| !!! | TATATGTACTTATTTAGTTC+AGG | - | chr1_1:77103763-77103782 | None:intergenic | 20.0% |
| !! | ACATAACAAATATTGGATTA+GGG | - | chr1_1:77100149-77100168 | None:intergenic | 20.0% |
| ! | ATATGATCAAATTCAACAGT+CGG | + | chr1_1:77099457-77099476 | Msa0045240:CDS | 25.0% |
| !! | TTGATATTGACATTGATTAG+TGG | - | chr1_1:77099507-77099526 | None:intergenic | 25.0% |
| !! | ATAAAGTTATACTTTTGCAC+TGG | - | chr1_1:77099538-77099557 | None:intergenic | 25.0% |
| ! | ATAAAAGTCTTCAATCAGAA+AGG | + | chr1_1:77100044-77100063 | Msa0045240:CDS | 25.0% |
| !!! | ATCCAATATTTGTTATGTAC+AGG | + | chr1_1:77100151-77100170 | Msa0045240:intron | 25.0% |
| ! | AACCTGTACATAACAAATAT+TGG | - | chr1_1:77100156-77100175 | None:intergenic | 25.0% |
| !! | ATGTTTATGTACTTTTGTGT+TGG | - | chr1_1:77100233-77100252 | None:intergenic | 25.0% |
| !! | TGAAAGTTTTCTGATACTTT+AGG | - | chr1_1:77100295-77100314 | None:intergenic | 25.0% |
| ! | TTCTTTATGTTATGCTCTAA+GGG | - | chr1_1:77100372-77100391 | None:intergenic | 25.0% |
| ! | ATTCTTTATGTTATGCTCTA+AGG | - | chr1_1:77100373-77100392 | None:intergenic | 25.0% |
| !! | CAACATATTGTTGATAAAGT+TGG | + | chr1_1:77100544-77100563 | Msa0045240:intron | 25.0% |
| ! | GCTTATTTAAACTAACTGAT+TGG | - | chr1_1:77100857-77100876 | None:intergenic | 25.0% |
| !!! | TGTGTCAATTATTTCTTTTG+TGG | + | chr1_1:77100888-77100907 | Msa0045240:intron | 25.0% |
| ! | TAAAAAAGTAAGAATCCTTC+AGG | - | chr1_1:77100974-77100993 | None:intergenic | 25.0% |
| !!! | AAGGATTCTTACTTTTTTAG+TGG | + | chr1_1:77100975-77100994 | Msa0045240:intron | 25.0% |
| ! | ATTTCATCAAGAGAGTTATA+TGG | + | chr1_1:77101289-77101308 | Msa0045240:intron | 25.0% |
| ! | CAAGGTAAGAAAAAGTAAAT+AGG | + | chr1_1:77101466-77101485 | Msa0045240:intron | 25.0% |
| ! | TATAAGTAGGATGTAGTATA+TGG | - | chr1_1:77101506-77101525 | None:intergenic | 25.0% |
| ! | AAAACTGAAAAAGTAAAGGA+AGG | + | chr1_1:77101563-77101582 | Msa0045240:intron | 25.0% |
| ! | TTTGTTCTACTACTATATAC+CGG | - | chr1_1:77101654-77101673 | None:intergenic | 25.0% |
| ! | TAGTAGAACAAAATCAAAAG+TGG | + | chr1_1:77101662-77101681 | Msa0045240:intron | 25.0% |
| ! | AAATCAAAAGTGGTAGTTAA+TGG | + | chr1_1:77101672-77101691 | Msa0045240:intron | 25.0% |
| !!! | AACCATGATTTGTTTATCAA+CGG | + | chr1_1:77102188-77102207 | Msa0045240:intron | 25.0% |
| ! | AGCATTTCAATCATATATCT+TGG | + | chr1_1:77102359-77102378 | Msa0045240:intron | 25.0% |
| ! | AGATAGTAAAAATGAAGGTA+GGG | + | chr1_1:77102382-77102401 | Msa0045240:intron | 25.0% |
| ! | AGAATTCTCTAAATTCTCTT+GGG | - | chr1_1:77102440-77102459 | None:intergenic | 25.0% |
| ! | TAGAATTCTCTAAATTCTCT+TGG | - | chr1_1:77102441-77102460 | None:intergenic | 25.0% |
| !!! | TAGAATAGGTTTGTTTTTAG+AGG | - | chr1_1:77102671-77102690 | None:intergenic | 25.0% |
| ! | TCTAAAAACAAACCTATTCT+AGG | + | chr1_1:77102670-77102689 | Msa0045240:intron | 25.0% |
| ! | AGCATGTTGAATGATTAATA+AGG | - | chr1_1:77103026-77103045 | None:intergenic | 25.0% |
| !! | ATGTTCATGATTCTTTTAAC+AGG | - | chr1_1:77103195-77103214 | None:intergenic | 25.0% |
| ! | ATATAGATACCACATACAAA+AGG | - | chr1_1:77103414-77103433 | None:intergenic | 25.0% |
| ! | ATAAAAGTCTTCAATCAGAA+AGG | + | chr1_1:77100044-77100063 | Msa0045240:CDS | 25.0% |
| ! | CACATAACAAATATTGGATT+AGG | - | chr1_1:77103812-77103831 | None:intergenic | 25.0% |
| !! | ATGTTTATGTACTTTTGTGT+TGG | - | chr1_1:77100233-77100252 | None:intergenic | 25.0% |
| ! | ATGTTATTATGCTCTAATAG+TGG | - | chr1_1:77104031-77104050 | None:intergenic | 25.0% |
| ! | ATGGTTCATTCATATAGTAT+CGG | + | chr1_1:77104187-77104206 | Msa0045240:intron | 25.0% |
| ACTACATACTTAGACTACAA+AGG | + | chr1_1:77099264-77099283 | Msa0045240:five_prime_UTR | 30.0% | |
| CTACATACTTAGACTACAAA+GGG | + | chr1_1:77099265-77099284 | Msa0045240:five_prime_UTR | 30.0% | |
| AAGATTTGTGTTTGGTTGAA+AGG | - | chr1_1:77099364-77099383 | None:intergenic | 30.0% | |
| CTTCTTCATGACATAGTTAT+TGG | + | chr1_1:77099413-77099432 | Msa0045240:CDS | 30.0% | |
| ATAATGTGCTTCAATGTTTC+AGG | + | chr1_1:77099613-77099632 | Msa0045240:intron | 30.0% | |
| GTGAAAAATTTCAGTGAGAT+CGG | + | chr1_1:77099803-77099822 | Msa0045240:intron | 30.0% | |
| TGAAAAATTTCAGTGAGATC+GGG | + | chr1_1:77099804-77099823 | Msa0045240:intron | 30.0% | |
| !!! | AGTATTTTAGTGTGACAGAA+GGG | + | chr1_1:77099913-77099932 | Msa0045240:CDS | 30.0% |
| !!! | AATTTTGACTTCTGGCTTAT+GGG | + | chr1_1:77100266-77100285 | Msa0045240:CDS | 30.0% |
| AACTTTCAAATATATCGAGC+AGG | + | chr1_1:77100307-77100326 | Msa0045240:intron | 30.0% | |
| ! | AAAACACCTCATCTTAGTTT+TGG | + | chr1_1:77100485-77100504 | Msa0045240:intron | 30.0% |
| ATGAAGGGAGATTATTGTTA+TGG | + | chr1_1:77100685-77100704 | Msa0045240:intron | 30.0% | |
| TTGTTATGGTTGAAAAAGGA+TGG | + | chr1_1:77100699-77100718 | Msa0045240:intron | 30.0% | |
| GTTTCTTAATGCAAAAGAAC+TGG | - | chr1_1:77100952-77100971 | None:intergenic | 30.0% | |
| ! | TTTTGCATTAAGAAACCTGA+AGG | + | chr1_1:77100956-77100975 | Msa0045240:intron | 30.0% |
| AAAGATTAGCATAAGTTAGC+AGG | - | chr1_1:77101352-77101371 | None:intergenic | 30.0% | |
| !!! | TTTCTGAGATTTTTCAATCC+CGG | + | chr1_1:77101632-77101651 | Msa0045240:intron | 30.0% |
| TTGTTCTACTACTATATACC+GGG | - | chr1_1:77101653-77101672 | None:intergenic | 30.0% | |
| AAATTAAGAGATTGAGCACA+TGG | + | chr1_1:77101870-77101889 | Msa0045240:intron | 30.0% | |
| TTTATCTTATGAGTGAGGAT+AGG | - | chr1_1:77102051-77102070 | None:intergenic | 30.0% | |
| ATCCTCACTCATAAGATAAA+TGG | + | chr1_1:77102051-77102070 | Msa0045240:intron | 30.0% | |
| ATCCATTTATCTTATGAGTG+AGG | - | chr1_1:77102056-77102075 | None:intergenic | 30.0% | |
| !!! | TAAGCTGAAGTTTTGTTAAC+TGG | - | chr1_1:77102079-77102098 | None:intergenic | 30.0% |
| CCTAGAGTATGAATGATATT+TGG | - | chr1_1:77102107-77102126 | None:intergenic | 30.0% | |
| CCAAATATCATTCATACTCT+AGG | + | chr1_1:77102104-77102123 | Msa0045240:intron | 30.0% | |
| ! | AACCGTTGATAAACAAATCA+TGG | - | chr1_1:77102193-77102212 | None:intergenic | 30.0% |
| CTTGGAGATAGTAAAAATGA+AGG | + | chr1_1:77102377-77102396 | Msa0045240:intron | 30.0% | |
| GAGATAGTAAAAATGAAGGT+AGG | + | chr1_1:77102381-77102400 | Msa0045240:intron | 30.0% | |
| GAATTCTCTAAATTCTCTTG+GGG | - | chr1_1:77102439-77102458 | None:intergenic | 30.0% | |
| TTTGGAAAGTAGGCATTATT+AGG | - | chr1_1:77102556-77102575 | None:intergenic | 30.0% | |
| ATAATGCCTACTTTCCAAAA+TGG | + | chr1_1:77102557-77102576 | Msa0045240:intron | 30.0% | |
| CTTTCAGAAAAAGATGGTAA+AGG | - | chr1_1:77102737-77102756 | None:intergenic | 30.0% | |
| !!! | TTTTGACATAATGGACTGTT+TGG | - | chr1_1:77102763-77102782 | None:intergenic | 30.0% |
| TATTACATCAACCAAGATCA+TGG | + | chr1_1:77102831-77102850 | Msa0045240:intron | 30.0% | |
| CTAAGGAGGTAGTATTTAAA+AGG | - | chr1_1:77102903-77102922 | None:intergenic | 30.0% | |
| TGAAACTGATGATACATGAT+TGG | - | chr1_1:77103083-77103102 | None:intergenic | 30.0% | |
| TGGATATTGAATTTGACAAG+AGG | - | chr1_1:77103138-77103157 | None:intergenic | 30.0% | |
| ! | ACAAAGTTTTACCATTGCTT+TGG | - | chr1_1:77103169-77103188 | None:intergenic | 30.0% |
| ! | TAGATGGGTTTCCAATAATA+TGG | + | chr1_1:77103366-77103385 | Msa0045240:intron | 30.0% |
| ! | AACCATTTTCCTTTTGTATG+TGG | + | chr1_1:77103402-77103421 | Msa0045240:intron | 30.0% |
| TACCACATACAAAAGGAAAA+TGG | - | chr1_1:77103407-77103426 | None:intergenic | 30.0% | |
| TGAAAAATTTCAGTGAGACT+CGG | + | chr1_1:77103466-77103485 | Msa0045240:intron | 30.0% | |
| !! | ATCCAATATTTGTTATGTGC+AGG | + | chr1_1:77103813-77103832 | Msa0045240:intron | 30.0% |
| !!! | GATTTTGATTTCTGGCTTAT+GGG | + | chr1_1:77103928-77103947 | Msa0045240:CDS | 30.0% |
| !! | GAAGATATGCTTTGAAATGA+GGG | + | chr1_1:77104102-77104121 | Msa0045240:three_prime_UTR | 30.0% |
| ! | TGTGCATCTATTTTCATCTT+GGG | - | chr1_1:77104168-77104187 | None:intergenic | 30.0% |
| ! | ATGTGCATCTATTTTCATCT+TGG | - | chr1_1:77104169-77104188 | None:intergenic | 30.0% |
| AAGATGAAAATAGATGCACA+TGG | + | chr1_1:77104168-77104187 | Msa0045240:intron | 30.0% | |
| TGTTAATATAGAGACCGTAT+TGG | + | chr1_1:77104304-77104323 | Msa0045240:three_prime_UTR | 30.0% | |
| TGAATAATACTCTGCCAATA+CGG | - | chr1_1:77104321-77104340 | None:intergenic | 30.0% | |
| ATGAAGGGAGATTATTGTTA+TGG | + | chr1_1:77100685-77100704 | Msa0045240:intron | 30.0% | |
| TGTTATGGTAGAAAACAAGA+TGG | + | chr1_1:77104392-77104411 | Msa0045240:three_prime_UTR | 30.0% | |
| TAGAGGAAGTTATGCTTACT+TGG | - | chr1_1:77099301-77099320 | None:intergenic | 35.0% | |
| TATAGAAGTAGAAGGTGAAG+AGG | - | chr1_1:77099339-77099358 | None:intergenic | 35.0% | |
| GAAAGGACTATAGAAGTAGA+AGG | - | chr1_1:77099347-77099366 | None:intergenic | 35.0% | |
| ATATGTTGCTGAGATGATTG+TGG | - | chr1_1:77099441-77099460 | None:intergenic | 35.0% | |
| !! | TATACTTTTGCACTGGTGTT+TGG | - | chr1_1:77099531-77099550 | None:intergenic | 35.0% |
| ATAAAGAGGACATTGAGCTT+AGG | + | chr1_1:77099846-77099865 | Msa0045240:CDS | 35.0% | |
| TAAAGAGGACATTGAGCTTA+GGG | + | chr1_1:77099847-77099866 | Msa0045240:CDS | 35.0% | |
| !!! | CAGTATTTTAGTGTGACAGA+AGG | + | chr1_1:77099912-77099931 | Msa0045240:CDS | 35.0% |
| !!! | GTATTTTAGTGTGACAGAAG+GGG | + | chr1_1:77099914-77099933 | Msa0045240:CDS | 35.0% |
| CTTGATCTTCTTCAATGGAA+TGG | - | chr1_1:77100180-77100199 | None:intergenic | 35.0% | |
| ACACACTTGATCTTCTTCAA+TGG | - | chr1_1:77100185-77100204 | None:intergenic | 35.0% | |
| !!! | CAATTTTGACTTCTGGCTTA+TGG | + | chr1_1:77100265-77100284 | Msa0045240:CDS | 35.0% |
| !! | TTTATGTTATGCTCTAAGGG+TGG | - | chr1_1:77100369-77100388 | None:intergenic | 35.0% |
| !! | TGAAGATATGCTTTGAAACG+AGG | + | chr1_1:77100450-77100469 | Msa0045240:intron | 35.0% |
| !! | GAAGATATGCTTTGAAACGA+GGG | + | chr1_1:77100451-77100470 | Msa0045240:intron | 35.0% |
| ATGAAGCCAAAACTAAGATG+AGG | - | chr1_1:77100494-77100513 | None:intergenic | 35.0% | |
| TGGCTTCATTGATATTAGCT+CGG | + | chr1_1:77100505-77100524 | Msa0045240:intron | 35.0% | |
| TATTAGCTCGGATGTAAACT+TGG | + | chr1_1:77100517-77100536 | Msa0045240:intron | 35.0% | |
| ! | TGGTAATGCAAGAGATCATT+TGG | + | chr1_1:77100564-77100583 | Msa0045240:intron | 35.0% |
| TATGGTTGAAAAAGGATGGA+AGG | + | chr1_1:77100703-77100722 | Msa0045240:intron | 35.0% | |
| !! | TTTTCTTGTAGGGGTTGATT+TGG | - | chr1_1:77101062-77101081 | None:intergenic | 35.0% |
| ! | TTGCACCATGTTTTCTTGTA+GGG | - | chr1_1:77101072-77101091 | None:intergenic | 35.0% |
| ! | CTGTTTTGTAACCTAGTACA+AGG | - | chr1_1:77101107-77101126 | None:intergenic | 35.0% |
| CTTGTACTAGGTTACAAAAC+AGG | + | chr1_1:77101105-77101124 | Msa0045240:intron | 35.0% | |
| CTGAAAAGTGAATTGTGTTG+TGG | + | chr1_1:77101324-77101343 | Msa0045240:intron | 35.0% | |
| !! | ATCATCAAAGCATTTTGAGC+TGG | + | chr1_1:77101404-77101423 | Msa0045240:intron | 35.0% |
| ATCGCAAGGCAATTTAATGA+AGG | - | chr1_1:77101445-77101464 | None:intergenic | 35.0% | |
| TTAAATTGCCTTGCGATACA+AGG | + | chr1_1:77101448-77101467 | Msa0045240:intron | 35.0% | |
| ! | TTTTCTTACCTTGTATCGCA+AGG | - | chr1_1:77101459-77101478 | None:intergenic | 35.0% |
| AAAGTAAAGGAAGGTGAATG+AGG | + | chr1_1:77101572-77101591 | Msa0045240:intron | 35.0% | |
| GTCAAGTTTGTGAAAGTTCA+AGG | + | chr1_1:77101597-77101616 | Msa0045240:intron | 35.0% | |
| GTGGTAGTTAATGGTTCAAA+AGG | + | chr1_1:77101681-77101700 | Msa0045240:intron | 35.0% | |
| TTCAAAAGGCAGAGTATAGT+AGG | + | chr1_1:77101695-77101714 | Msa0045240:intron | 35.0% | |
| ! | GAATAATAACTGACTCTGTC+TGG | + | chr1_1:77101820-77101839 | Msa0045240:intron | 35.0% |
| ! | AGCACATGGTTCTGTATAAA+AGG | + | chr1_1:77101884-77101903 | Msa0045240:intron | 35.0% |
| ! | GCACATGGTTCTGTATAAAA+GGG | + | chr1_1:77101885-77101904 | Msa0045240:intron | 35.0% |
| ATATCCATGTGCATCCAATA+TGG | + | chr1_1:77101920-77101939 | Msa0045240:intron | 35.0% | |
| !! | ACAAATGGGTTACATTCACT+TGG | + | chr1_1:77101977-77101996 | Msa0045240:intron | 35.0% |
| GGATAGGATTACTCAATTGA+GGG | - | chr1_1:77102035-77102054 | None:intergenic | 35.0% | |
| AGGATAGGATTACTCAATTG+AGG | - | chr1_1:77102036-77102055 | None:intergenic | 35.0% | |
| ATCAGCATTGCTTTATGAGT+CGG | - | chr1_1:77102484-77102503 | None:intergenic | 35.0% | |
| !! | AATGCACCATTTTGGAAAGT+AGG | - | chr1_1:77102566-77102585 | None:intergenic | 35.0% |
| ! | TTTGGAGAAATGCACCATTT+TGG | - | chr1_1:77102574-77102593 | None:intergenic | 35.0% |
| AAAATGGTGCATTTCTCCAA+AGG | + | chr1_1:77102573-77102592 | Msa0045240:intron | 35.0% | |
| AAATGGTGCATTTCTCCAAA+GGG | + | chr1_1:77102574-77102593 | Msa0045240:intron | 35.0% | |
| ACAAGATTCCGTAGTGTATA+GGG | - | chr1_1:77102615-77102634 | None:intergenic | 35.0% | |
| AACAAGATTCCGTAGTGTAT+AGG | - | chr1_1:77102616-77102635 | None:intergenic | 35.0% | |
| !! | GTTTTTAGAGGCTTAGAGAA+AGG | - | chr1_1:77102659-77102678 | None:intergenic | 35.0% |
| ! | TGGTTGCTTTCAGAAAAAGA+TGG | - | chr1_1:77102743-77102762 | None:intergenic | 35.0% |
| TAATAAAGACACTACCCACA+TGG | - | chr1_1:77102816-77102835 | None:intergenic | 35.0% | |
| ! | ATCAGTCCTTTTGTGTTCTA+AGG | - | chr1_1:77102920-77102939 | None:intergenic | 35.0% |
| TAGAGGAAGTTATGTTTGCT+TGG | - | chr1_1:77102947-77102966 | None:intergenic | 35.0% | |
| TTGTTGAAAAGACTAGCACT+AGG | - | chr1_1:77102995-77103014 | None:intergenic | 35.0% | |
| AACTAGCTCATGATGAATTG+AGG | - | chr1_1:77103051-77103070 | None:intergenic | 35.0% | |
| ATTCATCATGAGCTAGTTGT+TGG | + | chr1_1:77103053-77103072 | Msa0045240:intron | 35.0% | |
| !! | TTTACCATTGCTTTGGTGTT+TGG | - | chr1_1:77103162-77103181 | None:intergenic | 35.0% |
| AAACCCATCTAAGTCTTACA+GGG | - | chr1_1:77103357-77103376 | None:intergenic | 35.0% | |
| GTTCAGGACATACCTTATAT+CGG | - | chr1_1:77103747-77103766 | None:intergenic | 35.0% | |
| CACCTGCACATAACAAATAT+TGG | - | chr1_1:77103818-77103837 | None:intergenic | 35.0% | |
| !! | CAATATTTGTTATGTGCAGG+TGG | + | chr1_1:77103816-77103835 | Msa0045240:intron | 35.0% |
| CTTGATATTCTTCAGTGGAA+TGG | - | chr1_1:77103842-77103861 | None:intergenic | 35.0% | |
| ACACACTTGATATTCTTCAG+TGG | - | chr1_1:77103847-77103866 | None:intergenic | 35.0% | |
| !!! | CAGAAGACGATTTTGATTTC+TGG | + | chr1_1:77103920-77103939 | Msa0045240:CDS | 35.0% |
| !!! | CGATTTTGATTTCTGGCTTA+TGG | + | chr1_1:77103927-77103946 | Msa0045240:CDS | 35.0% |
| AACTTTCAAATATCTCGAGC+AGG | + | chr1_1:77103969-77103988 | Msa0045240:CDS | 35.0% | |
| !! | CGAAGATATGCTTTGAAATG+AGG | + | chr1_1:77104101-77104120 | Msa0045240:three_prime_UTR | 35.0% |
| ! | TGTTGATGAAAGAGATCACT+CGG | + | chr1_1:77104246-77104265 | Msa0045240:three_prime_UTR | 35.0% |
| ATATTAACAGTCACTGCTTG+CGG | - | chr1_1:77104293-77104312 | None:intergenic | 35.0% | |
| !!! | CCTATTTTGAGGTCAATGAA+GGG | + | chr1_1:77104362-77104381 | Msa0045240:three_prime_UTR | 35.0% |
| !!! | GGAATGGTTTTAGCTCTTAG+AGG | - | chr1_1:77099318-77099337 | None:intergenic | 40.0% |
| AAGTAGAAGGTGAAGAGGAA+TGG | - | chr1_1:77099334-77099353 | None:intergenic | 40.0% | |
| AGGTAGAGCAAATTCTAACC+AGG | + | chr1_1:77099633-77099652 | Msa0045240:intron | 40.0% | |
| GACTCTTTGTGAGAGACTAT+CGG | - | chr1_1:77099677-77099696 | None:intergenic | 40.0% | |
| TCACAAAGAGTCCAAGAACA+TGG | + | chr1_1:77099685-77099704 | Msa0045240:CDS | 40.0% | |
| ! | TACCCTTGTAAGACTTGGTT+GGG | + | chr1_1:77099712-77099731 | Msa0045240:intron | 40.0% |
| AACCCAACCAAGTCTTACAA+GGG | - | chr1_1:77099717-77099736 | None:intergenic | 40.0% | |
| AAACCCAACCAAGTCTTACA+AGG | - | chr1_1:77099718-77099737 | None:intergenic | 40.0% | |
| GGTTGGGTTTCAAAGAGATA+TGG | + | chr1_1:77099728-77099747 | Msa0045240:intron | 40.0% | |
| AAAGAGGACATTGAGCTTAG+GGG | + | chr1_1:77099848-77099867 | Msa0045240:CDS | 40.0% | |
| AGGGGCTCAAATTCTTCAAA+TGG | + | chr1_1:77099866-77099885 | Msa0045240:CDS | 40.0% | |
| GGGGCTCAAATTCTTCAAAT+GGG | + | chr1_1:77099867-77099886 | Msa0045240:CDS | 40.0% | |
| GCTCAAATTCTTCAAATGGG+TGG | + | chr1_1:77099870-77099889 | Msa0045240:CDS | 40.0% | |
| AATTCTTCAAATGGGTGGAG+TGG | + | chr1_1:77099875-77099894 | Msa0045240:CDS | 40.0% | |
| ! | CCTTTTCATTGGAGATGAAG+AGG | - | chr1_1:77100001-77100020 | None:intergenic | 40.0% |
| CCTCTTCATCTCCAATGAAA+AGG | + | chr1_1:77099998-77100017 | Msa0045240:CDS | 40.0% | |
| TATTGTTCTCTCACTGCAGA+AGG | - | chr1_1:77100027-77100046 | None:intergenic | 40.0% | |
| ATCAGAAAGGTCAAATGCGT+AGG | + | chr1_1:77100057-77100076 | Msa0045240:CDS | 40.0% | |
| GTTCACGACTTACCTTATAG+CGG | - | chr1_1:77100085-77100104 | None:intergenic | 40.0% | |
| TGAAGAAGATCAAGTGTGTG+AGG | + | chr1_1:77100186-77100205 | Msa0045240:CDS | 40.0% | |
| !!! | CAGTCGACAATTTTGACTTC+TGG | + | chr1_1:77100258-77100277 | Msa0045240:CDS | 40.0% |
| GTTAATGACAAGGACCATAC+TGG | + | chr1_1:77100616-77100635 | Msa0045240:intron | 40.0% | |
| ATGGATACCTTCTACCAGTA+TGG | - | chr1_1:77100633-77100652 | None:intergenic | 40.0% | |
| ! | AAGGTATCCATCCATCCATA+GGG | + | chr1_1:77100642-77100661 | Msa0045240:intron | 40.0% |
| TTAAAATTCAGGCCTCCCTA+TGG | - | chr1_1:77100660-77100679 | None:intergenic | 40.0% | |
| AATGCAAAAGAACTGGCTGT+AGG | - | chr1_1:77100945-77100964 | None:intergenic | 40.0% | |
| TCAACCCCTACAAGAAAACA+TGG | + | chr1_1:77101064-77101083 | Msa0045240:intron | 40.0% | |
| ! | TGCACCATGTTTTCTTGTAG+GGG | - | chr1_1:77101071-77101090 | None:intergenic | 40.0% |
| ! | CTTGCACCATGTTTTCTTGT+AGG | - | chr1_1:77101073-77101092 | None:intergenic | 40.0% |
| ACATGGTGCAAGTCAATTTC+AGG | + | chr1_1:77101081-77101100 | Msa0045240:intron | 40.0% | |
| ! | TCAATTTCAGGCCTTGTACT+AGG | + | chr1_1:77101093-77101112 | Msa0045240:intron | 40.0% |
| ATATGTAGCACGTTCCCTAT+TGG | - | chr1_1:77101770-77101789 | None:intergenic | 40.0% | |
| GGATGCACATGGATATTATG+TGG | - | chr1_1:77101916-77101935 | None:intergenic | 40.0% | |
| !! | AGAGTGGGTTAGCAACAAAT+GGG | + | chr1_1:77101963-77101982 | Msa0045240:intron | 40.0% |
| CTCTAAATTCTCTTGGGGTA+AGG | - | chr1_1:77102434-77102453 | None:intergenic | 40.0% | |
| AAGAACTTCAACTTGCCATG+TGG | + | chr1_1:77102798-77102817 | Msa0045240:intron | 40.0% | |
| AGAACTTCAACTTGCCATGT+GGG | + | chr1_1:77102799-77102818 | Msa0045240:intron | 40.0% | |
| ! | GTGAATCTTGAGCCTTTTGT+GGG | - | chr1_1:77102866-77102885 | None:intergenic | 40.0% |
| ! | AGTGAATCTTGAGCCTTTTG+TGG | - | chr1_1:77102867-77102886 | None:intergenic | 40.0% |
| CTACCTCCTTAGAACACAAA+AGG | + | chr1_1:77102911-77102930 | Msa0045240:intron | 40.0% | |
| !!! | AGTCCTTTTGTGTTCTAAGG+AGG | - | chr1_1:77102917-77102936 | None:intergenic | 40.0% |
| ACACAAAGAGTCCAAGAACA+TGG | + | chr1_1:77103324-77103343 | Msa0045240:CDS | 40.0% | |
| TACCCCTGTAAGACTTAGAT+GGG | + | chr1_1:77103351-77103370 | Msa0045240:intron | 40.0% | |
| AACCCATCTAAGTCTTACAG+GGG | - | chr1_1:77103356-77103375 | None:intergenic | 40.0% | |
| GAAACCCATCTAAGTCTTAC+AGG | - | chr1_1:77103358-77103377 | None:intergenic | 40.0% | |
| ATAAAGAGGACGTTGAGCTT+AGG | + | chr1_1:77103508-77103527 | Msa0045240:CDS | 40.0% | |
| TAAAGAGGACGTTGAGCTTA+GGG | + | chr1_1:77103509-77103528 | Msa0045240:CDS | 40.0% | |
| GCTCAAATTCTTCAAGTAGG+TGG | + | chr1_1:77103532-77103551 | Msa0045240:CDS | 40.0% | |
| AATTCTTCAAGTAGGTGGAG+TGG | + | chr1_1:77103537-77103556 | Msa0045240:CDS | 40.0% | |
| !!! | CGGTATTTTAGTGTGAGAGA+AGG | + | chr1_1:77103574-77103593 | Msa0045240:CDS | 40.0% |
| ! | CCTTTTCATTGGAGATGAAG+AGG | - | chr1_1:77100001-77100020 | None:intergenic | 40.0% |
| CCTCTTCATCTCCAATGAAA+AGG | + | chr1_1:77099998-77100017 | Msa0045240:CDS | 40.0% | |
| TATTGTTCTCTCACTGCAGA+AGG | - | chr1_1:77100027-77100046 | None:intergenic | 40.0% | |
| ATCAGAAAGGTCAAATGCGT+AGG | + | chr1_1:77100057-77100076 | Msa0045240:CDS | 40.0% | |
| AATGCGTAGGATCCGATATA+AGG | + | chr1_1:77103732-77103751 | Msa0045240:CDS | 40.0% | |
| !!! | GCCTATTTTGAGGTCAATGA+AGG | + | chr1_1:77104361-77104380 | Msa0045240:three_prime_UTR | 40.0% |
| CCCTTCATTGACCTCAAAAT+AGG | - | chr1_1:77104365-77104384 | None:intergenic | 40.0% | |
| !! | AAGGGTACTCACCATGTTCT+TGG | - | chr1_1:77099699-77099718 | None:intergenic | 45.0% |
| GTGAGTACCCTTGTAAGACT+TGG | + | chr1_1:77099707-77099726 | Msa0045240:intron | 45.0% | |
| ! | GTACCCTTGTAAGACTTGGT+TGG | + | chr1_1:77099711-77099730 | Msa0045240:intron | 45.0% |
| TTAGTGTGACAGAAGGGGAA+AGG | + | chr1_1:77099919-77099938 | Msa0045240:CDS | 45.0% | |
| TGTTATCTCTCCACCACATC+TGG | + | chr1_1:77099960-77099979 | Msa0045240:CDS | 45.0% | |
| ATGAAGAGGAGACCAGATAG+AGG | - | chr1_1:77099987-77100006 | None:intergenic | 45.0% | |
| ! | GCAGAAGGCAACCTTTTCAT+TGG | - | chr1_1:77100012-77100031 | None:intergenic | 45.0% |
| AATGCGTAGGATCCGCTATA+AGG | + | chr1_1:77100070-77100089 | Msa0045240:CDS | 45.0% | |
| TCATTAACAGCCACTGCTTG+GGG | - | chr1_1:77100604-77100623 | None:intergenic | 45.0% | |
| GTCATTAACAGCCACTGCTT+GGG | - | chr1_1:77100605-77100624 | None:intergenic | 45.0% | |
| TGTCATTAACAGCCACTGCT+TGG | - | chr1_1:77100606-77100625 | None:intergenic | 45.0% | |
| AGCAGTGGCTGTTAATGACA+AGG | + | chr1_1:77100606-77100625 | Msa0045240:intron | 45.0% | |
| ACAAGGACCATACTGGTAGA+AGG | + | chr1_1:77100623-77100642 | Msa0045240:intron | 45.0% | |
| !! | GAAGGTATCCATCCATCCAT+AGG | + | chr1_1:77100641-77100660 | Msa0045240:intron | 45.0% |
| AAGAACTGGCTGTAGGTGAA+GGG | - | chr1_1:77100938-77100957 | None:intergenic | 45.0% | |
| AAAGAACTGGCTGTAGGTGA+AGG | - | chr1_1:77100939-77100958 | None:intergenic | 45.0% | |
| !! | TCTTGTAGGGGTTGATTTGG+TGG | - | chr1_1:77101059-77101078 | None:intergenic | 45.0% |
| CATTGACACCTGCTTATGCT+TGG | + | chr1_1:77101377-77101396 | Msa0045240:intron | 45.0% | |
| TGATCCATCCAAGCATAAGC+AGG | - | chr1_1:77101388-77101407 | None:intergenic | 45.0% | |
| CCAAACACATGTGACTGATG+CGG | + | chr1_1:77101718-77101737 | Msa0045240:intron | 45.0% | |
| !! | CTGATGCGGTTACTTGCTAT+TGG | + | chr1_1:77101732-77101751 | Msa0045240:intron | 45.0% |
| TGGTGTTCCCTAATGCCAAT+AGG | + | chr1_1:77101752-77101771 | Msa0045240:intron | 45.0% | |
| GGTGTTCCCTAATGCCAATA+GGG | + | chr1_1:77101753-77101772 | Msa0045240:intron | 45.0% | |
| CACGTTCCCTATTGGCATTA+GGG | - | chr1_1:77101762-77101781 | None:intergenic | 45.0% | |
| AGCACCATATTGGATGCACA+TGG | - | chr1_1:77101927-77101946 | None:intergenic | 45.0% | |
| TTGCAGCAGTAGCACCATAT+TGG | - | chr1_1:77101937-77101956 | None:intergenic | 45.0% | |
| !! | GAGAGTGGGTTAGCAACAAA+TGG | + | chr1_1:77101962-77101981 | Msa0045240:intron | 45.0% |
| TGAGGGACTGCATCTTGAAA+TGG | - | chr1_1:77102018-77102037 | None:intergenic | 45.0% | |
| TAGTGTATAGGGCCTGTTGT+CGG | - | chr1_1:77102604-77102623 | None:intergenic | 45.0% | |
| ACAACAGGCCCTATACACTA+CGG | + | chr1_1:77102604-77102623 | Msa0045240:intron | 45.0% | |
| GGATGACTCAACCATGATCT+TGG | - | chr1_1:77102845-77102864 | None:intergenic | 45.0% | |
| TGGTTGAGTCATCCCACAAA+AGG | + | chr1_1:77102851-77102870 | Msa0045240:intron | 45.0% | |
| GACTAGCACTAGGTAAAGAG+AGG | - | chr1_1:77102985-77103004 | None:intergenic | 45.0% | |
| !! | CCATTGCTTTGGTGTTTGGT+TGG | - | chr1_1:77103158-77103177 | None:intergenic | 45.0% |
| CCAACCAAACACCAAAGCAA+TGG | + | chr1_1:77103155-77103174 | Msa0045240:intron | 45.0% | |
| AATTCCAACCAGCAAAAGCG+CGG | + | chr1_1:77103282-77103301 | Msa0045240:CDS | 45.0% | |
| GTACCCCTGTAAGACTTAGA+TGG | + | chr1_1:77103350-77103369 | Msa0045240:intron | 45.0% | |
| AAAGAGGACGTTGAGCTTAG+GGG | + | chr1_1:77103510-77103529 | Msa0045240:CDS | 45.0% | |
| GGGGCTCAAATTCTTCAAGT+AGG | + | chr1_1:77103529-77103548 | Msa0045240:CDS | 45.0% | |
| !! | GAGTGGAGAAAGTGTTTACG+CGG | + | chr1_1:77103554-77103573 | Msa0045240:CDS | 45.0% |
| TTAGTGTGAGAGAAGGAGAG+AGG | + | chr1_1:77103581-77103600 | Msa0045240:CDS | 45.0% | |
| TGTTATCTCTCCACCACATC+CGG | + | chr1_1:77099960-77099979 | Msa0045240:CDS | 45.0% | |
| ! | GCAGAAGGCAACCTTTTCAT+TGG | - | chr1_1:77100012-77100031 | None:intergenic | 45.0% |
| !! | CTTTGAAATGAGGGACTTCG+TGG | + | chr1_1:77104111-77104130 | Msa0045240:three_prime_UTR | 45.0% |
| CATTCATCGACAGAGAAGAG+AGG | + | chr1_1:77104339-77104358 | Msa0045240:three_prime_UTR | 45.0% | |
| ! | GAGAAGAGAGGCCTATTTTG+AGG | + | chr1_1:77104351-77104370 | Msa0045240:three_prime_UTR | 45.0% |
| !!! | AATTTTATTAAATATTTGAA+TGG | - | chr1_1:77100803-77100822 | None:intergenic | 5.0% |
| AGATAGAGGACCAGATGTGG+TGG | - | chr1_1:77099973-77099992 | None:intergenic | 50.0% | |
| ACCACATCTGGTCCTCTATC+TGG | + | chr1_1:77099972-77099991 | Msa0045240:CDS | 50.0% | |
| ACCAGATAGAGGACCAGATG+TGG | - | chr1_1:77099976-77099995 | None:intergenic | 50.0% | |
| !! | GATGAGGTGTTTTGTCCACG+AGG | - | chr1_1:77100478-77100497 | None:intergenic | 50.0% |
| TGCTTTGTAACCCCAAGCAG+TGG | + | chr1_1:77100591-77100610 | Msa0045240:intron | 50.0% | |
| GTATCCATCCATCCATAGGG+AGG | + | chr1_1:77100645-77100664 | Msa0045240:intron | 50.0% | |
| AATTCAGGCCTCCCTATGGA+TGG | - | chr1_1:77100656-77100675 | None:intergenic | 50.0% | |
| GACACCTGCTTATGCTTGGA+TGG | + | chr1_1:77101381-77101400 | Msa0045240:intron | 50.0% | |
| CCGCATCAGTCACATGTGTT+TGG | - | chr1_1:77101721-77101740 | None:intergenic | 50.0% | |
| GCACGTTCCCTATTGGCATT+AGG | - | chr1_1:77101763-77101782 | None:intergenic | 50.0% | |
| ACTGCTGCAACTTGTGAGAG+TGG | + | chr1_1:77101947-77101966 | Msa0045240:intron | 50.0% | |
| CTGCTGCAACTTGTGAGAGT+GGG | + | chr1_1:77101948-77101967 | Msa0045240:intron | 50.0% | |
| GGTGCATTTCTCCAAAGGGT+TGG | + | chr1_1:77102578-77102597 | Msa0045240:intron | 50.0% | |
| ! | GGAATGCTCTGAGCTACTAG+AGG | - | chr1_1:77102964-77102983 | None:intergenic | 50.0% |
| !! | AGGGGTACTCACCATGTTCT+TGG | - | chr1_1:77103338-77103357 | None:intergenic | 50.0% |
| ATGAAGAGGAGACCAGCTAG+AGG | - | chr1_1:77103649-77103668 | None:intergenic | 50.0% | |
| !! | CTAACCAGGAAAAGCGCTGC+AGG | + | chr1_1:77099647-77099666 | Msa0045240:CDS | 55.0% |
| !! | CTTTGAAACGAGGGACCTCG+TGG | + | chr1_1:77100460-77100479 | Msa0045240:intron | 55.0% |
| ! | CCTTCCTGCAGCGCTTTTCC+TGG | - | chr1_1:77099654-77099673 | None:intergenic | 60.0% |
| !! | CCAGGAAAAGCGCTGCAGGA+AGG | + | chr1_1:77099651-77099670 | Msa0045240:CDS | 60.0% |
| CAGGCCTCCCTATGGATGGA+TGG | - | chr1_1:77100652-77100671 | None:intergenic | 60.0% | |
| CCTGTTGTCGGCCAACCCTT+TGG | - | chr1_1:77102592-77102611 | None:intergenic | 60.0% | |
| !! | CCAAAGGGTTGGCCGACAAC+AGG | + | chr1_1:77102589-77102608 | Msa0045240:intron | 60.0% |
| ! | TCTGCCGCGCTTTTGCTGGT+TGG | - | chr1_1:77103289-77103308 | None:intergenic | 60.0% |
| ! | CTGTTCTGCCGCGCTTTTGC+TGG | - | chr1_1:77103293-77103312 | None:intergenic | 60.0% |
| AGCTAGAGGACCGGATGTGG+TGG | - | chr1_1:77103635-77103654 | None:intergenic | 60.0% | |
| ACCACATCCGGTCCTCTAGC+TGG | + | chr1_1:77103634-77103653 | Msa0045240:CDS | 60.0% | |
| ACCAGCTAGAGGACCGGATG+TGG | - | chr1_1:77103638-77103657 | None:intergenic | 60.0% | |
| GAGGAGACCAGCTAGAGGAC+CGG | - | chr1_1:77103644-77103663 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 77099249 | 77104444 | 77099249 | ID=Msa0045240;Name=Msa0045240 |
| chr1_1 | mRNA | 77099249 | 77104444 | 77099249 | ID=Msa0045240-mRNA-1;Parent=Msa0045240;Name=Msa0045240-mRNA-1;_AED=0.22;_eAED=0.22;_QI=152|0.57|0.62|1|0.85|0.75|8|370|404 |
| chr1_1 | exon | 77099249 | 77099545 | 77099249 | ID=Msa0045240-mRNA-1:exon:26331;Parent=Msa0045240-mRNA-1 |
| chr1_1 | exon | 77099635 | 77099718 | 77099635 | ID=Msa0045240-mRNA-1:exon:26332;Parent=Msa0045240-mRNA-1 |
| chr1_1 | exon | 77099817 | 77100091 | 77099817 | ID=Msa0045240-mRNA-1:exon:26333;Parent=Msa0045240-mRNA-1 |
| chr1_1 | exon | 77100173 | 77100297 | 77100173 | ID=Msa0045240-mRNA-1:exon:26334;Parent=Msa0045240-mRNA-1 |
| chr1_1 | exon | 77103257 | 77103357 | 77103257 | ID=Msa0045240-mRNA-1:exon:26335;Parent=Msa0045240-mRNA-1 |
| chr1_1 | exon | 77103479 | 77103753 | 77103479 | ID=Msa0045240-mRNA-1:exon:26336;Parent=Msa0045240-mRNA-1 |
| chr1_1 | exon | 77103835 | 77104158 | 77103835 | ID=Msa0045240-mRNA-1:exon:26337;Parent=Msa0045240-mRNA-1 |
| chr1_1 | exon | 77104189 | 77104444 | 77104189 | ID=Msa0045240-mRNA-1:exon:26338;Parent=Msa0045240-mRNA-1 |
| chr1_1 | five_prime_UTR | 77099249 | 77099400 | 77099249 | ID=Msa0045240-mRNA-1:five_prime_utr;Parent=Msa0045240-mRNA-1 |
| chr1_1 | CDS | 77099401 | 77099545 | 77099401 | ID=Msa0045240-mRNA-1:cds;Parent=Msa0045240-mRNA-1 |
| chr1_1 | CDS | 77099635 | 77099718 | 77099635 | ID=Msa0045240-mRNA-1:cds;Parent=Msa0045240-mRNA-1 |
| chr1_1 | CDS | 77099817 | 77100091 | 77099817 | ID=Msa0045240-mRNA-1:cds;Parent=Msa0045240-mRNA-1 |
| chr1_1 | CDS | 77100173 | 77100297 | 77100173 | ID=Msa0045240-mRNA-1:cds;Parent=Msa0045240-mRNA-1 |
| chr1_1 | CDS | 77103257 | 77103357 | 77103257 | ID=Msa0045240-mRNA-1:cds;Parent=Msa0045240-mRNA-1 |
| chr1_1 | CDS | 77103479 | 77103753 | 77103479 | ID=Msa0045240-mRNA-1:cds;Parent=Msa0045240-mRNA-1 |
| chr1_1 | CDS | 77103835 | 77104044 | 77103835 | ID=Msa0045240-mRNA-1:cds;Parent=Msa0045240-mRNA-1 |
| chr1_1 | three_prime_UTR | 77104045 | 77104158 | 77104045 | ID=Msa0045240-mRNA-1:three_prime_utr;Parent=Msa0045240-mRNA-1 |
| chr1_1 | three_prime_UTR | 77104189 | 77104444 | 77104189 | ID=Msa0045240-mRNA-1:three_prime_utr;Parent=Msa0045240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
