Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376210 | XP_013470445.1 | 92.308 | 390 | 30 | 0 | 1 | 390 | 1 | 390 | 0.0 | 737 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376210 | sp|Q5S4V7|FB129_ARATH | 44.282 | 341 | 179 | 7 | 20 | 352 | 20 | 357 | 4.05e-75 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376210 | A0A072VST6 | 92.308 | 390 | 30 | 0 | 1 | 390 | 1 | 390 | 0.0 | 737 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045510 | Msa1376210 | 0.959894 | 6.008915e-118 | -8.615850e-47 |
| Msa1371670 | Msa1376210 | 0.964955 | 5.536209e-124 | -8.615850e-47 |
| Msa0484870 | Msa1376210 | 0.807600 | 4.669513e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376210 | MtrunA17_Chr1g0212661 | 92.308 | 390 | 30 | 0 | 1 | 390 | 1 | 390 | 0.0 | 737 |
| Msa1376210 | MtrunA17_Chr7g0222801 | 63.198 | 394 | 133 | 4 | 2 | 385 | 4 | 395 | 1.13e-166 | 472 |
| Msa1376210 | MtrunA17_Chr1g0212641 | 80.000 | 135 | 24 | 1 | 99 | 230 | 10 | 144 | 1.04e-67 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376210 | AT2G39490.1 | 44.282 | 341 | 179 | 7 | 20 | 352 | 20 | 357 | 4.12e-76 | 241 |
Find 63 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAACTTCAGAATTCTTTA+TGG | 0.162628 | tig0019789:+31627 | None:intergenic |
| TTCTTCAGTCGTTTCAAATT+TGG | 0.181923 | tig0019789:-31926 | Msa1376210:CDS |
| GCCACTGAAATTTCAGCTAT+TGG | 0.231284 | tig0019789:+30683 | None:intergenic |
| CCACTTGACGTCTCTATCTT+TGG | 0.252261 | tig0019789:+30626 | None:intergenic |
| AGAATTAGAGCATCTAAAAT+TGG | 0.265224 | tig0019789:-30729 | Msa1376210:CDS |
| TGGATCTAAATCGTCAAAAT+TGG | 0.275752 | tig0019789:+32179 | None:intergenic |
| AGCTTGCGTGGTTGCTTTAA+TGG | 0.277566 | tig0019789:+32159 | None:intergenic |
| TCTGCTCCGCAGTCAAATTT+AGG | 0.329512 | tig0019789:-30776 | Msa1376210:CDS |
| CACAAGTTGAAATGAGATTC+TGG | 0.342737 | tig0019789:+31727 | None:intergenic |
| TATTTGCCAGATGAAATTCT+AGG | 0.345450 | tig0019789:-32342 | Msa1376210:CDS |
| ACTTCAACTGCAAGCAATCT+AGG | 0.370790 | tig0019789:+31815 | None:intergenic |
| GTGGACCTCTTCCTCAGATT+TGG | 0.372608 | tig0019789:-31750 | Msa1376210:CDS |
| AATTCTTGCAGACACTGATA+TGG | 0.376690 | tig0019789:-31333 | Msa1376210:intron |
| TCTAAAATTGGTAAAGTTCA+AGG | 0.381812 | tig0019789:-30717 | Msa1376210:CDS |
| AAGTTCTTACTTTATGTGAA+TGG | 0.384442 | tig0019789:-31612 | Msa1376210:CDS |
| CTACTAGGTGGAGAGACTTA+TGG | 0.390498 | tig0019789:-32266 | Msa1376210:CDS |
| GTTTCAAGTGCATATTCATT+TGG | 0.422873 | tig0019789:+32300 | None:intergenic |
| GACGTCAAGTGGGAGCAATT+TGG | 0.426674 | tig0019789:-30615 | Msa1376210:CDS |
| TCAGACAAGGGCTAAGCTGC+AGG | 0.433267 | tig0019789:-31687 | Msa1376210:CDS |
| TAAGTTTAGAAGTTCTAAGA+TGG | 0.451127 | tig0019789:+31788 | None:intergenic |
| TCTATAAATTGAGAGAGTTA+TGG | 0.451792 | tig0019789:-31276 | Msa1376210:CDS |
| TTAGCCCTTGTCTGAAATCA+AGG | 0.468763 | tig0019789:+31695 | None:intergenic |
| CTTGACGTCTCTATCTTTGG+AGG | 0.472938 | tig0019789:+30629 | None:intergenic |
| ACAGAAAGTTGCTCCAATGC+AGG | 0.473084 | tig0019789:+31190 | None:intergenic |
| CTTGAAATTATGCCCTGCAT+TGG | 0.474163 | tig0019789:-31203 | Msa1376210:CDS |
| CTCTCCACCTAGTAGATATG+AGG | 0.477554 | tig0019789:+32274 | None:intergenic |
| ATGCAGCCTAGAATTTCATC+TGG | 0.480500 | tig0019789:+32336 | None:intergenic |
| ATTCTGAACACTTTCTTCCA+TGG | 0.490138 | tig0019789:+32374 | None:intergenic |
| CCACTCGAAGGAGAAATTGA+TGG | 0.492463 | tig0019789:+31310 | None:intergenic |
| CTAAAATTGGTAAAGTTCAA+GGG | 0.506831 | tig0019789:-30716 | Msa1376210:CDS |
| GAGGAAGAGGTCCACGATAA+CGG | 0.510369 | tig0019789:+31758 | None:intergenic |
| AGATTGCAATCCACAACAAT+CGG | 0.513328 | tig0019789:+31879 | None:intergenic |
| ATAAATTGAGAGAGTTATGG+TGG | 0.517963 | tig0019789:-31273 | Msa1376210:CDS |
| AAACCAGCCTCATATCTACT+AGG | 0.521704 | tig0019789:-32281 | Msa1376210:CDS |
| AAAATTAATTCAGCTTGTCA+AGG | 0.524836 | tig0019789:-30657 | Msa1376210:CDS |
| CTTAAGTCTTTCCGTTATCG+TGG | 0.528513 | tig0019789:-31769 | Msa1376210:CDS |
| TAATTTCAAGAAGGAGACTA+AGG | 0.531430 | tig0019789:+31216 | None:intergenic |
| TCTGGCCAAATCTGAGGAAG+AGG | 0.536823 | tig0019789:+31745 | None:intergenic |
| CCAAAGATAGAGACGTCAAG+TGG | 0.542130 | tig0019789:-30626 | Msa1376210:CDS |
| GTCTGAAATCAAGGATGGCA+TGG | 0.544813 | tig0019789:+31704 | None:intergenic |
| TTAACGATCACCGATTGTTG+TGG | 0.551205 | tig0019789:-31889 | Msa1376210:CDS |
| GCCATCCTTGATTTCAGACA+AGG | 0.553581 | tig0019789:-31700 | Msa1376210:CDS |
| GACGAGGAAAACAGAATGGA+AGG | 0.554694 | tig0019789:+31996 | None:intergenic |
| AAATTAATTCAGCTTGTCAA+GGG | 0.577778 | tig0019789:-30656 | Msa1376210:CDS |
| CCATCAATTTCTCCTTCGAG+TGG | 0.585332 | tig0019789:-31310 | Msa1376210:CDS |
| TGAGATTCTGGCCAAATCTG+AGG | 0.585377 | tig0019789:+31739 | None:intergenic |
| AATATAAAACTTCCACTCGA+AGG | 0.588557 | tig0019789:+31298 | None:intergenic |
| CAGACAAGGGCTAAGCTGCA+GGG | 0.594671 | tig0019789:-31686 | Msa1376210:CDS |
| CAGAAAGTTGCTCCAATGCA+GGG | 0.595504 | tig0019789:+31191 | None:intergenic |
| AATCAAGTTCTTGTCAAACA+TGG | 0.599066 | tig0019789:-32243 | Msa1376210:CDS |
| ATTGGAGCAACTTTCTGTAA+CGG | 0.601485 | tig0019789:-31185 | Msa1376210:intron |
| CCACCTAGTAGATATGAGGC+TGG | 0.603197 | tig0019789:+32278 | None:intergenic |
| ATTAAGCTATTTGACAAGTG+AGG | 0.604260 | tig0019789:-31953 | Msa1376210:CDS |
| CCCTTGTCTGAAATCAAGGA+TGG | 0.606066 | tig0019789:+31699 | None:intergenic |
| TGCAGGGCATAATTTCAAGA+AGG | 0.623371 | tig0019789:+31207 | None:intergenic |
| GGAACTATAGAAGATATCAC+TGG | 0.627429 | tig0019789:-32222 | Msa1376210:CDS |
| TCCAATAGCTGAAATTTCAG+TGG | 0.627581 | tig0019789:-30684 | Msa1376210:CDS |
| CCATCCTTGATTTCAGACAA+GGG | 0.643441 | tig0019789:-31699 | Msa1376210:CDS |
| TATAGAAGATATCACTGGTG+TGG | 0.649557 | tig0019789:-32217 | Msa1376210:CDS |
| AAGTGAAATTGAAGCTTGCG+TGG | 0.653797 | tig0019789:+32147 | None:intergenic |
| CAAAGATAGAGACGTCAAGT+GGG | 0.665557 | tig0019789:-30625 | Msa1376210:CDS |
| ATTGAGCCTAAATTTGACTG+CGG | 0.678034 | tig0019789:+30770 | None:intergenic |
| CCAGCCTCATATCTACTAGG+TGG | 0.679083 | tig0019789:-32278 | Msa1376210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTCTTGTTTTTTCTTAT+GGG | - | tig0019789:30890-30909 | Msa1376210:intron | 20.0% |
| !! | TTAACTCAAAAACTTTAAGT+AGG | + | tig0019789:31822-31841 | None:intergenic | 20.0% |
| !!! | ACTTATTTTCATAAACTCTT+TGG | - | tig0019789:31922-31941 | Msa1376210:CDS | 20.0% |
| !! | TTATGATTTCATAAACTCTT+TGG | - | tig0019789:31951-31970 | Msa1376210:CDS | 20.0% |
| !! | TAGAAAAACAGAGTAATTAA+GGG | + | tig0019789:32074-32093 | None:intergenic | 20.0% |
| !!! | TTCTTCTTGTTTTTTCTTAT+GGG | - | tig0019789:30890-30909 | Msa1376210:intron | 20.0% |
| !! | TTAACTCAAAAACTTTAAGT+AGG | + | tig0019789:31822-31841 | None:intergenic | 20.0% |
| !!! | ACTTATTTTCATAAACTCTT+TGG | - | tig0019789:31922-31941 | Msa1376210:CDS | 20.0% |
| !! | TTATGATTTCATAAACTCTT+TGG | - | tig0019789:31951-31970 | Msa1376210:CDS | 20.0% |
| !! | TAGAAAAACAGAGTAATTAA+GGG | + | tig0019789:32074-32093 | None:intergenic | 20.0% |
| !!! | CTTCTTCTTGTTTTTTCTTA+TGG | - | tig0019789:30889-30908 | Msa1376210:intron | 25.0% |
| !!! | TCTTCTTGTTTTTTCTTATG+GGG | - | tig0019789:30891-30910 | Msa1376210:intron | 25.0% |
| !!! | TAAGTTTAGAAGTTCTAAGA+TGG | + | tig0019789:31182-31201 | None:intergenic | 25.0% |
| ! | AAGAACTTCAGAATTCTTTA+TGG | + | tig0019789:31343-31362 | None:intergenic | 25.0% |
| ! | AAGTTCTTACTTTATGTGAA+TGG | - | tig0019789:31355-31374 | Msa1376210:intron | 25.0% |
| ! | TCTATAAATTGAGAGAGTTA+TGG | - | tig0019789:31691-31710 | Msa1376210:CDS | 25.0% |
| ! | TTATCTACTCGCATAAATAT+TGG | - | tig0019789:31853-31872 | Msa1376210:CDS | 25.0% |
| !! | TTTGGAATAGCTTATGAAAA+CGG | - | tig0019789:31969-31988 | Msa1376210:CDS | 25.0% |
| ! | GTAGAAAAACAGAGTAATTA+AGG | + | tig0019789:32075-32094 | None:intergenic | 25.0% |
| !!! | ACTTGATTTGATGTTTTTGA+CGG | - | tig0019789:32125-32144 | Msa1376210:CDS | 25.0% |
| !! | AGAATTAGAGCATCTAAAAT+TGG | - | tig0019789:32238-32257 | Msa1376210:CDS | 25.0% |
| !! | TCTAAAATTGGTAAAGTTCA+AGG | - | tig0019789:32250-32269 | Msa1376210:CDS | 25.0% |
| ! | CTAAAATTGGTAAAGTTCAA+GGG | - | tig0019789:32251-32270 | Msa1376210:CDS | 25.0% |
| ! | AAAATTAATTCAGCTTGTCA+AGG | - | tig0019789:32310-32329 | Msa1376210:CDS | 25.0% |
| ! | AAATTAATTCAGCTTGTCAA+GGG | - | tig0019789:32311-32330 | Msa1376210:CDS | 25.0% |
| !!! | CTTCTTCTTGTTTTTTCTTA+TGG | - | tig0019789:30889-30908 | Msa1376210:intron | 25.0% |
| !!! | TCTTCTTGTTTTTTCTTATG+GGG | - | tig0019789:30891-30910 | Msa1376210:intron | 25.0% |
| !!! | TAAGTTTAGAAGTTCTAAGA+TGG | + | tig0019789:31182-31201 | None:intergenic | 25.0% |
| ! | AAGAACTTCAGAATTCTTTA+TGG | + | tig0019789:31343-31362 | None:intergenic | 25.0% |
| ! | AAGTTCTTACTTTATGTGAA+TGG | - | tig0019789:31355-31374 | Msa1376210:intron | 25.0% |
| ! | TCTATAAATTGAGAGAGTTA+TGG | - | tig0019789:31691-31710 | Msa1376210:CDS | 25.0% |
| ! | TTATCTACTCGCATAAATAT+TGG | - | tig0019789:31853-31872 | Msa1376210:CDS | 25.0% |
| !! | TTTGGAATAGCTTATGAAAA+CGG | - | tig0019789:31969-31988 | Msa1376210:CDS | 25.0% |
| ! | GTAGAAAAACAGAGTAATTA+AGG | + | tig0019789:32075-32094 | None:intergenic | 25.0% |
| !!! | ACTTGATTTGATGTTTTTGA+CGG | - | tig0019789:32125-32144 | Msa1376210:CDS | 25.0% |
| !! | AGAATTAGAGCATCTAAAAT+TGG | - | tig0019789:32238-32257 | Msa1376210:CDS | 25.0% |
| !! | TCTAAAATTGGTAAAGTTCA+AGG | - | tig0019789:32250-32269 | Msa1376210:CDS | 25.0% |
| ! | CTAAAATTGGTAAAGTTCAA+GGG | - | tig0019789:32251-32270 | Msa1376210:CDS | 25.0% |
| ! | AAAATTAATTCAGCTTGTCA+AGG | - | tig0019789:32310-32329 | Msa1376210:CDS | 25.0% |
| ! | AAATTAATTCAGCTTGTCAA+GGG | - | tig0019789:32311-32330 | Msa1376210:CDS | 25.0% |
| TATTTGCCAGATGAAATTCT+AGG | - | tig0019789:30625-30644 | Msa1376210:CDS | 30.0% | |
| ! | GTTTCAAGTGCATATTCATT+TGG | + | tig0019789:30670-30689 | None:intergenic | 30.0% |
| AATCAAGTTCTTGTCAAACA+TGG | - | tig0019789:30724-30743 | Msa1376210:CDS | 30.0% | |
| TGGATCTAAATCGTCAAAAT+TGG | + | tig0019789:30791-30810 | None:intergenic | 30.0% | |
| ATTAAGCTATTTGACAAGTG+AGG | - | tig0019789:31014-31033 | Msa1376210:intron | 30.0% | |
| TTCTTCAGTCGTTTCAAATT+TGG | - | tig0019789:31041-31060 | Msa1376210:intron | 30.0% | |
| !! | TTTATGTGAATGGACTTTTG+AGG | - | tig0019789:31365-31384 | Msa1376210:intron | 30.0% |
| ATACCAGCAATAGTTTAAGA+TGG | + | tig0019789:31409-31428 | None:intergenic | 30.0% | |
| AATATAAAACTTCCACTCGA+AGG | + | tig0019789:31672-31691 | None:intergenic | 30.0% | |
| ATAAATTGAGAGAGTTATGG+TGG | - | tig0019789:31694-31713 | Msa1376210:CDS | 30.0% | |
| TAATTTCAAGAAGGAGACTA+AGG | + | tig0019789:31754-31773 | None:intergenic | 30.0% | |
| ACGGTTATATCATACTTGAT+TGG | - | tig0019789:32144-32163 | Msa1376210:CDS | 30.0% | |
| TATTTGCCAGATGAAATTCT+AGG | - | tig0019789:30625-30644 | Msa1376210:CDS | 30.0% | |
| ! | GTTTCAAGTGCATATTCATT+TGG | + | tig0019789:30670-30689 | None:intergenic | 30.0% |
| AATCAAGTTCTTGTCAAACA+TGG | - | tig0019789:30724-30743 | Msa1376210:CDS | 30.0% | |
| TGGATCTAAATCGTCAAAAT+TGG | + | tig0019789:30791-30810 | None:intergenic | 30.0% | |
| ATTAAGCTATTTGACAAGTG+AGG | - | tig0019789:31014-31033 | Msa1376210:intron | 30.0% | |
| TTCTTCAGTCGTTTCAAATT+TGG | - | tig0019789:31041-31060 | Msa1376210:intron | 30.0% | |
| !! | TTTATGTGAATGGACTTTTG+AGG | - | tig0019789:31365-31384 | Msa1376210:intron | 30.0% |
| ATACCAGCAATAGTTTAAGA+TGG | + | tig0019789:31409-31428 | None:intergenic | 30.0% | |
| AATATAAAACTTCCACTCGA+AGG | + | tig0019789:31672-31691 | None:intergenic | 30.0% | |
| ATAAATTGAGAGAGTTATGG+TGG | - | tig0019789:31694-31713 | Msa1376210:CDS | 30.0% | |
| TAATTTCAAGAAGGAGACTA+AGG | + | tig0019789:31754-31773 | None:intergenic | 30.0% | |
| ACGGTTATATCATACTTGAT+TGG | - | tig0019789:32144-32163 | Msa1376210:CDS | 30.0% | |
| GGAACTATAGAAGATATCAC+TGG | - | tig0019789:30745-30764 | Msa1376210:CDS | 35.0% | |
| TATAGAAGATATCACTGGTG+TGG | - | tig0019789:30750-30769 | Msa1376210:CDS | 35.0% | |
| ! | TTTTGACGAGGAAAACAGAA+TGG | + | tig0019789:30978-30997 | None:intergenic | 35.0% |
| ! | TCAAATAGAGACTTTTGACG+AGG | + | tig0019789:30990-31009 | None:intergenic | 35.0% |
| AGATTGCAATCCACAACAAT+CGG | + | tig0019789:31091-31110 | None:intergenic | 35.0% | |
| ! | CACAAGTTGAAATGAGATTC+TGG | + | tig0019789:31243-31262 | None:intergenic | 35.0% |
| TTGCCATCTTAAACTATTGC+TGG | - | tig0019789:31403-31422 | Msa1376210:intron | 35.0% | |
| TATCAGTGTCTGCAAGAATT+TGG | + | tig0019789:31634-31653 | None:intergenic | 35.0% | |
| AATTCTTGCAGACACTGATA+TGG | - | tig0019789:31634-31653 | Msa1376210:CDS | 35.0% | |
| !!! | TGATGCTGTTTTCATTCTCA+TGG | + | tig0019789:31728-31747 | None:intergenic | 35.0% |
| ATTGGAGCAACTTTCTGTAA+CGG | - | tig0019789:31782-31801 | Msa1376210:CDS | 35.0% | |
| TCTACTCGCATAAATATTGG+TGG | - | tig0019789:31856-31875 | Msa1376210:CDS | 35.0% | |
| CTACTCGCATAAATATTGGT+GGG | - | tig0019789:31857-31876 | Msa1376210:CDS | 35.0% | |
| ATTGAGCCTAAATTTGACTG+CGG | + | tig0019789:32200-32219 | None:intergenic | 35.0% | |
| TCCAATAGCTGAAATTTCAG+TGG | - | tig0019789:32283-32302 | Msa1376210:CDS | 35.0% | |
| GGAACTATAGAAGATATCAC+TGG | - | tig0019789:30745-30764 | Msa1376210:CDS | 35.0% | |
| TATAGAAGATATCACTGGTG+TGG | - | tig0019789:30750-30769 | Msa1376210:CDS | 35.0% | |
| ! | TTTTGACGAGGAAAACAGAA+TGG | + | tig0019789:30978-30997 | None:intergenic | 35.0% |
| ! | TCAAATAGAGACTTTTGACG+AGG | + | tig0019789:30990-31009 | None:intergenic | 35.0% |
| AGATTGCAATCCACAACAAT+CGG | + | tig0019789:31091-31110 | None:intergenic | 35.0% | |
| ! | CACAAGTTGAAATGAGATTC+TGG | + | tig0019789:31243-31262 | None:intergenic | 35.0% |
| TTGCCATCTTAAACTATTGC+TGG | - | tig0019789:31403-31422 | Msa1376210:intron | 35.0% | |
| TATCAGTGTCTGCAAGAATT+TGG | + | tig0019789:31634-31653 | None:intergenic | 35.0% | |
| AATTCTTGCAGACACTGATA+TGG | - | tig0019789:31634-31653 | Msa1376210:CDS | 35.0% | |
| !!! | TGATGCTGTTTTCATTCTCA+TGG | + | tig0019789:31728-31747 | None:intergenic | 35.0% |
| ATTGGAGCAACTTTCTGTAA+CGG | - | tig0019789:31782-31801 | Msa1376210:CDS | 35.0% | |
| TCTACTCGCATAAATATTGG+TGG | - | tig0019789:31856-31875 | Msa1376210:CDS | 35.0% | |
| CTACTCGCATAAATATTGGT+GGG | - | tig0019789:31857-31876 | Msa1376210:CDS | 35.0% | |
| ATTGAGCCTAAATTTGACTG+CGG | + | tig0019789:32200-32219 | None:intergenic | 35.0% | |
| TCCAATAGCTGAAATTTCAG+TGG | - | tig0019789:32283-32302 | Msa1376210:CDS | 35.0% | |
| ATGCAGCCTAGAATTTCATC+TGG | + | tig0019789:30634-30653 | None:intergenic | 40.0% | |
| AAACCAGCCTCATATCTACT+AGG | - | tig0019789:30686-30705 | Msa1376210:CDS | 40.0% | |
| AAGTGAAATTGAAGCTTGCG+TGG | + | tig0019789:30823-30842 | None:intergenic | 40.0% | |
| ! | TTAACGATCACCGATTGTTG+TGG | - | tig0019789:31078-31097 | Msa1376210:intron | 40.0% |
| ACTTCAACTGCAAGCAATCT+AGG | + | tig0019789:31155-31174 | None:intergenic | 40.0% | |
| CTTAAGTCTTTCCGTTATCG+TGG | - | tig0019789:31198-31217 | Msa1376210:CDS | 40.0% | |
| CCATCCTTGATTTCAGACAA+GGG | - | tig0019789:31268-31287 | Msa1376210:CDS | 40.0% | |
| ! | TTAGCCCTTGTCTGAAATCA+AGG | + | tig0019789:31275-31294 | None:intergenic | 40.0% |
| ! | ACACTTTCAATCTGGAGTGT+CGG | + | tig0019789:31465-31484 | None:intergenic | 40.0% |
| TGCAGGGCATAATTTCAAGA+AGG | + | tig0019789:31763-31782 | None:intergenic | 40.0% | |
| CTTGAAATTATGCCCTGCAT+TGG | - | tig0019789:31764-31783 | Msa1376210:CDS | 40.0% | |
| GCCACTGAAATTTCAGCTAT+TGG | + | tig0019789:32287-32306 | None:intergenic | 40.0% | |
| CAAAGATAGAGACGTCAAGT+GGG | - | tig0019789:32342-32361 | Msa1376210:CDS | 40.0% | |
| ATGCAGCCTAGAATTTCATC+TGG | + | tig0019789:30634-30653 | None:intergenic | 40.0% | |
| AAACCAGCCTCATATCTACT+AGG | - | tig0019789:30686-30705 | Msa1376210:CDS | 40.0% | |
| AAGTGAAATTGAAGCTTGCG+TGG | + | tig0019789:30823-30842 | None:intergenic | 40.0% | |
| ! | TTAACGATCACCGATTGTTG+TGG | - | tig0019789:31078-31097 | Msa1376210:intron | 40.0% |
| ACTTCAACTGCAAGCAATCT+AGG | + | tig0019789:31155-31174 | None:intergenic | 40.0% | |
| CTTAAGTCTTTCCGTTATCG+TGG | - | tig0019789:31198-31217 | Msa1376210:CDS | 40.0% | |
| CCATCCTTGATTTCAGACAA+GGG | - | tig0019789:31268-31287 | Msa1376210:CDS | 40.0% | |
| ! | TTAGCCCTTGTCTGAAATCA+AGG | + | tig0019789:31275-31294 | None:intergenic | 40.0% |
| ! | ACACTTTCAATCTGGAGTGT+CGG | + | tig0019789:31465-31484 | None:intergenic | 40.0% |
| TGCAGGGCATAATTTCAAGA+AGG | + | tig0019789:31763-31782 | None:intergenic | 40.0% | |
| CTTGAAATTATGCCCTGCAT+TGG | - | tig0019789:31764-31783 | Msa1376210:CDS | 40.0% | |
| GCCACTGAAATTTCAGCTAT+TGG | + | tig0019789:32287-32306 | None:intergenic | 40.0% | |
| CAAAGATAGAGACGTCAAGT+GGG | - | tig0019789:32342-32361 | Msa1376210:CDS | 40.0% | |
| CTCTCCACCTAGTAGATATG+AGG | + | tig0019789:30696-30715 | None:intergenic | 45.0% | |
| CTACTAGGTGGAGAGACTTA+TGG | - | tig0019789:30701-30720 | Msa1376210:CDS | 45.0% | |
| ! | AGCTTGCGTGGTTGCTTTAA+TGG | + | tig0019789:30811-30830 | None:intergenic | 45.0% |
| GACGAGGAAAACAGAATGGA+AGG | + | tig0019789:30974-30993 | None:intergenic | 45.0% | |
| TGAGATTCTGGCCAAATCTG+AGG | + | tig0019789:31231-31250 | None:intergenic | 45.0% | |
| ! | GTCTGAAATCAAGGATGGCA+TGG | + | tig0019789:31266-31285 | None:intergenic | 45.0% |
| GCCATCCTTGATTTCAGACA+AGG | - | tig0019789:31267-31286 | Msa1376210:CDS | 45.0% | |
| ! | CCCTTGTCTGAAATCAAGGA+TGG | + | tig0019789:31271-31290 | None:intergenic | 45.0% |
| ! | CTCCAGATTGAAAGTGTGTC+TGG | - | tig0019789:31468-31487 | Msa1376210:intron | 45.0% |
| CACCAGACACACTTTCAATC+TGG | + | tig0019789:31473-31492 | None:intergenic | 45.0% | |
| CCACTCGAAGGAGAAATTGA+TGG | + | tig0019789:31660-31679 | None:intergenic | 45.0% | |
| CCATCAATTTCTCCTTCGAG+TGG | - | tig0019789:31657-31676 | Msa1376210:CDS | 45.0% | |
| CAGAAAGTTGCTCCAATGCA+GGG | + | tig0019789:31779-31798 | None:intergenic | 45.0% | |
| ACAGAAAGTTGCTCCAATGC+AGG | + | tig0019789:31780-31799 | None:intergenic | 45.0% | |
| GAGCAACTTTCTGTAACGGT+AGG | - | tig0019789:31786-31805 | Msa1376210:CDS | 45.0% | |
| TCTGCTCCGCAGTCAAATTT+AGG | - | tig0019789:32191-32210 | Msa1376210:CDS | 45.0% | |
| CTTGACGTCTCTATCTTTGG+AGG | + | tig0019789:32341-32360 | None:intergenic | 45.0% | |
| CCACTTGACGTCTCTATCTT+TGG | + | tig0019789:32344-32363 | None:intergenic | 45.0% | |
| CCAAAGATAGAGACGTCAAG+TGG | - | tig0019789:32341-32360 | Msa1376210:CDS | 45.0% | |
| CTCTCCACCTAGTAGATATG+AGG | + | tig0019789:30696-30715 | None:intergenic | 45.0% | |
| CTACTAGGTGGAGAGACTTA+TGG | - | tig0019789:30701-30720 | Msa1376210:CDS | 45.0% | |
| ! | AGCTTGCGTGGTTGCTTTAA+TGG | + | tig0019789:30811-30830 | None:intergenic | 45.0% |
| GACGAGGAAAACAGAATGGA+AGG | + | tig0019789:30974-30993 | None:intergenic | 45.0% | |
| TGAGATTCTGGCCAAATCTG+AGG | + | tig0019789:31231-31250 | None:intergenic | 45.0% | |
| ! | GTCTGAAATCAAGGATGGCA+TGG | + | tig0019789:31266-31285 | None:intergenic | 45.0% |
| GCCATCCTTGATTTCAGACA+AGG | - | tig0019789:31267-31286 | Msa1376210:CDS | 45.0% | |
| ! | CCCTTGTCTGAAATCAAGGA+TGG | + | tig0019789:31271-31290 | None:intergenic | 45.0% |
| ! | CTCCAGATTGAAAGTGTGTC+TGG | - | tig0019789:31468-31487 | Msa1376210:intron | 45.0% |
| CACCAGACACACTTTCAATC+TGG | + | tig0019789:31473-31492 | None:intergenic | 45.0% | |
| CCACTCGAAGGAGAAATTGA+TGG | + | tig0019789:31660-31679 | None:intergenic | 45.0% | |
| CCATCAATTTCTCCTTCGAG+TGG | - | tig0019789:31657-31676 | Msa1376210:CDS | 45.0% | |
| CAGAAAGTTGCTCCAATGCA+GGG | + | tig0019789:31779-31798 | None:intergenic | 45.0% | |
| ACAGAAAGTTGCTCCAATGC+AGG | + | tig0019789:31780-31799 | None:intergenic | 45.0% | |
| GAGCAACTTTCTGTAACGGT+AGG | - | tig0019789:31786-31805 | Msa1376210:CDS | 45.0% | |
| TCTGCTCCGCAGTCAAATTT+AGG | - | tig0019789:32191-32210 | Msa1376210:CDS | 45.0% | |
| CTTGACGTCTCTATCTTTGG+AGG | + | tig0019789:32341-32360 | None:intergenic | 45.0% | |
| CCACTTGACGTCTCTATCTT+TGG | + | tig0019789:32344-32363 | None:intergenic | 45.0% | |
| CCAAAGATAGAGACGTCAAG+TGG | - | tig0019789:32341-32360 | Msa1376210:CDS | 45.0% | |
| CCACCTAGTAGATATGAGGC+TGG | + | tig0019789:30692-30711 | None:intergenic | 50.0% | |
| CCAGCCTCATATCTACTAGG+TGG | - | tig0019789:30689-30708 | Msa1376210:CDS | 50.0% | |
| GAGGAAGAGGTCCACGATAA+CGG | + | tig0019789:31212-31231 | None:intergenic | 50.0% | |
| GTGGACCTCTTCCTCAGATT+TGG | - | tig0019789:31217-31236 | Msa1376210:CDS | 50.0% | |
| TCTGGCCAAATCTGAGGAAG+AGG | + | tig0019789:31225-31244 | None:intergenic | 50.0% | |
| TGTCGAATACCGACACGTGT+CGG | + | tig0019789:31497-31516 | None:intergenic | 50.0% | |
| GACGTCAAGTGGGAGCAATT+TGG | - | tig0019789:32352-32371 | Msa1376210:CDS | 50.0% | |
| CCACCTAGTAGATATGAGGC+TGG | + | tig0019789:30692-30711 | None:intergenic | 50.0% | |
| CCAGCCTCATATCTACTAGG+TGG | - | tig0019789:30689-30708 | Msa1376210:CDS | 50.0% | |
| GAGGAAGAGGTCCACGATAA+CGG | + | tig0019789:31212-31231 | None:intergenic | 50.0% | |
| GTGGACCTCTTCCTCAGATT+TGG | - | tig0019789:31217-31236 | Msa1376210:CDS | 50.0% | |
| TCTGGCCAAATCTGAGGAAG+AGG | + | tig0019789:31225-31244 | None:intergenic | 50.0% | |
| TGTCGAATACCGACACGTGT+CGG | + | tig0019789:31497-31516 | None:intergenic | 50.0% | |
| GACGTCAAGTGGGAGCAATT+TGG | - | tig0019789:32352-32371 | Msa1376210:CDS | 50.0% | |
| TCAGACAAGGGCTAAGCTGC+AGG | - | tig0019789:31280-31299 | Msa1376210:CDS | 55.0% | |
| CAGACAAGGGCTAAGCTGCA+GGG | - | tig0019789:31281-31300 | Msa1376210:CDS | 55.0% | |
| TCAGACAAGGGCTAAGCTGC+AGG | - | tig0019789:31280-31299 | Msa1376210:CDS | 55.0% | |
| CAGACAAGGGCTAAGCTGCA+GGG | - | tig0019789:31281-31300 | Msa1376210:CDS | 55.0% | |
| GTCTGGTGTCCGACACGTGT+CGG | - | tig0019789:31485-31504 | Msa1376210:intron | 60.0% | |
| GTCTGGTGTCCGACACGTGT+CGG | - | tig0019789:31485-31504 | Msa1376210:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019789 | gene | 30595 | 32394 | 30595 | ID=Msa1376210;Name=Msa1376210 |
| tig0019789 | mRNA | 30595 | 32394 | 30595 | ID=Msa1376210-mRNA-1;Parent=Msa1376210;Name=Msa1376210-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|1|1|3|0|390 |
| tig0019789 | exon | 31603 | 32394 | 31603 | ID=Msa1376210-mRNA-1:exon:5061;Parent=Msa1376210-mRNA-1 |
| tig0019789 | exon | 31186 | 31344 | 31186 | ID=Msa1376210-mRNA-1:exon:5060;Parent=Msa1376210-mRNA-1 |
| tig0019789 | exon | 30595 | 30816 | 30595 | ID=Msa1376210-mRNA-1:exon:5059;Parent=Msa1376210-mRNA-1 |
| tig0019789 | CDS | 31603 | 32394 | 31603 | ID=Msa1376210-mRNA-1:cds;Parent=Msa1376210-mRNA-1 |
| tig0019789 | CDS | 31186 | 31344 | 31186 | ID=Msa1376210-mRNA-1:cds;Parent=Msa1376210-mRNA-1 |
| tig0019789 | CDS | 30595 | 30816 | 30595 | ID=Msa1376210-mRNA-1:cds;Parent=Msa1376210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
