AlfalfaGEDB | Msa0045360

M. sativa cultivar zhongmu-4 / Msa0045360

KEGG: K02147
GO: GO:0001678 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007015 GO:0007154 GO:0007165 GO:0008064 GO:0008092 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010182 GO:0010255 GO:0010468 GO:0010556 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0019219 GO:0019222 GO:0019725 GO:0022607 GO:0023052 GO:0030029 GO:0030036 GO:0030054 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031090 GO:0031323 GO:0031326 GO:0031333 GO:0032271 GO:0032272 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043242 GO:0043244 GO:0043254 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046686 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051015 GO:0051017 GO:0051128 GO:0051129 GO:0051171 GO:0051252 GO:0051493 GO:0051494 GO:0051693 GO:0051716 GO:0055044 GO:0055082 GO:0060255 GO:0061572 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071840 GO:0071944 GO:0080090 GO:0090066 GO:0097435 GO:0098588 GO:0098805 GO:0110053 GO:1901700 GO:1901701 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02874.26

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0045360	sp\|Q40079\|VATB2_HORVU	95.319	235	11	0	90	324	194	428	9.52e-161	461
Msa0045360	sp\|Q40079\|VATB2_HORVU	83.750	80	13	0	9	88	15	94	7.28e-36	139

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0045110	Msa0045360	0.983130	6.572937e-157	-8.615850e-47
Msa0045130	Msa0045360	0.911635	4.864955e-83	-8.615850e-47
Msa0045170	Msa0045360	0.984107	1.313510e-159	-8.615850e-47
Msa0045360	Msa0045390	0.983758	1.261031e-158	-8.615850e-47
Msa0045360	Msa0045410	0.872504	3.022532e-67	-8.615850e-47
Msa0045360	Msa1085020	0.963578	2.950129e-122	-8.615850e-47
Msa0045360	Msa1432570	0.857596	1.465833e-62	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0045360	MtrunA17_Chr1g0211291	96.170	235	9	0	90	324	200	434	4.13e-163	465
Msa0045360	MtrunA17_Chr1g0211291	86.250	80	11	0	9	88	20	99	7.21e-38	141
Msa0045360	MtrunA17_Chr7g0250051	94.937	237	12	0	88	324	196	432	1.07e-162	464
Msa0045360	MtrunA17_Chr7g0250051	86.250	80	11	0	9	88	19	98	6.21e-38	141
Msa0045360	MtrunA17_Chr4g0015651	29.474	190	131	2	87	274	183	371	4.47e-19	88.2
Msa0045360	MtrunA17_Chr4g0016741	29.474	190	131	2	87	274	183	371	4.47e-19	88.2
Msa0045360	MtrunA17_CPg0492941	29.474	190	131	2	87	274	183	371	4.47e-19	88.2
Msa0045360	MtrunA17_Chr4g0000341	32.075	159	102	2	116	269	303	460	2.99e-18	85.9
Msa0045360	MtrunA17_Chr4g0016371	29.545	220	140	4	118	329	185	397	1.76e-16	80.1
Msa0045360	MtrunA17_CPg0493401	29.545	220	140	4	118	329	224	436	2.33e-16	80.1
Msa0045360	MtrunA17_Chr3g0090971	29.545	220	140	4	118	329	224	436	2.46e-16	80.1
Msa0045360	MtrunA17_Chr7g0229391	29.224	219	140	4	119	329	225	436	1.11e-15	78.2
Msa0045360	MtrunA17_Chr1g0208761	27.236	246	160	5	80	317	246	480	1.12e-15	78.2
Msa0045360	MtrunA17_Chr1g0208751	27.236	246	160	5	80	317	243	477	2.52e-15	77.0
Msa0045360	MtrunA17_MTg0490471	27.604	192	136	2	92	281	198	388	4.01e-15	76.3
Msa0045360	MtrunA17_Chr2g0278821	28.750	160	106	3	134	291	11	164	3.48e-11	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0045360	AT4G38510.1	95.708	233	10	0	92	324	200	432	7.47e-161	459
Msa0045360	AT4G38510.1	85.000	80	12	0	9	88	19	98	2.59e-37	140
Msa0045360	AT4G38510.3	95.708	233	10	0	92	324	200	432	7.47e-161	459
Msa0045360	AT4G38510.3	85.000	80	12	0	9	88	19	98	2.59e-37	140
Msa0045360	AT4G38510.4	95.708	233	10	0	92	324	200	432	7.47e-161	459
Msa0045360	AT4G38510.4	85.000	80	12	0	9	88	19	98	2.59e-37	140
Msa0045360	AT4G38510.2	95.708	233	10	0	92	324	200	432	7.47e-161	459
Msa0045360	AT4G38510.2	85.000	80	12	0	9	88	19	98	2.59e-37	140
Msa0045360	AT4G38510.5	95.708	233	10	0	92	324	207	439	8.11e-161	459
Msa0045360	AT4G38510.5	85.000	80	12	0	9	88	26	105	2.70e-37	140
Msa0045360	AT1G20260.1	95.690	232	10	0	93	324	201	432	6.07e-160	457
Msa0045360	AT1G20260.1	83.750	80	13	0	9	88	18	97	6.64e-37	139
Msa0045360	AT1G76030.1	95.690	232	10	0	93	324	200	431	1.09e-159	456
Msa0045360	AT1G76030.1	83.750	80	13	0	9	88	18	97	7.55e-37	139
Msa0045360	ATCG00120.1	28.947	190	132	2	87	274	183	371	6.22e-19	88.2
Msa0045360	AT1G78900.1	32.075	159	102	2	116	269	302	459	3.27e-18	86.3
Msa0045360	AT1G78900.2	32.075	159	102	2	116	269	302	459	3.27e-18	86.3
Msa0045360	ATCG00480.1	30.000	220	139	4	118	329	224	436	2.47e-17	83.6
Msa0045360	AT5G08670.1	27.935	247	157	6	80	317	243	477	5.83e-16	79.3
Msa0045360	AT5G08690.1	27.935	247	157	6	80	317	243	477	6.27e-16	79.3
Msa0045360	AT5G08680.1	28.629	248	154	7	80	317	246	480	6.41e-16	79.3
Msa0045360	AT2G07698.1	28.125	192	135	2	92	281	468	658	1.41e-15	78.6
Msa0045360	ATMG01190.1	28.125	192	135	2	92	281	198	388	1.60e-15	77.8

Find 133 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATTGACAATCTCTTGATATT+TGG	0.086118	1_1:+77290404	None:intergenic
GCATGGTTAGAATTGGAATT+TGG	0.112862	1_1:+77287540	None:intergenic
ACGGTTGTATCTGGAATTTC+TGG	0.155234	1_1:-77286253	Msa0045360:three_prime_UTR
ATCTTGTAATTTAATTATTT+AGG	0.241526	1_1:-77285736	Msa0045360:three_prime_UTR
TATTTAGGATATTTGTAATA+AGG	0.248801	1_1:-77285721	Msa0045360:three_prime_UTR
TCTTACTACTGCTGAATATC+TGG	0.262357	1_1:-77287991	Msa0045360:CDS
ATATTATTAACGGTTGTATC+TGG	0.266315	1_1:-77286262	Msa0045360:exon
TTGACAATCTCTTGATATTT+GGG	0.268902	1_1:+77290405	None:intergenic
TTTACGACCGTACAGTTTAC+TGG	0.269439	1_1:-77290039	Msa0045360:CDS
TAACAGTTAATGCATTATTT+AGG	0.298010	1_1:+77289871	None:intergenic
CATGGTTAGAATTGGAATTT+GGG	0.316289	1_1:+77287541	None:intergenic
CCAGGATAACCACGTCTTCC+TGG	0.316708	1_1:+77287635	None:intergenic
TCACCACTGCAGAGTGCTAT+TGG	0.329482	1_1:-77286624	Msa0045360:intron
TACTTGTGTTGCACACAGTT+TGG	0.330060	1_1:-77285820	Msa0045360:three_prime_UTR
ACATCTACGGGTTCTTCTTT+CGG	0.330542	1_1:+77285886	None:intergenic
TCATTTGGCATGGTTAGAAT+TGG	0.334129	1_1:+77287533	None:intergenic
TGCGGGTGTCGTAGGCTCCC+TGG	0.338118	1_1:+77286205	None:intergenic
CACCACTGCAGAGTGCTATT+GGG	0.340834	1_1:-77286623	Msa0045360:intron
CAGGTATTTGAAGGTACATC+TGG	0.345618	1_1:-77290075	Msa0045360:CDS
GAGATTGTCAATATTCGTTT+AGG	0.348480	1_1:-77290393	Msa0045360:CDS
CTGTCCCTCCGTAATATATC+TGG	0.348917	1_1:+77287387	None:intergenic
ATTACTTCATTACCATCATT+TGG	0.354095	1_1:+77287518	None:intergenic
CAGCATCTCGGCTGTAAAAC+TGG	0.358949	1_1:+77286094	None:intergenic
CAACGACAGCTTTCGTTGCC+TGG	0.359191	1_1:+77286406	None:intergenic
ATCCATCATAAATATAATAA+AGG	0.361171	1_1:-77285955	Msa0045360:three_prime_UTR
ATGACTGTGTCTGGAGTTAC+CGG	0.376731	1_1:-77290561	Msa0045360:CDS
AGATTACCAAATTAAGGAAA+AGG	0.411767	1_1:+77288639	None:intergenic
GGTCATTCTTGAGAAAGTTA+AGG	0.412036	1_1:-77290532	Msa0045360:intron
TTTGGGATGGTTGGAATTTG+TGG	0.412266	1_1:-77285802	Msa0045360:three_prime_UTR
AACCTTTATTATATTTATGA+TGG	0.413732	1_1:+77285953	None:intergenic
TGGCGAAAAGGCTGTTGTTC+AGG	0.415818	1_1:-77290331	Msa0045360:intron
TTTACGCCCCTCAATTCTTC+CGG	0.416790	1_1:+77287574	None:intergenic
TATTTATTAATAATTGAAAC+AGG	0.417115	1_1:-77285647	Msa0045360:three_prime_UTR
ACTTGTGTTGCACACAGTTT+GGG	0.417897	1_1:-77285819	Msa0045360:three_prime_UTR
AATCAATTGCCCATGACATT+AGG	0.421049	1_1:+77286016	None:intergenic
CTTCATTAATACCCACTTCA+AGG	0.424318	1_1:+77286298	None:intergenic
TTCTTTCGGACTAACTGAAC+AGG	0.425311	1_1:+77285900	None:intergenic
TCTTCCTGGCACCTCTTCTC+TGG	0.425819	1_1:+77287649	None:intergenic
TGAGAGGAAGTCTGTTGCCC+AGG	0.444969	1_1:-77286223	Msa0045360:three_prime_UTR
GATTACCAAATTAAGGAAAA+GGG	0.449091	1_1:+77288640	None:intergenic
AAGCGTGACTTTGAGGAGAA+TGG	0.451660	1_1:-77288680	Msa0045360:CDS
GAAGTACACGAGGGAAAATC+CGG	0.454247	1_1:+77286145	None:intergenic
TAGAGACTGGAATATATTGC+GGG	0.454648	1_1:+77286188	None:intergenic
TGATCTTACCAGATATATTA+CGG	0.458091	1_1:-77287395	Msa0045360:CDS
GTGATGATACGTTCGATTGT+AGG	0.458361	1_1:+77288026	None:intergenic
CCAGGAAGACGTGGTTATCC+TGG	0.466984	1_1:-77287635	Msa0045360:CDS
GTCAATATTCGTTTAGGCGA+TGG	0.473500	1_1:-77290387	Msa0045360:CDS
TGAACATGCCGGAAGAATTG+AGG	0.476429	1_1:-77287582	Msa0045360:CDS
GCGGGTGTCGTAGGCTCCCT+GGG	0.477631	1_1:+77286206	None:intergenic
CTCGAGAACTTGTCCATGCC+GGG	0.477725	1_1:+77290359	None:intergenic
GGACAAGTTCTCGAGATTGA+TGG	0.478592	1_1:-77290351	Msa0045360:CDS
ACTATTGATCAGGTATTTGA+AGG	0.488267	1_1:-77290084	Msa0045360:intron
TGCACACAGTTTGGGATGGT+TGG	0.495421	1_1:-77285811	Msa0045360:three_prime_UTR
ACAGAATACATGACTGTGTC+TGG	0.496594	1_1:-77290570	Msa0045360:CDS
GTAATATATCTGGTAAGATC+AGG	0.498299	1_1:+77287397	None:intergenic
CTGAACAGGCTCAAAATATG+AGG	0.506055	1_1:+77285914	None:intergenic
GCTGCCAGAGAAGAGGTGCC+AGG	0.506143	1_1:-77287653	Msa0045360:CDS
GAACATGCCGGAAGAATTGA+GGG	0.507410	1_1:-77287581	Msa0045360:CDS
TGAAACAAGCAAACATACAC+TGG	0.507667	1_1:+77285770	None:intergenic
CTTTGAGGAGAATGGCTCAA+TGG	0.507722	1_1:-77288672	Msa0045360:CDS
GAATATATTGCGGGTGTCGT+AGG	0.509788	1_1:+77286197	None:intergenic
CTCAAGAATGACCAATGGTC+CGG	0.512187	1_1:+77290542	None:intergenic
TCTCGAGAACTTGTCCATGC+CGG	0.512745	1_1:+77290358	None:intergenic
ATGTTCTTCCATCACTATCT+CGG	0.513623	1_1:-77286756	Msa0045360:CDS
TCCATGCAAGATCTAGAGAC+TGG	0.515422	1_1:+77286175	None:intergenic
TGCCATTGGAAAGGATGTCC+AGG	0.518353	1_1:-77286424	Msa0045360:CDS
TCAATCAGCGCCTAATGTCA+TGG	0.518643	1_1:-77286026	Msa0045360:three_prime_UTR
ATCACTATCTCGGTTGATGA+AGG	0.519694	1_1:-77286746	Msa0045360:intron
ATCTTGCATGGACTTTACTC+CGG	0.519977	1_1:-77286164	Msa0045360:three_prime_UTR
ATTCTAACCATGCCAAATGA+TGG	0.521293	1_1:-77287530	Msa0045360:intron
GTCTGGAGTTACCGGACCAT+TGG	0.521668	1_1:-77290553	Msa0045360:CDS
TATAGGAATCACAACATCTA+CGG	0.526427	1_1:+77285873	None:intergenic
TCTCGAGATTGATGGCGAAA+AGG	0.527436	1_1:-77290343	Msa0045360:CDS
GTAAAACTGGTCAAGAGTCT+TGG	0.529021	1_1:+77286107	None:intergenic
TACAACCGTTAATAATATTG+AGG	0.530534	1_1:+77286267	None:intergenic
GCTGATTGAGCAAGAGACTA+AGG	0.530727	1_1:+77286040	None:intergenic
TGGGGAGGGAATGACTAGAA+AGG	0.531100	1_1:-77286604	Msa0045360:CDS
TTCATTACCATCATTTGGCA+TGG	0.532782	1_1:+77287523	None:intergenic
TGCGGCTATGGGAGTTAACA+TGG	0.532881	1_1:-77288720	Msa0045360:CDS
TAATAAGGATAGTTGTCACT+TGG	0.536391	1_1:-77285706	Msa0045360:three_prime_UTR
CTGTATGCAACTTATGCCAT+TGG	0.536747	1_1:-77286438	Msa0045360:CDS
AGCACTTTCATCTGAGGACC+TGG	0.537514	1_1:-77286376	Msa0045360:CDS
TAGGCAGTTGCATAATAGAC+AGG	0.544818	1_1:-77287353	Msa0045360:intron
TCCAGTCTCTAGATCTTGCA+TGG	0.545696	1_1:-77286176	Msa0045360:three_prime_UTR
ATCATCAATTACCAGCATCT+CGG	0.552362	1_1:+77286082	None:intergenic
AGTGATGGAAGAACATTGAT+TGG	0.552550	1_1:+77286763	None:intergenic
CAATCAGCGCCTAATGTCAT+GGG	0.553748	1_1:-77286025	Msa0045360:three_prime_UTR
AACTGGTCAAGAGTCTTGGC+TGG	0.554684	1_1:+77286111	None:intergenic
GGAAGAATTGAGGGGCGTAA+AGG	0.556865	1_1:-77287572	Msa0045360:CDS
TGCCTGGACATCCTTTCCAA+TGG	0.558387	1_1:+77286422	None:intergenic
GAGAGGAAGTCTGTTGCCCA+GGG	0.561200	1_1:-77286222	Msa0045360:three_prime_UTR
AGAGAAAATTAGTAGATGCC+AGG	0.561602	1_1:+77286358	None:intergenic
ACCACTGCAGAGTGCTATTG+GGG	0.563672	1_1:-77286622	Msa0045360:intron
ATAGGAATCACAACATCTAC+GGG	0.567475	1_1:+77285874	None:intergenic
TAGTGAAATTGTCCTTGAAG+TGG	0.569681	1_1:-77286310	Msa0045360:CDS
CTGCAGAGTGCTATTGGGGA+GGG	0.572458	1_1:-77286618	Msa0045360:intron
GGCGATGGAACTACCCGGCA+TGG	0.573515	1_1:-77290372	Msa0045360:CDS
CTAGAGACTGGAATATATTG+CGG	0.576024	1_1:+77286187	None:intergenic
GCAACAATTTATGAACATGC+CGG	0.577220	1_1:-77287593	Msa0045360:CDS
TCATTCTGATGTGTCCAACC+AGG	0.578586	1_1:-77286580	Msa0045360:intron
CAGGCAACGAAAGCTGTCGT+TGG	0.583789	1_1:-77286405	Msa0045360:CDS
GATAGAACAAATGCGGACTT+AGG	0.587137	1_1:+77285975	None:intergenic
GAATATCTGGCTTATGAATG+TGG	0.590666	1_1:-77287978	Msa0045360:CDS
ACGAACAGATAAATACATCA+AGG	0.595675	1_1:+77285677	None:intergenic
AGTGAAATTGTCCTTGAAGT+GGG	0.600879	1_1:-77286309	Msa0045360:CDS
ATGGAAGAACATTGATTGGT+GGG	0.602705	1_1:+77286767	None:intergenic
GTGTTGCACACAGTTTGGGA+TGG	0.602819	1_1:-77285815	Msa0045360:three_prime_UTR
AGGTATTTGAAGGTACATCT+GGG	0.603787	1_1:-77290074	Msa0045360:CDS
AGGGACAGATATACATCGAT+AGG	0.603945	1_1:-77287372	Msa0045360:CDS
AATTTCTGGACAAGTTTGAG+AGG	0.606081	1_1:-77286239	Msa0045360:three_prime_UTR
TATCTGGTAAGATCAGGAGT+TGG	0.610819	1_1:+77287403	None:intergenic
TTCATCAACCGAGATAGTGA+TGG	0.612897	1_1:+77286748	None:intergenic
AGAAGAAGCACTTTCATCTG+AGG	0.617772	1_1:-77286382	Msa0045360:CDS
TTATGCTGATGCTCTTCGTG+AGG	0.621125	1_1:-77287919	Msa0045360:intron
GGTATCTGCTGCCAGAGAAG+AGG	0.624465	1_1:-77287660	Msa0045360:CDS
GAAGAGGTGCCAGGAAGACG+TGG	0.628045	1_1:-77287644	Msa0045360:CDS
GACCGTACAGTTTACTGGAG+AGG	0.629013	1_1:-77290034	Msa0045360:intron
TACCTCTCCAGTAAACTGTA+CGG	0.633139	1_1:+77290032	None:intergenic
GATGGAAGAACATTGATTGG+TGG	0.633609	1_1:+77286766	None:intergenic
ACTGCAGAGTGCTATTGGGG+AGG	0.635578	1_1:-77286619	Msa0045360:intron
ACTTTCTCAAGAATGACCAA+TGG	0.645136	1_1:+77290537	None:intergenic
GAAACAAGCAAACATACACT+GGG	0.645433	1_1:+77285771	None:intergenic
TGCAACTTATGCCATTGGAA+AGG	0.655175	1_1:-77286433	Msa0045360:CDS
CTTACCAGATATATTACGGA+GGG	0.659583	1_1:-77287391	Msa0045360:CDS
AGATCTGTATACATATAACC+AGG	0.661413	1_1:+77287617	None:intergenic
CAAACAAGAAGAGACCTGGT+TGG	0.666933	1_1:+77286566	None:intergenic
GTTTAGGCGATGGAACTACC+CGG	0.678023	1_1:-77290377	Msa0045360:CDS
TATGATGGATAGAACAAATG+CGG	0.680825	1_1:+77285968	None:intergenic
TCTTACCAGATATATTACGG+AGG	0.728933	1_1:-77287392	Msa0045360:CDS
ATACGATGAAGAAGTACACG+AGG	0.729276	1_1:+77286135	None:intergenic
GCAGTAGTAAGAGCAATACG+AGG	0.737884	1_1:+77288002	None:intergenic
TACGATGAAGAAGTACACGA+GGG	0.742809	1_1:+77286136	None:intergenic
AACATGCCGGAAGAATTGAG+GGG	0.764342	1_1:-77287580	Msa0045360:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTATAATTTTTTTAATAAGG+GGG	+	chr1_1:77288080-77288099	None:intergenic	10.0%
!!	ATCTTGTAATTTAATTATTT+AGG	-	chr1_1:77290477-77290496	Msa0045360:intron	10.0%
!!	TATTTATTAATAATTGAAAC+AGG	-	chr1_1:77290566-77290585	Msa0045360:CDS	10.0%
!!!	TAAACAGCATATATTTTTAT+GGG	+	chr1_1:77286289-77286308	None:intergenic	15.0%
!!!	ATAAACAGCATATATTTTTA+TGG	+	chr1_1:77286290-77286309	None:intergenic	15.0%
!!	ATTTAGTGTTATATTGTATT+GGG	+	chr1_1:77287032-77287051	None:intergenic	15.0%
!!	TATTTAGTGTTATATTGTAT+TGG	+	chr1_1:77287033-77287052	None:intergenic	15.0%
!!!	AAGAAAAGTGTATAAATAAA+GGG	+	chr1_1:77287097-77287116	None:intergenic	15.0%
!!!	TAAGAAAAGTGTATAAATAA+AGG	+	chr1_1:77287098-77287117	None:intergenic	15.0%
!!!	TTTTAAAGATTACCAAATTA+AGG	+	chr1_1:77287583-77287602	None:intergenic	15.0%
!!!	AATTTTCTAAAAACGTTAAA+TGG	-	chr1_1:77287951-77287970	Msa0045360:CDS	15.0%
!!!	TACTTCAATATTTTGTTTAA+TGG	-	chr1_1:77288000-77288019	Msa0045360:CDS	15.0%
!!	GGTTAAGAAATAAAAATTAT+CGG	+	chr1_1:77288114-77288133	None:intergenic	15.0%
!!!	ATTTTGCTTATATTTTGAAA+CGG	-	chr1_1:77289107-77289126	Msa0045360:intron	15.0%
!!	TTATATGTAAACTATCTTAT+TGG	-	chr1_1:77289692-77289711	Msa0045360:intron	15.0%
!!!	ATTTTCCTCAATATTATTAA+CGG	-	chr1_1:77289941-77289960	Msa0045360:intron	15.0%
!!	ATCCATCATAAATATAATAA+AGG	-	chr1_1:77290258-77290277	Msa0045360:intron	15.0%
!!	AACCTTTATTATATTTATGA+TGG	+	chr1_1:77290263-77290282	None:intergenic	15.0%
!!!	TATTTAGGATATTTGTAATA+AGG	-	chr1_1:77290492-77290511	Msa0045360:intron	15.0%
!!	AGTTAAAATTTAGTCACAAA+GGG	+	chr1_1:77285768-77285787	None:intergenic	20.0%
!!	AAGTTAAAATTTAGTCACAA+AGG	+	chr1_1:77285769-77285788	None:intergenic	20.0%
!!!	TTGTGACTAAATTTTAACTT+CGG	-	chr1_1:77285769-77285788	Msa0045360:three_prime_UTR	20.0%
!!	AAACTATAAAATGACGTTAA+AGG	+	chr1_1:77286094-77286113	None:intergenic	20.0%
!!	CTTTATAATAACTATTGATC+AGG	-	chr1_1:77286119-77286138	Msa0045360:three_prime_UTR	20.0%
!!	TAACAGTTAATGCATTATTT+AGG	+	chr1_1:77286345-77286364	None:intergenic	20.0%
!!	TATCTTCTTTATCATTATCT+GGG	+	chr1_1:77286459-77286478	None:intergenic	20.0%
!!	TTATCTTCTTTATCATTATC+TGG	+	chr1_1:77286460-77286479	None:intergenic	20.0%
!!	GAAAAGAAATATTATCAGAT+AGG	-	chr1_1:77286811-77286830	Msa0045360:intron	20.0%
!!	AAATATTATCAGATAGGAAA+GGG	-	chr1_1:77286817-77286836	Msa0045360:intron	20.0%
!!	GTTGTATTGAAAATTGAAAT+GGG	+	chr1_1:77286999-77287018	None:intergenic	20.0%
!!	AGTTGTATTGAAAATTGAAA+TGG	+	chr1_1:77287000-77287019	None:intergenic	20.0%
!!	AAAGTGGAATATATTGTATT+GGG	+	chr1_1:77287073-77287092	None:intergenic	20.0%
!!!	AGAAAAGTGTATAAATAAAG+GGG	+	chr1_1:77287096-77287115	None:intergenic	20.0%
!!	TACTCATATTACATAAAGTA+TGG	+	chr1_1:77287405-77287424	None:intergenic	20.0%
!!	TACTTTATGTAATATGAGTA+AGG	-	chr1_1:77287405-77287424	Msa0045360:CDS	20.0%
!!!	TTTGATTCTTCATTTTTCTT+TGG	-	chr1_1:77287759-77287778	Msa0045360:intron	20.0%
!!!	TTGATTCTTCATTTTTCTTT+GGG	-	chr1_1:77287760-77287779	Msa0045360:intron	20.0%
!!	TAAGAAATAAAAATTATCGG+AGG	+	chr1_1:77288111-77288130	None:intergenic	20.0%
!!!	TTTTCCTAATAAATTACAGT+TGG	+	chr1_1:77288327-77288346	None:intergenic	20.0%
!!!	AGTAAATTTTGCTTACATTT+TGG	+	chr1_1:77289005-77289024	None:intergenic	20.0%
!!!	GTAAGCAAAATTTACTTTTT+AGG	-	chr1_1:77289009-77289028	Msa0045360:intron	20.0%
!!!	ATAAGCAAAATTCACTTTTT+AGG	+	chr1_1:77289098-77289117	None:intergenic	20.0%
!!	ATATAAAAGCAGTTAATTGT+TGG	-	chr1_1:77289159-77289178	Msa0045360:intron	20.0%
!!	ACATATGTTTCTTAATCAAA+AGG	-	chr1_1:77289533-77289552	Msa0045360:intron	20.0%
!!	TAAAAAAAGAAAACTACACA+GGG	+	chr1_1:77289675-77289694	None:intergenic	20.0%
!!	ATAAAAAAAGAAAACTACAC+AGG	+	chr1_1:77289676-77289695	None:intergenic	20.0%
!	TTGACAATCTCTTGATATTT+GGG	+	chr1_1:77285811-77285830	None:intergenic	25.0%
!	ATTGACAATCTCTTGATATT+TGG	+	chr1_1:77285812-77285831	None:intergenic	25.0%
!	AATCTTATTATGCATGCTTA+AGG	+	chr1_1:77285914-77285933	None:intergenic	25.0%
!!	TGGATTTTTCTTATTGATGA+TGG	-	chr1_1:77286784-77286803	Msa0045360:intron	25.0%
!	GAAATATTATCAGATAGGAA+AGG	-	chr1_1:77286816-77286835	Msa0045360:intron	25.0%
!	AATATTATCAGATAGGAAAG+GGG	-	chr1_1:77286818-77286837	Msa0045360:intron	25.0%
!!!	GGACACTTTTTTTTAGAAAA+TGG	+	chr1_1:77286964-77286983	None:intergenic	25.0%
!	GAAAGTGGAATATATTGTAT+TGG	+	chr1_1:77287074-77287093	None:intergenic	25.0%
!	ATAATGATTAATACGTCAGT+AGG	+	chr1_1:77287225-77287244	None:intergenic	25.0%
!	TTTATGTAATATGAGTAAGG+TGG	-	chr1_1:77287408-77287427	Msa0045360:CDS	25.0%
!	TTACAAATCTTGATTTATGC+AGG	-	chr1_1:77287437-77287456	Msa0045360:intron	25.0%
!	TACAAATCTTGATTTATGCA+GGG	-	chr1_1:77287438-77287457	Msa0045360:intron	25.0%
!	GATTACCAAATTAAGGAAAA+GGG	+	chr1_1:77287576-77287595	None:intergenic	25.0%
!	AGATTACCAAATTAAGGAAA+AGG	+	chr1_1:77287577-77287596	None:intergenic	25.0%
!	AACCAAAATTACCAGAATAA+GGG	+	chr1_1:77287632-77287651	None:intergenic	25.0%
!	AAACCAAAATTACCAGAATA+AGG	+	chr1_1:77287633-77287652	None:intergenic	25.0%
!	AATAAATGTCTCATAATGCT+TGG	-	chr1_1:77287712-77287731	Msa0045360:intron	25.0%
!!!	TGATTCTTCATTTTTCTTTG+GGG	-	chr1_1:77287761-77287780	Msa0045360:intron	25.0%
!	ATCAATAGATATATGTGTAG+AGG	-	chr1_1:77287844-77287863	Msa0045360:intron	25.0%
!!!	ATACTAGTTCTACATTAAGA+TGG	+	chr1_1:77287878-77287897	None:intergenic	25.0%
!	CTTAATGTAGAACTAGTATT+TGG	-	chr1_1:77287879-77287898	Msa0045360:intron	25.0%
!	TGTACCAACTGTAATTTATT+AGG	-	chr1_1:77288320-77288339	Msa0045360:intron	25.0%
!	TAAAGAAAAATACAGGAGAA+TGG	+	chr1_1:77288399-77288418	None:intergenic	25.0%
!!	AATCCTCTAAAGAAAAATAC+AGG	+	chr1_1:77288406-77288425	None:intergenic	25.0%
!	ATTACTTCATTACCATCATT+TGG	+	chr1_1:77288698-77288717	None:intergenic	25.0%
!!	ATGAATTTTGTCTTCTGTTT+TGG	-	chr1_1:77288716-77288735	Msa0045360:CDS	25.0%
!	TGATCTTACCAGATATATTA+CGG	-	chr1_1:77288818-77288837	Msa0045360:intron	25.0%
!	CATTCATTTAATGATGTATG+TGG	-	chr1_1:77289034-77289053	Msa0045360:intron	25.0%
!	CATTCATTTAATGATGTATG+TGG	+	chr1_1:77289034-77289053	None:intergenic	25.0%
!!	TTGTGTTATATAATGGGATT+CGG	-	chr1_1:77289183-77289202	Msa0045360:intron	25.0%
!!	TTCAATTCTCTTTCTTTTCT+TGG	-	chr1_1:77289242-77289261	Msa0045360:intron	25.0%
!!	CAATTTTCATTGATACATCA+AGG	-	chr1_1:77289296-77289315	Msa0045360:intron	25.0%
!	TACAACCGTTAATAATATTG+AGG	+	chr1_1:77289949-77289968	None:intergenic	25.0%
!	ATATTATTAACGGTTGTATC+TGG	-	chr1_1:77289951-77289970	Msa0045360:intron	25.0%
!	CCAAAAGTAAAAAATGGTAT+AGG	+	chr1_1:77290360-77290379	None:intergenic	25.0%
!!!	CCTATACCATTTTTTACTTT+TGG	-	chr1_1:77290357-77290376	Msa0045360:CDS	25.0%
!!!	TACCATTTTTTACTTTTGGT+TGG	-	chr1_1:77290361-77290380	Msa0045360:CDS	25.0%
!!!	ACCATTTTTTACTTTTGGTT+GGG	-	chr1_1:77290362-77290381	Msa0045360:CDS	25.0%
	GAGATTGTCAATATTCGTTT+AGG	-	chr1_1:77285820-77285839	Msa0045360:three_prime_UTR	30.0%
	ACTATTGATCAGGTATTTGA+AGG	-	chr1_1:77286129-77286148	Msa0045360:three_prime_UTR	30.0%
	TGTCTTGTCTCAATGAAATT+TGG	-	chr1_1:77286310-77286329	Msa0045360:CDS	30.0%
	CTCAATGAAATTTGGATTAC+AGG	-	chr1_1:77286318-77286337	Msa0045360:CDS	30.0%
	TTATAAGTATAGCCAACCAT+CGG	+	chr1_1:77286416-77286435	None:intergenic	30.0%
	TTCTTTATCATTATCTGGGA+CGG	+	chr1_1:77286455-77286474	None:intergenic	30.0%
	TTGCATGTCATCTTGATTAA+TGG	-	chr1_1:77286540-77286559	Msa0045360:intron	30.0%
!	CTCTTGAATTGTATGACTTT+TGG	-	chr1_1:77286735-77286754	Msa0045360:intron	30.0%
	ATTGTGATCTGTGTTTCATT+TGG	-	chr1_1:77286764-77286783	Msa0045360:CDS	30.0%
!!	TTTGACTACTTTTGTAAAGG+CGG	+	chr1_1:77286894-77286913	None:intergenic	30.0%
!!	TGGTTTGACTACTTTTGTAA+AGG	+	chr1_1:77286897-77286916	None:intergenic	30.0%
	AGAAAATGGATCAGTTATTC+CGG	+	chr1_1:77286950-77286969	None:intergenic	30.0%
!!	TGAAATGGGTCAGTTATTTT+GGG	+	chr1_1:77286985-77287004	None:intergenic	30.0%
!	TTGAAATGGGTCAGTTATTT+TGG	+	chr1_1:77286986-77287005	None:intergenic	30.0%
	TGTATAAATAAAGGGGAAAG+TGG	+	chr1_1:77287089-77287108	None:intergenic	30.0%
	AATACGTCAGTAGGAATAAA+GGG	+	chr1_1:77287216-77287235	None:intergenic	30.0%
	TAATACGTCAGTAGGAATAA+AGG	+	chr1_1:77287217-77287236	None:intergenic	30.0%
	TATAAGCAATATCACAAGTG+AGG	+	chr1_1:77287305-77287324	None:intergenic	30.0%
	TCTTATTGCCTTAGATTAAG+CGG	-	chr1_1:77287340-77287359	Msa0045360:intron	30.0%
	AAAATAGACCGCTTAATCTA+AGG	+	chr1_1:77287351-77287370	None:intergenic	30.0%
	ACAAATCTTGATTTATGCAG+GGG	-	chr1_1:77287439-77287458	Msa0045360:intron	30.0%
!!!	CAATTTTGCCATTGTTTTTG+CGG	-	chr1_1:77287475-77287494	Msa0045360:intron	30.0%
	ACCAAAATTACCAGAATAAG+GGG	+	chr1_1:77287631-77287650	None:intergenic	30.0%
!!	TTTTTCCTTTCCAGTATTGA+TGG	-	chr1_1:77287665-77287684	Msa0045360:intron	30.0%
!!	TTCATTTTTCTTTGGGGATT+GGG	-	chr1_1:77287767-77287786	Msa0045360:intron	30.0%
!!!	GGATCAACATATTGTTTTTG+AGG	-	chr1_1:77288021-77288040	Msa0045360:CDS	30.0%
!	ATGTCTGTACAATTGCTATT+GGG	-	chr1_1:77288144-77288163	Msa0045360:intron	30.0%
	AGAATGGTAAACACAGTAAA+AGG	+	chr1_1:77288383-77288402	None:intergenic	30.0%
!	TCTCCTGTATTTTTCTTTAG+AGG	-	chr1_1:77288400-77288419	Msa0045360:intron	30.0%
	AGATCTGTATACATATAACC+AGG	+	chr1_1:77288599-77288618	None:intergenic	30.0%
	CATGGTTAGAATTGGAATTT+GGG	+	chr1_1:77288675-77288694	None:intergenic	30.0%
!!	TGTCTTCTGTTTTGGATAAA+AGG	-	chr1_1:77288724-77288743	Msa0045360:CDS	30.0%
	GTAATATATCTGGTAAGATC+AGG	+	chr1_1:77288819-77288838	None:intergenic	30.0%
	TGCATTATTACGAGAGAATT+TGG	-	chr1_1:77288942-77288961	Msa0045360:intron	30.0%
	GATGTATGTGGTTCATAATA+TGG	+	chr1_1:77289061-77289080	None:intergenic	30.0%
!!!	TTGCTTATATTTTGAAACGG+AGG	-	chr1_1:77289110-77289129	Msa0045360:intron	30.0%
!!!	TGCTTATATTTTGAAACGGA+GGG	-	chr1_1:77289111-77289130	Msa0045360:intron	30.0%
!!	TGTTGGCTTGTGTTATATAA+TGG	-	chr1_1:77289176-77289195	Msa0045360:intron	30.0%
!!	GTTGGCTTGTGTTATATAAT+GGG	-	chr1_1:77289177-77289196	Msa0045360:intron	30.0%
!!	GGTATTCTCTCTGAAAATTT+TGG	-	chr1_1:77289204-77289223	Msa0045360:intron	30.0%
	CAGGGATCATATATATTTCA+TGG	+	chr1_1:77289329-77289348	None:intergenic	30.0%
	CAATCTCATACAATTCATCA+GGG	+	chr1_1:77289347-77289366	None:intergenic	30.0%
	TAATGCTTAGAATGTTTACC+AGG	+	chr1_1:77289391-77289410	None:intergenic	30.0%
!	TTTCTTAATCAAAAGGTGTG+TGG	-	chr1_1:77289540-77289559	Msa0045360:intron	30.0%
	ACACTCTAATGATGTATCAT+TGG	-	chr1_1:77289566-77289585	Msa0045360:intron	30.0%
!!	TATGATGGATAGAACAAATG+CGG	+	chr1_1:77290248-77290267	None:intergenic	30.0%
	TATAGGAATCACAACATCTA+CGG	+	chr1_1:77290343-77290362	None:intergenic	30.0%
	TAATAAGGATAGTTGTCACT+TGG	-	chr1_1:77290507-77290526	Msa0045360:intron	30.0%
	ACGAACAGATAAATACATCA+AGG	+	chr1_1:77290539-77290558	None:intergenic	30.0%
	ACTTTCTCAAGAATGACCAA+TGG	+	chr1_1:77285679-77285698	None:intergenic	35.0%
	GGTCATTCTTGAGAAAGTTA+AGG	-	chr1_1:77285681-77285700	Msa0045360:three_prime_UTR	35.0%
!	AGGTATTTGAAGGTACATCT+GGG	-	chr1_1:77286139-77286158	Msa0045360:three_prime_UTR	35.0%
	AAAACACATAATTGAGCCGA+TGG	-	chr1_1:77286397-77286416	Msa0045360:CDS	35.0%
	GATTATCAGACTTCTCTAGT+CGG	+	chr1_1:77286633-77286652	None:intergenic	35.0%
	GAAGTCTGATAATCTTCTTG+AGG	-	chr1_1:77286639-77286658	Msa0045360:intron	35.0%
	GGGGAATAAAAAATGCGATA+AGG	-	chr1_1:77286837-77286856	Msa0045360:intron	35.0%
!!!	GTAGCATTGTGCTTGTTTTT+TGG	+	chr1_1:77286917-77286936	None:intergenic	35.0%
	GAAAATGGATCAGTTATTCC+GGG	+	chr1_1:77286949-77286968	None:intergenic	35.0%
	TCTGTGTGAAAAACCAAAGT+AGG	-	chr1_1:77287119-77287138	Msa0045360:intron	35.0%
	CCAAAGTAGGTCAATTATAC+CGG	-	chr1_1:77287132-77287151	Msa0045360:intron	35.0%
	CAAAGTAGGTCAATTATACC+GGG	-	chr1_1:77287133-77287152	Msa0045360:intron	35.0%
	ATTCATGTCAGTTTCTTCAC+AGG	+	chr1_1:77287270-77287289	None:intergenic	35.0%
	CAAATCTTGATTTATGCAGG+GGG	-	chr1_1:77287440-77287459	Msa0045360:intron	35.0%
!!!	GTTTTTTAAGCGTGACTTTG+AGG	-	chr1_1:77287526-77287545	Msa0045360:intron	35.0%
!	AGTGACCCTTTTCCTTAATT+TGG	-	chr1_1:77287568-77287587	Msa0045360:CDS	35.0%
	TCTTTAATTCCCCCTTATTC+TGG	-	chr1_1:77287618-77287637	Msa0045360:CDS	35.0%
	CCAAAATTACCAGAATAAGG+GGG	+	chr1_1:77287630-77287649	None:intergenic	35.0%
	TTCAACCATCAATACTGGAA+AGG	+	chr1_1:77287673-77287692	None:intergenic	35.0%
!!	TTCCAGTATTGATGGTTGAA+TGG	-	chr1_1:77287673-77287692	Msa0045360:intron	35.0%
!!	CTTCATTTTTCTTTGGGGAT+TGG	-	chr1_1:77287766-77287785	Msa0045360:intron	35.0%
!!	TCATTTTTCTTTGGGGATTG+GGG	-	chr1_1:77287768-77287787	Msa0045360:intron	35.0%
!!	ACTTCACATGTGTTTGGTTT+TGG	+	chr1_1:77287913-77287932	None:intergenic	35.0%
	TGTACAGACATGTAAGAAAC+AGG	+	chr1_1:77288135-77288154	None:intergenic	35.0%
	CATGTCTGTACAATTGCTAT+TGG	-	chr1_1:77288143-77288162	Msa0045360:intron	35.0%
!	TTGCTATTGGGATTTACTGT+AGG	-	chr1_1:77288156-77288175	Msa0045360:intron	35.0%
	TCTTACTACTGCTGAATATC+TGG	-	chr1_1:77288222-77288241	Msa0045360:intron	35.0%
!	GAATATCTGGCTTATGAATG+TGG	-	chr1_1:77288235-77288254	Msa0045360:intron	35.0%
	GCAACAATTTATGAACATGC+CGG	-	chr1_1:77288620-77288639	Msa0045360:intron	35.0%
	GCATGGTTAGAATTGGAATT+TGG	+	chr1_1:77288676-77288695	None:intergenic	35.0%
	TCATTTGGCATGGTTAGAAT+TGG	+	chr1_1:77288683-77288702	None:intergenic	35.0%
	ATTCTAACCATGCCAAATGA+TGG	-	chr1_1:77288683-77288702	Msa0045360:CDS	35.0%
	TTCATTACCATCATTTGGCA+TGG	+	chr1_1:77288693-77288712	None:intergenic	35.0%
	TCTTACCAGATATATTACGG+AGG	-	chr1_1:77288821-77288840	Msa0045360:intron	35.0%
	CTTACCAGATATATTACGGA+GGG	-	chr1_1:77288822-77288841	Msa0045360:intron	35.0%
	AACTAATCCAACATGGCTTA+TGG	+	chr1_1:77288920-77288939	None:intergenic	35.0%
	ATGCAGTAACTAATCCAACA+TGG	+	chr1_1:77288927-77288946	None:intergenic	35.0%
!!!	TGCTTACATTTTGGAACAGA+GGG	+	chr1_1:77288996-77289015	None:intergenic	35.0%
!!!	TTGCTTACATTTTGGAACAG+AGG	+	chr1_1:77288997-77289016	None:intergenic	35.0%
	CCAATCTCATACAATTCATC+AGG	+	chr1_1:77289348-77289367	None:intergenic	35.0%
	CCTGATGAATTGTATGAGAT+TGG	-	chr1_1:77289345-77289364	Msa0045360:intron	35.0%
!	ATGGAAGAACATTGATTGGT+GGG	+	chr1_1:77289449-77289468	None:intergenic	35.0%
!	AGTGATGGAAGAACATTGAT+TGG	+	chr1_1:77289453-77289472	None:intergenic	35.0%
	ATGTTCTTCCATCACTATCT+CGG	-	chr1_1:77289457-77289476	Msa0045360:intron	35.0%
	GATTTCAAAGTTCTGTCAAG+TGG	-	chr1_1:77289507-77289526	Msa0045360:intron	35.0%
	AGAGAAAATTAGTAGATGCC+AGG	+	chr1_1:77289858-77289877	None:intergenic	35.0%
	TAGTGAAATTGTCCTTGAAG+TGG	-	chr1_1:77289903-77289922	Msa0045360:intron	35.0%
	AGTGAAATTGTCCTTGAAGT+GGG	-	chr1_1:77289904-77289923	Msa0045360:intron	35.0%
	CTTCATTAATACCCACTTCA+AGG	+	chr1_1:77289918-77289937	None:intergenic	35.0%
!	AATTTCTGGACAAGTTTGAG+AGG	-	chr1_1:77289974-77289993	Msa0045360:intron	35.0%
	TAGAGACTGGAATATATTGC+GGG	+	chr1_1:77290028-77290047	None:intergenic	35.0%
	CTAGAGACTGGAATATATTG+CGG	+	chr1_1:77290029-77290048	None:intergenic	35.0%
	ATCATCAATTACCAGCATCT+CGG	+	chr1_1:77290134-77290153	None:intergenic	35.0%
	AATCAATTGCCCATGACATT+AGG	+	chr1_1:77290200-77290219	None:intergenic	35.0%
	ATAGGAATCACAACATCTAC+GGG	+	chr1_1:77290342-77290361	None:intergenic	35.0%
	GCCCAACCAAAAGTAAAAAA+TGG	+	chr1_1:77290366-77290385	None:intergenic	35.0%
	GAAACAAGCAAACATACACT+GGG	+	chr1_1:77290445-77290464	None:intergenic	35.0%
	TGAAACAAGCAAACATACAC+TGG	+	chr1_1:77290446-77290465	None:intergenic	35.0%
!!!	TGAAACAGGCTTTTTTAGTC+TGG	-	chr1_1:77290580-77290599	Msa0045360:CDS	35.0%
!!!	GAAACAGGCTTTTTTAGTCT+GGG	-	chr1_1:77290581-77290600	Msa0045360:CDS	35.0%
!!!	AAACAGGCTTTTTTAGTCTG+GGG	-	chr1_1:77290582-77290601	Msa0045360:CDS	35.0%
	ACAGAATACATGACTGTGTC+TGG	-	chr1_1:77285643-77285662	Msa0045360:three_prime_UTR	40.0%
	TAACTTCGGTCAACTGCATT+AGG	-	chr1_1:77285783-77285802	Msa0045360:three_prime_UTR	40.0%
	AACTTCGGTCAACTGCATTA+GGG	-	chr1_1:77285784-77285803	Msa0045360:three_prime_UTR	40.0%
	GTCAATATTCGTTTAGGCGA+TGG	-	chr1_1:77285826-77285845	Msa0045360:three_prime_UTR	40.0%
!	GTCAGAAGCTCAGAACATTT+TGG	+	chr1_1:77285967-77285986	None:intergenic	40.0%
	AATAAAGCAGACAACGATGG+AGG	+	chr1_1:77286010-77286029	None:intergenic	40.0%
	GTGAATAAAGCAGACAACGA+TGG	+	chr1_1:77286013-77286032	None:intergenic	40.0%
!	CAGGTATTTGAAGGTACATC+TGG	-	chr1_1:77286138-77286157	Msa0045360:three_prime_UTR	40.0%
	TTTACGACCGTACAGTTTAC+TGG	-	chr1_1:77286174-77286193	Msa0045360:three_prime_UTR	40.0%
	TACCTCTCCAGTAAACTGTA+CGG	+	chr1_1:77286184-77286203	None:intergenic	40.0%
!	TATCATTATCTGGGACGGTT+TGG	+	chr1_1:77286450-77286469	None:intergenic	40.0%
	GCTTAGGTGATAGTTACGAT+TGG	+	chr1_1:77286485-77286504	None:intergenic	40.0%
	CCGGTATAATTGACCTACTT+TGG	+	chr1_1:77287135-77287154	None:intergenic	40.0%
	AGTTTCTTCACAGGAGTTGT+TGG	+	chr1_1:77287261-77287280	None:intergenic	40.0%
!	CCCCCTTATTCTGGTAATTT+TGG	-	chr1_1:77287627-77287646	Msa0045360:CDS	40.0%
	AGCCATTCAACCATCAATAC+TGG	+	chr1_1:77287678-77287697	None:intergenic	40.0%
	ACCAAACACATGTGAAGTGT+AGG	-	chr1_1:77287915-77287934	Msa0045360:intron	40.0%
	CCAAACACATGTGAAGTGTA+GGG	-	chr1_1:77287916-77287935	Msa0045360:intron	40.0%
	GTGATGATACGTTCGATTGT+AGG	+	chr1_1:77288190-77288209	None:intergenic	40.0%
	CTTCTTGTTCTTGATCCTAC+AGG	-	chr1_1:77288532-77288551	Msa0045360:intron	40.0%
	TATCTGGTAAGATCAGGAGT+TGG	+	chr1_1:77288813-77288832	None:intergenic	40.0%
	AGGGACAGATATACATCGAT+AGG	-	chr1_1:77288841-77288860	Msa0045360:intron	40.0%
	TAGGCAGTTGCATAATAGAC+AGG	-	chr1_1:77288860-77288879	Msa0045360:intron	40.0%
	CAGTTGCATAATAGACAGGT+GGG	-	chr1_1:77288864-77288883	Msa0045360:intron	40.0%
	ATGAATGCCATAAGCCATGT+TGG	-	chr1_1:77288910-77288929	Msa0045360:intron	40.0%
	TACAATCAGTCTAAGTGACC+TGG	-	chr1_1:77289370-77289389	Msa0045360:intron	40.0%
!	GATGGAAGAACATTGATTGG+TGG	+	chr1_1:77289450-77289469	None:intergenic	40.0%
	TTCATCAACCGAGATAGTGA+TGG	+	chr1_1:77289468-77289487	None:intergenic	40.0%
!!	ATCACTATCTCGGTTGATGA+AGG	-	chr1_1:77289467-77289486	Msa0045360:intron	40.0%
	CTGTATGCAACTTATGCCAT+TGG	-	chr1_1:77289775-77289794	Msa0045360:intron	40.0%
	TGCAACTTATGCCATTGGAA+AGG	-	chr1_1:77289780-77289799	Msa0045360:intron	40.0%
!!	AGAAGAAGCACTTTCATCTG+AGG	-	chr1_1:77289831-77289850	Msa0045360:intron	40.0%
!	ACGGTTGTATCTGGAATTTC+TGG	-	chr1_1:77289960-77289979	Msa0045360:intron	40.0%
	ATCTTGCATGGACTTTACTC+CGG	-	chr1_1:77290049-77290068	Msa0045360:CDS	40.0%
!	TACGATGAAGAAGTACACGA+GGG	+	chr1_1:77290080-77290099	None:intergenic	40.0%
!	ATACGATGAAGAAGTACACG+AGG	+	chr1_1:77290081-77290100	None:intergenic	40.0%
	GTAAAACTGGTCAAGAGTCT+TGG	+	chr1_1:77290109-77290128	None:intergenic	40.0%
	GATAGAACAAATGCGGACTT+AGG	+	chr1_1:77290241-77290260	None:intergenic	40.0%
	CTGAACAGGCTCAAAATATG+AGG	+	chr1_1:77290302-77290321	None:intergenic	40.0%
	TTCTTTCGGACTAACTGAAC+AGG	+	chr1_1:77290316-77290335	None:intergenic	40.0%
	ACATCTACGGGTTCTTCTTT+CGG	+	chr1_1:77290330-77290349	None:intergenic	40.0%
	TACTTGTGTTGCACACAGTT+TGG	-	chr1_1:77290393-77290412	Msa0045360:CDS	40.0%
	ACTTGTGTTGCACACAGTTT+GGG	-	chr1_1:77290394-77290413	Msa0045360:CDS	40.0%
!	TTTGGGATGGTTGGAATTTG+TGG	-	chr1_1:77290411-77290430	Msa0045360:CDS	40.0%
!!!	CTTTTTTAGTCTGGGGAATC+TGG	-	chr1_1:77290589-77290608	Msa0045360:CDS	40.0%
!	ATGACTGTGTCTGGAGTTAC+CGG	-	chr1_1:77285652-77285671	Msa0045360:three_prime_UTR	45.0%
	CTCAAGAATGACCAATGGTC+CGG	+	chr1_1:77285674-77285693	None:intergenic	45.0%
	GGACAAGTTCTCGAGATTGA+TGG	-	chr1_1:77285862-77285881	Msa0045360:three_prime_UTR	45.0%
!!	TCTCGAGATTGATGGCGAAA+AGG	-	chr1_1:77285870-77285889	Msa0045360:three_prime_UTR	45.0%
	CACATAATTGAGCCGATGGT+TGG	-	chr1_1:77286401-77286420	Msa0045360:CDS	45.0%
!!	ATTATCTGGGACGGTTTGGT+AGG	+	chr1_1:77286446-77286465	None:intergenic	45.0%
!!	ACAGCAGTTTTGGCATGCTT+AGG	+	chr1_1:77286501-77286520	None:intergenic	45.0%
	TGACATGCAACACAGTCTGA+CGG	+	chr1_1:77286530-77286549	None:intergenic	45.0%
!	CGATAAGGTTACAGTGCTGA+AGG	-	chr1_1:77286852-77286871	Msa0045360:intron	45.0%
	ATGGATCAGTTATTCCGGGA+CGG	+	chr1_1:77286945-77286964	None:intergenic	45.0%
	GTAGGTCAATTATACCGGGA+CGG	-	chr1_1:77287137-77287156	Msa0045360:intron	45.0%
	ATCATATACTACCTCCGTCC+CGG	+	chr1_1:77287154-77287173	None:intergenic	45.0%
	ATCTTGATTTATGCAGGGGG+AGG	-	chr1_1:77287443-77287462	Msa0045360:intron	45.0%
!!!	TGCCATTGTTTTTGCGGCTA+TGG	-	chr1_1:77287481-77287500	Msa0045360:intron	45.0%
!!!	GCCATTGTTTTTGCGGCTAT+GGG	-	chr1_1:77287482-77287501	Msa0045360:intron	45.0%
	TCCCATAGCCGCAAAAACAA+TGG	+	chr1_1:77287486-77287505	None:intergenic	45.0%
!	AAGCGTGACTTTGAGGAGAA+TGG	-	chr1_1:77287533-77287552	Msa0045360:CDS	45.0%
!	CTTTGAGGAGAATGGCTCAA+TGG	-	chr1_1:77287541-77287560	Msa0045360:CDS	45.0%
	CCCTACACTTCACATGTGTT+TGG	+	chr1_1:77287919-77287938	None:intergenic	45.0%
	GCAGTAGTAAGAGCAATACG+AGG	+	chr1_1:77288214-77288233	None:intergenic	45.0%
	TTATGCTGATGCTCTTCGTG+AGG	-	chr1_1:77288294-77288313	Msa0045360:intron	45.0%
	TGAACATGCCGGAAGAATTG+AGG	-	chr1_1:77288631-77288650	Msa0045360:intron	45.0%
	GAACATGCCGGAAGAATTGA+GGG	-	chr1_1:77288632-77288651	Msa0045360:intron	45.0%
	AACATGCCGGAAGAATTGAG+GGG	-	chr1_1:77288633-77288652	Msa0045360:intron	45.0%
	TTTACGCCCCTCAATTCTTC+CGG	+	chr1_1:77288642-77288661	None:intergenic	45.0%
	CTGTCCCTCCGTAATATATC+TGG	+	chr1_1:77288829-77288848	None:intergenic	45.0%
	GCAGTTGCATAATAGACAGG+TGG	-	chr1_1:77288863-77288882	Msa0045360:intron	45.0%
	TGGCTTATGGCATTCATCAC+AGG	+	chr1_1:77288907-77288926	None:intergenic	45.0%
	TCATTCTGATGTGTCCAACC+AGG	-	chr1_1:77289633-77289652	Msa0045360:intron	45.0%
	CAAACAAGAAGAGACCTGGT+TGG	+	chr1_1:77289650-77289669	None:intergenic	45.0%
	GGAACAAACAAGAAGAGACC+TGG	+	chr1_1:77289654-77289673	None:intergenic	45.0%
!	GAATATATTGCGGGTGTCGT+AGG	+	chr1_1:77290019-77290038	None:intergenic	45.0%
	TCCAGTCTCTAGATCTTGCA+TGG	-	chr1_1:77290037-77290056	Msa0045360:CDS	45.0%
	TCCATGCAAGATCTAGAGAC+TGG	+	chr1_1:77290041-77290060	None:intergenic	45.0%
	GAAGTACACGAGGGAAAATC+CGG	+	chr1_1:77290071-77290090	None:intergenic	45.0%
	GCTGATTGAGCAAGAGACTA+AGG	+	chr1_1:77290176-77290195	None:intergenic	45.0%
	TCAATCAGCGCCTAATGTCA+TGG	-	chr1_1:77290187-77290206	Msa0045360:intron	45.0%
	CAATCAGCGCCTAATGTCAT+GGG	-	chr1_1:77290188-77290207	Msa0045360:intron	45.0%
!!!	ATTATAATTTTTTTAATAAG+GGG	+	chr1_1:77288081-77288100	None:intergenic	5.0%
!!!	CATTATAATTTTTTTAATAA+GGG	+	chr1_1:77288082-77288101	None:intergenic	5.0%
!!!	TCATTATAATTTTTTTAATA+AGG	+	chr1_1:77288083-77288102	None:intergenic	5.0%
	GTTTAGGCGATGGAACTACC+CGG	-	chr1_1:77285836-77285855	Msa0045360:three_prime_UTR	50.0%
	TCTCGAGAACTTGTCCATGC+CGG	+	chr1_1:77285858-77285877	None:intergenic	50.0%
	TGGCGAAAAGGCTGTTGTTC+AGG	-	chr1_1:77285882-77285901	Msa0045360:three_prime_UTR	50.0%
	GACCGTACAGTTTACTGGAG+AGG	-	chr1_1:77286179-77286198	Msa0045360:three_prime_UTR	50.0%
!	ACGGGGGATAACAGCAGTTT+TGG	+	chr1_1:77286511-77286530	None:intergenic	50.0%
	ACATGCAACACAGTCTGACG+GGG	+	chr1_1:77286528-77286547	None:intergenic	50.0%
	GACATGCAACACAGTCTGAC+GGG	+	chr1_1:77286529-77286548	None:intergenic	50.0%
	AGCCTGACGACAAATCTGTG+CGG	+	chr1_1:77286599-77286618	None:intergenic	50.0%
	ATCAGTTATTCCGGGACGGA+GGG	+	chr1_1:77286941-77286960	None:intergenic	50.0%
	TGCGGCTATGGGAGTTAACA+TGG	-	chr1_1:77287493-77287512	Msa0045360:intron	50.0%
!	GGAAGAATTGAGGGGCGTAA+AGG	-	chr1_1:77288641-77288660	Msa0045360:intron	50.0%
!	TCACCACTGCAGAGTGCTAT+TGG	-	chr1_1:77289589-77289608	Msa0045360:intron	50.0%
!	CACCACTGCAGAGTGCTATT+GGG	-	chr1_1:77289590-77289609	Msa0045360:intron	50.0%
!	ACCACTGCAGAGTGCTATTG+GGG	-	chr1_1:77289591-77289610	Msa0045360:intron	50.0%
	TGGGGAGGGAATGACTAGAA+AGG	-	chr1_1:77289609-77289628	Msa0045360:intron	50.0%
	TGCCATTGGAAAGGATGTCC+AGG	-	chr1_1:77289789-77289808	Msa0045360:intron	50.0%
	TGCCTGGACATCCTTTCCAA+TGG	+	chr1_1:77289794-77289813	None:intergenic	50.0%
	AGCACTTTCATCTGAGGACC+TGG	-	chr1_1:77289837-77289856	Msa0045360:intron	50.0%
	AACTGGTCAAGAGTCTTGGC+TGG	+	chr1_1:77290105-77290124	None:intergenic	50.0%
	CAGCATCTCGGCTGTAAAAC+TGG	+	chr1_1:77290122-77290141	None:intergenic	50.0%
!	CAGTTTTACAGCCGAGATGC+TGG	-	chr1_1:77290120-77290139	Msa0045360:intron	50.0%
	GTGTTGCACACAGTTTGGGA+TGG	-	chr1_1:77290398-77290417	Msa0045360:CDS	50.0%
!	TGCACACAGTTTGGGATGGT+TGG	-	chr1_1:77290402-77290421	Msa0045360:CDS	50.0%
!	GTCTGGAGTTACCGGACCAT+TGG	-	chr1_1:77285660-77285679	Msa0045360:three_prime_UTR	55.0%
	CTCGAGAACTTGTCCATGCC+GGG	+	chr1_1:77285857-77285876	None:intergenic	55.0%
	CATGCAACACAGTCTGACGG+GGG	+	chr1_1:77286527-77286546	None:intergenic	55.0%
	TGCCGCACAGATTTGTCGTC+AGG	-	chr1_1:77286594-77286613	Msa0045360:CDS	55.0%
	GCACAGATTTGTCGTCAGGC+TGG	-	chr1_1:77286598-77286617	Msa0045360:CDS	55.0%
	GATCAGTTATTCCGGGACGG+AGG	+	chr1_1:77286942-77286961	None:intergenic	55.0%
	GGTCAATTATACCGGGACGG+AGG	-	chr1_1:77287140-77287159	Msa0045360:intron	55.0%
	CTCTGGCAGCAGATACCTGT+AGG	+	chr1_1:77288550-77288569	None:intergenic	55.0%
	GGTATCTGCTGCCAGAGAAG+AGG	-	chr1_1:77288553-77288572	Msa0045360:intron	55.0%
	TCTTCCTGGCACCTCTTCTC+TGG	+	chr1_1:77288567-77288586	None:intergenic	55.0%
	CCAGGATAACCACGTCTTCC+TGG	+	chr1_1:77288581-77288600	None:intergenic	55.0%
	CCAGGAAGACGTGGTTATCC+TGG	-	chr1_1:77288578-77288597	Msa0045360:intron	55.0%
	TCCCCAATAGCACTCTGCAG+TGG	+	chr1_1:77289595-77289614	None:intergenic	55.0%
!	ACTGCAGAGTGCTATTGGGG+AGG	-	chr1_1:77289594-77289613	Msa0045360:intron	55.0%
!	CTGCAGAGTGCTATTGGGGA+GGG	-	chr1_1:77289595-77289614	Msa0045360:intron	55.0%
	CAACGACAGCTTTCGTTGCC+TGG	+	chr1_1:77289810-77289829	None:intergenic	55.0%
	CAGGCAACGAAAGCTGTCGT+TGG	-	chr1_1:77289808-77289827	Msa0045360:intron	55.0%
	TGAGAGGAAGTCTGTTGCCC+AGG	-	chr1_1:77289990-77290009	Msa0045360:intron	55.0%
	GAGAGGAAGTCTGTTGCCCA+GGG	-	chr1_1:77289991-77290010	Msa0045360:intron	55.0%
	CAATGCTACTCCCTCCGTCC+CGG	-	chr1_1:77286928-77286947	Msa0045360:intron	60.0%
!!	GAAGAGGTGCCAGGAAGACG+TGG	-	chr1_1:77288569-77288588	Msa0045360:intron	60.0%
	GGCGATGGAACTACCCGGCA+TGG	-	chr1_1:77285841-77285860	Msa0045360:three_prime_UTR	65.0%
!!	GCTGCCAGAGAAGAGGTGCC+AGG	-	chr1_1:77288560-77288579	Msa0045360:intron	65.0%
!	GCGGGTGTCGTAGGCTCCCT+GGG	+	chr1_1:77290010-77290029	None:intergenic	70.0%
!	TGCGGGTGTCGTAGGCTCCC+TGG	+	chr1_1:77290011-77290030	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	77285622	77290613	77285622	ID=Msa0045360;Name=Msa0045360
chr1_1	mRNA	77285622	77290613	77285622	ID=Msa0045360-mRNA-1;Parent=Msa0045360;Name=Msa0045360-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0\|0.8\|0.81\|0.90\|1\|1\|11\|653\|351
chr1_1	exon	77285622	77286460	77285622	ID=Msa0045360-mRNA-1:exon:26421;Parent=Msa0045360-mRNA-1
chr1_1	exon	77286581	77286634	77286581	ID=Msa0045360-mRNA-1:exon:26420;Parent=Msa0045360-mRNA-1
chr1_1	exon	77286747	77286794	77286747	ID=Msa0045360-mRNA-1:exon:26419;Parent=Msa0045360-mRNA-1
chr1_1	exon	77287354	77287436	77287354	ID=Msa0045360-mRNA-1:exon:26418;Parent=Msa0045360-mRNA-1
chr1_1	exon	77287531	77287681	77287531	ID=Msa0045360-mRNA-1:exon:26417;Parent=Msa0045360-mRNA-1
chr1_1	exon	77287920	77288057	77287920	ID=Msa0045360-mRNA-1:exon:26416;Parent=Msa0045360-mRNA-1
chr1_1	exon	77288646	77288776	77288646	ID=Msa0045360-mRNA-1:exon:26415;Parent=Msa0045360-mRNA-1
chr1_1	exon	77289871	77289895	77289871	ID=Msa0045360-mRNA-1:exon:26414;Parent=Msa0045360-mRNA-1
chr1_1	exon	77290035	77290094	77290035	ID=Msa0045360-mRNA-1:exon:26413;Parent=Msa0045360-mRNA-1
chr1_1	exon	77290332	77290430	77290332	ID=Msa0045360-mRNA-1:exon:26412;Parent=Msa0045360-mRNA-1
chr1_1	exon	77290533	77290613	77290533	ID=Msa0045360-mRNA-1:exon:26411;Parent=Msa0045360-mRNA-1
chr1_1	CDS	77290533	77290613	77290533	ID=Msa0045360-mRNA-1:cds;Parent=Msa0045360-mRNA-1
chr1_1	CDS	77290332	77290430	77290332	ID=Msa0045360-mRNA-1:cds;Parent=Msa0045360-mRNA-1
chr1_1	CDS	77290035	77290094	77290035	ID=Msa0045360-mRNA-1:cds;Parent=Msa0045360-mRNA-1
chr1_1	CDS	77289871	77289895	77289871	ID=Msa0045360-mRNA-1:cds;Parent=Msa0045360-mRNA-1
chr1_1	CDS	77288646	77288776	77288646	ID=Msa0045360-mRNA-1:cds;Parent=Msa0045360-mRNA-1
chr1_1	CDS	77287920	77288057	77287920	ID=Msa0045360-mRNA-1:cds;Parent=Msa0045360-mRNA-1
chr1_1	CDS	77287531	77287681	77287531	ID=Msa0045360-mRNA-1:cds;Parent=Msa0045360-mRNA-1
chr1_1	CDS	77287354	77287436	77287354	ID=Msa0045360-mRNA-1:cds;Parent=Msa0045360-mRNA-1
chr1_1	CDS	77286747	77286794	77286747	ID=Msa0045360-mRNA-1:cds;Parent=Msa0045360-mRNA-1
chr1_1	CDS	77286581	77286634	77286581	ID=Msa0045360-mRNA-1:cds;Parent=Msa0045360-mRNA-1
chr1_1	CDS	77286275	77286460	77286275	ID=Msa0045360-mRNA-1:cds;Parent=Msa0045360-mRNA-1
chr1_1	three_prime_UTR	77285622	77286274	77285622	ID=Msa0045360-mRNA-1:three_prime_utr;Parent=Msa0045360-mRNA-1

Gene Sequence

>Msa0045360

ATGTGTCTCTTTATTAATGTCACAGAATACATGACTGTGTCTGGAGTTACCGGACCATTGGTCATTCTTGAGAAAGTTAAGGGACCCAAATATCAAGAGATTGTCAATATTCGTTTAGGCGATGGAACTACCCGGCATGGACAAGTTCTCGAGATTGATGGCGAAAAGGCTGTTGTTCAGGTATTTGAAGGTACATCTGGGATTGACAATAAATTTACGACCGTACAGTTTACTGGAGAGGACCTAAATAATGCATTAACTGTTAGGGGAGGAGAAGACGACAATTTTGCCATTGTTTTTGCGGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTTAAGCGTGACTTTGAGGAGAATGGCTCAATGGAGAGAGTGACCCTTTTCCTTAATTTGGCAAATGATCCTACAATCGAACGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATCTGGCTTATGAATGTGGCAAGCATGTTCTCGTGATACTCACAGATATGTGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCAGAGAAGAGGTGCCAGGAAGACGTGGTTATCCTGGTTATATGTATACAGATCTTGCAACAATTTATGAACATGCCGGAAGAATTGAGGGGCGTAAAGGCTCAATTACCCAAATTCCAATTCTAACCATGCCAAATGATGATATTACACATCCAACTCCTGATCTTACCAGATATATTACGGAGGGACAGATATACATCGATAGGCAGTTGCATAATAGACAGATATACCCACCAATCAATGTTCTTCCATCACTATCTCGGTTGATGAAGAGTGCTATTGGGGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGCTGTATGCAACTTATGCCATTGGAAAGGATGTCCAGGCAACGAAAGCTGTCGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGGCATCTACTAATTTTCTCTCGAGCTGTTTTTTTTTTTTTTTATATAGTGAAATTGTCCTTGAAGTGGGTATTAATGAAGCTTATTTTCCTCAATATTATTAA

Protein sequence

>Msa0045360

MCLFINVTEYMTVSGVTGPLVILEKVKGPKYQEIVNIRLGDGTTRHGQVLEIDGEKAVVQVFEGTSGIDNKFTTVQFTGEDLNNALTVRGGEDDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMCSYADALREVSAAREEVPGRRGYPGYMYTDLATIYEHAGRIEGRKGSITQIPILTMPNDDITHPTPDLTRYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYATYAIGKDVQATKAVVGEEALSSEDLASTNFLSSCFFFFLYSEIVLEVGINEAYFPQYY*