Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416180 | sp|Q9FMW4|GEML8_ARATH | 58.904 | 146 | 60 | 0 | 245 | 390 | 69 | 214 | 1.48e-57 | 190 |
| Msa1416180 | sp|Q9FMW4|GEML8_ARATH | 47.423 | 194 | 96 | 3 | 19 | 210 | 12 | 201 | 9.28e-55 | 183 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416180 | A0A371GW26 | 59.179 | 414 | 116 | 7 | 3 | 392 | 250 | 634 | 2.00e-157 | 467 |
| Msa1416180 | A0A371GW26 | 59.564 | 413 | 114 | 8 | 2 | 390 | 59 | 442 | 2.49e-152 | 454 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010110 | Msa1416180 | 0.816548 | 5.226099e-52 | -8.615850e-47 |
| Msa0045240 | Msa1416180 | 0.823418 | 1.399938e-53 | -8.615850e-47 |
| Msa0081650 | Msa1416180 | 0.802206 | 6.261571e-49 | -8.615850e-47 |
| Msa0104670 | Msa1416180 | 0.827822 | 1.264963e-54 | -8.615850e-47 |
| Msa0106620 | Msa1416180 | 0.815533 | 8.803994e-52 | -8.615850e-47 |
| Msa0106710 | Msa1416180 | 0.818639 | 1.764583e-52 | -8.615850e-47 |
| Msa0115710 | Msa1416180 | 0.848939 | 4.451102e-60 | -8.615850e-47 |
| Msa0115730 | Msa1416180 | 0.805498 | 1.296661e-49 | -8.615850e-47 |
| Msa1357890 | Msa1416180 | 0.807099 | 5.963598e-50 | -8.615850e-47 |
| Msa1368360 | Msa1416180 | 0.803492 | 3.396726e-49 | -8.615850e-47 |
| Msa1393840 | Msa1416180 | -0.800330 | 1.515960e-48 | -8.615850e-47 |
| Msa1398090 | Msa1416180 | 0.808358 | 3.220733e-50 | -8.615850e-47 |
| Msa1416180 | Msa1441710 | 0.872603 | 2.800759e-67 | -8.615850e-47 |
| Msa1416180 | Msa1447540 | 0.863022 | 3.348650e-64 | -8.615850e-47 |
| Msa0721280 | Msa1416180 | 0.807396 | 5.159742e-50 | -8.615850e-47 |
| Msa0735550 | Msa1416180 | 0.801436 | 9.010509e-49 | -8.615850e-47 |
| Msa0144530 | Msa1416180 | 0.819239 | 1.288913e-52 | -8.615850e-47 |
| Msa0150860 | Msa1416180 | 0.801611 | 8.298421e-49 | -8.615850e-47 |
| Msa0204960 | Msa1416180 | 0.811166 | 8.019780e-51 | -8.615850e-47 |
| Msa1225860 | Msa1416180 | -0.814426 | 1.550059e-51 | -8.615850e-47 |
| Msa1340200 | Msa1416180 | 0.816905 | 4.346499e-52 | -8.615850e-47 |
| Msa0432160 | Msa1416180 | 0.801443 | 8.981922e-49 | -8.615850e-47 |
| Msa0450400 | Msa1416180 | -0.820030 | 8.505999e-53 | -8.615850e-47 |
| Msa0476680 | Msa1416180 | 0.806219 | 9.147797e-50 | -8.615850e-47 |
| Msa1034500 | Msa1416180 | 0.803641 | 3.164685e-49 | -8.615850e-47 |
| Msa1089450 | Msa1416180 | 0.803943 | 2.738258e-49 | -8.615850e-47 |
| Msa0240900 | Msa1416180 | 0.807909 | 4.015136e-50 | -8.615850e-47 |
| Msa0241140 | Msa1416180 | 0.807143 | 5.836971e-50 | -8.615850e-47 |
| Msa0317970 | Msa1416180 | 0.813519 | 2.457244e-51 | -8.615850e-47 |
| Msa0322900 | Msa1416180 | 0.802065 | 6.696429e-49 | -8.615850e-47 |
| Msa0521010 | Msa1416180 | 0.815126 | 1.084580e-51 | -8.615850e-47 |
| Msa0583360 | Msa1416180 | -0.806411 | 8.333225e-50 | -8.615850e-47 |
| Msa0933760 | Msa1416180 | 0.821740 | 3.437862e-53 | -8.615850e-47 |
| Msa0934140 | Msa1416180 | 0.807026 | 6.179115e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416180 | MtrunA17_Chr1g0212171 | 90.909 | 209 | 15 | 1 | 1 | 209 | 1 | 205 | 4.03e-134 | 383 |
| Msa1416180 | MtrunA17_Chr1g0212171 | 85.475 | 179 | 22 | 1 | 218 | 396 | 51 | 225 | 3.90e-107 | 315 |
| Msa1416180 | MtrunA17_Chr1g0212181 | 79.426 | 209 | 36 | 2 | 1 | 209 | 1 | 202 | 7.76e-115 | 334 |
| Msa1416180 | MtrunA17_Chr1g0212181 | 85.484 | 186 | 23 | 1 | 219 | 404 | 49 | 230 | 1.37e-111 | 326 |
| Msa1416180 | MtrunA17_Chr1g0212121 | 76.190 | 210 | 43 | 2 | 1 | 210 | 1 | 203 | 1.67e-112 | 328 |
| Msa1416180 | MtrunA17_Chr1g0212121 | 77.714 | 175 | 35 | 1 | 218 | 392 | 48 | 218 | 9.64e-94 | 280 |
| Msa1416180 | MtrunA17_Chr1g0212091 | 53.521 | 213 | 89 | 5 | 1 | 210 | 1 | 206 | 3.56e-69 | 218 |
| Msa1416180 | MtrunA17_Chr1g0212091 | 58.333 | 168 | 66 | 1 | 226 | 393 | 59 | 222 | 6.03e-66 | 209 |
| Msa1416180 | MtrunA17_Chr1g0162171 | 57.754 | 187 | 65 | 2 | 216 | 392 | 41 | 223 | 1.38e-68 | 216 |
| Msa1416180 | MtrunA17_Chr1g0162171 | 51.389 | 216 | 84 | 4 | 5 | 210 | 4 | 208 | 1.41e-66 | 211 |
| Msa1416180 | MtrunA17_Chr8g0388871 | 46.561 | 189 | 95 | 3 | 206 | 392 | 1 | 185 | 1.25e-50 | 168 |
| Msa1416180 | MtrunA17_Chr8g0388871 | 50.993 | 151 | 69 | 2 | 60 | 209 | 23 | 169 | 2.48e-43 | 149 |
| Msa1416180 | MtrunA17_Chr6g0481891 | 50.000 | 158 | 75 | 1 | 236 | 393 | 47 | 200 | 2.10e-47 | 160 |
| Msa1416180 | MtrunA17_Chr6g0481891 | 42.222 | 180 | 95 | 2 | 30 | 209 | 13 | 183 | 1.42e-40 | 142 |
| Msa1416180 | MtrunA17_Chr1g0212111 | 61.261 | 111 | 43 | 0 | 282 | 392 | 47 | 157 | 4.15e-41 | 143 |
| Msa1416180 | MtrunA17_Chr1g0212111 | 62.500 | 96 | 36 | 0 | 115 | 210 | 47 | 142 | 4.72e-35 | 127 |
| Msa1416180 | MtrunA17_Chr1g0212131 | 83.077 | 65 | 11 | 0 | 329 | 393 | 1 | 65 | 1.51e-32 | 117 |
| Msa1416180 | MtrunA17_Chr1g0212131 | 95.833 | 48 | 2 | 0 | 162 | 209 | 1 | 48 | 1.61e-26 | 101 |
| Msa1416180 | MtrunA17_Chr7g0251801 | 37.838 | 148 | 92 | 0 | 244 | 391 | 129 | 276 | 1.51e-30 | 119 |
| Msa1416180 | MtrunA17_Chr7g0251801 | 34.839 | 155 | 97 | 1 | 56 | 210 | 112 | 262 | 3.88e-28 | 112 |
| Msa1416180 | MtrunA17_Chr8g0367701 | 35.897 | 156 | 95 | 2 | 59 | 214 | 109 | 259 | 7.76e-30 | 116 |
| Msa1416180 | MtrunA17_Chr8g0367701 | 35.616 | 146 | 93 | 1 | 244 | 389 | 123 | 267 | 2.33e-28 | 112 |
| Msa1416180 | MtrunA17_Chr3g0133221 | 35.616 | 146 | 93 | 1 | 244 | 389 | 111 | 255 | 1.82e-29 | 115 |
| Msa1416180 | MtrunA17_Chr3g0133221 | 38.346 | 133 | 81 | 1 | 77 | 209 | 111 | 242 | 7.44e-29 | 113 |
| Msa1416180 | MtrunA17_Chr2g0315771 | 32.967 | 182 | 114 | 3 | 214 | 391 | 50 | 227 | 8.26e-23 | 96.3 |
| Msa1416180 | MtrunA17_Chr2g0315771 | 34.437 | 151 | 94 | 2 | 60 | 209 | 66 | 212 | 3.32e-20 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416180 | AT5G23370.1 | 58.904 | 146 | 60 | 0 | 245 | 390 | 69 | 214 | 1.51e-58 | 190 |
| Msa1416180 | AT5G23370.1 | 47.423 | 194 | 96 | 3 | 19 | 210 | 12 | 201 | 9.43e-56 | 183 |
| Msa1416180 | AT5G08350.1 | 50.515 | 194 | 84 | 3 | 209 | 395 | 30 | 218 | 1.97e-58 | 190 |
| Msa1416180 | AT5G08350.1 | 48.901 | 182 | 88 | 3 | 30 | 210 | 23 | 200 | 2.71e-53 | 177 |
| Msa1416180 | AT5G23350.1 | 57.534 | 146 | 62 | 0 | 245 | 390 | 69 | 214 | 1.03e-56 | 186 |
| Msa1416180 | AT5G23350.1 | 50.588 | 170 | 77 | 2 | 58 | 224 | 53 | 218 | 7.41e-54 | 178 |
| Msa1416180 | AT5G23360.1 | 54.422 | 147 | 67 | 0 | 245 | 391 | 61 | 207 | 2.06e-54 | 179 |
| Msa1416180 | AT5G23360.1 | 48.352 | 182 | 82 | 4 | 30 | 210 | 23 | 193 | 3.55e-51 | 171 |
| Msa1416180 | AT5G13200.1 | 40.136 | 147 | 88 | 0 | 244 | 390 | 115 | 261 | 8.45e-33 | 124 |
| Msa1416180 | AT5G13200.1 | 37.086 | 151 | 91 | 1 | 60 | 210 | 102 | 248 | 4.61e-30 | 117 |
| Msa1416180 | AT4G01600.3 | 35.758 | 165 | 101 | 2 | 50 | 213 | 16 | 176 | 3.46e-30 | 115 |
| Msa1416180 | AT4G01600.3 | 35.976 | 164 | 100 | 2 | 227 | 389 | 26 | 185 | 7.90e-30 | 114 |
| Msa1416180 | AT4G01600.1 | 35.542 | 166 | 102 | 2 | 50 | 214 | 55 | 216 | 6.57e-30 | 115 |
| Msa1416180 | AT4G01600.1 | 35.976 | 164 | 100 | 2 | 227 | 389 | 65 | 224 | 1.48e-29 | 115 |
| Msa1416180 | AT4G01600.2 | 36.735 | 147 | 92 | 1 | 244 | 389 | 73 | 219 | 1.17e-28 | 112 |
| Msa1416180 | AT4G01600.2 | 34.545 | 165 | 98 | 2 | 50 | 213 | 55 | 210 | 3.15e-27 | 108 |
| Msa1416180 | AT2G22475.1 | 35.526 | 152 | 93 | 2 | 59 | 210 | 133 | 279 | 1.98e-28 | 113 |
| Msa1416180 | AT2G22475.1 | 33.113 | 151 | 100 | 1 | 244 | 394 | 147 | 296 | 5.68e-26 | 107 |
| Msa1416180 | AT1G28200.1 | 33.136 | 169 | 109 | 3 | 224 | 389 | 87 | 254 | 3.24e-27 | 109 |
| Msa1416180 | AT1G28200.1 | 33.333 | 150 | 95 | 2 | 60 | 209 | 97 | 241 | 7.12e-26 | 105 |
| Msa1416180 | AT1G28200.2 | 33.136 | 169 | 109 | 3 | 224 | 389 | 87 | 254 | 3.24e-27 | 109 |
| Msa1416180 | AT1G28200.2 | 33.333 | 150 | 95 | 2 | 60 | 209 | 97 | 241 | 7.12e-26 | 105 |
| Msa1416180 | AT5G13200.2 | 39.362 | 94 | 57 | 0 | 244 | 337 | 115 | 208 | 8.62e-17 | 79.0 |
| Msa1416180 | AT5G13200.2 | 35.135 | 111 | 68 | 1 | 60 | 170 | 102 | 208 | 1.18e-16 | 78.6 |
| Msa1416180 | AT2G22475.2 | 31.579 | 114 | 73 | 2 | 59 | 172 | 133 | 241 | 1.93e-12 | 67.4 |
Find 82 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCATGACATAGTTAT+TGG | 0.132924 | tig0024333:+49710 | Msa1416180:CDS |
| TCTAAGTATGTAGTATTTAA+AGG | 0.275399 | tig0024333:-49552 | None:intergenic |
| GTTCAGGACATACCTTATAT+TGG | 0.280926 | tig0024333:-54504 | None:intergenic |
| AAGGGTACTCACCATGTTCT+TGG | 0.303202 | tig0024333:-49993 | None:intergenic |
| AGGGGTACTCACCATGTTCT+TGG | 0.305997 | tig0024333:-54072 | None:intergenic |
| CCCTTCATTGACCTCAAAAT+AGG | 0.349137 | tig0024333:-55119 | None:intergenic |
| ATGAAGGGAGATTATTGTTA+TGG | 0.350767 | tig0024333:+55134 | Msa1416180:three_prime_UTR |
| GAATGAATACTCTGCCAATA+TGG | 0.352484 | tig0024333:-55078 | None:intergenic |
| ACCACATCTGGTCCTCTATC+TGG | 0.375547 | tig0024333:+50269 | Msa1416180:CDS |
| TAGAGGAAGTTATGCTTACT+TGG | 0.381511 | tig0024333:-49595 | None:intergenic |
| AGGGGCTCAAATTCTTCAAA+TGG | 0.390450 | tig0024333:+50163 | Msa1416180:CDS |
| TAAAGAGGACGTTGAGCTTA+GGG | 0.393383 | tig0024333:+54269 | Msa1416180:CDS |
| ACACACTTGATCTTCTTCAA+TGG | 0.403217 | tig0024333:-50479 | None:intergenic |
| AAGATTTGTGTTTGGTTGAA+AGG | 0.405842 | tig0024333:-49658 | None:intergenic |
| TAAAGAGGACATTGAGCTTA+GGG | 0.407061 | tig0024333:+50144 | Msa1416180:CDS |
| CTAAGTATGTAGTATTTAAA+GGG | 0.415500 | tig0024333:-49551 | None:intergenic |
| AATGCGTAGGATCCAATATA+AGG | 0.416880 | tig0024333:+54492 | Msa1416180:CDS |
| ATAAAGAGGACGTTGAGCTT+AGG | 0.430032 | tig0024333:+54268 | Msa1416180:CDS |
| AATGCGTAGGATCCGCTATA+AGG | 0.432925 | tig0024333:+50367 | Msa1416180:CDS |
| TGTTATCTCTCCACCACATC+TGG | 0.435363 | tig0024333:+50257 | Msa1416180:CDS |
| CGAAGATATGCTTTGAAATG+AGG | 0.444217 | tig0024333:+54861 | Msa1416180:three_prime_UTR |
| ATGTTATTATGCTCTAATAG+TGG | 0.463690 | tig0024333:-54788 | None:intergenic |
| TGTTATCTCTCCACCACATC+CGG | 0.474249 | tig0024333:+54382 | Msa1416180:CDS |
| CCTCTTCATCTCCAATGAAA+AGG | 0.477437 | tig0024333:+50295 | Msa1416180:CDS |
| CCTCTTCATCTCCAATGAAA+AGG | 0.477437 | tig0024333:+54420 | Msa1416180:CDS |
| ATAAAGAGGACATTGAGCTT+AGG | 0.479333 | tig0024333:+50143 | Msa1416180:CDS |
| TGATATATAAGATTTGTGTT+TGG | 0.481083 | tig0024333:-49666 | None:intergenic |
| ACCACATCCGGTCCTCTAGC+TGG | 0.484625 | tig0024333:+54394 | Msa1416180:CDS |
| CTTTGAAATGAGGGACTTCG+TGG | 0.487322 | tig0024333:+54871 | Msa1416180:three_prime_UTR |
| GAAAGGACTATAGCAGTAGA+AGG | 0.488048 | tig0024333:-49641 | None:intergenic |
| CTACATACTTAGACTACAAA+GGG | 0.492097 | tig0024333:+49562 | Msa1416180:five_prime_UTR |
| CTTGATCTTCTTCAATGGAA+TGG | 0.496717 | tig0024333:-50474 | None:intergenic |
| GGGGCTCAAATTCTTCAAAT+GGG | 0.501460 | tig0024333:+50164 | Msa1416180:CDS |
| CAGTAGAAGGTGAAGAGGAA+TGG | 0.502728 | tig0024333:-49628 | None:intergenic |
| TGTTAATATAGAGACCATAT+TGG | 0.504609 | tig0024333:+55064 | Msa1416180:three_prime_UTR |
| GACTCTTTGTGAGAGACTAT+CGG | 0.507719 | tig0024333:-49971 | None:intergenic |
| CTAACCAGGAAAAGCGCTGC+AGG | 0.509603 | tig0024333:+49944 | Msa1416180:CDS |
| TATTGTTCTCTCACTGCAGA+AGG | 0.510226 | tig0024333:-50321 | None:intergenic |
| TATTGTTCTCTCACTGCAGA+AGG | 0.510226 | tig0024333:-54446 | None:intergenic |
| CTTGATATTCTTCAGTGGAA+TGG | 0.537049 | tig0024333:-54599 | None:intergenic |
| GAAGATATGCTTTGAAATGA+GGG | 0.540103 | tig0024333:+54862 | Msa1416180:three_prime_UTR |
| TGTTATGGTAGAAAACAAGA+TGG | 0.540307 | tig0024333:+55149 | Msa1416180:three_prime_UTR |
| ATGAAGAGGAGACCAGATAG+AGG | 0.541014 | tig0024333:-50281 | None:intergenic |
| AACTTTCAAATATCTCGAGC+AGG | 0.543455 | tig0024333:+54729 | Msa1416180:CDS |
| ACCAGCTAGAGGACCGGATG+TGG | 0.545746 | tig0024333:-54395 | None:intergenic |
| TTGATATTGACATTGATTAG+TGG | 0.546039 | tig0024333:-49801 | None:intergenic |
| GGGGCTCAAATTCTTCAAGT+AGG | 0.547691 | tig0024333:+54289 | Msa1416180:CDS |
| TATAGCAGTAGAAGGTGAAG+AGG | 0.548176 | tig0024333:-49633 | None:intergenic |
| GAGGAGACCAGCTAGAGGAC+CGG | 0.553573 | tig0024333:-54401 | None:intergenic |
| TTAGTGTGAGAGAAGGAGAG+AGG | 0.554677 | tig0024333:+54341 | Msa1416180:CDS |
| AGCTAGAGGACCGGATGTGG+TGG | 0.559552 | tig0024333:-54392 | None:intergenic |
| ACATATCTAAAACAATAAAG+AGG | 0.563370 | tig0024333:+50129 | Msa1416180:CDS |
| ACATATCTAAAACAATAAAG+AGG | 0.563370 | tig0024333:+54254 | Msa1416180:CDS |
| ACTACATACTTAGACTACAA+AGG | 0.565243 | tig0024333:+49561 | Msa1416180:five_prime_UTR |
| ATGGTTCATTCATATAGTAT+CGG | 0.565704 | tig0024333:+54947 | Msa1416180:intron |
| ATAAAAGTCTTCAATCAGAA+AGG | 0.566655 | tig0024333:+50341 | Msa1416180:CDS |
| ATAAAAGTCTTCAATCAGAA+AGG | 0.566655 | tig0024333:+54466 | Msa1416180:CDS |
| AGGTAGAGCAAATTCTAACC+AGG | 0.586749 | tig0024333:+49930 | Msa1416180:intron |
| ATATTAACAGTCACTGCTTG+CGG | 0.587455 | tig0024333:-55050 | None:intergenic |
| TTAGTGTGACAGAAGGGGAA+AGG | 0.588982 | tig0024333:+50216 | Msa1416180:CDS |
| AATTCTTCAAATGGGTGGAG+TGG | 0.590708 | tig0024333:+50172 | Msa1416180:CDS |
| CCAGGAAAAGCGCTGCAGGA+AGG | 0.598245 | tig0024333:+49948 | Msa1416180:CDS |
| GCTCAAATTCTTCAAGTAGG+TGG | 0.599531 | tig0024333:+54292 | Msa1416180:CDS |
| ATATGATCAAATTCAACAGT+CGG | 0.601025 | tig0024333:+49754 | Msa1416180:CDS |
| ATCAGAAAGGTCAAATGCGT+AGG | 0.606952 | tig0024333:+50354 | Msa1416180:CDS |
| ATCAGAAAGGTCAAATGCGT+AGG | 0.606952 | tig0024333:+54479 | Msa1416180:CDS |
| AATTCTTCAAGTAGGTGGAG+TGG | 0.608118 | tig0024333:+54297 | Msa1416180:CDS |
| GCTCAAATTCTTCAAATGGG+TGG | 0.612320 | tig0024333:+50167 | Msa1416180:CDS |
| TGTTGATGAAAGAGATCACT+CGG | 0.612401 | tig0024333:+55006 | Msa1416180:three_prime_UTR |
| AGATAGAGGACCAGATGTGG+TGG | 0.622202 | tig0024333:-50267 | None:intergenic |
| ACACACTTGATATTCTTCAG+TGG | 0.629365 | tig0024333:-54604 | None:intergenic |
| ACCAGATAGAGGACCAGATG+TGG | 0.629958 | tig0024333:-50270 | None:intergenic |
| ATATGTTGCTGAGATGATTG+TGG | 0.633252 | tig0024333:-49735 | None:intergenic |
| AAAGAGGACGTTGAGCTTAG+GGG | 0.634036 | tig0024333:+54270 | Msa1416180:CDS |
| TCACAAAGAGTCCAAGAACA+TGG | 0.635074 | tig0024333:+49982 | Msa1416180:CDS |
| TGAAGAAGATCAAGTGTGTG+AGG | 0.640170 | tig0024333:+50483 | Msa1416180:CDS |
| AATTCCAACCAGCAAAAGCG+CGG | 0.640219 | tig0024333:+54019 | Msa1416180:CDS |
| ATGAAGAGGAGACCAGCTAG+AGG | 0.648963 | tig0024333:-54406 | None:intergenic |
| ACACAAAGAGTCCAAGAACA+TGG | 0.649976 | tig0024333:+54061 | Msa1416180:CDS |
| AAAGAGGACATTGAGCTTAG+GGG | 0.650107 | tig0024333:+50145 | Msa1416180:CDS |
| GTTCACGACTTACCTTATAG+CGG | 0.664347 | tig0024333:-50379 | None:intergenic |
| CATTCATCGACAGAGAAGAG+AGG | 0.697110 | tig0024333:+55096 | Msa1416180:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAAGTTTTTTTATATTTT+AGG | - | tig0024333:54717-54736 | None:intergenic | 10.0% |
| !!! | TGAATTTTAAATTCAATGAA+GGG | + | tig0024333:50975-50994 | Msa1416180:intron | 15.0% |
| !!! | TGACTATCAAAATTTAAAAT+TGG | - | tig0024333:51449-51468 | None:intergenic | 15.0% |
| !! | ATATGAGTTACTATAAATAT+AGG | + | tig0024333:51699-51718 | Msa1416180:intron | 15.0% |
| !!! | TTCATCATTTACTTTATTTT+TGG | + | tig0024333:53254-53273 | Msa1416180:intron | 15.0% |
| !!! | AAGATAATATTTTGACATAA+TGG | - | tig0024333:53504-53523 | None:intergenic | 15.0% |
| !! | CTAAGTATGTAGTATTTAAA+GGG | - | tig0024333:49554-49573 | None:intergenic | 20.0% |
| !! | TCTAAGTATGTAGTATTTAA+AGG | - | tig0024333:49555-49574 | None:intergenic | 20.0% |
| !! | TGATATATAAGATTTGTGTT+TGG | - | tig0024333:49669-49688 | None:intergenic | 20.0% |
| !!! | ATAAAGTTATACTTTTGCAT+TGG | - | tig0024333:49835-49854 | None:intergenic | 20.0% |
| !! | AATTAGATACAAAAGGAAAA+TGG | - | tig0024333:50066-50085 | None:intergenic | 20.0% |
| !! | TAAAGAGAATTAGATACAAA+AGG | - | tig0024333:50073-50092 | None:intergenic | 20.0% |
| !!! | ACATATCTAAAACAATAAAG+AGG | + | tig0024333:50129-50148 | Msa1416180:CDS | 20.0% |
| !! | ACATAACAAATATTGGATTA+GGG | - | tig0024333:50446-50465 | None:intergenic | 20.0% |
| !! | TACATAACAAATATTGGATT+AGG | - | tig0024333:50447-50466 | None:intergenic | 20.0% |
| !!! | CTTCATTGAATTTAAAATTC+AGG | - | tig0024333:50976-50995 | None:intergenic | 20.0% |
| !!! | CTGAATTTTAAATTCAATGA+AGG | + | tig0024333:50974-50993 | Msa1416180:intron | 20.0% |
| !! | ATTATTGTTATGGTTGAAAA+AGG | + | tig0024333:51000-51019 | Msa1416180:intron | 20.0% |
| !! | TAATCGACACAATTATTTAA+AGG | - | tig0024333:51184-51203 | None:intergenic | 20.0% |
| !! | TCTATATGTTATGTATAAGT+AGG | - | tig0024333:52218-52237 | None:intergenic | 20.0% |
| !! | AAGAAAAACTGAAAAAGTAA+AGG | + | tig0024333:52258-52277 | Msa1416180:intron | 20.0% |
| !!! | CTTTGTTAGTTACTTTAATT+TGG | + | tig0024333:52497-52516 | Msa1416180:intron | 20.0% |
| !! | TTACTAATTACTCACTTTAT+AGG | - | tig0024333:52831-52850 | None:intergenic | 20.0% |
| !! | TAGTAAAGTGAGAAAATTAA+AGG | + | tig0024333:52845-52864 | Msa1416180:intron | 20.0% |
| !!! | ATCATTGATTTGTTTATCAA+CGG | + | tig0024333:52917-52936 | Msa1416180:intron | 20.0% |
| !! | TAAAATTGAAATCCTAGAAT+AGG | - | tig0024333:53417-53436 | None:intergenic | 20.0% |
| !! | TATTTAAAAGGATGAAAAGT+AGG | - | tig0024333:53622-53641 | None:intergenic | 20.0% |
| !!! | CTAATTTCATTAAGTATTGA+TGG | + | tig0024333:53957-53976 | Msa1416180:intron | 20.0% |
| !! | CATAAATTGTACCATATTAT+TGG | - | tig0024333:54117-54136 | None:intergenic | 20.0% |
| !!! | ACATATCTAAAACAATAAAG+AGG | + | tig0024333:50129-50148 | Msa1416180:CDS | 20.0% |
| !!! | TATATGTACTTATTTAGTTC+AGG | - | tig0024333:54523-54542 | None:intergenic | 20.0% |
| !! | ACATAACAAATATTGGATTA+GGG | - | tig0024333:50446-50465 | None:intergenic | 20.0% |
| ! | ATATGATCAAATTCAACAGT+CGG | + | tig0024333:49754-49773 | Msa1416180:CDS | 25.0% |
| !! | TTGATATTGACATTGATTAG+TGG | - | tig0024333:49804-49823 | None:intergenic | 25.0% |
| ! | TGAAATTAGATTCTTGTAAC+AGG | - | tig0024333:49861-49880 | None:intergenic | 25.0% |
| !!! | TTCATCTAATCAAGTATTGA+TGG | + | tig0024333:49877-49896 | Msa1416180:intron | 25.0% |
| ! | ATAAAAGTCTTCAATCAGAA+AGG | + | tig0024333:50341-50360 | Msa1416180:CDS | 25.0% |
| !!! | ATCCAATATTTGTTATGTAC+AGG | + | tig0024333:50448-50467 | Msa1416180:intron | 25.0% |
| ! | AACCTGTACATAACAAATAT+TGG | - | tig0024333:50453-50472 | None:intergenic | 25.0% |
| !! | ATGTTTATGTACTTTTGTGT+TGG | - | tig0024333:50530-50549 | None:intergenic | 25.0% |
| !! | TGAAAGTTTTCTGATACTTT+AGG | - | tig0024333:50592-50611 | None:intergenic | 25.0% |
| ! | TTCTTTATGTTATGCTCTAA+GGG | - | tig0024333:50669-50688 | None:intergenic | 25.0% |
| ! | ATTCTTTATGTTATGCTCTA+AGG | - | tig0024333:50670-50689 | None:intergenic | 25.0% |
| !! | CAACATATTGTTGATAAAGT+TGG | + | tig0024333:50841-50860 | Msa1416180:intron | 25.0% |
| ! | GCTTATTTAAACTAACTGAT+TGG | - | tig0024333:51162-51181 | None:intergenic | 25.0% |
| ! | TAAAAAAGTAAGAATCCTTC+AGG | - | tig0024333:51279-51298 | None:intergenic | 25.0% |
| !!! | AAGGATTCTTACTTTTTTAG+TGG | + | tig0024333:51280-51299 | Msa1416180:intron | 25.0% |
| !! | GAATTGATTCATGACATATT+AGG | + | tig0024333:51792-51811 | Msa1416180:intron | 25.0% |
| ! | TAATTAAGCATCAAAGTGTA+TGG | - | tig0024333:51943-51962 | None:intergenic | 25.0% |
| ! | CAAGGTAAGAAAAAGTAAAT+AGG | + | tig0024333:52165-52184 | Msa1416180:intron | 25.0% |
| ! | TATAAGTAGGATGTAGTATA+TGG | - | tig0024333:52205-52224 | None:intergenic | 25.0% |
| ! | AAAACTGAAAAAGTAAAGGA+AGG | + | tig0024333:52262-52281 | Msa1416180:intron | 25.0% |
| ! | TTTGTTCTACTACTATATAC+CGG | - | tig0024333:52353-52372 | None:intergenic | 25.0% |
| ! | TAGTAGAACAAAATCAAAAG+TGG | + | tig0024333:52361-52380 | Msa1416180:intron | 25.0% |
| ! | AAATCAAAAGTGGTAGTTAA+TGG | + | tig0024333:52371-52390 | Msa1416180:intron | 25.0% |
| ! | AGCATTTCAATCATATATCT+TGG | + | tig0024333:53091-53110 | Msa1416180:intron | 25.0% |
| ! | AGATAGTAAAAATGAAGGTA+GGG | + | tig0024333:53114-53133 | Msa1416180:intron | 25.0% |
| ! | AGAATTCTCTAAATTCTCTT+GGG | - | tig0024333:53172-53191 | None:intergenic | 25.0% |
| ! | TAGAATTCTCTAAATTCTCT+TGG | - | tig0024333:53173-53192 | None:intergenic | 25.0% |
| !!! | TAGAATAGGTTTGTTTTTAG+AGG | - | tig0024333:53403-53422 | None:intergenic | 25.0% |
| ! | TCTAAAAACAAACCTATTCT+AGG | + | tig0024333:53402-53421 | Msa1416180:intron | 25.0% |
| ! | AGCATGTTGAATGATTAATA+AGG | - | tig0024333:53763-53782 | None:intergenic | 25.0% |
| !! | ATGTTCATGATTCTTTTAAC+AGG | - | tig0024333:53932-53951 | None:intergenic | 25.0% |
| ! | ATATAGATACCACATACAAA+AGG | - | tig0024333:54151-54170 | None:intergenic | 25.0% |
| ! | ATAAAAGTCTTCAATCAGAA+AGG | + | tig0024333:50341-50360 | Msa1416180:CDS | 25.0% |
| ! | CACATAACAAATATTGGATT+AGG | - | tig0024333:54572-54591 | None:intergenic | 25.0% |
| !! | ATGTTTATGTACTTTTGTGT+TGG | - | tig0024333:50530-50549 | None:intergenic | 25.0% |
| ! | ATGTTATTATGCTCTAATAG+TGG | - | tig0024333:54791-54810 | None:intergenic | 25.0% |
| ! | ATGGTTCATTCATATAGTAT+CGG | + | tig0024333:54947-54966 | Msa1416180:intron | 25.0% |
| ! | TGTTAATATAGAGACCATAT+TGG | + | tig0024333:55064-55083 | Msa1416180:three_prime_UTR | 25.0% |
| ACTACATACTTAGACTACAA+AGG | + | tig0024333:49561-49580 | Msa1416180:five_prime_UTR | 30.0% | |
| CTACATACTTAGACTACAAA+GGG | + | tig0024333:49562-49581 | Msa1416180:five_prime_UTR | 30.0% | |
| AAGATTTGTGTTTGGTTGAA+AGG | - | tig0024333:49661-49680 | None:intergenic | 30.0% | |
| CTTCTTCATGACATAGTTAT+TGG | + | tig0024333:49710-49729 | Msa1416180:CDS | 30.0% | |
| !! | TATACTTTTGCATTGGTGTT+TGG | - | tig0024333:49828-49847 | None:intergenic | 30.0% |
| ATAATGTGCTTCAATGTTTC+AGG | + | tig0024333:49910-49929 | Msa1416180:intron | 30.0% | |
| GTGAAAAATTTCAGTGAGAT+CGG | + | tig0024333:50100-50119 | Msa1416180:intron | 30.0% | |
| TGAAAAATTTCAGTGAGATC+GGG | + | tig0024333:50101-50120 | Msa1416180:intron | 30.0% | |
| !!! | AGTATTTTAGTGTGACAGAA+GGG | + | tig0024333:50210-50229 | Msa1416180:CDS | 30.0% |
| !!! | AATTTTGACTTCTGGCTTAT+GGG | + | tig0024333:50563-50582 | Msa1416180:CDS | 30.0% |
| AACTTTCAAATATATCGAGC+AGG | + | tig0024333:50604-50623 | Msa1416180:intron | 30.0% | |
| ! | AAAACACCTCATCATAGTTT+TGG | + | tig0024333:50782-50801 | Msa1416180:intron | 30.0% |
| ATGAAGGGAGATTATTGTTA+TGG | + | tig0024333:50990-51009 | Msa1416180:intron | 30.0% | |
| TTGTTATGGTTGAAAAAGGA+TGG | + | tig0024333:51004-51023 | Msa1416180:intron | 30.0% | |
| !!! | TGTGTCGATTATTTCTTTTG+TGG | + | tig0024333:51193-51212 | Msa1416180:intron | 30.0% |
| GTTTCTTAATGCAAAAGAAC+TGG | - | tig0024333:51257-51276 | None:intergenic | 30.0% | |
| ! | TTTTGCATTAAGAAACCTGA+AGG | + | tig0024333:51261-51280 | Msa1416180:intron | 30.0% |
| ATATGATGAGTAACGTTACA+TGG | - | tig0024333:51853-51872 | None:intergenic | 30.0% | |
| ATCATATAGTATGCTAGACT+AGG | + | tig0024333:51866-51885 | Msa1416180:intron | 30.0% | |
| AATTCGCAACAAGAGTTATA+TGG | + | tig0024333:51988-52007 | Msa1416180:intron | 30.0% | |
| AAAGATTAGCATAAGTTAGC+AGG | - | tig0024333:52051-52070 | None:intergenic | 30.0% | |
| !!! | TTTCTGAGATTTTTCAATCC+CGG | + | tig0024333:52331-52350 | Msa1416180:intron | 30.0% |
| TTGTTCTACTACTATATACC+GGG | - | tig0024333:52352-52371 | None:intergenic | 30.0% | |
| AAATTAAGAGATTGAGCACA+TGG | + | tig0024333:52569-52588 | Msa1416180:intron | 30.0% | |
| !!! | TAAGCTGAAGTTTTGTTAAC+TGG | - | tig0024333:52772-52791 | None:intergenic | 30.0% |
| CCTAGAGTATGAATGATATT+TGG | - | tig0024333:52800-52819 | None:intergenic | 30.0% | |
| CCAAATATCATTCATACTCT+AGG | + | tig0024333:52797-52816 | Msa1416180:intron | 30.0% | |
| CTTGGAGATAGTAAAAATGA+AGG | + | tig0024333:53109-53128 | Msa1416180:intron | 30.0% | |
| GAGATAGTAAAAATGAAGGT+AGG | + | tig0024333:53113-53132 | Msa1416180:intron | 30.0% | |
| GAATTCTCTAAATTCTCTTG+GGG | - | tig0024333:53171-53190 | None:intergenic | 30.0% | |
| TTTGGAAAGTAGGCATTATT+AGG | - | tig0024333:53288-53307 | None:intergenic | 30.0% | |
| ATAATGCCTACTTTCCAAAA+TGG | + | tig0024333:53289-53308 | Msa1416180:intron | 30.0% | |
| CTTTCAGAAAAAGATGGTAA+AGG | - | tig0024333:53469-53488 | None:intergenic | 30.0% | |
| !!! | TTTTGACATAATGGACTGTT+TGG | - | tig0024333:53495-53514 | None:intergenic | 30.0% |
| TATTACATCAACCAAGATCA+TGG | + | tig0024333:53562-53581 | Msa1416180:intron | 30.0% | |
| CTAAGGAGGTAGTATTTAAA+AGG | - | tig0024333:53634-53653 | None:intergenic | 30.0% | |
| TGAAACTGATGATACATGAT+TGG | - | tig0024333:53820-53839 | None:intergenic | 30.0% | |
| TGGATATTGAATTTGACAAG+AGG | - | tig0024333:53875-53894 | None:intergenic | 30.0% | |
| ! | ACAAAGTTTTACCTTTGCTT+TGG | - | tig0024333:53906-53925 | None:intergenic | 30.0% |
| ! | TAGATGGGTTTCCAATAATA+TGG | + | tig0024333:54103-54122 | Msa1416180:intron | 30.0% |
| ! | AACCATTTTCCTTTTGTATG+TGG | + | tig0024333:54139-54158 | Msa1416180:intron | 30.0% |
| TACCACATACAAAAGGAAAA+TGG | - | tig0024333:54144-54163 | None:intergenic | 30.0% | |
| TGAAAAATTTCAGTGAGACT+CGG | + | tig0024333:54226-54245 | Msa1416180:intron | 30.0% | |
| !! | ATCCAATATTTGTTATGTGC+AGG | + | tig0024333:54573-54592 | Msa1416180:intron | 30.0% |
| !!! | GATTTTGATTTCTGGCTTAT+GGG | + | tig0024333:54688-54707 | Msa1416180:CDS | 30.0% |
| !! | GAAGATATGCTTTGAAATGA+GGG | + | tig0024333:54862-54881 | Msa1416180:three_prime_UTR | 30.0% |
| ! | TGTGCATCTATTTTCATCTT+GGG | - | tig0024333:54928-54947 | None:intergenic | 30.0% |
| ! | ATGTGCATCTATTTTCATCT+TGG | - | tig0024333:54929-54948 | None:intergenic | 30.0% |
| AAGATGAAAATAGATGCACA+TGG | + | tig0024333:54928-54947 | Msa1416180:intron | 30.0% | |
| ATGAAGGGAGATTATTGTTA+TGG | + | tig0024333:50990-51009 | Msa1416180:intron | 30.0% | |
| TGTTATGGTAGAAAACAAGA+TGG | + | tig0024333:55149-55168 | Msa1416180:three_prime_UTR | 30.0% | |
| TAGAGGAAGTTATGCTTACT+TGG | - | tig0024333:49598-49617 | None:intergenic | 35.0% | |
| ATATGTTGCTGAGATGATTG+TGG | - | tig0024333:49738-49757 | None:intergenic | 35.0% | |
| ATAAAGAGGACATTGAGCTT+AGG | + | tig0024333:50143-50162 | Msa1416180:CDS | 35.0% | |
| TAAAGAGGACATTGAGCTTA+GGG | + | tig0024333:50144-50163 | Msa1416180:CDS | 35.0% | |
| !!! | CAGTATTTTAGTGTGACAGA+AGG | + | tig0024333:50209-50228 | Msa1416180:CDS | 35.0% |
| !!! | GTATTTTAGTGTGACAGAAG+GGG | + | tig0024333:50211-50230 | Msa1416180:CDS | 35.0% |
| CTTGATCTTCTTCAATGGAA+TGG | - | tig0024333:50477-50496 | None:intergenic | 35.0% | |
| ACACACTTGATCTTCTTCAA+TGG | - | tig0024333:50482-50501 | None:intergenic | 35.0% | |
| !!! | CAATTTTGACTTCTGGCTTA+TGG | + | tig0024333:50562-50581 | Msa1416180:CDS | 35.0% |
| !! | TTTATGTTATGCTCTAAGGG+TGG | - | tig0024333:50666-50685 | None:intergenic | 35.0% |
| !! | TGAAGATATGCTTTGAAACG+AGG | + | tig0024333:50747-50766 | Msa1416180:intron | 35.0% |
| !! | GAAGATATGCTTTGAAACGA+GGG | + | tig0024333:50748-50767 | Msa1416180:intron | 35.0% |
| ATGAAGCCAAAACTATGATG+AGG | - | tig0024333:50791-50810 | None:intergenic | 35.0% | |
| TGGCTTCATTGATATTAGCT+CGG | + | tig0024333:50802-50821 | Msa1416180:intron | 35.0% | |
| TATTAGCTCGGATGTAAACT+TGG | + | tig0024333:50814-50833 | Msa1416180:intron | 35.0% | |
| ! | TGGTAATGCAAGAGATCATT+TGG | + | tig0024333:50861-50880 | Msa1416180:intron | 35.0% |
| TATGGTTGAAAAAGGATGGA+AGG | + | tig0024333:51008-51027 | Msa1416180:intron | 35.0% | |
| !! | TTTTCTTGTAGGGGTTGATT+TGG | - | tig0024333:51367-51386 | None:intergenic | 35.0% |
| ! | TTGCACCATGTTTTCTTGTA+GGG | - | tig0024333:51377-51396 | None:intergenic | 35.0% |
| ! | CTGTTTTGTAACCTAGTACA+AGG | - | tig0024333:51412-51431 | None:intergenic | 35.0% |
| CTTGTACTAGGTTACAAAAC+AGG | + | tig0024333:51410-51429 | Msa1416180:intron | 35.0% | |
| CTGAAAAGTGAATTGTGTTG+TGG | + | tig0024333:52023-52042 | Msa1416180:intron | 35.0% | |
| !! | ATCATCAAAGCTTTTTGAGC+TGG | + | tig0024333:52103-52122 | Msa1416180:intron | 35.0% |
| ATCGCAAGGCAATTTAATGA+AGG | - | tig0024333:52144-52163 | None:intergenic | 35.0% | |
| TTAAATTGCCTTGCGATACA+AGG | + | tig0024333:52147-52166 | Msa1416180:intron | 35.0% | |
| ! | TTTTCTTACCTTGTATCGCA+AGG | - | tig0024333:52158-52177 | None:intergenic | 35.0% |
| AAAGTAAAGGAAGGTGAATG+AGG | + | tig0024333:52271-52290 | Msa1416180:intron | 35.0% | |
| GTCAAGTTTGTGAAAGTTCA+AGG | + | tig0024333:52296-52315 | Msa1416180:intron | 35.0% | |
| GTGGTAGTTAATGGTTCAAA+AGG | + | tig0024333:52380-52399 | Msa1416180:intron | 35.0% | |
| TTCAAAAGGCAGAGTATAGT+AGG | + | tig0024333:52394-52413 | Msa1416180:intron | 35.0% | |
| ! | GAATAATAACTGACTCTGTC+TGG | + | tig0024333:52519-52538 | Msa1416180:intron | 35.0% |
| ! | AGCACATGGTTCTGTATAAA+AGG | + | tig0024333:52583-52602 | Msa1416180:intron | 35.0% |
| ! | GCACATGGTTCTGTATAAAA+GGG | + | tig0024333:52584-52603 | Msa1416180:intron | 35.0% |
| ATATCCATGTGCATCCAATA+TGG | + | tig0024333:52619-52638 | Msa1416180:intron | 35.0% | |
| !! | ACAAATGGGTTACATTCACT+TGG | + | tig0024333:52675-52694 | Msa1416180:intron | 35.0% |
| AGTGAGGATTACTCAATTGA+GGG | - | tig0024333:52733-52752 | None:intergenic | 35.0% | |
| ATCCTCACTCACAAGATAAA+TGG | + | tig0024333:52744-52763 | Msa1416180:intron | 35.0% | |
| ATCCATTTATCTTGTGAGTG+AGG | - | tig0024333:52749-52768 | None:intergenic | 35.0% | |
| TGCACATGCATAACAAATCA+TGG | - | tig0024333:52887-52906 | None:intergenic | 35.0% | |
| ATCAGCATTGCTTTATGAGT+CGG | - | tig0024333:53216-53235 | None:intergenic | 35.0% | |
| !! | AATGCACCATTTTGGAAAGT+AGG | - | tig0024333:53298-53317 | None:intergenic | 35.0% |
| ! | TTTGGAGAAATGCACCATTT+TGG | - | tig0024333:53306-53325 | None:intergenic | 35.0% |
| AAAATGGTGCATTTCTCCAA+AGG | + | tig0024333:53305-53324 | Msa1416180:intron | 35.0% | |
| AAATGGTGCATTTCTCCAAA+GGG | + | tig0024333:53306-53325 | Msa1416180:intron | 35.0% | |
| ACAAGATTCCGTAGTGTATA+GGG | - | tig0024333:53347-53366 | None:intergenic | 35.0% | |
| AACAAGATTCCGTAGTGTAT+AGG | - | tig0024333:53348-53367 | None:intergenic | 35.0% | |
| !! | GTTTTTAGAGGCTTAGAGAA+AGG | - | tig0024333:53391-53410 | None:intergenic | 35.0% |
| ! | TGGTTGCTTTCAGAAAAAGA+TGG | - | tig0024333:53475-53494 | None:intergenic | 35.0% |
| GTAATAAAGACACTACCACA+TGG | - | tig0024333:53548-53567 | None:intergenic | 35.0% | |
| ! | ATCAGTCCTTTTGTGTTCTA+AGG | - | tig0024333:53651-53670 | None:intergenic | 35.0% |
| TAGAGGAAGTTATGTTTGCT+TGG | - | tig0024333:53684-53703 | None:intergenic | 35.0% | |
| TTGTTGAAAAGACTAGCACT+AGG | - | tig0024333:53732-53751 | None:intergenic | 35.0% | |
| AACTAGCTCATGATGAATTG+AGG | - | tig0024333:53788-53807 | None:intergenic | 35.0% | |
| ATTCATCATGAGCTAGTTGT+TGG | + | tig0024333:53790-53809 | Msa1416180:intron | 35.0% | |
| !! | TTTACCTTTGCTTTGGTGTT+TGG | - | tig0024333:53899-53918 | None:intergenic | 35.0% |
| AAACCCATCTAAGTCTTACA+GGG | - | tig0024333:54094-54113 | None:intergenic | 35.0% | |
| !!! | CAGTATTTTAGTGTGAGAGA+AGG | + | tig0024333:54334-54353 | Msa1416180:CDS | 35.0% |
| AATGCGTAGGATCCAATATA+AGG | + | tig0024333:54492-54511 | Msa1416180:CDS | 35.0% | |
| GTTCAGGACATACCTTATAT+TGG | - | tig0024333:54507-54526 | None:intergenic | 35.0% | |
| CACCTGCACATAACAAATAT+TGG | - | tig0024333:54578-54597 | None:intergenic | 35.0% | |
| !! | CAATATTTGTTATGTGCAGG+TGG | + | tig0024333:54576-54595 | Msa1416180:intron | 35.0% |
| CTTGATATTCTTCAGTGGAA+TGG | - | tig0024333:54602-54621 | None:intergenic | 35.0% | |
| ACACACTTGATATTCTTCAG+TGG | - | tig0024333:54607-54626 | None:intergenic | 35.0% | |
| !!! | CAGAAGACGATTTTGATTTC+TGG | + | tig0024333:54680-54699 | Msa1416180:CDS | 35.0% |
| !!! | CGATTTTGATTTCTGGCTTA+TGG | + | tig0024333:54687-54706 | Msa1416180:CDS | 35.0% |
| AACTTTCAAATATCTCGAGC+AGG | + | tig0024333:54729-54748 | Msa1416180:CDS | 35.0% | |
| !! | CGAAGATATGCTTTGAAATG+AGG | + | tig0024333:54861-54880 | Msa1416180:three_prime_UTR | 35.0% |
| ! | TGTTGATGAAAGAGATCACT+CGG | + | tig0024333:55006-55025 | Msa1416180:three_prime_UTR | 35.0% |
| ATATTAACAGTCACTGCTTG+CGG | - | tig0024333:55053-55072 | None:intergenic | 35.0% | |
| GAATGAATACTCTGCCAATA+TGG | - | tig0024333:55081-55100 | None:intergenic | 35.0% | |
| !!! | CCTATTTTGAGGTCAATGAA+GGG | + | tig0024333:55119-55138 | Msa1416180:three_prime_UTR | 35.0% |
| !!! | GGAATGGTTTTAGCTCTTAG+AGG | - | tig0024333:49615-49634 | None:intergenic | 40.0% |
| TATAGCAGTAGAAGGTGAAG+AGG | - | tig0024333:49636-49655 | None:intergenic | 40.0% | |
| GAAAGGACTATAGCAGTAGA+AGG | - | tig0024333:49644-49663 | None:intergenic | 40.0% | |
| AGGTAGAGCAAATTCTAACC+AGG | + | tig0024333:49930-49949 | Msa1416180:intron | 40.0% | |
| GACTCTTTGTGAGAGACTAT+CGG | - | tig0024333:49974-49993 | None:intergenic | 40.0% | |
| TCACAAAGAGTCCAAGAACA+TGG | + | tig0024333:49982-50001 | Msa1416180:CDS | 40.0% | |
| ! | TACCCTTGTAAGACTTGGTT+GGG | + | tig0024333:50009-50028 | Msa1416180:intron | 40.0% |
| AACCCAACCAAGTCTTACAA+GGG | - | tig0024333:50014-50033 | None:intergenic | 40.0% | |
| AAACCCAACCAAGTCTTACA+AGG | - | tig0024333:50015-50034 | None:intergenic | 40.0% | |
| GGTTGGGTTTCAAAGAGATA+TGG | + | tig0024333:50025-50044 | Msa1416180:intron | 40.0% | |
| AAAGAGGACATTGAGCTTAG+GGG | + | tig0024333:50145-50164 | Msa1416180:CDS | 40.0% | |
| AGGGGCTCAAATTCTTCAAA+TGG | + | tig0024333:50163-50182 | Msa1416180:CDS | 40.0% | |
| GGGGCTCAAATTCTTCAAAT+GGG | + | tig0024333:50164-50183 | Msa1416180:CDS | 40.0% | |
| GCTCAAATTCTTCAAATGGG+TGG | + | tig0024333:50167-50186 | Msa1416180:CDS | 40.0% | |
| AATTCTTCAAATGGGTGGAG+TGG | + | tig0024333:50172-50191 | Msa1416180:CDS | 40.0% | |
| ! | CCTTTTCATTGGAGATGAAG+AGG | - | tig0024333:50298-50317 | None:intergenic | 40.0% |
| CCTCTTCATCTCCAATGAAA+AGG | + | tig0024333:50295-50314 | Msa1416180:CDS | 40.0% | |
| TATTGTTCTCTCACTGCAGA+AGG | - | tig0024333:50324-50343 | None:intergenic | 40.0% | |
| ATCAGAAAGGTCAAATGCGT+AGG | + | tig0024333:50354-50373 | Msa1416180:CDS | 40.0% | |
| GTTCACGACTTACCTTATAG+CGG | - | tig0024333:50382-50401 | None:intergenic | 40.0% | |
| TGAAGAAGATCAAGTGTGTG+AGG | + | tig0024333:50483-50502 | Msa1416180:CDS | 40.0% | |
| !!! | CAGTCGACAATTTTGACTTC+TGG | + | tig0024333:50555-50574 | Msa1416180:CDS | 40.0% |
| GTTAATGACAAGGACCATAC+TGG | + | tig0024333:50913-50932 | Msa1416180:intron | 40.0% | |
| ATGGATACCTTCTACCAGTA+TGG | - | tig0024333:50930-50949 | None:intergenic | 40.0% | |
| TTAAAATTCAGGCCTCCCTA+TGG | - | tig0024333:50965-50984 | None:intergenic | 40.0% | |
| AATGCAAAAGAACTGGCTGT+AGG | - | tig0024333:51250-51269 | None:intergenic | 40.0% | |
| TCAACCCCTACAAGAAAACA+TGG | + | tig0024333:51369-51388 | Msa1416180:intron | 40.0% | |
| ! | TGCACCATGTTTTCTTGTAG+GGG | - | tig0024333:51376-51395 | None:intergenic | 40.0% |
| ! | CTTGCACCATGTTTTCTTGT+AGG | - | tig0024333:51378-51397 | None:intergenic | 40.0% |
| ACATGGTGCAAGTCAATTTC+AGG | + | tig0024333:51386-51405 | Msa1416180:intron | 40.0% | |
| ! | TCAATTTCAGGCCTTGTACT+AGG | + | tig0024333:51398-51417 | Msa1416180:intron | 40.0% |
| ATATGTAGCACGTTCCCTAT+TGG | - | tig0024333:52469-52488 | None:intergenic | 40.0% | |
| GGATGCACATGGATATTATG+TGG | - | tig0024333:52615-52634 | None:intergenic | 40.0% | |
| GAGTGAGGATTACTCAATTG+AGG | - | tig0024333:52734-52753 | None:intergenic | 40.0% | |
| CTCTAAATTCTCTTGGGGTA+AGG | - | tig0024333:53166-53185 | None:intergenic | 40.0% | |
| AAGAACTTCAACTTGCCATG+TGG | + | tig0024333:53530-53549 | Msa1416180:intron | 40.0% | |
| ! | GTGAATCTTGAGCCTTTTGT+GGG | - | tig0024333:53597-53616 | None:intergenic | 40.0% |
| ! | AGTGAATCTTGAGCCTTTTG+TGG | - | tig0024333:53598-53617 | None:intergenic | 40.0% |
| CTACCTCCTTAGAACACAAA+AGG | + | tig0024333:53642-53661 | Msa1416180:intron | 40.0% | |
| !!! | AGTCCTTTTGTGTTCTAAGG+AGG | - | tig0024333:53648-53667 | None:intergenic | 40.0% |
| ACACAAAGAGTCCAAGAACA+TGG | + | tig0024333:54061-54080 | Msa1416180:CDS | 40.0% | |
| TACCCCTGTAAGACTTAGAT+GGG | + | tig0024333:54088-54107 | Msa1416180:intron | 40.0% | |
| AACCCATCTAAGTCTTACAG+GGG | - | tig0024333:54093-54112 | None:intergenic | 40.0% | |
| GAAACCCATCTAAGTCTTAC+AGG | - | tig0024333:54095-54114 | None:intergenic | 40.0% | |
| ATAAAGAGGACGTTGAGCTT+AGG | + | tig0024333:54268-54287 | Msa1416180:CDS | 40.0% | |
| TAAAGAGGACGTTGAGCTTA+GGG | + | tig0024333:54269-54288 | Msa1416180:CDS | 40.0% | |
| GCTCAAATTCTTCAAGTAGG+TGG | + | tig0024333:54292-54311 | Msa1416180:CDS | 40.0% | |
| AATTCTTCAAGTAGGTGGAG+TGG | + | tig0024333:54297-54316 | Msa1416180:CDS | 40.0% | |
| ! | CCTTTTCATTGGAGATGAAG+AGG | - | tig0024333:50298-50317 | None:intergenic | 40.0% |
| CCTCTTCATCTCCAATGAAA+AGG | + | tig0024333:50295-50314 | Msa1416180:CDS | 40.0% | |
| TATTGTTCTCTCACTGCAGA+AGG | - | tig0024333:50324-50343 | None:intergenic | 40.0% | |
| ATCAGAAAGGTCAAATGCGT+AGG | + | tig0024333:50354-50373 | Msa1416180:CDS | 40.0% | |
| !!! | GCCTATTTTGAGGTCAATGA+AGG | + | tig0024333:55118-55137 | Msa1416180:three_prime_UTR | 40.0% |
| CCCTTCATTGACCTCAAAAT+AGG | - | tig0024333:55122-55141 | None:intergenic | 40.0% | |
| CAGTAGAAGGTGAAGAGGAA+TGG | - | tig0024333:49631-49650 | None:intergenic | 45.0% | |
| !! | AAGGGTACTCACCATGTTCT+TGG | - | tig0024333:49996-50015 | None:intergenic | 45.0% |
| GTGAGTACCCTTGTAAGACT+TGG | + | tig0024333:50004-50023 | Msa1416180:intron | 45.0% | |
| ! | GTACCCTTGTAAGACTTGGT+TGG | + | tig0024333:50008-50027 | Msa1416180:intron | 45.0% |
| TTAGTGTGACAGAAGGGGAA+AGG | + | tig0024333:50216-50235 | Msa1416180:CDS | 45.0% | |
| TGTTATCTCTCCACCACATC+TGG | + | tig0024333:50257-50276 | Msa1416180:CDS | 45.0% | |
| ATGAAGAGGAGACCAGATAG+AGG | - | tig0024333:50284-50303 | None:intergenic | 45.0% | |
| ! | GCAGAAGGCAACCTTTTCAT+TGG | - | tig0024333:50309-50328 | None:intergenic | 45.0% |
| AATGCGTAGGATCCGCTATA+AGG | + | tig0024333:50367-50386 | Msa1416180:CDS | 45.0% | |
| TCATTAACAGCCACTGCTTG+GGG | - | tig0024333:50901-50920 | None:intergenic | 45.0% | |
| GTCATTAACAGCCACTGCTT+GGG | - | tig0024333:50902-50921 | None:intergenic | 45.0% | |
| TGTCATTAACAGCCACTGCT+TGG | - | tig0024333:50903-50922 | None:intergenic | 45.0% | |
| AGCAGTGGCTGTTAATGACA+AGG | + | tig0024333:50903-50922 | Msa1416180:intron | 45.0% | |
| ACAAGGACCATACTGGTAGA+AGG | + | tig0024333:50920-50939 | Msa1416180:intron | 45.0% | |
| CATCCATCCATCCATCCATA+GGG | + | tig0024333:50947-50966 | Msa1416180:intron | 45.0% | |
| AAGAACTGGCTGTAGGTGAA+GGG | - | tig0024333:51243-51262 | None:intergenic | 45.0% | |
| AAAGAACTGGCTGTAGGTGA+AGG | - | tig0024333:51244-51263 | None:intergenic | 45.0% | |
| !! | TCTTGTAGGGGTTGATTTGG+TGG | - | tig0024333:51364-51383 | None:intergenic | 45.0% |
| CATTGACACCTGCTTATGCT+TGG | + | tig0024333:52076-52095 | Msa1416180:intron | 45.0% | |
| TGATCCATCCAAGCATAAGC+AGG | - | tig0024333:52087-52106 | None:intergenic | 45.0% | |
| TGGTGTTCCCTAATGCCAAT+AGG | + | tig0024333:52451-52470 | Msa1416180:intron | 45.0% | |
| GGTGTTCCCTAATGCCAATA+GGG | + | tig0024333:52452-52471 | Msa1416180:intron | 45.0% | |
| CACGTTCCCTATTGGCATTA+GGG | - | tig0024333:52461-52480 | None:intergenic | 45.0% | |
| AGCACCATATTGGATGCACA+TGG | - | tig0024333:52626-52645 | None:intergenic | 45.0% | |
| TTGCAGCAGTAGCACCATAT+TGG | - | tig0024333:52636-52655 | None:intergenic | 45.0% | |
| TGAGAGTGGGTAGCAACAAA+TGG | + | tig0024333:52660-52679 | Msa1416180:intron | 45.0% | |
| GAGAGTGGGTAGCAACAAAT+GGG | + | tig0024333:52661-52680 | Msa1416180:intron | 45.0% | |
| TGAGGGACTGCATCTTGAAA+TGG | - | tig0024333:52716-52735 | None:intergenic | 45.0% | |
| TAGTGTATAGGGCCTGTTGT+CGG | - | tig0024333:53336-53355 | None:intergenic | 45.0% | |
| ACAACAGGCCCTATACACTA+CGG | + | tig0024333:53336-53355 | Msa1416180:intron | 45.0% | |
| GGATGACTCAACCATGATCT+TGG | - | tig0024333:53576-53595 | None:intergenic | 45.0% | |
| TGGTTGAGTCATCCCACAAA+AGG | + | tig0024333:53582-53601 | Msa1416180:intron | 45.0% | |
| GACTAGCACTAGGTTAAGAG+AGG | - | tig0024333:53722-53741 | None:intergenic | 45.0% | |
| !! | CCTTTGCTTTGGTGTTTGGT+TGG | - | tig0024333:53895-53914 | None:intergenic | 45.0% |
| CCAACCAAACACCAAAGCAA+AGG | + | tig0024333:53892-53911 | Msa1416180:intron | 45.0% | |
| AATTCCAACCAGCAAAAGCG+CGG | + | tig0024333:54019-54038 | Msa1416180:CDS | 45.0% | |
| GTACCCCTGTAAGACTTAGA+TGG | + | tig0024333:54087-54106 | Msa1416180:intron | 45.0% | |
| TGCTCAAGTCAACTAGCAAG+TGG | - | tig0024333:54184-54203 | None:intergenic | 45.0% | |
| AAAGAGGACGTTGAGCTTAG+GGG | + | tig0024333:54270-54289 | Msa1416180:CDS | 45.0% | |
| GGGGCTCAAATTCTTCAAGT+AGG | + | tig0024333:54289-54308 | Msa1416180:CDS | 45.0% | |
| TTAGTGTGAGAGAAGGAGAG+AGG | + | tig0024333:54341-54360 | Msa1416180:CDS | 45.0% | |
| TGTTATCTCTCCACCACATC+CGG | + | tig0024333:50257-50276 | Msa1416180:CDS | 45.0% | |
| ! | GCAGAAGGCAACCTTTTCAT+TGG | - | tig0024333:50309-50328 | None:intergenic | 45.0% |
| !! | CTTTGAAATGAGGGACTTCG+TGG | + | tig0024333:54871-54890 | Msa1416180:three_prime_UTR | 45.0% |
| CATTCATCGACAGAGAAGAG+AGG | + | tig0024333:55096-55115 | Msa1416180:three_prime_UTR | 45.0% | |
| ! | GAGAAGAGAGGCCTATTTTG+AGG | + | tig0024333:55108-55127 | Msa1416180:three_prime_UTR | 45.0% |
| !!! | AATTTTATTAAATATTTGAA+TGG | - | tig0024333:51108-51127 | None:intergenic | 5.0% |
| !! | TAGATTTAATTAATTAATAA+TGG | + | tig0024333:51495-51514 | Msa1416180:intron | 5.0% |
| AGATAGAGGACCAGATGTGG+TGG | - | tig0024333:50270-50289 | None:intergenic | 50.0% | |
| ACCACATCTGGTCCTCTATC+TGG | + | tig0024333:50269-50288 | Msa1416180:CDS | 50.0% | |
| ACCAGATAGAGGACCAGATG+TGG | - | tig0024333:50273-50292 | None:intergenic | 50.0% | |
| !! | GATGAGGTGTTTTGTCCACG+AGG | - | tig0024333:50775-50794 | None:intergenic | 50.0% |
| TGCTTTGTAACCCCAAGCAG+TGG | + | tig0024333:50888-50907 | Msa1416180:intron | 50.0% | |
| CCTATGGATGGATGGATGGA+TGG | - | tig0024333:50949-50968 | None:intergenic | 50.0% | |
| CCATCCATCCATCCATCCAT+AGG | + | tig0024333:50946-50965 | Msa1416180:intron | 50.0% | |
| AATTCAGGCCTCCCTATGGA+TGG | - | tig0024333:50961-50980 | None:intergenic | 50.0% | |
| GACACCTGCTTATGCTTGGA+TGG | + | tig0024333:52080-52099 | Msa1416180:intron | 50.0% | |
| CCAAACACATGTGACTGACG+CGG | + | tig0024333:52417-52436 | Msa1416180:intron | 50.0% | |
| !! | CTGACGCGGTTACTTGCTAT+TGG | + | tig0024333:52431-52450 | Msa1416180:intron | 50.0% |
| GCACGTTCCCTATTGGCATT+AGG | - | tig0024333:52462-52481 | None:intergenic | 50.0% | |
| ACTGCTGCAACTTGTGAGAG+TGG | + | tig0024333:52646-52665 | Msa1416180:intron | 50.0% | |
| CTGCTGCAACTTGTGAGAGT+GGG | + | tig0024333:52647-52666 | Msa1416180:intron | 50.0% | |
| GGTGCATTTCTCCAAAGGGT+TGG | + | tig0024333:53310-53329 | Msa1416180:intron | 50.0% | |
| ! | GGAATGCTCTGAGCTACTAG+AGG | - | tig0024333:53701-53720 | None:intergenic | 50.0% |
| !! | AGGGGTACTCACCATGTTCT+TGG | - | tig0024333:54075-54094 | None:intergenic | 50.0% |
| ATGAAGAGGAGACCAGCTAG+AGG | - | tig0024333:54409-54428 | None:intergenic | 50.0% | |
| !! | CTAACCAGGAAAAGCGCTGC+AGG | + | tig0024333:49944-49963 | Msa1416180:CDS | 55.0% |
| !! | CTTTGAAACGAGGGACCTCG+TGG | + | tig0024333:50757-50776 | Msa1416180:intron | 55.0% |
| CCTCCCTATGGATGGATGGA+TGG | - | tig0024333:50953-50972 | None:intergenic | 55.0% | |
| CCATCCATCCATCCATAGGG+AGG | + | tig0024333:50950-50969 | Msa1416180:intron | 55.0% | |
| CCGCGTCAGTCACATGTGTT+TGG | - | tig0024333:52420-52439 | None:intergenic | 55.0% | |
| ! | CCTTCCTGCAGCGCTTTTCC+TGG | - | tig0024333:49951-49970 | None:intergenic | 60.0% |
| !! | CCAGGAAAAGCGCTGCAGGA+AGG | + | tig0024333:49948-49967 | Msa1416180:CDS | 60.0% |
| CAGGCCTCCCTATGGATGGA+TGG | - | tig0024333:50957-50976 | None:intergenic | 60.0% | |
| CCTGTTGTCGGCCAACCCTT+TGG | - | tig0024333:53324-53343 | None:intergenic | 60.0% | |
| !! | CCAAAGGGTTGGCCGACAAC+AGG | + | tig0024333:53321-53340 | Msa1416180:intron | 60.0% |
| ! | TCTGCCGCGCTTTTGCTGGT+TGG | - | tig0024333:54026-54045 | None:intergenic | 60.0% |
| ! | CTGTTCTGCCGCGCTTTTGC+TGG | - | tig0024333:54030-54049 | None:intergenic | 60.0% |
| AGCTAGAGGACCGGATGTGG+TGG | - | tig0024333:54395-54414 | None:intergenic | 60.0% | |
| ACCACATCCGGTCCTCTAGC+TGG | + | tig0024333:54394-54413 | Msa1416180:CDS | 60.0% | |
| ACCAGCTAGAGGACCGGATG+TGG | - | tig0024333:54398-54417 | None:intergenic | 60.0% | |
| GAGGAGACCAGCTAGAGGAC+CGG | - | tig0024333:54404-54423 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024333 | gene | 49546 | 55201 | 49546 | ID=Msa1416180;Name=Msa1416180 |
| tig0024333 | mRNA | 49546 | 55201 | 49546 | ID=Msa1416180-mRNA-1;Parent=Msa1416180;Name=Msa1416180-mRNA-1;_AED=0.23;_eAED=0.24;_QI=152|0.57|0.62|1|0.85|0.75|8|367|404 |
| tig0024333 | exon | 49546 | 49842 | 49546 | ID=Msa1416180-mRNA-1:exon:22808;Parent=Msa1416180-mRNA-1 |
| tig0024333 | exon | 49932 | 50015 | 49932 | ID=Msa1416180-mRNA-1:exon:22809;Parent=Msa1416180-mRNA-1 |
| tig0024333 | exon | 50114 | 50388 | 50114 | ID=Msa1416180-mRNA-1:exon:22810;Parent=Msa1416180-mRNA-1 |
| tig0024333 | exon | 50470 | 50594 | 50470 | ID=Msa1416180-mRNA-1:exon:22811;Parent=Msa1416180-mRNA-1 |
| tig0024333 | exon | 53994 | 54094 | 53994 | ID=Msa1416180-mRNA-1:exon:22812;Parent=Msa1416180-mRNA-1 |
| tig0024333 | exon | 54239 | 54513 | 54239 | ID=Msa1416180-mRNA-1:exon:22813;Parent=Msa1416180-mRNA-1 |
| tig0024333 | exon | 54595 | 54918 | 54595 | ID=Msa1416180-mRNA-1:exon:22814;Parent=Msa1416180-mRNA-1 |
| tig0024333 | exon | 54949 | 55201 | 54949 | ID=Msa1416180-mRNA-1:exon:22815;Parent=Msa1416180-mRNA-1 |
| tig0024333 | five_prime_UTR | 49546 | 49697 | 49546 | ID=Msa1416180-mRNA-1:five_prime_utr;Parent=Msa1416180-mRNA-1 |
| tig0024333 | CDS | 49698 | 49842 | 49698 | ID=Msa1416180-mRNA-1:cds;Parent=Msa1416180-mRNA-1 |
| tig0024333 | CDS | 49932 | 50015 | 49932 | ID=Msa1416180-mRNA-1:cds;Parent=Msa1416180-mRNA-1 |
| tig0024333 | CDS | 50114 | 50388 | 50114 | ID=Msa1416180-mRNA-1:cds;Parent=Msa1416180-mRNA-1 |
| tig0024333 | CDS | 50470 | 50594 | 50470 | ID=Msa1416180-mRNA-1:cds;Parent=Msa1416180-mRNA-1 |
| tig0024333 | CDS | 53994 | 54094 | 53994 | ID=Msa1416180-mRNA-1:cds;Parent=Msa1416180-mRNA-1 |
| tig0024333 | CDS | 54239 | 54513 | 54239 | ID=Msa1416180-mRNA-1:cds;Parent=Msa1416180-mRNA-1 |
| tig0024333 | CDS | 54595 | 54804 | 54595 | ID=Msa1416180-mRNA-1:cds;Parent=Msa1416180-mRNA-1 |
| tig0024333 | three_prime_UTR | 54805 | 54918 | 54805 | ID=Msa1416180-mRNA-1:three_prime_utr;Parent=Msa1416180-mRNA-1 |
| tig0024333 | three_prime_UTR | 54949 | 55201 | 54949 | ID=Msa1416180-mRNA-1:three_prime_utr;Parent=Msa1416180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
