Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441710 | sp|Q9FMW4|GEML8_ARATH | 58.904 | 146 | 60 | 0 | 245 | 390 | 69 | 214 | 1.48e-57 | 190 |
| Msa1441710 | sp|Q9FMW4|GEML8_ARATH | 47.423 | 194 | 96 | 3 | 19 | 210 | 12 | 201 | 9.28e-55 | 183 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441710 | A0A371GW26 | 59.179 | 414 | 116 | 7 | 3 | 392 | 250 | 634 | 2.00e-157 | 467 |
| Msa1441710 | A0A371GW26 | 59.564 | 413 | 114 | 8 | 2 | 390 | 59 | 442 | 2.49e-152 | 454 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045240 | Msa1441710 | 0.851787 | 7.068991e-61 | -8.615850e-47 |
| Msa1416180 | Msa1441710 | 0.872603 | 2.800759e-67 | -8.615850e-47 |
| Msa1441710 | Msa1447540 | 0.810307 | 1.230417e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441710 | MtrunA17_Chr1g0212171 | 90.909 | 209 | 15 | 1 | 1 | 209 | 1 | 205 | 4.03e-134 | 383 |
| Msa1441710 | MtrunA17_Chr1g0212171 | 85.475 | 179 | 22 | 1 | 218 | 396 | 51 | 225 | 3.90e-107 | 315 |
| Msa1441710 | MtrunA17_Chr1g0212181 | 79.426 | 209 | 36 | 2 | 1 | 209 | 1 | 202 | 7.76e-115 | 334 |
| Msa1441710 | MtrunA17_Chr1g0212181 | 85.484 | 186 | 23 | 1 | 219 | 404 | 49 | 230 | 1.37e-111 | 326 |
| Msa1441710 | MtrunA17_Chr1g0212121 | 76.190 | 210 | 43 | 2 | 1 | 210 | 1 | 203 | 1.67e-112 | 328 |
| Msa1441710 | MtrunA17_Chr1g0212121 | 77.714 | 175 | 35 | 1 | 218 | 392 | 48 | 218 | 9.64e-94 | 280 |
| Msa1441710 | MtrunA17_Chr1g0212091 | 53.521 | 213 | 89 | 5 | 1 | 210 | 1 | 206 | 3.56e-69 | 218 |
| Msa1441710 | MtrunA17_Chr1g0212091 | 58.333 | 168 | 66 | 1 | 226 | 393 | 59 | 222 | 6.03e-66 | 209 |
| Msa1441710 | MtrunA17_Chr1g0162171 | 57.754 | 187 | 65 | 2 | 216 | 392 | 41 | 223 | 1.38e-68 | 216 |
| Msa1441710 | MtrunA17_Chr1g0162171 | 51.389 | 216 | 84 | 4 | 5 | 210 | 4 | 208 | 1.41e-66 | 211 |
| Msa1441710 | MtrunA17_Chr8g0388871 | 46.561 | 189 | 95 | 3 | 206 | 392 | 1 | 185 | 1.25e-50 | 168 |
| Msa1441710 | MtrunA17_Chr8g0388871 | 50.993 | 151 | 69 | 2 | 60 | 209 | 23 | 169 | 2.48e-43 | 149 |
| Msa1441710 | MtrunA17_Chr6g0481891 | 50.000 | 158 | 75 | 1 | 236 | 393 | 47 | 200 | 2.10e-47 | 160 |
| Msa1441710 | MtrunA17_Chr6g0481891 | 42.222 | 180 | 95 | 2 | 30 | 209 | 13 | 183 | 1.42e-40 | 142 |
| Msa1441710 | MtrunA17_Chr1g0212111 | 61.261 | 111 | 43 | 0 | 282 | 392 | 47 | 157 | 4.15e-41 | 143 |
| Msa1441710 | MtrunA17_Chr1g0212111 | 62.500 | 96 | 36 | 0 | 115 | 210 | 47 | 142 | 4.72e-35 | 127 |
| Msa1441710 | MtrunA17_Chr1g0212131 | 83.077 | 65 | 11 | 0 | 329 | 393 | 1 | 65 | 1.51e-32 | 117 |
| Msa1441710 | MtrunA17_Chr1g0212131 | 95.833 | 48 | 2 | 0 | 162 | 209 | 1 | 48 | 1.61e-26 | 101 |
| Msa1441710 | MtrunA17_Chr7g0251801 | 37.838 | 148 | 92 | 0 | 244 | 391 | 129 | 276 | 1.51e-30 | 119 |
| Msa1441710 | MtrunA17_Chr7g0251801 | 34.839 | 155 | 97 | 1 | 56 | 210 | 112 | 262 | 3.88e-28 | 112 |
| Msa1441710 | MtrunA17_Chr8g0367701 | 35.897 | 156 | 95 | 2 | 59 | 214 | 109 | 259 | 7.76e-30 | 116 |
| Msa1441710 | MtrunA17_Chr8g0367701 | 35.616 | 146 | 93 | 1 | 244 | 389 | 123 | 267 | 2.33e-28 | 112 |
| Msa1441710 | MtrunA17_Chr3g0133221 | 35.616 | 146 | 93 | 1 | 244 | 389 | 111 | 255 | 1.82e-29 | 115 |
| Msa1441710 | MtrunA17_Chr3g0133221 | 38.346 | 133 | 81 | 1 | 77 | 209 | 111 | 242 | 7.44e-29 | 113 |
| Msa1441710 | MtrunA17_Chr2g0315771 | 32.967 | 182 | 114 | 3 | 214 | 391 | 50 | 227 | 8.26e-23 | 96.3 |
| Msa1441710 | MtrunA17_Chr2g0315771 | 34.437 | 151 | 94 | 2 | 60 | 209 | 66 | 212 | 3.32e-20 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441710 | AT5G23370.1 | 58.904 | 146 | 60 | 0 | 245 | 390 | 69 | 214 | 1.51e-58 | 190 |
| Msa1441710 | AT5G23370.1 | 47.423 | 194 | 96 | 3 | 19 | 210 | 12 | 201 | 9.43e-56 | 183 |
| Msa1441710 | AT5G08350.1 | 50.515 | 194 | 84 | 3 | 209 | 395 | 30 | 218 | 1.97e-58 | 190 |
| Msa1441710 | AT5G08350.1 | 48.901 | 182 | 88 | 3 | 30 | 210 | 23 | 200 | 2.71e-53 | 177 |
| Msa1441710 | AT5G23350.1 | 57.534 | 146 | 62 | 0 | 245 | 390 | 69 | 214 | 1.03e-56 | 186 |
| Msa1441710 | AT5G23350.1 | 50.588 | 170 | 77 | 2 | 58 | 224 | 53 | 218 | 7.41e-54 | 178 |
| Msa1441710 | AT5G23360.1 | 54.422 | 147 | 67 | 0 | 245 | 391 | 61 | 207 | 2.06e-54 | 179 |
| Msa1441710 | AT5G23360.1 | 48.352 | 182 | 82 | 4 | 30 | 210 | 23 | 193 | 3.55e-51 | 171 |
| Msa1441710 | AT5G13200.1 | 40.136 | 147 | 88 | 0 | 244 | 390 | 115 | 261 | 8.45e-33 | 124 |
| Msa1441710 | AT5G13200.1 | 37.086 | 151 | 91 | 1 | 60 | 210 | 102 | 248 | 4.61e-30 | 117 |
| Msa1441710 | AT4G01600.3 | 35.758 | 165 | 101 | 2 | 50 | 213 | 16 | 176 | 3.46e-30 | 115 |
| Msa1441710 | AT4G01600.3 | 35.976 | 164 | 100 | 2 | 227 | 389 | 26 | 185 | 7.90e-30 | 114 |
| Msa1441710 | AT4G01600.1 | 35.542 | 166 | 102 | 2 | 50 | 214 | 55 | 216 | 6.57e-30 | 115 |
| Msa1441710 | AT4G01600.1 | 35.976 | 164 | 100 | 2 | 227 | 389 | 65 | 224 | 1.48e-29 | 115 |
| Msa1441710 | AT4G01600.2 | 36.735 | 147 | 92 | 1 | 244 | 389 | 73 | 219 | 1.17e-28 | 112 |
| Msa1441710 | AT4G01600.2 | 34.545 | 165 | 98 | 2 | 50 | 213 | 55 | 210 | 3.15e-27 | 108 |
| Msa1441710 | AT2G22475.1 | 35.526 | 152 | 93 | 2 | 59 | 210 | 133 | 279 | 1.98e-28 | 113 |
| Msa1441710 | AT2G22475.1 | 33.113 | 151 | 100 | 1 | 244 | 394 | 147 | 296 | 5.68e-26 | 107 |
| Msa1441710 | AT1G28200.1 | 33.136 | 169 | 109 | 3 | 224 | 389 | 87 | 254 | 3.24e-27 | 109 |
| Msa1441710 | AT1G28200.1 | 33.333 | 150 | 95 | 2 | 60 | 209 | 97 | 241 | 7.12e-26 | 105 |
| Msa1441710 | AT1G28200.2 | 33.136 | 169 | 109 | 3 | 224 | 389 | 87 | 254 | 3.24e-27 | 109 |
| Msa1441710 | AT1G28200.2 | 33.333 | 150 | 95 | 2 | 60 | 209 | 97 | 241 | 7.12e-26 | 105 |
| Msa1441710 | AT5G13200.2 | 39.362 | 94 | 57 | 0 | 244 | 337 | 115 | 208 | 8.62e-17 | 79.0 |
| Msa1441710 | AT5G13200.2 | 35.135 | 111 | 68 | 1 | 60 | 170 | 102 | 208 | 1.18e-16 | 78.6 |
| Msa1441710 | AT2G22475.2 | 31.579 | 114 | 73 | 2 | 59 | 172 | 133 | 241 | 1.93e-12 | 67.4 |
Find 82 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCATGACATAGTTAT+TGG | 0.132924 | tig0029335:-31060 | Msa1441710:CDS |
| TCTAAGTATGTAGTATTTAA+AGG | 0.275399 | tig0029335:+31218 | None:intergenic |
| GTTCAGGACATACCTTATAT+TGG | 0.280926 | tig0029335:+26706 | None:intergenic |
| AAGGGTACTCACCATGTTCT+TGG | 0.303202 | tig0029335:+30777 | None:intergenic |
| AGGGGTACTCACCATGTTCT+TGG | 0.305997 | tig0029335:+27138 | None:intergenic |
| CCCTTCATTGACCTCAAAAT+AGG | 0.349137 | tig0029335:+26088 | None:intergenic |
| ATGAAGGGAGATTATTGTTA+TGG | 0.350767 | tig0029335:-26073 | Msa1441710:three_prime_UTR |
| ACCACATCTGGTCCTCTATC+TGG | 0.375547 | tig0029335:-30501 | Msa1441710:CDS |
| TAGAGGAAGTTATGCTTACT+TGG | 0.381511 | tig0029335:+31175 | None:intergenic |
| AGGGGCTCAAATTCTTCAAA+TGG | 0.390450 | tig0029335:-30607 | Msa1441710:CDS |
| TAAAGAGGACGTTGAGCTTA+GGG | 0.393383 | tig0029335:-26941 | Msa1441710:CDS |
| ACACACTTGATCTTCTTCAA+TGG | 0.403217 | tig0029335:+30291 | None:intergenic |
| AAGATTTGTGTTTGGTTGAA+AGG | 0.405842 | tig0029335:+31112 | None:intergenic |
| TAAAGAGGACATTGAGCTTA+GGG | 0.407061 | tig0029335:-30626 | Msa1441710:CDS |
| CTAAGTATGTAGTATTTAAA+GGG | 0.415500 | tig0029335:+31219 | None:intergenic |
| AATGCGTAGGATCCAATATA+AGG | 0.416880 | tig0029335:-26718 | Msa1441710:intron |
| ATAAAGAGGACGTTGAGCTT+AGG | 0.430032 | tig0029335:-26942 | Msa1441710:CDS |
| AATGCGTAGGATCCGCTATA+AGG | 0.432925 | tig0029335:-30403 | Msa1441710:intron |
| TGTTATCTCTCCACCACATC+TGG | 0.435363 | tig0029335:-30513 | Msa1441710:CDS |
| GAAAGGACTATAGAAGTAGA+AGG | 0.439099 | tig0029335:+31129 | None:intergenic |
| CGAAGATATGCTTTGAAATG+AGG | 0.444217 | tig0029335:-26349 | Msa1441710:three_prime_UTR |
| ATGTTATTATGCTCTAATAG+TGG | 0.463690 | tig0029335:+26422 | None:intergenic |
| TGTTATCTCTCCACCACATC+CGG | 0.474249 | tig0029335:-26828 | Msa1441710:CDS |
| CCTCTTCATCTCCAATGAAA+AGG | 0.477437 | tig0029335:-26790 | Msa1441710:CDS |
| CCTCTTCATCTCCAATGAAA+AGG | 0.477437 | tig0029335:-30475 | Msa1441710:CDS |
| ATAAAGAGGACATTGAGCTT+AGG | 0.479333 | tig0029335:-30627 | Msa1441710:CDS |
| TGATATATAAGATTTGTGTT+TGG | 0.481083 | tig0029335:+31104 | None:intergenic |
| ACCACATCCGGTCCTCTAGC+TGG | 0.484625 | tig0029335:-26816 | Msa1441710:CDS |
| CTTTGAAATGAGGGACTTCG+TGG | 0.487322 | tig0029335:-26339 | Msa1441710:three_prime_UTR |
| TATAGAAGTAGAAGGTGAAG+AGG | 0.489350 | tig0029335:+31137 | None:intergenic |
| CTACATACTTAGACTACAAA+GGG | 0.492097 | tig0029335:-31208 | Msa1441710:five_prime_UTR |
| CTTGATCTTCTTCAATGGAA+TGG | 0.496717 | tig0029335:+30296 | None:intergenic |
| GGGGCTCAAATTCTTCAAAT+GGG | 0.501460 | tig0029335:-30606 | Msa1441710:CDS |
| GACTCTTTGTGAGAGACTAT+CGG | 0.507719 | tig0029335:+30799 | None:intergenic |
| CTAACCAGGAAAAGCGCTGC+AGG | 0.509603 | tig0029335:-30826 | Msa1441710:CDS |
| TATTGTTCTCTCACTGCAGA+AGG | 0.510226 | tig0029335:+26764 | None:intergenic |
| TATTGTTCTCTCACTGCAGA+AGG | 0.510226 | tig0029335:+30449 | None:intergenic |
| AAGTAGAAGGTGAAGAGGAA+TGG | 0.513002 | tig0029335:+31142 | None:intergenic |
| TGAATAATACTCTGCCAATA+CGG | 0.521353 | tig0029335:+26132 | None:intergenic |
| CTTGATATTCTTCAGTGGAA+TGG | 0.537049 | tig0029335:+26611 | None:intergenic |
| GAAGATATGCTTTGAAATGA+GGG | 0.540103 | tig0029335:-26348 | Msa1441710:three_prime_UTR |
| TGTTATGGTAGAAAACAAGA+TGG | 0.540307 | tig0029335:-26058 | Msa1441710:three_prime_UTR |
| ATGAAGAGGAGACCAGATAG+AGG | 0.541014 | tig0029335:+30489 | None:intergenic |
| AACTTTCAAATATCTCGAGC+AGG | 0.543455 | tig0029335:-26481 | Msa1441710:CDS |
| ACCAGCTAGAGGACCGGATG+TGG | 0.545746 | tig0029335:+26815 | None:intergenic |
| TTGATATTGACATTGATTAG+TGG | 0.546039 | tig0029335:+30969 | None:intergenic |
| GGGGCTCAAATTCTTCAAGT+AGG | 0.547691 | tig0029335:-26921 | Msa1441710:CDS |
| GAGGAGACCAGCTAGAGGAC+CGG | 0.553573 | tig0029335:+26809 | None:intergenic |
| TTAGTGTGAGAGAAGGAGAG+AGG | 0.554677 | tig0029335:-26869 | Msa1441710:CDS |
| AGCTAGAGGACCGGATGTGG+TGG | 0.559552 | tig0029335:+26818 | None:intergenic |
| ACATATCTAAAACAATAAAG+AGG | 0.563370 | tig0029335:-26956 | Msa1441710:CDS |
| ACATATCTAAAACAATAAAG+AGG | 0.563370 | tig0029335:-30641 | Msa1441710:CDS |
| ACTACATACTTAGACTACAA+AGG | 0.565243 | tig0029335:-31209 | Msa1441710:five_prime_UTR |
| ATGGTTCATTCATATAGTAT+CGG | 0.565704 | tig0029335:-26263 | Msa1441710:three_prime_UTR |
| ATAAAAGTCTTCAATCAGAA+AGG | 0.566655 | tig0029335:-26744 | Msa1441710:CDS |
| ATAAAAGTCTTCAATCAGAA+AGG | 0.566655 | tig0029335:-30429 | Msa1441710:CDS |
| TGTTAATATAGAGACCGTAT+TGG | 0.573700 | tig0029335:-26146 | Msa1441710:three_prime_UTR |
| AGGTAGAGCAAATTCTAACC+AGG | 0.586749 | tig0029335:-30840 | Msa1441710:CDS |
| ATATTAACAGTCACTGCTTG+CGG | 0.587455 | tig0029335:+26160 | None:intergenic |
| TTAGTGTGACAGAAGGGGAA+AGG | 0.588982 | tig0029335:-30554 | Msa1441710:CDS |
| AATTCTTCAAATGGGTGGAG+TGG | 0.590708 | tig0029335:-30598 | Msa1441710:CDS |
| CCAGGAAAAGCGCTGCAGGA+AGG | 0.598245 | tig0029335:-30822 | Msa1441710:CDS |
| GCTCAAATTCTTCAAGTAGG+TGG | 0.599531 | tig0029335:-26918 | Msa1441710:CDS |
| ATATGATCAAATTCAACAGT+CGG | 0.601025 | tig0029335:-31016 | Msa1441710:CDS |
| ATCAGAAAGGTCAAATGCGT+AGG | 0.606952 | tig0029335:-26731 | Msa1441710:CDS |
| ATCAGAAAGGTCAAATGCGT+AGG | 0.606952 | tig0029335:-30416 | Msa1441710:CDS |
| AATTCTTCAAGTAGGTGGAG+TGG | 0.608118 | tig0029335:-26913 | Msa1441710:CDS |
| GCTCAAATTCTTCAAATGGG+TGG | 0.612320 | tig0029335:-30603 | Msa1441710:CDS |
| TGTTGATGAAAGAGATCACT+CGG | 0.612401 | tig0029335:-26204 | Msa1441710:three_prime_UTR |
| AGATAGAGGACCAGATGTGG+TGG | 0.622202 | tig0029335:+30503 | None:intergenic |
| ACACACTTGATATTCTTCAG+TGG | 0.629365 | tig0029335:+26606 | None:intergenic |
| ACCAGATAGAGGACCAGATG+TGG | 0.629958 | tig0029335:+30500 | None:intergenic |
| ATATGTTGCTGAGATGATTG+TGG | 0.633252 | tig0029335:+31035 | None:intergenic |
| AAAGAGGACGTTGAGCTTAG+GGG | 0.634036 | tig0029335:-26940 | Msa1441710:CDS |
| TCACAAAGAGTCCAAGAACA+TGG | 0.635074 | tig0029335:-30788 | Msa1441710:CDS |
| TGAAGAAGATCAAGTGTGTG+AGG | 0.640170 | tig0029335:-30287 | Msa1441710:CDS |
| AATTCCAACCAGCAAAAGCG+CGG | 0.640219 | tig0029335:-27191 | Msa1441710:CDS |
| ATGAAGAGGAGACCAGCTAG+AGG | 0.648963 | tig0029335:+26804 | None:intergenic |
| ACACAAAGAGTCCAAGAACA+TGG | 0.649976 | tig0029335:-27149 | Msa1441710:CDS |
| AAAGAGGACATTGAGCTTAG+GGG | 0.650107 | tig0029335:-30625 | Msa1441710:CDS |
| GTTCACGACTTACCTTATAG+CGG | 0.664347 | tig0029335:+30391 | None:intergenic |
| CATTCATCGACAGAGAAGAG+AGG | 0.697110 | tig0029335:-26111 | Msa1441710:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTTAATTAATTAATAA+TGG | - | tig0029335:27969-27988 | Msa1441710:intron | 0.0% |
| !!! | TGAAAGTTTTTTTATATTTT+AGG | + | tig0029335:30759-30778 | None:intergenic | 10.0% |
| !!! | TGAATTTTAAATTCAATGAA+GGG | - | tig0029335:27449-27468 | Msa1441710:intron | 15.0% |
| !! | TAATTGACACAATTATTTAA+AGG | + | tig0029335:27658-27677 | None:intergenic | 15.0% |
| !!! | TGACTATCAAAATTTAAAAT+TGG | + | tig0029335:27923-27942 | None:intergenic | 15.0% |
| !! | TTACTAATTATTCACTTTAT+AGG | + | tig0029335:28917-28936 | None:intergenic | 15.0% |
| !!! | TTCATCATTTACTTTATTTT+TGG | - | tig0029335:29301-29320 | Msa1441710:intron | 15.0% |
| !!! | AAGATAATATTTTGACATAA+TGG | + | tig0029335:29551-29570 | None:intergenic | 15.0% |
| !! | CTAAGTATGTAGTATTTAAA+GGG | + | tig0029335:26036-26055 | None:intergenic | 20.0% |
| !! | TCTAAGTATGTAGTATTTAA+AGG | + | tig0029335:26037-26056 | None:intergenic | 20.0% |
| !! | TGATATATAAGATTTGTGTT+TGG | + | tig0029335:26151-26170 | None:intergenic | 20.0% |
| !! | TTAAATTAGATTCTTGTAAC+AGG | + | tig0029335:26343-26362 | None:intergenic | 20.0% |
| !!! | TTAATCTAATCAAGTATTGA+TGG | - | tig0029335:26359-26378 | Msa1441710:three_prime_UTR | 20.0% |
| !! | AATTAGATACAAAAGGAAAA+TGG | + | tig0029335:26548-26567 | None:intergenic | 20.0% |
| !! | TAAAGAGAATTAGATACAAA+AGG | + | tig0029335:26555-26574 | None:intergenic | 20.0% |
| !!! | ACATATCTAAAACAATAAAG+AGG | - | tig0029335:26611-26630 | Msa1441710:CDS | 20.0% |
| !! | ACATAACAAATATTGGATTA+GGG | + | tig0029335:26928-26947 | None:intergenic | 20.0% |
| !! | TACATAACAAATATTGGATT+AGG | + | tig0029335:26929-26948 | None:intergenic | 20.0% |
| !!! | CTTCATTGAATTTAAAATTC+AGG | + | tig0029335:27450-27469 | None:intergenic | 20.0% |
| !!! | CTGAATTTTAAATTCAATGA+AGG | - | tig0029335:27448-27467 | Msa1441710:intron | 20.0% |
| !! | ATTATTGTTATGGTTGAAAA+AGG | - | tig0029335:27474-27493 | Msa1441710:intron | 20.0% |
| !! | TCTATATGTTATGTATAAGT+AGG | + | tig0029335:28298-28317 | None:intergenic | 20.0% |
| !! | AAGAAAAACTGAAAAAGTAA+AGG | - | tig0029335:28338-28357 | Msa1441710:intron | 20.0% |
| !!! | CTTTGTTAGTTACTTTAATT+TGG | - | tig0029335:28577-28596 | Msa1441710:intron | 20.0% |
| !! | TAGTAAAGTGAGAAAATTAA+AGG | - | tig0029335:28931-28950 | Msa1441710:intron | 20.0% |
| !! | TAAAATTGAAATCCTAGAAT+AGG | + | tig0029335:29464-29483 | None:intergenic | 20.0% |
| !! | TATTTAAAAGGATGAAAAGT+AGG | + | tig0029335:29670-29689 | None:intergenic | 20.0% |
| !!! | CTAATTTCATTAAGTATTGA+TGG | - | tig0029335:29999-30018 | Msa1441710:intron | 20.0% |
| !! | CATAAATTGTACCATATTAT+TGG | + | tig0029335:30159-30178 | None:intergenic | 20.0% |
| !!! | ACATATCTAAAACAATAAAG+AGG | - | tig0029335:26611-26630 | Msa1441710:CDS | 20.0% |
| !!! | TATATGTACTTATTTAGTTC+AGG | + | tig0029335:30565-30584 | None:intergenic | 20.0% |
| !! | ACATAACAAATATTGGATTA+GGG | + | tig0029335:26928-26947 | None:intergenic | 20.0% |
| ! | ATATGATCAAATTCAACAGT+CGG | - | tig0029335:26236-26255 | Msa1441710:three_prime_UTR | 25.0% |
| !! | TTGATATTGACATTGATTAG+TGG | + | tig0029335:26286-26305 | None:intergenic | 25.0% |
| !! | ATAAAGTTATACTTTTGCAC+TGG | + | tig0029335:26317-26336 | None:intergenic | 25.0% |
| ! | ATAAAAGTCTTCAATCAGAA+AGG | - | tig0029335:26823-26842 | Msa1441710:CDS | 25.0% |
| !!! | ATCCAATATTTGTTATGTAC+AGG | - | tig0029335:26930-26949 | Msa1441710:CDS | 25.0% |
| ! | AACCTGTACATAACAAATAT+TGG | + | tig0029335:26935-26954 | None:intergenic | 25.0% |
| !! | ATGTTTATGTACTTTTGTGT+TGG | + | tig0029335:27012-27031 | None:intergenic | 25.0% |
| !! | TGAAAGTTTTCTGATACTTT+AGG | + | tig0029335:27074-27093 | None:intergenic | 25.0% |
| ! | TTCTTTATGTTATGCTCTAA+GGG | + | tig0029335:27151-27170 | None:intergenic | 25.0% |
| ! | ATTCTTTATGTTATGCTCTA+AGG | + | tig0029335:27152-27171 | None:intergenic | 25.0% |
| !! | CAACATATTGTTGATAAAGT+TGG | - | tig0029335:27323-27342 | Msa1441710:intron | 25.0% |
| ! | GCTTATTTAAACTAACTGAT+TGG | + | tig0029335:27636-27655 | None:intergenic | 25.0% |
| !!! | TGTGTCAATTATTTCTTTTG+TGG | - | tig0029335:27667-27686 | Msa1441710:intron | 25.0% |
| ! | TAAAAAAGTAAGAATCCTTC+AGG | + | tig0029335:27753-27772 | None:intergenic | 25.0% |
| !!! | AAGGATTCTTACTTTTTTAG+TGG | - | tig0029335:27754-27773 | Msa1441710:intron | 25.0% |
| ! | ATTTCATCAAGAGAGTTATA+TGG | - | tig0029335:28068-28087 | Msa1441710:intron | 25.0% |
| ! | CAAGGTAAGAAAAAGTAAAT+AGG | - | tig0029335:28245-28264 | Msa1441710:intron | 25.0% |
| ! | TATAAGTAGGATGTAGTATA+TGG | + | tig0029335:28285-28304 | None:intergenic | 25.0% |
| ! | AAAACTGAAAAAGTAAAGGA+AGG | - | tig0029335:28342-28361 | Msa1441710:intron | 25.0% |
| ! | TTTGTTCTACTACTATATAC+CGG | + | tig0029335:28433-28452 | None:intergenic | 25.0% |
| ! | TAGTAGAACAAAATCAAAAG+TGG | - | tig0029335:28441-28460 | Msa1441710:intron | 25.0% |
| ! | AAATCAAAAGTGGTAGTTAA+TGG | - | tig0029335:28451-28470 | Msa1441710:intron | 25.0% |
| !!! | AACCATGATTTGTTTATCAA+CGG | - | tig0029335:28967-28986 | Msa1441710:intron | 25.0% |
| ! | AGCATTTCAATCATATATCT+TGG | - | tig0029335:29138-29157 | Msa1441710:intron | 25.0% |
| ! | AGATAGTAAAAATGAAGGTA+GGG | - | tig0029335:29161-29180 | Msa1441710:intron | 25.0% |
| ! | AGAATTCTCTAAATTCTCTT+GGG | + | tig0029335:29219-29238 | None:intergenic | 25.0% |
| ! | TAGAATTCTCTAAATTCTCT+TGG | + | tig0029335:29220-29239 | None:intergenic | 25.0% |
| !!! | TAGAATAGGTTTGTTTTTAG+AGG | + | tig0029335:29450-29469 | None:intergenic | 25.0% |
| ! | TCTAAAAACAAACCTATTCT+AGG | - | tig0029335:29449-29468 | Msa1441710:intron | 25.0% |
| ! | AGCATGTTGAATGATTAATA+AGG | + | tig0029335:29805-29824 | None:intergenic | 25.0% |
| !! | ATGTTCATGATTCTTTTAAC+AGG | + | tig0029335:29974-29993 | None:intergenic | 25.0% |
| ! | ATATAGATACCACATACAAA+AGG | + | tig0029335:30193-30212 | None:intergenic | 25.0% |
| ! | ATAAAAGTCTTCAATCAGAA+AGG | - | tig0029335:26823-26842 | Msa1441710:CDS | 25.0% |
| ! | CACATAACAAATATTGGATT+AGG | + | tig0029335:30614-30633 | None:intergenic | 25.0% |
| !! | ATGTTTATGTACTTTTGTGT+TGG | + | tig0029335:27012-27031 | None:intergenic | 25.0% |
| ! | ATGTTATTATGCTCTAATAG+TGG | + | tig0029335:30833-30852 | None:intergenic | 25.0% |
| ! | ATGGTTCATTCATATAGTAT+CGG | - | tig0029335:30989-31008 | Msa1441710:CDS | 25.0% |
| ACTACATACTTAGACTACAA+AGG | - | tig0029335:26043-26062 | Msa1441710:three_prime_UTR | 30.0% | |
| CTACATACTTAGACTACAAA+GGG | - | tig0029335:26044-26063 | Msa1441710:three_prime_UTR | 30.0% | |
| AAGATTTGTGTTTGGTTGAA+AGG | + | tig0029335:26143-26162 | None:intergenic | 30.0% | |
| CTTCTTCATGACATAGTTAT+TGG | - | tig0029335:26192-26211 | Msa1441710:three_prime_UTR | 30.0% | |
| ATAATGTGCTTCAATGTTTC+AGG | - | tig0029335:26392-26411 | Msa1441710:three_prime_UTR | 30.0% | |
| GTGAAAAATTTCAGTGAGAT+CGG | - | tig0029335:26582-26601 | Msa1441710:CDS | 30.0% | |
| TGAAAAATTTCAGTGAGATC+GGG | - | tig0029335:26583-26602 | Msa1441710:CDS | 30.0% | |
| !!! | AGTATTTTAGTGTGACAGAA+GGG | - | tig0029335:26692-26711 | Msa1441710:intron | 30.0% |
| !!! | AATTTTGACTTCTGGCTTAT+GGG | - | tig0029335:27045-27064 | Msa1441710:intron | 30.0% |
| AACTTTCAAATATATCGAGC+AGG | - | tig0029335:27086-27105 | Msa1441710:intron | 30.0% | |
| ! | AAAACACCTCATCTTAGTTT+TGG | - | tig0029335:27264-27283 | Msa1441710:intron | 30.0% |
| ATGAAGGGAGATTATTGTTA+TGG | - | tig0029335:27464-27483 | Msa1441710:intron | 30.0% | |
| TTGTTATGGTTGAAAAAGGA+TGG | - | tig0029335:27478-27497 | Msa1441710:intron | 30.0% | |
| GTTTCTTAATGCAAAAGAAC+TGG | + | tig0029335:27731-27750 | None:intergenic | 30.0% | |
| ! | TTTTGCATTAAGAAACCTGA+AGG | - | tig0029335:27735-27754 | Msa1441710:intron | 30.0% |
| AAAGATTAGCATAAGTTAGC+AGG | + | tig0029335:28131-28150 | None:intergenic | 30.0% | |
| !!! | TTTCTGAGATTTTTCAATCC+CGG | - | tig0029335:28411-28430 | Msa1441710:intron | 30.0% |
| TTGTTCTACTACTATATACC+GGG | + | tig0029335:28432-28451 | None:intergenic | 30.0% | |
| AAATTAAGAGATTGAGCACA+TGG | - | tig0029335:28649-28668 | Msa1441710:intron | 30.0% | |
| TTTATCTTATGAGTGAGGAT+AGG | + | tig0029335:28830-28849 | None:intergenic | 30.0% | |
| ATCCTCACTCATAAGATAAA+TGG | - | tig0029335:28830-28849 | Msa1441710:intron | 30.0% | |
| ATCCATTTATCTTATGAGTG+AGG | + | tig0029335:28835-28854 | None:intergenic | 30.0% | |
| !!! | TAAGCTGAAGTTTTGTTAAC+TGG | + | tig0029335:28858-28877 | None:intergenic | 30.0% |
| CCTAGAGTATGAATGATATT+TGG | + | tig0029335:28886-28905 | None:intergenic | 30.0% | |
| CCAAATATCATTCATACTCT+AGG | - | tig0029335:28883-28902 | Msa1441710:intron | 30.0% | |
| ! | AACCGTTGATAAACAAATCA+TGG | + | tig0029335:28972-28991 | None:intergenic | 30.0% |
| CTTGGAGATAGTAAAAATGA+AGG | - | tig0029335:29156-29175 | Msa1441710:intron | 30.0% | |
| GAGATAGTAAAAATGAAGGT+AGG | - | tig0029335:29160-29179 | Msa1441710:intron | 30.0% | |
| GAATTCTCTAAATTCTCTTG+GGG | + | tig0029335:29218-29237 | None:intergenic | 30.0% | |
| TTTGGAAAGTAGGCATTATT+AGG | + | tig0029335:29335-29354 | None:intergenic | 30.0% | |
| ATAATGCCTACTTTCCAAAA+TGG | - | tig0029335:29336-29355 | Msa1441710:intron | 30.0% | |
| CTTTCAGAAAAAGATGGTAA+AGG | + | tig0029335:29516-29535 | None:intergenic | 30.0% | |
| !!! | TTTTGACATAATGGACTGTT+TGG | + | tig0029335:29542-29561 | None:intergenic | 30.0% |
| TATTACATCAACCAAGATCA+TGG | - | tig0029335:29610-29629 | Msa1441710:intron | 30.0% | |
| CTAAGGAGGTAGTATTTAAA+AGG | + | tig0029335:29682-29701 | None:intergenic | 30.0% | |
| TGAAACTGATGATACATGAT+TGG | + | tig0029335:29862-29881 | None:intergenic | 30.0% | |
| TGGATATTGAATTTGACAAG+AGG | + | tig0029335:29917-29936 | None:intergenic | 30.0% | |
| ! | ACAAAGTTTTACCATTGCTT+TGG | + | tig0029335:29948-29967 | None:intergenic | 30.0% |
| ! | TAGATGGGTTTCCAATAATA+TGG | - | tig0029335:30145-30164 | Msa1441710:intron | 30.0% |
| ! | AACCATTTTCCTTTTGTATG+TGG | - | tig0029335:30181-30200 | Msa1441710:intron | 30.0% |
| TACCACATACAAAAGGAAAA+TGG | + | tig0029335:30186-30205 | None:intergenic | 30.0% | |
| TGAAAAATTTCAGTGAGACT+CGG | - | tig0029335:30268-30287 | Msa1441710:CDS | 30.0% | |
| !! | ATCCAATATTTGTTATGTGC+AGG | - | tig0029335:30615-30634 | Msa1441710:CDS | 30.0% |
| !!! | GATTTTGATTTCTGGCTTAT+GGG | - | tig0029335:30730-30749 | Msa1441710:intron | 30.0% |
| !! | GAAGATATGCTTTGAAATGA+GGG | - | tig0029335:30904-30923 | Msa1441710:intron | 30.0% |
| ! | TGTGCATCTATTTTCATCTT+GGG | + | tig0029335:30970-30989 | None:intergenic | 30.0% |
| ! | ATGTGCATCTATTTTCATCT+TGG | + | tig0029335:30971-30990 | None:intergenic | 30.0% |
| AAGATGAAAATAGATGCACA+TGG | - | tig0029335:30970-30989 | Msa1441710:CDS | 30.0% | |
| TGTTAATATAGAGACCGTAT+TGG | - | tig0029335:31106-31125 | Msa1441710:five_prime_UTR | 30.0% | |
| TGAATAATACTCTGCCAATA+CGG | + | tig0029335:31123-31142 | None:intergenic | 30.0% | |
| ATGAAGGGAGATTATTGTTA+TGG | - | tig0029335:27464-27483 | Msa1441710:intron | 30.0% | |
| TGTTATGGTAGAAAACAAGA+TGG | - | tig0029335:31194-31213 | Msa1441710:five_prime_UTR | 30.0% | |
| TAGAGGAAGTTATGCTTACT+TGG | + | tig0029335:26080-26099 | None:intergenic | 35.0% | |
| TATAGAAGTAGAAGGTGAAG+AGG | + | tig0029335:26118-26137 | None:intergenic | 35.0% | |
| GAAAGGACTATAGAAGTAGA+AGG | + | tig0029335:26126-26145 | None:intergenic | 35.0% | |
| ATATGTTGCTGAGATGATTG+TGG | + | tig0029335:26220-26239 | None:intergenic | 35.0% | |
| !! | TATACTTTTGCACTGGTGTT+TGG | + | tig0029335:26310-26329 | None:intergenic | 35.0% |
| ATAAAGAGGACATTGAGCTT+AGG | - | tig0029335:26625-26644 | Msa1441710:intron | 35.0% | |
| TAAAGAGGACATTGAGCTTA+GGG | - | tig0029335:26626-26645 | Msa1441710:intron | 35.0% | |
| !!! | CAGTATTTTAGTGTGACAGA+AGG | - | tig0029335:26691-26710 | Msa1441710:intron | 35.0% |
| !!! | GTATTTTAGTGTGACAGAAG+GGG | - | tig0029335:26693-26712 | Msa1441710:intron | 35.0% |
| CTTGATCTTCTTCAATGGAA+TGG | + | tig0029335:26959-26978 | None:intergenic | 35.0% | |
| ACACACTTGATCTTCTTCAA+TGG | + | tig0029335:26964-26983 | None:intergenic | 35.0% | |
| !!! | CAATTTTGACTTCTGGCTTA+TGG | - | tig0029335:27044-27063 | Msa1441710:intron | 35.0% |
| !! | TTTATGTTATGCTCTAAGGG+TGG | + | tig0029335:27148-27167 | None:intergenic | 35.0% |
| !! | TGAAGATATGCTTTGAAACG+AGG | - | tig0029335:27229-27248 | Msa1441710:intron | 35.0% |
| !! | GAAGATATGCTTTGAAACGA+GGG | - | tig0029335:27230-27249 | Msa1441710:intron | 35.0% |
| ATGAAGCCAAAACTAAGATG+AGG | + | tig0029335:27273-27292 | None:intergenic | 35.0% | |
| TGGCTTCATTGATATTAGCT+CGG | - | tig0029335:27284-27303 | Msa1441710:intron | 35.0% | |
| TATTAGCTCGGATGTAAACT+TGG | - | tig0029335:27296-27315 | Msa1441710:intron | 35.0% | |
| ! | TGGTAATGCAAGAGATCATT+TGG | - | tig0029335:27343-27362 | Msa1441710:intron | 35.0% |
| TATGGTTGAAAAAGGATGGA+AGG | - | tig0029335:27482-27501 | Msa1441710:intron | 35.0% | |
| !! | TTTTCTTGTAGGGGTTGATT+TGG | + | tig0029335:27841-27860 | None:intergenic | 35.0% |
| ! | TTGCACCATGTTTTCTTGTA+GGG | + | tig0029335:27851-27870 | None:intergenic | 35.0% |
| ! | CTGTTTTGTAACCTAGTACA+AGG | + | tig0029335:27886-27905 | None:intergenic | 35.0% |
| CTTGTACTAGGTTACAAAAC+AGG | - | tig0029335:27884-27903 | Msa1441710:intron | 35.0% | |
| CTGAAAAGTGAATTGTGTTG+TGG | - | tig0029335:28103-28122 | Msa1441710:intron | 35.0% | |
| !! | ATCATCAAAGCATTTTGAGC+TGG | - | tig0029335:28183-28202 | Msa1441710:intron | 35.0% |
| ATCGCAAGGCAATTTAATGA+AGG | + | tig0029335:28224-28243 | None:intergenic | 35.0% | |
| TTAAATTGCCTTGCGATACA+AGG | - | tig0029335:28227-28246 | Msa1441710:intron | 35.0% | |
| ! | TTTTCTTACCTTGTATCGCA+AGG | + | tig0029335:28238-28257 | None:intergenic | 35.0% |
| AAAGTAAAGGAAGGTGAATG+AGG | - | tig0029335:28351-28370 | Msa1441710:intron | 35.0% | |
| GTCAAGTTTGTGAAAGTTCA+AGG | - | tig0029335:28376-28395 | Msa1441710:intron | 35.0% | |
| GTGGTAGTTAATGGTTCAAA+AGG | - | tig0029335:28460-28479 | Msa1441710:intron | 35.0% | |
| TTCAAAAGGCAGAGTATAGT+AGG | - | tig0029335:28474-28493 | Msa1441710:intron | 35.0% | |
| ! | GAATAATAACTGACTCTGTC+TGG | - | tig0029335:28599-28618 | Msa1441710:intron | 35.0% |
| ! | AGCACATGGTTCTGTATAAA+AGG | - | tig0029335:28663-28682 | Msa1441710:intron | 35.0% |
| ! | GCACATGGTTCTGTATAAAA+GGG | - | tig0029335:28664-28683 | Msa1441710:intron | 35.0% |
| ATATCCATGTGCATCCAATA+TGG | - | tig0029335:28699-28718 | Msa1441710:intron | 35.0% | |
| !! | ACAAATGGGTTACATTCACT+TGG | - | tig0029335:28756-28775 | Msa1441710:intron | 35.0% |
| GGATAGGATTACTCAATTGA+GGG | + | tig0029335:28814-28833 | None:intergenic | 35.0% | |
| AGGATAGGATTACTCAATTG+AGG | + | tig0029335:28815-28834 | None:intergenic | 35.0% | |
| ATCAGCATTGCTTTATGAGT+CGG | + | tig0029335:29263-29282 | None:intergenic | 35.0% | |
| !! | AATGCACCATTTTGGAAAGT+AGG | + | tig0029335:29345-29364 | None:intergenic | 35.0% |
| ! | TTTGGAGAAATGCACCATTT+TGG | + | tig0029335:29353-29372 | None:intergenic | 35.0% |
| AAAATGGTGCATTTCTCCAA+AGG | - | tig0029335:29352-29371 | Msa1441710:intron | 35.0% | |
| AAATGGTGCATTTCTCCAAA+GGG | - | tig0029335:29353-29372 | Msa1441710:intron | 35.0% | |
| ACAAGATTCCGTAGTGTATA+GGG | + | tig0029335:29394-29413 | None:intergenic | 35.0% | |
| AACAAGATTCCGTAGTGTAT+AGG | + | tig0029335:29395-29414 | None:intergenic | 35.0% | |
| !! | GTTTTTAGAGGCTTAGAGAA+AGG | + | tig0029335:29438-29457 | None:intergenic | 35.0% |
| ! | TGGTTGCTTTCAGAAAAAGA+TGG | + | tig0029335:29522-29541 | None:intergenic | 35.0% |
| TAATAAAGACACTACCCACA+TGG | + | tig0029335:29595-29614 | None:intergenic | 35.0% | |
| ! | ATCAGTCCTTTTGTGTTCTA+AGG | + | tig0029335:29699-29718 | None:intergenic | 35.0% |
| TAGAGGAAGTTATGTTTGCT+TGG | + | tig0029335:29726-29745 | None:intergenic | 35.0% | |
| TTGTTGAAAAGACTAGCACT+AGG | + | tig0029335:29774-29793 | None:intergenic | 35.0% | |
| AACTAGCTCATGATGAATTG+AGG | + | tig0029335:29830-29849 | None:intergenic | 35.0% | |
| ATTCATCATGAGCTAGTTGT+TGG | - | tig0029335:29832-29851 | Msa1441710:intron | 35.0% | |
| !! | TTTACCATTGCTTTGGTGTT+TGG | + | tig0029335:29941-29960 | None:intergenic | 35.0% |
| AAACCCATCTAAGTCTTACA+GGG | + | tig0029335:30136-30155 | None:intergenic | 35.0% | |
| !!! | CAGTATTTTAGTGTGAGAGA+AGG | - | tig0029335:30376-30395 | Msa1441710:intron | 35.0% |
| AATGCGTAGGATCCAATATA+AGG | - | tig0029335:30534-30553 | Msa1441710:CDS | 35.0% | |
| GTTCAGGACATACCTTATAT+TGG | + | tig0029335:30549-30568 | None:intergenic | 35.0% | |
| CACCTGCACATAACAAATAT+TGG | + | tig0029335:30620-30639 | None:intergenic | 35.0% | |
| !! | CAATATTTGTTATGTGCAGG+TGG | - | tig0029335:30618-30637 | Msa1441710:CDS | 35.0% |
| CTTGATATTCTTCAGTGGAA+TGG | + | tig0029335:30644-30663 | None:intergenic | 35.0% | |
| ACACACTTGATATTCTTCAG+TGG | + | tig0029335:30649-30668 | None:intergenic | 35.0% | |
| !!! | CAGAAGACGATTTTGATTTC+TGG | - | tig0029335:30722-30741 | Msa1441710:intron | 35.0% |
| !!! | CGATTTTGATTTCTGGCTTA+TGG | - | tig0029335:30729-30748 | Msa1441710:intron | 35.0% |
| AACTTTCAAATATCTCGAGC+AGG | - | tig0029335:30771-30790 | Msa1441710:intron | 35.0% | |
| !! | CGAAGATATGCTTTGAAATG+AGG | - | tig0029335:30903-30922 | Msa1441710:intron | 35.0% |
| ! | TGTTGATGAAAGAGATCACT+CGG | - | tig0029335:31048-31067 | Msa1441710:CDS | 35.0% |
| ATATTAACAGTCACTGCTTG+CGG | + | tig0029335:31095-31114 | None:intergenic | 35.0% | |
| !!! | CCTATTTTGAGGTCAATGAA+GGG | - | tig0029335:31164-31183 | Msa1441710:five_prime_UTR | 35.0% |
| !!! | GGAATGGTTTTAGCTCTTAG+AGG | + | tig0029335:26097-26116 | None:intergenic | 40.0% |
| AAGTAGAAGGTGAAGAGGAA+TGG | + | tig0029335:26113-26132 | None:intergenic | 40.0% | |
| AGGTAGAGCAAATTCTAACC+AGG | - | tig0029335:26412-26431 | Msa1441710:exon | 40.0% | |
| GACTCTTTGTGAGAGACTAT+CGG | + | tig0029335:26456-26475 | None:intergenic | 40.0% | |
| TCACAAAGAGTCCAAGAACA+TGG | - | tig0029335:26464-26483 | Msa1441710:CDS | 40.0% | |
| ! | TACCCTTGTAAGACTTGGTT+GGG | - | tig0029335:26491-26510 | Msa1441710:CDS | 40.0% |
| AACCCAACCAAGTCTTACAA+GGG | + | tig0029335:26496-26515 | None:intergenic | 40.0% | |
| AAACCCAACCAAGTCTTACA+AGG | + | tig0029335:26497-26516 | None:intergenic | 40.0% | |
| GGTTGGGTTTCAAAGAGATA+TGG | - | tig0029335:26507-26526 | Msa1441710:CDS | 40.0% | |
| AAAGAGGACATTGAGCTTAG+GGG | - | tig0029335:26627-26646 | Msa1441710:intron | 40.0% | |
| AGGGGCTCAAATTCTTCAAA+TGG | - | tig0029335:26645-26664 | Msa1441710:intron | 40.0% | |
| GGGGCTCAAATTCTTCAAAT+GGG | - | tig0029335:26646-26665 | Msa1441710:intron | 40.0% | |
| GCTCAAATTCTTCAAATGGG+TGG | - | tig0029335:26649-26668 | Msa1441710:intron | 40.0% | |
| AATTCTTCAAATGGGTGGAG+TGG | - | tig0029335:26654-26673 | Msa1441710:intron | 40.0% | |
| ! | CCTTTTCATTGGAGATGAAG+AGG | + | tig0029335:26780-26799 | None:intergenic | 40.0% |
| CCTCTTCATCTCCAATGAAA+AGG | - | tig0029335:26777-26796 | Msa1441710:CDS | 40.0% | |
| TATTGTTCTCTCACTGCAGA+AGG | + | tig0029335:26806-26825 | None:intergenic | 40.0% | |
| ATCAGAAAGGTCAAATGCGT+AGG | - | tig0029335:26836-26855 | Msa1441710:CDS | 40.0% | |
| GTTCACGACTTACCTTATAG+CGG | + | tig0029335:26864-26883 | None:intergenic | 40.0% | |
| TGAAGAAGATCAAGTGTGTG+AGG | - | tig0029335:26965-26984 | Msa1441710:CDS | 40.0% | |
| !!! | CAGTCGACAATTTTGACTTC+TGG | - | tig0029335:27037-27056 | Msa1441710:intron | 40.0% |
| GTTAATGACAAGGACCATAC+TGG | - | tig0029335:27395-27414 | Msa1441710:intron | 40.0% | |
| ATGGATACCTTCTACCAGTA+TGG | + | tig0029335:27412-27431 | None:intergenic | 40.0% | |
| ! | AAGGTATCCATCCATCCATA+GGG | - | tig0029335:27421-27440 | Msa1441710:intron | 40.0% |
| TTAAAATTCAGGCCTCCCTA+TGG | + | tig0029335:27439-27458 | None:intergenic | 40.0% | |
| AATGCAAAAGAACTGGCTGT+AGG | + | tig0029335:27724-27743 | None:intergenic | 40.0% | |
| TCAACCCCTACAAGAAAACA+TGG | - | tig0029335:27843-27862 | Msa1441710:intron | 40.0% | |
| ! | TGCACCATGTTTTCTTGTAG+GGG | + | tig0029335:27850-27869 | None:intergenic | 40.0% |
| ! | CTTGCACCATGTTTTCTTGT+AGG | + | tig0029335:27852-27871 | None:intergenic | 40.0% |
| ACATGGTGCAAGTCAATTTC+AGG | - | tig0029335:27860-27879 | Msa1441710:intron | 40.0% | |
| ! | TCAATTTCAGGCCTTGTACT+AGG | - | tig0029335:27872-27891 | Msa1441710:intron | 40.0% |
| ATATGTAGCACGTTCCCTAT+TGG | + | tig0029335:28549-28568 | None:intergenic | 40.0% | |
| GGATGCACATGGATATTATG+TGG | + | tig0029335:28695-28714 | None:intergenic | 40.0% | |
| !! | AGAGTGGGTTAGCAACAAAT+GGG | - | tig0029335:28742-28761 | Msa1441710:intron | 40.0% |
| CTCTAAATTCTCTTGGGGTA+AGG | + | tig0029335:29213-29232 | None:intergenic | 40.0% | |
| AAGAACTTCAACTTGCCATG+TGG | - | tig0029335:29577-29596 | Msa1441710:intron | 40.0% | |
| AGAACTTCAACTTGCCATGT+GGG | - | tig0029335:29578-29597 | Msa1441710:intron | 40.0% | |
| ! | GTGAATCTTGAGCCTTTTGT+GGG | + | tig0029335:29645-29664 | None:intergenic | 40.0% |
| ! | AGTGAATCTTGAGCCTTTTG+TGG | + | tig0029335:29646-29665 | None:intergenic | 40.0% |
| CTACCTCCTTAGAACACAAA+AGG | - | tig0029335:29690-29709 | Msa1441710:intron | 40.0% | |
| !!! | AGTCCTTTTGTGTTCTAAGG+AGG | + | tig0029335:29696-29715 | None:intergenic | 40.0% |
| ACACAAAGAGTCCAAGAACA+TGG | - | tig0029335:30103-30122 | Msa1441710:intron | 40.0% | |
| TACCCCTGTAAGACTTAGAT+GGG | - | tig0029335:30130-30149 | Msa1441710:intron | 40.0% | |
| AACCCATCTAAGTCTTACAG+GGG | + | tig0029335:30135-30154 | None:intergenic | 40.0% | |
| GAAACCCATCTAAGTCTTAC+AGG | + | tig0029335:30137-30156 | None:intergenic | 40.0% | |
| ATAAAGAGGACGTTGAGCTT+AGG | - | tig0029335:30310-30329 | Msa1441710:intron | 40.0% | |
| TAAAGAGGACGTTGAGCTTA+GGG | - | tig0029335:30311-30330 | Msa1441710:intron | 40.0% | |
| GCTCAAATTCTTCAAGTAGG+TGG | - | tig0029335:30334-30353 | Msa1441710:intron | 40.0% | |
| AATTCTTCAAGTAGGTGGAG+TGG | - | tig0029335:30339-30358 | Msa1441710:intron | 40.0% | |
| ! | CCTTTTCATTGGAGATGAAG+AGG | + | tig0029335:26780-26799 | None:intergenic | 40.0% |
| CCTCTTCATCTCCAATGAAA+AGG | - | tig0029335:26777-26796 | Msa1441710:CDS | 40.0% | |
| TATTGTTCTCTCACTGCAGA+AGG | + | tig0029335:26806-26825 | None:intergenic | 40.0% | |
| ATCAGAAAGGTCAAATGCGT+AGG | - | tig0029335:26836-26855 | Msa1441710:CDS | 40.0% | |
| !!! | GCCTATTTTGAGGTCAATGA+AGG | - | tig0029335:31163-31182 | Msa1441710:five_prime_UTR | 40.0% |
| CCCTTCATTGACCTCAAAAT+AGG | + | tig0029335:31167-31186 | None:intergenic | 40.0% | |
| !! | AAGGGTACTCACCATGTTCT+TGG | + | tig0029335:26478-26497 | None:intergenic | 45.0% |
| GTGAGTACCCTTGTAAGACT+TGG | - | tig0029335:26486-26505 | Msa1441710:CDS | 45.0% | |
| ! | GTACCCTTGTAAGACTTGGT+TGG | - | tig0029335:26490-26509 | Msa1441710:CDS | 45.0% |
| TTAGTGTGACAGAAGGGGAA+AGG | - | tig0029335:26698-26717 | Msa1441710:intron | 45.0% | |
| TGTTATCTCTCCACCACATC+TGG | - | tig0029335:26739-26758 | Msa1441710:CDS | 45.0% | |
| ATGAAGAGGAGACCAGATAG+AGG | + | tig0029335:26766-26785 | None:intergenic | 45.0% | |
| ! | GCAGAAGGCAACCTTTTCAT+TGG | + | tig0029335:26791-26810 | None:intergenic | 45.0% |
| AATGCGTAGGATCCGCTATA+AGG | - | tig0029335:26849-26868 | Msa1441710:CDS | 45.0% | |
| TCATTAACAGCCACTGCTTG+GGG | + | tig0029335:27383-27402 | None:intergenic | 45.0% | |
| GTCATTAACAGCCACTGCTT+GGG | + | tig0029335:27384-27403 | None:intergenic | 45.0% | |
| TGTCATTAACAGCCACTGCT+TGG | + | tig0029335:27385-27404 | None:intergenic | 45.0% | |
| AGCAGTGGCTGTTAATGACA+AGG | - | tig0029335:27385-27404 | Msa1441710:intron | 45.0% | |
| ACAAGGACCATACTGGTAGA+AGG | - | tig0029335:27402-27421 | Msa1441710:intron | 45.0% | |
| !! | GAAGGTATCCATCCATCCAT+AGG | - | tig0029335:27420-27439 | Msa1441710:intron | 45.0% |
| AAGAACTGGCTGTAGGTGAA+GGG | + | tig0029335:27717-27736 | None:intergenic | 45.0% | |
| AAAGAACTGGCTGTAGGTGA+AGG | + | tig0029335:27718-27737 | None:intergenic | 45.0% | |
| !! | TCTTGTAGGGGTTGATTTGG+TGG | + | tig0029335:27838-27857 | None:intergenic | 45.0% |
| CATTGACACCTGCTTATGCT+TGG | - | tig0029335:28156-28175 | Msa1441710:intron | 45.0% | |
| TGATCCATCCAAGCATAAGC+AGG | + | tig0029335:28167-28186 | None:intergenic | 45.0% | |
| CCAAACACATGTGACTGATG+CGG | - | tig0029335:28497-28516 | Msa1441710:intron | 45.0% | |
| !! | CTGATGCGGTTACTTGCTAT+TGG | - | tig0029335:28511-28530 | Msa1441710:intron | 45.0% |
| TGGTGTTCCCTAATGCCAAT+AGG | - | tig0029335:28531-28550 | Msa1441710:intron | 45.0% | |
| GGTGTTCCCTAATGCCAATA+GGG | - | tig0029335:28532-28551 | Msa1441710:intron | 45.0% | |
| CACGTTCCCTATTGGCATTA+GGG | + | tig0029335:28541-28560 | None:intergenic | 45.0% | |
| AGCACCATATTGGATGCACA+TGG | + | tig0029335:28706-28725 | None:intergenic | 45.0% | |
| TTGCAGCAGTAGCACCATAT+TGG | + | tig0029335:28716-28735 | None:intergenic | 45.0% | |
| !! | GAGAGTGGGTTAGCAACAAA+TGG | - | tig0029335:28741-28760 | Msa1441710:intron | 45.0% |
| TGAGGGACTGCATCTTGAAA+TGG | + | tig0029335:28797-28816 | None:intergenic | 45.0% | |
| TAGTGTATAGGGCCTGTTGT+CGG | + | tig0029335:29383-29402 | None:intergenic | 45.0% | |
| ACAACAGGCCCTATACACTA+CGG | - | tig0029335:29383-29402 | Msa1441710:intron | 45.0% | |
| GGATGACTCAACCATGATCT+TGG | + | tig0029335:29624-29643 | None:intergenic | 45.0% | |
| TGGTTGAGTCATCCCACAAA+AGG | - | tig0029335:29630-29649 | Msa1441710:intron | 45.0% | |
| GACTAGCACTAGGTAAAGAG+AGG | + | tig0029335:29764-29783 | None:intergenic | 45.0% | |
| !! | CCATTGCTTTGGTGTTTGGT+TGG | + | tig0029335:29937-29956 | None:intergenic | 45.0% |
| CCAACCAAACACCAAAGCAA+TGG | - | tig0029335:29934-29953 | Msa1441710:intron | 45.0% | |
| AATTCCAACCAGCAAAAGCG+CGG | - | tig0029335:30061-30080 | Msa1441710:intron | 45.0% | |
| GTACCCCTGTAAGACTTAGA+TGG | - | tig0029335:30129-30148 | Msa1441710:intron | 45.0% | |
| TGCTCAAGTCAACTAGCAAG+TGG | + | tig0029335:30226-30245 | None:intergenic | 45.0% | |
| AAAGAGGACGTTGAGCTTAG+GGG | - | tig0029335:30312-30331 | Msa1441710:intron | 45.0% | |
| GGGGCTCAAATTCTTCAAGT+AGG | - | tig0029335:30331-30350 | Msa1441710:intron | 45.0% | |
| TTAGTGTGAGAGAAGGAGAG+AGG | - | tig0029335:30383-30402 | Msa1441710:intron | 45.0% | |
| TGTTATCTCTCCACCACATC+CGG | - | tig0029335:26739-26758 | Msa1441710:CDS | 45.0% | |
| ! | GCAGAAGGCAACCTTTTCAT+TGG | + | tig0029335:26791-26810 | None:intergenic | 45.0% |
| !! | CTTTGAAATGAGGGACTTCG+TGG | - | tig0029335:30913-30932 | Msa1441710:intron | 45.0% |
| CATTCATCGACAGAGAAGAG+AGG | - | tig0029335:31141-31160 | Msa1441710:five_prime_UTR | 45.0% | |
| ! | GAGAAGAGAGGCCTATTTTG+AGG | - | tig0029335:31153-31172 | Msa1441710:five_prime_UTR | 45.0% |
| !!! | AATTTTATTAAATATTTGAA+TGG | + | tig0029335:27582-27601 | None:intergenic | 5.0% |
| AGATAGAGGACCAGATGTGG+TGG | + | tig0029335:26752-26771 | None:intergenic | 50.0% | |
| ACCACATCTGGTCCTCTATC+TGG | - | tig0029335:26751-26770 | Msa1441710:CDS | 50.0% | |
| ACCAGATAGAGGACCAGATG+TGG | + | tig0029335:26755-26774 | None:intergenic | 50.0% | |
| !! | GATGAGGTGTTTTGTCCACG+AGG | + | tig0029335:27257-27276 | None:intergenic | 50.0% |
| TGCTTTGTAACCCCAAGCAG+TGG | - | tig0029335:27370-27389 | Msa1441710:intron | 50.0% | |
| GTATCCATCCATCCATAGGG+AGG | - | tig0029335:27424-27443 | Msa1441710:intron | 50.0% | |
| AATTCAGGCCTCCCTATGGA+TGG | + | tig0029335:27435-27454 | None:intergenic | 50.0% | |
| GACACCTGCTTATGCTTGGA+TGG | - | tig0029335:28160-28179 | Msa1441710:intron | 50.0% | |
| CCGCATCAGTCACATGTGTT+TGG | + | tig0029335:28500-28519 | None:intergenic | 50.0% | |
| GCACGTTCCCTATTGGCATT+AGG | + | tig0029335:28542-28561 | None:intergenic | 50.0% | |
| ACTGCTGCAACTTGTGAGAG+TGG | - | tig0029335:28726-28745 | Msa1441710:intron | 50.0% | |
| CTGCTGCAACTTGTGAGAGT+GGG | - | tig0029335:28727-28746 | Msa1441710:intron | 50.0% | |
| GGTGCATTTCTCCAAAGGGT+TGG | - | tig0029335:29357-29376 | Msa1441710:intron | 50.0% | |
| ! | GGAATGCTCTGAGCTACTAG+AGG | + | tig0029335:29743-29762 | None:intergenic | 50.0% |
| !! | AGGGGTACTCACCATGTTCT+TGG | + | tig0029335:30117-30136 | None:intergenic | 50.0% |
| ATGAAGAGGAGACCAGCTAG+AGG | + | tig0029335:30451-30470 | None:intergenic | 50.0% | |
| !! | CTAACCAGGAAAAGCGCTGC+AGG | - | tig0029335:26426-26445 | Msa1441710:exon | 55.0% |
| !! | CTTTGAAACGAGGGACCTCG+TGG | - | tig0029335:27239-27258 | Msa1441710:intron | 55.0% |
| ! | CCTTCCTGCAGCGCTTTTCC+TGG | + | tig0029335:26433-26452 | None:intergenic | 60.0% |
| !! | CCAGGAAAAGCGCTGCAGGA+AGG | - | tig0029335:26430-26449 | Msa1441710:CDS | 60.0% |
| CAGGCCTCCCTATGGATGGA+TGG | + | tig0029335:27431-27450 | None:intergenic | 60.0% | |
| CCTGTTGTCGGCCAACCCTT+TGG | + | tig0029335:29371-29390 | None:intergenic | 60.0% | |
| !! | CCAAAGGGTTGGCCGACAAC+AGG | - | tig0029335:29368-29387 | Msa1441710:intron | 60.0% |
| ! | TCTGCCGCGCTTTTGCTGGT+TGG | + | tig0029335:30068-30087 | None:intergenic | 60.0% |
| ! | CTGTTCTGCCGCGCTTTTGC+TGG | + | tig0029335:30072-30091 | None:intergenic | 60.0% |
| AGCTAGAGGACCGGATGTGG+TGG | + | tig0029335:30437-30456 | None:intergenic | 60.0% | |
| ACCACATCCGGTCCTCTAGC+TGG | - | tig0029335:30436-30455 | Msa1441710:CDS | 60.0% | |
| ACCAGCTAGAGGACCGGATG+TGG | + | tig0029335:30440-30459 | None:intergenic | 60.0% | |
| GAGGAGACCAGCTAGAGGAC+CGG | + | tig0029335:30446-30465 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0029335 | gene | 26028 | 31246 | 26028 | ID=Msa1441710;Name=Msa1441710 |
| tig0029335 | mRNA | 26028 | 31246 | 26028 | ID=Msa1441710-mRNA-1;Parent=Msa1441710;Name=Msa1441710-mRNA-1;_AED=0.23;_eAED=0.23;_QI=152|0.57|0.62|1|0.85|0.75|8|370|404 |
| tig0029335 | exon | 26028 | 26283 | 26028 | ID=Msa1441710-mRNA-1:exon:12997;Parent=Msa1441710-mRNA-1 |
| tig0029335 | exon | 26314 | 26637 | 26314 | ID=Msa1441710-mRNA-1:exon:12996;Parent=Msa1441710-mRNA-1 |
| tig0029335 | exon | 26719 | 26993 | 26719 | ID=Msa1441710-mRNA-1:exon:12995;Parent=Msa1441710-mRNA-1 |
| tig0029335 | exon | 27138 | 27238 | 27138 | ID=Msa1441710-mRNA-1:exon:12994;Parent=Msa1441710-mRNA-1 |
| tig0029335 | exon | 30198 | 30322 | 30198 | ID=Msa1441710-mRNA-1:exon:12993;Parent=Msa1441710-mRNA-1 |
| tig0029335 | exon | 30404 | 30678 | 30404 | ID=Msa1441710-mRNA-1:exon:12992;Parent=Msa1441710-mRNA-1 |
| tig0029335 | exon | 30777 | 30860 | 30777 | ID=Msa1441710-mRNA-1:exon:12991;Parent=Msa1441710-mRNA-1 |
| tig0029335 | exon | 30950 | 31246 | 30950 | ID=Msa1441710-mRNA-1:exon:12990;Parent=Msa1441710-mRNA-1 |
| tig0029335 | five_prime_UTR | 31095 | 31246 | 31095 | ID=Msa1441710-mRNA-1:five_prime_utr;Parent=Msa1441710-mRNA-1 |
| tig0029335 | CDS | 30950 | 31094 | 30950 | ID=Msa1441710-mRNA-1:cds;Parent=Msa1441710-mRNA-1 |
| tig0029335 | CDS | 30777 | 30860 | 30777 | ID=Msa1441710-mRNA-1:cds;Parent=Msa1441710-mRNA-1 |
| tig0029335 | CDS | 30404 | 30678 | 30404 | ID=Msa1441710-mRNA-1:cds;Parent=Msa1441710-mRNA-1 |
| tig0029335 | CDS | 30198 | 30322 | 30198 | ID=Msa1441710-mRNA-1:cds;Parent=Msa1441710-mRNA-1 |
| tig0029335 | CDS | 27138 | 27238 | 27138 | ID=Msa1441710-mRNA-1:cds;Parent=Msa1441710-mRNA-1 |
| tig0029335 | CDS | 26719 | 26993 | 26719 | ID=Msa1441710-mRNA-1:cds;Parent=Msa1441710-mRNA-1 |
| tig0029335 | CDS | 26428 | 26637 | 26428 | ID=Msa1441710-mRNA-1:cds;Parent=Msa1441710-mRNA-1 |
| tig0029335 | three_prime_UTR | 26314 | 26427 | 26314 | ID=Msa1441710-mRNA-1:three_prime_utr;Parent=Msa1441710-mRNA-1 |
| tig0029335 | three_prime_UTR | 26028 | 26283 | 26028 | ID=Msa1441710-mRNA-1:three_prime_utr;Parent=Msa1441710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
