Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045510 | sp|Q5S4V7|FB129_ARATH | 43.824 | 340 | 182 | 6 | 20 | 352 | 20 | 357 | 2.55e-73 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045510 | Msa0484870 | 0.801570 | 8.460403e-49 | -8.615850e-47 |
| Msa0045510 | Msa0740630 | 0.803504 | 3.377793e-49 | -8.615850e-47 |
| Msa0045510 | Msa0820880 | 0.807309 | 5.383401e-50 | -8.615850e-47 |
| Msa0045510 | Msa0859040 | 0.811245 | 7.710517e-51 | -8.615850e-47 |
| Msa0045510 | Msa1371670 | 0.991226 | 1.531739e-186 | -8.615850e-47 |
| Msa0045510 | Msa1376210 | 0.959894 | 6.008915e-118 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045510 | MtrunA17_Chr1g0212661 | 92.468 | 385 | 29 | 0 | 1 | 385 | 1 | 385 | 0.0 | 726 |
| Msa0045510 | MtrunA17_Chr7g0222801 | 63.359 | 393 | 134 | 4 | 2 | 385 | 4 | 395 | 6.84e-164 | 469 |
| Msa0045510 | MtrunA17_Chr1g0212641 | 80.741 | 135 | 23 | 1 | 99 | 230 | 10 | 144 | 1.88e-66 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045510 | AT2G39490.1 | 43.824 | 340 | 182 | 6 | 20 | 352 | 20 | 357 | 2.60e-74 | 240 |
Find 91 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCAATCGTTTCAAATT+TGG | 0.134858 | 1_1:-77465923 | Msa0045510:CDS |
| AAGAACTTCAGAATTCTTTA+TGG | 0.162628 | 1_1:+77465624 | None:intergenic |
| CATGTTCTGGATCGCTATTT+TGG | 0.204502 | 1_1:-77463420 | Msa0045510:CDS |
| GCCACTGAAATTTCAGCTAT+TGG | 0.231284 | 1_1:+77464680 | None:intergenic |
| CCACTTGACGTCTCTATCTT+TGG | 0.252261 | 1_1:+77464623 | None:intergenic |
| CACTGTAGTGGCTATAATTC+TGG | 0.262779 | 1_1:+77463756 | None:intergenic |
| AGAATTAGAGCATCTAAAAT+TGG | 0.265224 | 1_1:-77464726 | Msa0045510:CDS |
| TGGATCTAAATCGTCAAAAT+TGG | 0.275752 | 1_1:+77466176 | None:intergenic |
| AGCTTGCGTGGTTGCTTTAA+TGG | 0.277566 | 1_1:+77466156 | None:intergenic |
| TCTGCTCCGCAGTCAAATTT+AGG | 0.329512 | 1_1:-77464773 | Msa0045510:CDS |
| AATCCATTTCGATCTGAATA+TGG | 0.330082 | 1_1:-77463790 | Msa0045510:CDS |
| CACAAGTTGAAATGAGATTC+TGG | 0.342737 | 1_1:+77465724 | None:intergenic |
| TATTTGCCAGATGAAATTCT+AGG | 0.345450 | 1_1:-77466339 | Msa0045510:CDS |
| ACTTCAACTGCAAGCAATCT+AGG | 0.370790 | 1_1:+77465812 | None:intergenic |
| GTGGACCTCTTCCTCAGATT+TGG | 0.372608 | 1_1:-77465747 | Msa0045510:CDS |
| GCTTCTGCTTCTGTTGTTGT+TGG | 0.374544 | 1_1:-77463716 | Msa0045510:CDS |
| AATTCTTGCAGACACTGATA+TGG | 0.376690 | 1_1:-77465330 | Msa0045510:intron |
| TCTAAAATTGGTAAAGTTCA+AGG | 0.381812 | 1_1:-77464714 | Msa0045510:CDS |
| AAGTTCTTACTTTATGTGAA+TGG | 0.384442 | 1_1:-77465609 | Msa0045510:CDS |
| CTACTAGGTGGAGAGACTTA+TGG | 0.390498 | 1_1:-77466263 | Msa0045510:CDS |
| GCTACCGATTCTGCATGTTC+TGG | 0.394678 | 1_1:-77463433 | Msa0045510:CDS |
| TGGAAGTTCAGCAGCAAAAT+CGG | 0.420198 | 1_1:+77463499 | None:intergenic |
| CTTCTGCTTCTGTTGTTGTT+GGG | 0.421959 | 1_1:-77463715 | Msa0045510:CDS |
| GTTTCAAGTGCATATTCATT+TGG | 0.422873 | 1_1:+77466297 | None:intergenic |
| GACGTCAAGTGGGAGCAATT+TGG | 0.426674 | 1_1:-77464612 | Msa0045510:CDS |
| GTGGGCAATCGGTTACCAAT+TGG | 0.430407 | 1_1:-77463391 | Msa0045510:CDS |
| TCAGACAAGGGCTAAGCTGC+AGG | 0.433267 | 1_1:-77465684 | Msa0045510:CDS |
| CGGTGGCTGATTGAAAATAT+CGG | 0.449424 | 1_1:+77463519 | None:intergenic |
| TAAGTTTAGAAGTTCTAAGA+TGG | 0.451127 | 1_1:+77465785 | None:intergenic |
| TCTATAAATTGAGAGAGTTA+TGG | 0.451792 | 1_1:-77465273 | Msa0045510:CDS |
| ACTTTCAACACTGGAAAATA+CGG | 0.452494 | 1_1:-77463476 | Msa0045510:CDS |
| GGTTACCGATGGCGTCCAAT+TGG | 0.455175 | 1_1:+77463376 | None:intergenic |
| TTAGCCCTTGTCTGAAATCA+AGG | 0.468763 | 1_1:+77465692 | None:intergenic |
| CTTGACGTCTCTATCTTTGG+AGG | 0.472938 | 1_1:+77464626 | None:intergenic |
| ACAGAAAGTTGCTCCAATGC+AGG | 0.473084 | 1_1:+77465187 | None:intergenic |
| CTTGAAATTATGCCCTGCAT+TGG | 0.474163 | 1_1:-77465200 | Msa0045510:CDS |
| CGATCCAGAACATGCAGAAT+CGG | 0.475579 | 1_1:+77463429 | None:intergenic |
| CTCTCCACCTAGTAGATATG+AGG | 0.477554 | 1_1:+77466271 | None:intergenic |
| TCACCATATTCAGATCGAAA+TGG | 0.477565 | 1_1:+77463787 | None:intergenic |
| ATGCAGCCTAGAATTTCATC+TGG | 0.480500 | 1_1:+77466333 | None:intergenic |
| TTTGGGCTTAAGTGGGCAAT+CGG | 0.481307 | 1_1:-77463402 | Msa0045510:CDS |
| ATTCTGAACACTTTCTTCCA+TGG | 0.490138 | 1_1:+77466371 | None:intergenic |
| CCACTCGAAGGAGAAATTGA+TGG | 0.492463 | 1_1:+77465307 | None:intergenic |
| GTTGGGCTTCCTGCCATCCA+TGG | 0.503721 | 1_1:-77463698 | Msa0045510:intron |
| CTAAAATTGGTAAAGTTCAA+GGG | 0.506831 | 1_1:-77464713 | Msa0045510:CDS |
| GCATGCACACCATGGATGGC+AGG | 0.507497 | 1_1:+77463689 | None:intergenic |
| GAGGAAGAGGTCCACGATAA+CGG | 0.510369 | 1_1:+77465755 | None:intergenic |
| AGATTGCAATCCACAACAAT+CGG | 0.513328 | 1_1:+77465876 | None:intergenic |
| ATAAATTGAGAGAGTTATGG+TGG | 0.517963 | 1_1:-77465270 | Msa0045510:CDS |
| AAACCAGCCTCATATCTACT+AGG | 0.521704 | 1_1:-77466278 | Msa0045510:CDS |
| AAAATTAATTCAGCTTGTCA+AGG | 0.524836 | 1_1:-77464654 | Msa0045510:CDS |
| AGTTTGAGGAAGTCAGAAAT+CGG | 0.525711 | 1_1:-77463545 | Msa0045510:CDS |
| CTTAAGTCTTTCCGTTATCG+TGG | 0.528513 | 1_1:-77465766 | Msa0045510:CDS |
| TAATTTCAAGAAGGAGACTA+AGG | 0.531430 | 1_1:+77465213 | None:intergenic |
| TCTGGCCAAATCTGAGGAAG+AGG | 0.536823 | 1_1:+77465742 | None:intergenic |
| CCAAAGATAGAGACGTCAAG+TGG | 0.542130 | 1_1:-77464623 | Msa0045510:CDS |
| GTCTGAAATCAAGGATGGCA+TGG | 0.544813 | 1_1:+77465701 | None:intergenic |
| GAACTTCCAACTTTCAACAC+TGG | 0.547278 | 1_1:-77463485 | Msa0045510:CDS |
| TTAACGATCACCGATTGTTG+TGG | 0.551205 | 1_1:-77465886 | Msa0045510:CDS |
| GCCATCCTTGATTTCAGACA+AGG | 0.553581 | 1_1:-77465697 | Msa0045510:CDS |
| GACGAGGAAAACAGAATGGA+AGG | 0.554694 | 1_1:+77465993 | None:intergenic |
| GGTTACCAATTGGACGCCAT+CGG | 0.566183 | 1_1:-77463381 | Msa0045510:CDS |
| ACAACAGAAGCAGAAGCGTA+TGG | 0.572632 | 1_1:+77463722 | None:intergenic |
| AAATTAATTCAGCTTGTCAA+GGG | 0.577778 | 1_1:-77464653 | Msa0045510:CDS |
| CCATCAATTTCTCCTTCGAG+TGG | 0.585332 | 1_1:-77465307 | Msa0045510:CDS |
| TGAGATTCTGGCCAAATCTG+AGG | 0.585377 | 1_1:+77465736 | None:intergenic |
| AATATAAAACTTCCACTCGA+AGG | 0.588557 | 1_1:+77465295 | None:intergenic |
| CAGACAAGGGCTAAGCTGCA+GGG | 0.594671 | 1_1:-77465683 | Msa0045510:CDS |
| CAGAAAGTTGCTCCAATGCA+GGG | 0.595504 | 1_1:+77465188 | None:intergenic |
| AATCAAGTTCTTGTCAAACA+TGG | 0.599066 | 1_1:-77466240 | Msa0045510:CDS |
| ATTGGAGCAACTTTCTGTAA+CGG | 0.601485 | 1_1:-77465182 | Msa0045510:intron |
| TCAAGCATGCACACCATGGA+TGG | 0.601770 | 1_1:+77463685 | None:intergenic |
| CCACCTAGTAGATATGAGGC+TGG | 0.603197 | 1_1:+77466275 | None:intergenic |
| ATTAAGCTATTTGACAAGTG+AGG | 0.604260 | 1_1:-77465950 | Msa0045510:CDS |
| CCCTTGTCTGAAATCAAGGA+TGG | 0.606066 | 1_1:+77465696 | None:intergenic |
| AATGGATTGTATGCAGATTG+TGG | 0.608740 | 1_1:+77463805 | None:intergenic |
| TGCAGGGCATAATTTCAAGA+AGG | 0.623371 | 1_1:+77465204 | None:intergenic |
| AAGCAGAAGCGTATGGAATG+TGG | 0.624892 | 1_1:+77463729 | None:intergenic |
| GGAACTATAGAAGATATCAC+TGG | 0.627429 | 1_1:-77466219 | Msa0045510:CDS |
| TCCAATAGCTGAAATTTCAG+TGG | 0.627581 | 1_1:-77464681 | Msa0045510:CDS |
| CTGGAAAATACGGTTACCGA+TGG | 0.631688 | 1_1:-77463466 | Msa0045510:CDS |
| CTGGGAGCTAGAAGCCACAA+AGG | 0.640249 | 1_1:-77463580 | Msa0045510:intron |
| CCATCCTTGATTTCAGACAA+GGG | 0.643441 | 1_1:-77465696 | Msa0045510:CDS |
| TATAGAAGATATCACTGGTG+TGG | 0.649557 | 1_1:-77466214 | Msa0045510:CDS |
| AAGTGAAATTGAAGCTTGCG+TGG | 0.653797 | 1_1:+77466144 | None:intergenic |
| GAATGTGGCAAGCACTGTAG+TGG | 0.663236 | 1_1:+77463744 | None:intergenic |
| CAAAGATAGAGACGTCAAGT+GGG | 0.665557 | 1_1:-77464622 | Msa0045510:CDS |
| GGAGCTAGAAGCCACAAAGG+AGG | 0.669376 | 1_1:-77463577 | Msa0045510:intron |
| ATTGAGCCTAAATTTGACTG+CGG | 0.678034 | 1_1:+77464767 | None:intergenic |
| CCAGCCTCATATCTACTAGG+TGG | 0.679083 | 1_1:-77466275 | Msa0045510:CDS |
| AAGTTCAGCAGCAAAATCGG+TGG | 0.707605 | 1_1:+77463502 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAACAAAATTATACAA+AGG | + | chr1_1:77465658-77465677 | None:intergenic | 10.0% |
| !! | AAAAAAAAAATCATAACATT+CGG | + | chr1_1:77465685-77465704 | None:intergenic | 10.0% |
| !!! | TCATTTTTTTAAAGTATTCT+AGG | - | chr1_1:77465342-77465361 | Msa0045510:intron | 15.0% |
| !!! | CATTTTTTTAAAGTATTCTA+GGG | - | chr1_1:77465343-77465362 | Msa0045510:intron | 15.0% |
| !! | TTTCTTTATAACTATATGAA+TGG | - | chr1_1:77465384-77465403 | Msa0045510:intron | 15.0% |
| !!! | TCATTTTTTTAAAGTATTCT+AGG | - | chr1_1:77465342-77465361 | Msa0045510:intron | 15.0% |
| !!! | CATTTTTTTAAAGTATTCTA+GGG | - | chr1_1:77465343-77465362 | Msa0045510:intron | 15.0% |
| !! | TTTCTTTATAACTATATGAA+TGG | - | chr1_1:77465384-77465403 | Msa0045510:intron | 15.0% |
| !! | TGACATATAATAAAAAATAC+AGG | - | chr1_1:77465751-77465770 | Msa0045510:CDS | 15.0% |
| !! | GACATATAATAAAAAATACA+GGG | - | chr1_1:77465752-77465771 | Msa0045510:CDS | 15.0% |
| !!! | TTCTTCTTGTTTTTTCTTAT+GGG | - | chr1_1:77463662-77463681 | Msa0045510:intron | 20.0% |
| !! | TTAACTCAAAAACTTTAAGT+AGG | + | chr1_1:77464594-77464613 | None:intergenic | 20.0% |
| !!! | ACTTATTTTCATAAACTCTT+TGG | - | chr1_1:77464694-77464713 | Msa0045510:CDS | 20.0% |
| !! | TTATGATTTCATAAACTCTT+TGG | - | chr1_1:77464723-77464742 | Msa0045510:CDS | 20.0% |
| !! | TAGAAAAACAGAGTAATTAA+GGG | + | chr1_1:77464846-77464865 | None:intergenic | 20.0% |
| !! | AAATAAAACAAGATCTACAA+AGG | + | chr1_1:77465314-77465333 | None:intergenic | 20.0% |
| !! | AAATAAAACAAGATCTACAA+AGG | + | chr1_1:77465314-77465333 | None:intergenic | 20.0% |
| !!! | CTTCTTCTTGTTTTTTCTTA+TGG | - | chr1_1:77463661-77463680 | Msa0045510:intron | 25.0% |
| !!! | TCTTCTTGTTTTTTCTTATG+GGG | - | chr1_1:77463663-77463682 | Msa0045510:intron | 25.0% |
| ! | TTCTTCAATCGTTTCAAATT+TGG | - | chr1_1:77463813-77463832 | Msa0045510:CDS | 25.0% |
| !!! | TAAGTTTAGAAGTTCTAAGA+TGG | + | chr1_1:77463954-77463973 | None:intergenic | 25.0% |
| ! | AAGAACTTCAGAATTCTTTA+TGG | + | chr1_1:77464115-77464134 | None:intergenic | 25.0% |
| ! | AAGTTCTTACTTTATGTGAA+TGG | - | chr1_1:77464127-77464146 | Msa0045510:intron | 25.0% |
| ! | TCTATAAATTGAGAGAGTTA+TGG | - | chr1_1:77464463-77464482 | Msa0045510:intron | 25.0% |
| ! | TTATCTACTCGCATAAATAT+TGG | - | chr1_1:77464625-77464644 | Msa0045510:CDS | 25.0% |
| !! | TTTGGAATAGCTTATGAAAA+CGG | - | chr1_1:77464741-77464760 | Msa0045510:CDS | 25.0% |
| ! | GTAGAAAAACAGAGTAATTA+AGG | + | chr1_1:77464847-77464866 | None:intergenic | 25.0% |
| !!! | ACTTGATTTGATGTTTTTGA+CGG | - | chr1_1:77464897-77464916 | Msa0045510:intron | 25.0% |
| !! | AGAATTAGAGCATCTAAAAT+TGG | - | chr1_1:77465010-77465029 | Msa0045510:intron | 25.0% |
| !! | TCTAAAATTGGTAAAGTTCA+AGG | - | chr1_1:77465022-77465041 | Msa0045510:intron | 25.0% |
| ! | CTAAAATTGGTAAAGTTCAA+GGG | - | chr1_1:77465023-77465042 | Msa0045510:intron | 25.0% |
| ! | AAAATTAATTCAGCTTGTCA+AGG | - | chr1_1:77465082-77465101 | Msa0045510:intron | 25.0% |
| ! | AAATTAATTCAGCTTGTCAA+GGG | - | chr1_1:77465083-77465102 | Msa0045510:intron | 25.0% |
| !! | ACGAATCTAGATTTGAATTT+TGG | + | chr1_1:77465243-77465262 | None:intergenic | 25.0% |
| ! | TAGTTATAAAGAAAGACAAC+TGG | + | chr1_1:77465378-77465397 | None:intergenic | 25.0% |
| ! | TAGTTATAAAGAAAGACAAC+TGG | + | chr1_1:77465378-77465397 | None:intergenic | 25.0% |
| ! | AAGTATGATCAATAAGTCTA+AGG | + | chr1_1:77465883-77465902 | None:intergenic | 25.0% |
| !!! | GCACTTTTTATGTAATGTTT+GGG | - | chr1_1:77466116-77466135 | Msa0045510:CDS | 25.0% |
| !!! | GTCATTTTTGATGTAATTCT+GGG | - | chr1_1:77466138-77466157 | Msa0045510:CDS | 25.0% |
| TATTTGCCAGATGAAATTCT+AGG | - | chr1_1:77463397-77463416 | Msa0045510:CDS | 30.0% | |
| ! | GTTTCAAGTGCATATTCATT+TGG | + | chr1_1:77463442-77463461 | None:intergenic | 30.0% |
| AATCAAGTTCTTGTCAAACA+TGG | - | chr1_1:77463496-77463515 | Msa0045510:CDS | 30.0% | |
| TGGATCTAAATCGTCAAAAT+TGG | + | chr1_1:77463563-77463582 | None:intergenic | 30.0% | |
| ATTAAGCTATTTGACAAGTG+AGG | - | chr1_1:77463786-77463805 | Msa0045510:CDS | 30.0% | |
| !! | TTTATGTGAATGGACTTTTG+AGG | - | chr1_1:77464137-77464156 | Msa0045510:intron | 30.0% |
| ATACCAGCAATAGTTTAAGA+TGG | + | chr1_1:77464181-77464200 | None:intergenic | 30.0% | |
| AATATAAAACTTCCACTCGA+AGG | + | chr1_1:77464444-77464463 | None:intergenic | 30.0% | |
| ATAAATTGAGAGAGTTATGG+TGG | - | chr1_1:77464466-77464485 | Msa0045510:intron | 30.0% | |
| TAATTTCAAGAAGGAGACTA+AGG | + | chr1_1:77464526-77464545 | None:intergenic | 30.0% | |
| ACGGTTATATCATACTTGAT+TGG | - | chr1_1:77464916-77464935 | Msa0045510:intron | 30.0% | |
| GATTAGGTAGAAGGAATTTA+AGG | + | chr1_1:77465176-77465195 | None:intergenic | 30.0% | |
| CTCAAATATGATTAGGTAGA+AGG | + | chr1_1:77465185-77465204 | None:intergenic | 30.0% | |
| AATGCGTCTCAAATATGATT+AGG | + | chr1_1:77465192-77465211 | None:intergenic | 30.0% | |
| GACGCATTAGACATTAAATA+TGG | - | chr1_1:77465204-77465223 | Msa0045510:CDS | 30.0% | |
| !! | ATCTAGATTTGAATTTTGGC+TGG | + | chr1_1:77465239-77465258 | None:intergenic | 30.0% |
| !! | ACAACTTTTTCTATCGGAAA+TGG | + | chr1_1:77465284-77465303 | None:intergenic | 30.0% |
| !! | TAAGCGACAACTTTTTCTAT+CGG | + | chr1_1:77465290-77465309 | None:intergenic | 30.0% |
| !! | ACAACTTTTTCTATCGGAAA+TGG | + | chr1_1:77465284-77465303 | None:intergenic | 30.0% |
| !! | TAAGCGACAACTTTTTCTAT+CGG | + | chr1_1:77465290-77465309 | None:intergenic | 30.0% |
| ! | GGTAACTTTGTACTTTTGTT+AGG | + | chr1_1:77465835-77465854 | None:intergenic | 30.0% |
| AATCCATTTCGATCTGAATA+TGG | - | chr1_1:77465946-77465965 | Msa0045510:CDS | 30.0% | |
| CCTAATAAACTAAGATGACA+AGG | + | chr1_1:77466097-77466116 | None:intergenic | 30.0% | |
| CCTTGTCATCTTAGTTTATT+AGG | - | chr1_1:77466094-77466113 | Msa0045510:CDS | 30.0% | |
| !! | GGCACTTTTTATGTAATGTT+TGG | - | chr1_1:77466115-77466134 | Msa0045510:CDS | 30.0% |
| !!! | GGTCATTTTTGATGTAATTC+TGG | - | chr1_1:77466137-77466156 | Msa0045510:CDS | 30.0% |
| !! | TATTTTCCAGTGTTGAAAGT+TGG | + | chr1_1:77466260-77466279 | None:intergenic | 30.0% |
| ACTTTCAACACTGGAAAATA+CGG | - | chr1_1:77466260-77466279 | Msa0045510:CDS | 30.0% | |
| GGAACTATAGAAGATATCAC+TGG | - | chr1_1:77463517-77463536 | Msa0045510:CDS | 35.0% | |
| TATAGAAGATATCACTGGTG+TGG | - | chr1_1:77463522-77463541 | Msa0045510:CDS | 35.0% | |
| ! | TTTTGACGAGGAAAACAGAA+TGG | + | chr1_1:77463750-77463769 | None:intergenic | 35.0% |
| ! | TCAAATAGAGACTTTTGACG+AGG | + | chr1_1:77463762-77463781 | None:intergenic | 35.0% |
| AGATTGCAATCCACAACAAT+CGG | + | chr1_1:77463863-77463882 | None:intergenic | 35.0% | |
| ! | CACAAGTTGAAATGAGATTC+TGG | + | chr1_1:77464015-77464034 | None:intergenic | 35.0% |
| TTGCCATCTTAAACTATTGC+TGG | - | chr1_1:77464175-77464194 | Msa0045510:intron | 35.0% | |
| TATCAGTGTCTGCAAGAATT+TGG | + | chr1_1:77464406-77464425 | None:intergenic | 35.0% | |
| AATTCTTGCAGACACTGATA+TGG | - | chr1_1:77464406-77464425 | Msa0045510:intron | 35.0% | |
| !!! | TGATGCTGTTTTCATTCTCA+TGG | + | chr1_1:77464500-77464519 | None:intergenic | 35.0% |
| ATTGGAGCAACTTTCTGTAA+CGG | - | chr1_1:77464554-77464573 | Msa0045510:intron | 35.0% | |
| TCTACTCGCATAAATATTGG+TGG | - | chr1_1:77464628-77464647 | Msa0045510:CDS | 35.0% | |
| CTACTCGCATAAATATTGGT+GGG | - | chr1_1:77464629-77464648 | Msa0045510:CDS | 35.0% | |
| ATTGAGCCTAAATTTGACTG+CGG | + | chr1_1:77464972-77464991 | None:intergenic | 35.0% | |
| TCCAATAGCTGAAATTTCAG+TGG | - | chr1_1:77465055-77465074 | Msa0045510:intron | 35.0% | |
| AATCTAGATTCGTCACATTG+CGG | - | chr1_1:77465250-77465269 | Msa0045510:CDS | 35.0% | |
| AATCTAGATTCGTCACATTG+CGG | - | chr1_1:77465250-77465269 | Msa0045510:CDS | 35.0% | |
| ! | AAAAATACAGGGACTAGCAT+AGG | - | chr1_1:77465763-77465782 | Msa0045510:CDS | 35.0% |
| ATCGAGTAGCTCGTTAATTA+GGG | + | chr1_1:77465802-77465821 | None:intergenic | 35.0% | |
| AATCGAGTAGCTCGTTAATT+AGG | + | chr1_1:77465803-77465822 | None:intergenic | 35.0% | |
| TGCTAATCAACACCATCTTT+CGG | + | chr1_1:77465857-77465876 | None:intergenic | 35.0% | |
| !! | AATGGATTGTATGCAGATTG+TGG | + | chr1_1:77465934-77465953 | None:intergenic | 35.0% |
| TCACCATATTCAGATCGAAA+TGG | + | chr1_1:77465952-77465971 | None:intergenic | 35.0% | |
| AGTTTGAGGAAGTCAGAAAT+CGG | - | chr1_1:77466191-77466210 | Msa0045510:CDS | 35.0% | |
| !! | ATGTTCTGGATCGCTATTTT+GGG | - | chr1_1:77466317-77466336 | Msa0045510:CDS | 35.0% |
| ATGCAGCCTAGAATTTCATC+TGG | + | chr1_1:77463406-77463425 | None:intergenic | 40.0% | |
| AAACCAGCCTCATATCTACT+AGG | - | chr1_1:77463458-77463477 | Msa0045510:CDS | 40.0% | |
| AAGTGAAATTGAAGCTTGCG+TGG | + | chr1_1:77463595-77463614 | None:intergenic | 40.0% | |
| ! | TTAACGATCACCGATTGTTG+TGG | - | chr1_1:77463850-77463869 | Msa0045510:intron | 40.0% |
| ACTTCAACTGCAAGCAATCT+AGG | + | chr1_1:77463927-77463946 | None:intergenic | 40.0% | |
| CTTAAGTCTTTCCGTTATCG+TGG | - | chr1_1:77463970-77463989 | Msa0045510:intron | 40.0% | |
| CCATCCTTGATTTCAGACAA+GGG | - | chr1_1:77464040-77464059 | Msa0045510:intron | 40.0% | |
| ! | TTAGCCCTTGTCTGAAATCA+AGG | + | chr1_1:77464047-77464066 | None:intergenic | 40.0% |
| ! | ACACTTTCAATCTGGAGTGT+CGG | + | chr1_1:77464237-77464256 | None:intergenic | 40.0% |
| TGCAGGGCATAATTTCAAGA+AGG | + | chr1_1:77464535-77464554 | None:intergenic | 40.0% | |
| CTTGAAATTATGCCCTGCAT+TGG | - | chr1_1:77464536-77464555 | Msa0045510:intron | 40.0% | |
| GCCACTGAAATTTCAGCTAT+TGG | + | chr1_1:77465059-77465078 | None:intergenic | 40.0% | |
| CAAAGATAGAGACGTCAAGT+GGG | - | chr1_1:77465114-77465133 | Msa0045510:intron | 40.0% | |
| AGTAGCTCGTTAATTAGGGA+GGG | + | chr1_1:77465798-77465817 | None:intergenic | 40.0% | |
| GTACAAAGTTACCCGAAAGA+TGG | - | chr1_1:77465842-77465861 | Msa0045510:CDS | 40.0% | |
| GCTAATCAACACCATCTTTC+GGG | + | chr1_1:77465856-77465875 | None:intergenic | 40.0% | |
| CACTGTAGTGGCTATAATTC+TGG | + | chr1_1:77465983-77466002 | None:intergenic | 40.0% | |
| ! | CTTCTGCTTCTGTTGTTGTT+GGG | - | chr1_1:77466021-77466040 | Msa0045510:CDS | 40.0% |
| GTGTGCATGCTTGAATCATT+TGG | - | chr1_1:77466060-77466079 | Msa0045510:CDS | 40.0% | |
| ! | CTTGTGTTTTTCCTCCTTTG+TGG | + | chr1_1:77466173-77466192 | None:intergenic | 40.0% |
| GGAGGAAAAACACAAGTTTG+AGG | - | chr1_1:77466177-77466196 | Msa0045510:CDS | 40.0% | |
| CGGTGGCTGATTGAAAATAT+CGG | + | chr1_1:77466220-77466239 | None:intergenic | 40.0% | |
| TGGAAGTTCAGCAGCAAAAT+CGG | + | chr1_1:77466240-77466259 | None:intergenic | 40.0% | |
| GAACTTCCAACTTTCAACAC+TGG | - | chr1_1:77466251-77466270 | Msa0045510:CDS | 40.0% | |
| !! | CATGTTCTGGATCGCTATTT+TGG | - | chr1_1:77466316-77466335 | Msa0045510:CDS | 40.0% |
| !! | ATCGCTATTTTGGGCTTAAG+TGG | - | chr1_1:77466326-77466345 | Msa0045510:CDS | 40.0% |
| !! | TCGCTATTTTGGGCTTAAGT+GGG | - | chr1_1:77466327-77466346 | Msa0045510:CDS | 40.0% |
| CTCTCCACCTAGTAGATATG+AGG | + | chr1_1:77463468-77463487 | None:intergenic | 45.0% | |
| CTACTAGGTGGAGAGACTTA+TGG | - | chr1_1:77463473-77463492 | Msa0045510:CDS | 45.0% | |
| ! | AGCTTGCGTGGTTGCTTTAA+TGG | + | chr1_1:77463583-77463602 | None:intergenic | 45.0% |
| GACGAGGAAAACAGAATGGA+AGG | + | chr1_1:77463746-77463765 | None:intergenic | 45.0% | |
| TGAGATTCTGGCCAAATCTG+AGG | + | chr1_1:77464003-77464022 | None:intergenic | 45.0% | |
| ! | GTCTGAAATCAAGGATGGCA+TGG | + | chr1_1:77464038-77464057 | None:intergenic | 45.0% |
| GCCATCCTTGATTTCAGACA+AGG | - | chr1_1:77464039-77464058 | Msa0045510:intron | 45.0% | |
| ! | CCCTTGTCTGAAATCAAGGA+TGG | + | chr1_1:77464043-77464062 | None:intergenic | 45.0% |
| ! | CTCCAGATTGAAAGTGTGTC+TGG | - | chr1_1:77464240-77464259 | Msa0045510:intron | 45.0% |
| CACCAGACACACTTTCAATC+TGG | + | chr1_1:77464245-77464264 | None:intergenic | 45.0% | |
| CCACTCGAAGGAGAAATTGA+TGG | + | chr1_1:77464432-77464451 | None:intergenic | 45.0% | |
| CCATCAATTTCTCCTTCGAG+TGG | - | chr1_1:77464429-77464448 | Msa0045510:intron | 45.0% | |
| CAGAAAGTTGCTCCAATGCA+GGG | + | chr1_1:77464551-77464570 | None:intergenic | 45.0% | |
| ACAGAAAGTTGCTCCAATGC+AGG | + | chr1_1:77464552-77464571 | None:intergenic | 45.0% | |
| GAGCAACTTTCTGTAACGGT+AGG | - | chr1_1:77464558-77464577 | Msa0045510:intron | 45.0% | |
| TCTGCTCCGCAGTCAAATTT+AGG | - | chr1_1:77464963-77464982 | Msa0045510:intron | 45.0% | |
| CTTGACGTCTCTATCTTTGG+AGG | + | chr1_1:77465113-77465132 | None:intergenic | 45.0% | |
| CCACTTGACGTCTCTATCTT+TGG | + | chr1_1:77465116-77465135 | None:intergenic | 45.0% | |
| CCAAAGATAGAGACGTCAAG+TGG | - | chr1_1:77465113-77465132 | Msa0045510:intron | 45.0% | |
| GAGTAGCTCGTTAATTAGGG+AGG | + | chr1_1:77465799-77465818 | None:intergenic | 45.0% | |
| TTGATCATACTTCCTGCTGC+AGG | - | chr1_1:77465891-77465910 | Msa0045510:CDS | 45.0% | |
| TGATCATACTTCCTGCTGCA+GGG | - | chr1_1:77465892-77465911 | Msa0045510:CDS | 45.0% | |
| GTTTATTACAACCCTGCAGC+AGG | + | chr1_1:77465906-77465925 | None:intergenic | 45.0% | |
| ! | AAGCAGAAGCGTATGGAATG+TGG | + | chr1_1:77466010-77466029 | None:intergenic | 45.0% |
| ! | ACAACAGAAGCAGAAGCGTA+TGG | + | chr1_1:77466017-77466036 | None:intergenic | 45.0% |
| GCTTCTGCTTCTGTTGTTGT+TGG | - | chr1_1:77466020-77466039 | Msa0045510:CDS | 45.0% | |
| TGATTCAAGCATGCACACCA+TGG | + | chr1_1:77466058-77466077 | None:intergenic | 45.0% | |
| AAGTTCAGCAGCAAAATCGG+TGG | + | chr1_1:77466237-77466256 | None:intergenic | 45.0% | |
| CTGGAAAATACGGTTACCGA+TGG | - | chr1_1:77466270-77466289 | Msa0045510:CDS | 45.0% | |
| GGTTACCGATGGCCAAAAAT+CGG | - | chr1_1:77466281-77466300 | Msa0045510:CDS | 45.0% | |
| !! | CAGAATCGGTAGCCGATTTT+TGG | + | chr1_1:77466296-77466315 | None:intergenic | 45.0% |
| CGATCCAGAACATGCAGAAT+CGG | + | chr1_1:77466310-77466329 | None:intergenic | 45.0% | |
| TTTGGGCTTAAGTGGGCAAT+CGG | - | chr1_1:77466334-77466353 | Msa0045510:CDS | 45.0% | |
| CCACCTAGTAGATATGAGGC+TGG | + | chr1_1:77463464-77463483 | None:intergenic | 50.0% | |
| CCAGCCTCATATCTACTAGG+TGG | - | chr1_1:77463461-77463480 | Msa0045510:CDS | 50.0% | |
| GAGGAAGAGGTCCACGATAA+CGG | + | chr1_1:77463984-77464003 | None:intergenic | 50.0% | |
| GTGGACCTCTTCCTCAGATT+TGG | - | chr1_1:77463989-77464008 | Msa0045510:intron | 50.0% | |
| TCTGGCCAAATCTGAGGAAG+AGG | + | chr1_1:77463997-77464016 | None:intergenic | 50.0% | |
| TGTCGAATACCGACACGTGT+CGG | + | chr1_1:77464269-77464288 | None:intergenic | 50.0% | |
| GACGTCAAGTGGGAGCAATT+TGG | - | chr1_1:77465124-77465143 | Msa0045510:intron | 50.0% | |
| ! | GAATGTGGCAAGCACTGTAG+TGG | + | chr1_1:77465995-77466014 | None:intergenic | 50.0% |
| TCAAGCATGCACACCATGGA+TGG | + | chr1_1:77466054-77466073 | None:intergenic | 50.0% | |
| !!! | GGTAGCCGATTTTTGGCCAT+CGG | + | chr1_1:77466289-77466308 | None:intergenic | 50.0% |
| !! | GCTACCGATTCTGCATGTTC+TGG | - | chr1_1:77466303-77466322 | Msa0045510:CDS | 50.0% |
| GTGGGCAATCGGTTACCAAT+TGG | - | chr1_1:77466345-77466364 | Msa0045510:CDS | 50.0% | |
| GGTTACCAATTGGACGCCAT+CGG | - | chr1_1:77466355-77466374 | Msa0045510:CDS | 50.0% | |
| TCAGACAAGGGCTAAGCTGC+AGG | - | chr1_1:77464052-77464071 | Msa0045510:intron | 55.0% | |
| CAGACAAGGGCTAAGCTGCA+GGG | - | chr1_1:77464053-77464072 | Msa0045510:intron | 55.0% | |
| CTGGGAGCTAGAAGCCACAA+AGG | - | chr1_1:77466156-77466175 | Msa0045510:CDS | 55.0% | |
| GGAGCTAGAAGCCACAAAGG+AGG | - | chr1_1:77466159-77466178 | Msa0045510:CDS | 55.0% | |
| GGTTACCGATGGCGTCCAAT+TGG | + | chr1_1:77466363-77466382 | None:intergenic | 55.0% | |
| GTCTGGTGTCCGACACGTGT+CGG | - | chr1_1:77464257-77464276 | Msa0045510:intron | 60.0% | |
| GTTGGGCTTCCTGCCATCCA+TGG | - | chr1_1:77466038-77466057 | Msa0045510:CDS | 60.0% | |
| GCATGCACACCATGGATGGC+AGG | + | chr1_1:77466050-77466069 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 77463367 | 77466391 | 77463367 | ID=Msa0045510;Name=Msa0045510 |
| chr1_1 | mRNA | 77463367 | 77466391 | 77463367 | ID=Msa0045510-mRNA-1;Parent=Msa0045510;Name=Msa0045510-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.6|1|1|5|0|508 |
| chr1_1 | exon | 77465600 | 77466391 | 77465600 | ID=Msa0045510-mRNA-1:exon:26481;Parent=Msa0045510-mRNA-1 |
| chr1_1 | exon | 77465183 | 77465341 | 77465183 | ID=Msa0045510-mRNA-1:exon:26480;Parent=Msa0045510-mRNA-1 |
| chr1_1 | exon | 77464610 | 77464813 | 77464610 | ID=Msa0045510-mRNA-1:exon:26479;Parent=Msa0045510-mRNA-1 |
| chr1_1 | exon | 77463699 | 77463845 | 77463699 | ID=Msa0045510-mRNA-1:exon:26478;Parent=Msa0045510-mRNA-1 |
| chr1_1 | exon | 77463367 | 77463591 | 77463367 | ID=Msa0045510-mRNA-1:exon:26477;Parent=Msa0045510-mRNA-1 |
| chr1_1 | CDS | 77465600 | 77466391 | 77465600 | ID=Msa0045510-mRNA-1:cds;Parent=Msa0045510-mRNA-1 |
| chr1_1 | CDS | 77465183 | 77465341 | 77465183 | ID=Msa0045510-mRNA-1:cds;Parent=Msa0045510-mRNA-1 |
| chr1_1 | CDS | 77464610 | 77464813 | 77464610 | ID=Msa0045510-mRNA-1:cds;Parent=Msa0045510-mRNA-1 |
| chr1_1 | CDS | 77463699 | 77463845 | 77463699 | ID=Msa0045510-mRNA-1:cds;Parent=Msa0045510-mRNA-1 |
| chr1_1 | CDS | 77463367 | 77463591 | 77463367 | ID=Msa0045510-mRNA-1:cds;Parent=Msa0045510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
