Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371670 | XP_013470445.1 | 92.564 | 390 | 29 | 0 | 1 | 390 | 1 | 390 | 0.0 | 737 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371670 | sp|Q5S4V7|FB129_ARATH | 44.282 | 341 | 179 | 7 | 20 | 352 | 20 | 357 | 3.52e-75 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371670 | A0A072VST6 | 92.564 | 390 | 29 | 0 | 1 | 390 | 1 | 390 | 0.0 | 737 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045510 | Msa1371670 | 0.991226 | 1.531739e-186 | -8.615850e-47 |
| Msa1371670 | Msa1376210 | 0.964955 | 5.536209e-124 | -8.615850e-47 |
| Msa0740630 | Msa1371670 | 0.803866 | 2.841625e-49 | -8.615850e-47 |
| Msa0820880 | Msa1371670 | 0.807787 | 4.262142e-50 | -8.615850e-47 |
| Msa0484870 | Msa1371670 | 0.810051 | 1.397209e-50 | -8.615850e-47 |
| Msa0859040 | Msa1371670 | 0.814308 | 1.646245e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371670 | MtrunA17_Chr1g0212661 | 92.564 | 390 | 29 | 0 | 1 | 390 | 1 | 390 | 0.0 | 737 |
| Msa1371670 | MtrunA17_Chr7g0222801 | 63.452 | 394 | 132 | 4 | 2 | 385 | 4 | 395 | 8.79e-167 | 472 |
| Msa1371670 | MtrunA17_Chr1g0212641 | 80.741 | 135 | 23 | 1 | 99 | 230 | 10 | 144 | 6.69e-68 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371670 | AT2G39490.1 | 44.282 | 341 | 179 | 7 | 20 | 352 | 20 | 357 | 3.58e-76 | 241 |
Find 63 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCAATCGTTTCAAATT+TGG | 0.134858 | tig0019249:-38119 | Msa1371670:CDS |
| AAGAACTTCAGAATTCTTTA+TGG | 0.162628 | tig0019249:+37820 | None:intergenic |
| GCCACTGAAATTTCAGCTAT+TGG | 0.231284 | tig0019249:+36876 | None:intergenic |
| CCACTTGACGTCTCTATCTT+TGG | 0.252261 | tig0019249:+36819 | None:intergenic |
| AGAATTAGAGCATCTAAAAT+TGG | 0.265224 | tig0019249:-36922 | Msa1371670:CDS |
| TGGATCTAAATCGTCAAAAT+TGG | 0.275752 | tig0019249:+38372 | None:intergenic |
| AGCTTGCGTGGTTGCTTTAA+TGG | 0.277566 | tig0019249:+38352 | None:intergenic |
| TCTGCTCCGCAGTCAAATTT+AGG | 0.329512 | tig0019249:-36969 | Msa1371670:CDS |
| CACAAGTTGAAATGAGATTC+TGG | 0.342737 | tig0019249:+37920 | None:intergenic |
| TATTTGCCAGATGAAATTCT+AGG | 0.345450 | tig0019249:-38535 | Msa1371670:CDS |
| ACTTCAACTGCAAGCAATCT+AGG | 0.370790 | tig0019249:+38008 | None:intergenic |
| GTGGACCTCTTCCTCAGATT+TGG | 0.372608 | tig0019249:-37943 | Msa1371670:CDS |
| AATTCTTGCAGACACTGATA+TGG | 0.376690 | tig0019249:-37526 | Msa1371670:intron |
| TCTAAAATTGGTAAAGTTCA+AGG | 0.381812 | tig0019249:-36910 | Msa1371670:CDS |
| AAGTTCTTACTTTATGTGAA+TGG | 0.384442 | tig0019249:-37805 | Msa1371670:CDS |
| CTACTAGGTGGAGAGACTTA+TGG | 0.390498 | tig0019249:-38459 | Msa1371670:CDS |
| GTTTCAAGTGCATATTCATT+TGG | 0.422873 | tig0019249:+38493 | None:intergenic |
| GACGTCAAGTGGGAGCAATT+TGG | 0.426674 | tig0019249:-36808 | Msa1371670:CDS |
| TCAGACAAGGGCTAAGCTGC+AGG | 0.433267 | tig0019249:-37880 | Msa1371670:CDS |
| TAAGTTTAGAAGTTCTAAGA+TGG | 0.451127 | tig0019249:+37981 | None:intergenic |
| TCTATAAATTGAGAGAGTTA+TGG | 0.451792 | tig0019249:-37469 | Msa1371670:CDS |
| TTAGCCCTTGTCTGAAATCA+AGG | 0.468763 | tig0019249:+37888 | None:intergenic |
| CTTGACGTCTCTATCTTTGG+AGG | 0.472938 | tig0019249:+36822 | None:intergenic |
| ACAGAAAGTTGCTCCAATGC+AGG | 0.473084 | tig0019249:+37383 | None:intergenic |
| CTTGAAATTATGCCCTGCAT+TGG | 0.474163 | tig0019249:-37396 | Msa1371670:CDS |
| CTCTCCACCTAGTAGATATG+AGG | 0.477554 | tig0019249:+38467 | None:intergenic |
| ATGCAGCCTAGAATTTCATC+TGG | 0.480500 | tig0019249:+38529 | None:intergenic |
| ATTCTGAACACTTTCTTCCA+TGG | 0.490138 | tig0019249:+38567 | None:intergenic |
| CCACTCGAAGGAGAAATTGA+TGG | 0.492463 | tig0019249:+37503 | None:intergenic |
| CTAAAATTGGTAAAGTTCAA+GGG | 0.506831 | tig0019249:-36909 | Msa1371670:CDS |
| GAGGAAGAGGTCCACGATAA+CGG | 0.510369 | tig0019249:+37951 | None:intergenic |
| AGATTGCAATCCACAACAAT+CGG | 0.513328 | tig0019249:+38072 | None:intergenic |
| ATAAATTGAGAGAGTTATGG+TGG | 0.517963 | tig0019249:-37466 | Msa1371670:CDS |
| AAACCAGCCTCATATCTACT+AGG | 0.521704 | tig0019249:-38474 | Msa1371670:CDS |
| AAAATTAATTCAGCTTGTCA+AGG | 0.524836 | tig0019249:-36850 | Msa1371670:CDS |
| CTTAAGTCTTTCCGTTATCG+TGG | 0.528513 | tig0019249:-37962 | Msa1371670:CDS |
| TAATTTCAAGAAGGAGACTA+AGG | 0.531430 | tig0019249:+37409 | None:intergenic |
| TCTGGCCAAATCTGAGGAAG+AGG | 0.536823 | tig0019249:+37938 | None:intergenic |
| CCAAAGATAGAGACGTCAAG+TGG | 0.542130 | tig0019249:-36819 | Msa1371670:CDS |
| GTCTGAAATCAAGGATGGCA+TGG | 0.544813 | tig0019249:+37897 | None:intergenic |
| TTAACGATCACCGATTGTTG+TGG | 0.551205 | tig0019249:-38082 | Msa1371670:CDS |
| GCCATCCTTGATTTCAGACA+AGG | 0.553581 | tig0019249:-37893 | Msa1371670:CDS |
| GACGAGGAAAACAGAATGGA+AGG | 0.554694 | tig0019249:+38189 | None:intergenic |
| AAATTAATTCAGCTTGTCAA+GGG | 0.577778 | tig0019249:-36849 | Msa1371670:CDS |
| CCATCAATTTCTCCTTCGAG+TGG | 0.585332 | tig0019249:-37503 | Msa1371670:CDS |
| TGAGATTCTGGCCAAATCTG+AGG | 0.585377 | tig0019249:+37932 | None:intergenic |
| AATATAAAACTTCCACTCGA+AGG | 0.588557 | tig0019249:+37491 | None:intergenic |
| CAGACAAGGGCTAAGCTGCA+GGG | 0.594671 | tig0019249:-37879 | Msa1371670:CDS |
| CAGAAAGTTGCTCCAATGCA+GGG | 0.595504 | tig0019249:+37384 | None:intergenic |
| AATCAAGTTCTTGTCAAACA+TGG | 0.599066 | tig0019249:-38436 | Msa1371670:CDS |
| ATTGGAGCAACTTTCTGTAA+CGG | 0.601485 | tig0019249:-37378 | Msa1371670:intron |
| CCACCTAGTAGATATGAGGC+TGG | 0.603197 | tig0019249:+38471 | None:intergenic |
| ATTAAGCTATTTGACAAGTG+AGG | 0.604260 | tig0019249:-38146 | Msa1371670:CDS |
| CCCTTGTCTGAAATCAAGGA+TGG | 0.606066 | tig0019249:+37892 | None:intergenic |
| TGCAGGGCATAATTTCAAGA+AGG | 0.623371 | tig0019249:+37400 | None:intergenic |
| GGAACTATAGAAGATATCAC+TGG | 0.627429 | tig0019249:-38415 | Msa1371670:CDS |
| TCCAATAGCTGAAATTTCAG+TGG | 0.627581 | tig0019249:-36877 | Msa1371670:CDS |
| CCATCCTTGATTTCAGACAA+GGG | 0.643441 | tig0019249:-37892 | Msa1371670:CDS |
| TATAGAAGATATCACTGGTG+TGG | 0.649557 | tig0019249:-38410 | Msa1371670:CDS |
| AAGTGAAATTGAAGCTTGCG+TGG | 0.653797 | tig0019249:+38340 | None:intergenic |
| CAAAGATAGAGACGTCAAGT+GGG | 0.665557 | tig0019249:-36818 | Msa1371670:CDS |
| ATTGAGCCTAAATTTGACTG+CGG | 0.678034 | tig0019249:+36963 | None:intergenic |
| CCAGCCTCATATCTACTAGG+TGG | 0.679083 | tig0019249:-38471 | Msa1371670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTCTTGTTTTTTCTTAT+GGG | - | tig0019249:37083-37102 | Msa1371670:intron | 20.0% |
| !! | TTAACTCAAAAACTTTAAGT+AGG | + | tig0019249:38015-38034 | None:intergenic | 20.0% |
| !!! | ACTTATTTTCATAAACTCTT+TGG | - | tig0019249:38115-38134 | Msa1371670:CDS | 20.0% |
| !! | TTATGATTTCATAAACTCTT+TGG | - | tig0019249:38144-38163 | Msa1371670:CDS | 20.0% |
| !! | TAGAAAAACAGAGTAATTAA+GGG | + | tig0019249:38267-38286 | None:intergenic | 20.0% |
| !!! | TTCTTCTTGTTTTTTCTTAT+GGG | - | tig0019249:37083-37102 | Msa1371670:intron | 20.0% |
| !! | TTAACTCAAAAACTTTAAGT+AGG | + | tig0019249:38015-38034 | None:intergenic | 20.0% |
| !!! | ACTTATTTTCATAAACTCTT+TGG | - | tig0019249:38115-38134 | Msa1371670:CDS | 20.0% |
| !! | TTATGATTTCATAAACTCTT+TGG | - | tig0019249:38144-38163 | Msa1371670:CDS | 20.0% |
| !! | TAGAAAAACAGAGTAATTAA+GGG | + | tig0019249:38267-38286 | None:intergenic | 20.0% |
| !!! | CTTCTTCTTGTTTTTTCTTA+TGG | - | tig0019249:37082-37101 | Msa1371670:intron | 25.0% |
| !!! | TCTTCTTGTTTTTTCTTATG+GGG | - | tig0019249:37084-37103 | Msa1371670:intron | 25.0% |
| ! | TTCTTCAATCGTTTCAAATT+TGG | - | tig0019249:37234-37253 | Msa1371670:intron | 25.0% |
| !!! | TAAGTTTAGAAGTTCTAAGA+TGG | + | tig0019249:37375-37394 | None:intergenic | 25.0% |
| ! | AAGAACTTCAGAATTCTTTA+TGG | + | tig0019249:37536-37555 | None:intergenic | 25.0% |
| ! | AAGTTCTTACTTTATGTGAA+TGG | - | tig0019249:37548-37567 | Msa1371670:intron | 25.0% |
| ! | TCTATAAATTGAGAGAGTTA+TGG | - | tig0019249:37884-37903 | Msa1371670:CDS | 25.0% |
| ! | TTATCTACTCGCATAAATAT+TGG | - | tig0019249:38046-38065 | Msa1371670:CDS | 25.0% |
| !! | TTTGGAATAGCTTATGAAAA+CGG | - | tig0019249:38162-38181 | Msa1371670:CDS | 25.0% |
| ! | GTAGAAAAACAGAGTAATTA+AGG | + | tig0019249:38268-38287 | None:intergenic | 25.0% |
| !!! | ACTTGATTTGATGTTTTTGA+CGG | - | tig0019249:38318-38337 | Msa1371670:CDS | 25.0% |
| !! | AGAATTAGAGCATCTAAAAT+TGG | - | tig0019249:38431-38450 | Msa1371670:CDS | 25.0% |
| !! | TCTAAAATTGGTAAAGTTCA+AGG | - | tig0019249:38443-38462 | Msa1371670:CDS | 25.0% |
| ! | CTAAAATTGGTAAAGTTCAA+GGG | - | tig0019249:38444-38463 | Msa1371670:CDS | 25.0% |
| ! | AAAATTAATTCAGCTTGTCA+AGG | - | tig0019249:38503-38522 | Msa1371670:CDS | 25.0% |
| ! | AAATTAATTCAGCTTGTCAA+GGG | - | tig0019249:38504-38523 | Msa1371670:CDS | 25.0% |
| !!! | CTTCTTCTTGTTTTTTCTTA+TGG | - | tig0019249:37082-37101 | Msa1371670:intron | 25.0% |
| !!! | TCTTCTTGTTTTTTCTTATG+GGG | - | tig0019249:37084-37103 | Msa1371670:intron | 25.0% |
| ! | TTCTTCAATCGTTTCAAATT+TGG | - | tig0019249:37234-37253 | Msa1371670:intron | 25.0% |
| !!! | TAAGTTTAGAAGTTCTAAGA+TGG | + | tig0019249:37375-37394 | None:intergenic | 25.0% |
| ! | AAGAACTTCAGAATTCTTTA+TGG | + | tig0019249:37536-37555 | None:intergenic | 25.0% |
| ! | AAGTTCTTACTTTATGTGAA+TGG | - | tig0019249:37548-37567 | Msa1371670:intron | 25.0% |
| ! | TCTATAAATTGAGAGAGTTA+TGG | - | tig0019249:37884-37903 | Msa1371670:CDS | 25.0% |
| ! | TTATCTACTCGCATAAATAT+TGG | - | tig0019249:38046-38065 | Msa1371670:CDS | 25.0% |
| !! | TTTGGAATAGCTTATGAAAA+CGG | - | tig0019249:38162-38181 | Msa1371670:CDS | 25.0% |
| ! | GTAGAAAAACAGAGTAATTA+AGG | + | tig0019249:38268-38287 | None:intergenic | 25.0% |
| !!! | ACTTGATTTGATGTTTTTGA+CGG | - | tig0019249:38318-38337 | Msa1371670:CDS | 25.0% |
| !! | AGAATTAGAGCATCTAAAAT+TGG | - | tig0019249:38431-38450 | Msa1371670:CDS | 25.0% |
| !! | TCTAAAATTGGTAAAGTTCA+AGG | - | tig0019249:38443-38462 | Msa1371670:CDS | 25.0% |
| ! | CTAAAATTGGTAAAGTTCAA+GGG | - | tig0019249:38444-38463 | Msa1371670:CDS | 25.0% |
| ! | AAAATTAATTCAGCTTGTCA+AGG | - | tig0019249:38503-38522 | Msa1371670:CDS | 25.0% |
| ! | AAATTAATTCAGCTTGTCAA+GGG | - | tig0019249:38504-38523 | Msa1371670:CDS | 25.0% |
| TATTTGCCAGATGAAATTCT+AGG | - | tig0019249:36818-36837 | Msa1371670:CDS | 30.0% | |
| ! | GTTTCAAGTGCATATTCATT+TGG | + | tig0019249:36863-36882 | None:intergenic | 30.0% |
| AATCAAGTTCTTGTCAAACA+TGG | - | tig0019249:36917-36936 | Msa1371670:CDS | 30.0% | |
| TGGATCTAAATCGTCAAAAT+TGG | + | tig0019249:36984-37003 | None:intergenic | 30.0% | |
| ATTAAGCTATTTGACAAGTG+AGG | - | tig0019249:37207-37226 | Msa1371670:intron | 30.0% | |
| !! | TTTATGTGAATGGACTTTTG+AGG | - | tig0019249:37558-37577 | Msa1371670:intron | 30.0% |
| ATACCAGCAATAGTTTAAGA+TGG | + | tig0019249:37602-37621 | None:intergenic | 30.0% | |
| AATATAAAACTTCCACTCGA+AGG | + | tig0019249:37865-37884 | None:intergenic | 30.0% | |
| ATAAATTGAGAGAGTTATGG+TGG | - | tig0019249:37887-37906 | Msa1371670:CDS | 30.0% | |
| TAATTTCAAGAAGGAGACTA+AGG | + | tig0019249:37947-37966 | None:intergenic | 30.0% | |
| ACGGTTATATCATACTTGAT+TGG | - | tig0019249:38337-38356 | Msa1371670:CDS | 30.0% | |
| TATTTGCCAGATGAAATTCT+AGG | - | tig0019249:36818-36837 | Msa1371670:CDS | 30.0% | |
| ! | GTTTCAAGTGCATATTCATT+TGG | + | tig0019249:36863-36882 | None:intergenic | 30.0% |
| AATCAAGTTCTTGTCAAACA+TGG | - | tig0019249:36917-36936 | Msa1371670:CDS | 30.0% | |
| TGGATCTAAATCGTCAAAAT+TGG | + | tig0019249:36984-37003 | None:intergenic | 30.0% | |
| ATTAAGCTATTTGACAAGTG+AGG | - | tig0019249:37207-37226 | Msa1371670:intron | 30.0% | |
| !! | TTTATGTGAATGGACTTTTG+AGG | - | tig0019249:37558-37577 | Msa1371670:intron | 30.0% |
| ATACCAGCAATAGTTTAAGA+TGG | + | tig0019249:37602-37621 | None:intergenic | 30.0% | |
| AATATAAAACTTCCACTCGA+AGG | + | tig0019249:37865-37884 | None:intergenic | 30.0% | |
| ATAAATTGAGAGAGTTATGG+TGG | - | tig0019249:37887-37906 | Msa1371670:CDS | 30.0% | |
| TAATTTCAAGAAGGAGACTA+AGG | + | tig0019249:37947-37966 | None:intergenic | 30.0% | |
| ACGGTTATATCATACTTGAT+TGG | - | tig0019249:38337-38356 | Msa1371670:CDS | 30.0% | |
| GGAACTATAGAAGATATCAC+TGG | - | tig0019249:36938-36957 | Msa1371670:CDS | 35.0% | |
| TATAGAAGATATCACTGGTG+TGG | - | tig0019249:36943-36962 | Msa1371670:CDS | 35.0% | |
| ! | TTTTGACGAGGAAAACAGAA+TGG | + | tig0019249:37171-37190 | None:intergenic | 35.0% |
| ! | TCAAATAGAGACTTTTGACG+AGG | + | tig0019249:37183-37202 | None:intergenic | 35.0% |
| AGATTGCAATCCACAACAAT+CGG | + | tig0019249:37284-37303 | None:intergenic | 35.0% | |
| ! | CACAAGTTGAAATGAGATTC+TGG | + | tig0019249:37436-37455 | None:intergenic | 35.0% |
| TTGCCATCTTAAACTATTGC+TGG | - | tig0019249:37596-37615 | Msa1371670:intron | 35.0% | |
| TATCAGTGTCTGCAAGAATT+TGG | + | tig0019249:37827-37846 | None:intergenic | 35.0% | |
| AATTCTTGCAGACACTGATA+TGG | - | tig0019249:37827-37846 | Msa1371670:CDS | 35.0% | |
| !!! | TGATGCTGTTTTCATTCTCA+TGG | + | tig0019249:37921-37940 | None:intergenic | 35.0% |
| ATTGGAGCAACTTTCTGTAA+CGG | - | tig0019249:37975-37994 | Msa1371670:CDS | 35.0% | |
| TCTACTCGCATAAATATTGG+TGG | - | tig0019249:38049-38068 | Msa1371670:CDS | 35.0% | |
| CTACTCGCATAAATATTGGT+GGG | - | tig0019249:38050-38069 | Msa1371670:CDS | 35.0% | |
| ATTGAGCCTAAATTTGACTG+CGG | + | tig0019249:38393-38412 | None:intergenic | 35.0% | |
| TCCAATAGCTGAAATTTCAG+TGG | - | tig0019249:38476-38495 | Msa1371670:CDS | 35.0% | |
| GGAACTATAGAAGATATCAC+TGG | - | tig0019249:36938-36957 | Msa1371670:CDS | 35.0% | |
| TATAGAAGATATCACTGGTG+TGG | - | tig0019249:36943-36962 | Msa1371670:CDS | 35.0% | |
| ! | TTTTGACGAGGAAAACAGAA+TGG | + | tig0019249:37171-37190 | None:intergenic | 35.0% |
| ! | TCAAATAGAGACTTTTGACG+AGG | + | tig0019249:37183-37202 | None:intergenic | 35.0% |
| AGATTGCAATCCACAACAAT+CGG | + | tig0019249:37284-37303 | None:intergenic | 35.0% | |
| ! | CACAAGTTGAAATGAGATTC+TGG | + | tig0019249:37436-37455 | None:intergenic | 35.0% |
| TTGCCATCTTAAACTATTGC+TGG | - | tig0019249:37596-37615 | Msa1371670:intron | 35.0% | |
| TATCAGTGTCTGCAAGAATT+TGG | + | tig0019249:37827-37846 | None:intergenic | 35.0% | |
| AATTCTTGCAGACACTGATA+TGG | - | tig0019249:37827-37846 | Msa1371670:CDS | 35.0% | |
| !!! | TGATGCTGTTTTCATTCTCA+TGG | + | tig0019249:37921-37940 | None:intergenic | 35.0% |
| ATTGGAGCAACTTTCTGTAA+CGG | - | tig0019249:37975-37994 | Msa1371670:CDS | 35.0% | |
| TCTACTCGCATAAATATTGG+TGG | - | tig0019249:38049-38068 | Msa1371670:CDS | 35.0% | |
| CTACTCGCATAAATATTGGT+GGG | - | tig0019249:38050-38069 | Msa1371670:CDS | 35.0% | |
| ATTGAGCCTAAATTTGACTG+CGG | + | tig0019249:38393-38412 | None:intergenic | 35.0% | |
| TCCAATAGCTGAAATTTCAG+TGG | - | tig0019249:38476-38495 | Msa1371670:CDS | 35.0% | |
| ATGCAGCCTAGAATTTCATC+TGG | + | tig0019249:36827-36846 | None:intergenic | 40.0% | |
| AAACCAGCCTCATATCTACT+AGG | - | tig0019249:36879-36898 | Msa1371670:CDS | 40.0% | |
| AAGTGAAATTGAAGCTTGCG+TGG | + | tig0019249:37016-37035 | None:intergenic | 40.0% | |
| ! | TTAACGATCACCGATTGTTG+TGG | - | tig0019249:37271-37290 | Msa1371670:intron | 40.0% |
| ACTTCAACTGCAAGCAATCT+AGG | + | tig0019249:37348-37367 | None:intergenic | 40.0% | |
| CTTAAGTCTTTCCGTTATCG+TGG | - | tig0019249:37391-37410 | Msa1371670:CDS | 40.0% | |
| CCATCCTTGATTTCAGACAA+GGG | - | tig0019249:37461-37480 | Msa1371670:CDS | 40.0% | |
| ! | TTAGCCCTTGTCTGAAATCA+AGG | + | tig0019249:37468-37487 | None:intergenic | 40.0% |
| ! | ACACTTTCAATCTGGAGTGT+CGG | + | tig0019249:37658-37677 | None:intergenic | 40.0% |
| TGCAGGGCATAATTTCAAGA+AGG | + | tig0019249:37956-37975 | None:intergenic | 40.0% | |
| CTTGAAATTATGCCCTGCAT+TGG | - | tig0019249:37957-37976 | Msa1371670:CDS | 40.0% | |
| GCCACTGAAATTTCAGCTAT+TGG | + | tig0019249:38480-38499 | None:intergenic | 40.0% | |
| CAAAGATAGAGACGTCAAGT+GGG | - | tig0019249:38535-38554 | Msa1371670:CDS | 40.0% | |
| ATGCAGCCTAGAATTTCATC+TGG | + | tig0019249:36827-36846 | None:intergenic | 40.0% | |
| AAACCAGCCTCATATCTACT+AGG | - | tig0019249:36879-36898 | Msa1371670:CDS | 40.0% | |
| AAGTGAAATTGAAGCTTGCG+TGG | + | tig0019249:37016-37035 | None:intergenic | 40.0% | |
| ! | TTAACGATCACCGATTGTTG+TGG | - | tig0019249:37271-37290 | Msa1371670:intron | 40.0% |
| ACTTCAACTGCAAGCAATCT+AGG | + | tig0019249:37348-37367 | None:intergenic | 40.0% | |
| CTTAAGTCTTTCCGTTATCG+TGG | - | tig0019249:37391-37410 | Msa1371670:CDS | 40.0% | |
| CCATCCTTGATTTCAGACAA+GGG | - | tig0019249:37461-37480 | Msa1371670:CDS | 40.0% | |
| ! | TTAGCCCTTGTCTGAAATCA+AGG | + | tig0019249:37468-37487 | None:intergenic | 40.0% |
| ! | ACACTTTCAATCTGGAGTGT+CGG | + | tig0019249:37658-37677 | None:intergenic | 40.0% |
| TGCAGGGCATAATTTCAAGA+AGG | + | tig0019249:37956-37975 | None:intergenic | 40.0% | |
| CTTGAAATTATGCCCTGCAT+TGG | - | tig0019249:37957-37976 | Msa1371670:CDS | 40.0% | |
| GCCACTGAAATTTCAGCTAT+TGG | + | tig0019249:38480-38499 | None:intergenic | 40.0% | |
| CAAAGATAGAGACGTCAAGT+GGG | - | tig0019249:38535-38554 | Msa1371670:CDS | 40.0% | |
| CTCTCCACCTAGTAGATATG+AGG | + | tig0019249:36889-36908 | None:intergenic | 45.0% | |
| CTACTAGGTGGAGAGACTTA+TGG | - | tig0019249:36894-36913 | Msa1371670:CDS | 45.0% | |
| ! | AGCTTGCGTGGTTGCTTTAA+TGG | + | tig0019249:37004-37023 | None:intergenic | 45.0% |
| GACGAGGAAAACAGAATGGA+AGG | + | tig0019249:37167-37186 | None:intergenic | 45.0% | |
| TGAGATTCTGGCCAAATCTG+AGG | + | tig0019249:37424-37443 | None:intergenic | 45.0% | |
| ! | GTCTGAAATCAAGGATGGCA+TGG | + | tig0019249:37459-37478 | None:intergenic | 45.0% |
| GCCATCCTTGATTTCAGACA+AGG | - | tig0019249:37460-37479 | Msa1371670:CDS | 45.0% | |
| ! | CCCTTGTCTGAAATCAAGGA+TGG | + | tig0019249:37464-37483 | None:intergenic | 45.0% |
| ! | CTCCAGATTGAAAGTGTGTC+TGG | - | tig0019249:37661-37680 | Msa1371670:intron | 45.0% |
| CACCAGACACACTTTCAATC+TGG | + | tig0019249:37666-37685 | None:intergenic | 45.0% | |
| CCACTCGAAGGAGAAATTGA+TGG | + | tig0019249:37853-37872 | None:intergenic | 45.0% | |
| CCATCAATTTCTCCTTCGAG+TGG | - | tig0019249:37850-37869 | Msa1371670:CDS | 45.0% | |
| CAGAAAGTTGCTCCAATGCA+GGG | + | tig0019249:37972-37991 | None:intergenic | 45.0% | |
| ACAGAAAGTTGCTCCAATGC+AGG | + | tig0019249:37973-37992 | None:intergenic | 45.0% | |
| GAGCAACTTTCTGTAACGGT+AGG | - | tig0019249:37979-37998 | Msa1371670:CDS | 45.0% | |
| TCTGCTCCGCAGTCAAATTT+AGG | - | tig0019249:38384-38403 | Msa1371670:CDS | 45.0% | |
| CTTGACGTCTCTATCTTTGG+AGG | + | tig0019249:38534-38553 | None:intergenic | 45.0% | |
| CCACTTGACGTCTCTATCTT+TGG | + | tig0019249:38537-38556 | None:intergenic | 45.0% | |
| CCAAAGATAGAGACGTCAAG+TGG | - | tig0019249:38534-38553 | Msa1371670:CDS | 45.0% | |
| CTCTCCACCTAGTAGATATG+AGG | + | tig0019249:36889-36908 | None:intergenic | 45.0% | |
| CTACTAGGTGGAGAGACTTA+TGG | - | tig0019249:36894-36913 | Msa1371670:CDS | 45.0% | |
| ! | AGCTTGCGTGGTTGCTTTAA+TGG | + | tig0019249:37004-37023 | None:intergenic | 45.0% |
| GACGAGGAAAACAGAATGGA+AGG | + | tig0019249:37167-37186 | None:intergenic | 45.0% | |
| TGAGATTCTGGCCAAATCTG+AGG | + | tig0019249:37424-37443 | None:intergenic | 45.0% | |
| ! | GTCTGAAATCAAGGATGGCA+TGG | + | tig0019249:37459-37478 | None:intergenic | 45.0% |
| GCCATCCTTGATTTCAGACA+AGG | - | tig0019249:37460-37479 | Msa1371670:CDS | 45.0% | |
| ! | CCCTTGTCTGAAATCAAGGA+TGG | + | tig0019249:37464-37483 | None:intergenic | 45.0% |
| ! | CTCCAGATTGAAAGTGTGTC+TGG | - | tig0019249:37661-37680 | Msa1371670:intron | 45.0% |
| CACCAGACACACTTTCAATC+TGG | + | tig0019249:37666-37685 | None:intergenic | 45.0% | |
| CCACTCGAAGGAGAAATTGA+TGG | + | tig0019249:37853-37872 | None:intergenic | 45.0% | |
| CCATCAATTTCTCCTTCGAG+TGG | - | tig0019249:37850-37869 | Msa1371670:CDS | 45.0% | |
| CAGAAAGTTGCTCCAATGCA+GGG | + | tig0019249:37972-37991 | None:intergenic | 45.0% | |
| ACAGAAAGTTGCTCCAATGC+AGG | + | tig0019249:37973-37992 | None:intergenic | 45.0% | |
| GAGCAACTTTCTGTAACGGT+AGG | - | tig0019249:37979-37998 | Msa1371670:CDS | 45.0% | |
| TCTGCTCCGCAGTCAAATTT+AGG | - | tig0019249:38384-38403 | Msa1371670:CDS | 45.0% | |
| CTTGACGTCTCTATCTTTGG+AGG | + | tig0019249:38534-38553 | None:intergenic | 45.0% | |
| CCACTTGACGTCTCTATCTT+TGG | + | tig0019249:38537-38556 | None:intergenic | 45.0% | |
| CCAAAGATAGAGACGTCAAG+TGG | - | tig0019249:38534-38553 | Msa1371670:CDS | 45.0% | |
| CCACCTAGTAGATATGAGGC+TGG | + | tig0019249:36885-36904 | None:intergenic | 50.0% | |
| CCAGCCTCATATCTACTAGG+TGG | - | tig0019249:36882-36901 | Msa1371670:CDS | 50.0% | |
| GAGGAAGAGGTCCACGATAA+CGG | + | tig0019249:37405-37424 | None:intergenic | 50.0% | |
| GTGGACCTCTTCCTCAGATT+TGG | - | tig0019249:37410-37429 | Msa1371670:CDS | 50.0% | |
| TCTGGCCAAATCTGAGGAAG+AGG | + | tig0019249:37418-37437 | None:intergenic | 50.0% | |
| TGTCGAATACCGACACGTGT+CGG | + | tig0019249:37690-37709 | None:intergenic | 50.0% | |
| GACGTCAAGTGGGAGCAATT+TGG | - | tig0019249:38545-38564 | Msa1371670:CDS | 50.0% | |
| CCACCTAGTAGATATGAGGC+TGG | + | tig0019249:36885-36904 | None:intergenic | 50.0% | |
| CCAGCCTCATATCTACTAGG+TGG | - | tig0019249:36882-36901 | Msa1371670:CDS | 50.0% | |
| GAGGAAGAGGTCCACGATAA+CGG | + | tig0019249:37405-37424 | None:intergenic | 50.0% | |
| GTGGACCTCTTCCTCAGATT+TGG | - | tig0019249:37410-37429 | Msa1371670:CDS | 50.0% | |
| TCTGGCCAAATCTGAGGAAG+AGG | + | tig0019249:37418-37437 | None:intergenic | 50.0% | |
| TGTCGAATACCGACACGTGT+CGG | + | tig0019249:37690-37709 | None:intergenic | 50.0% | |
| GACGTCAAGTGGGAGCAATT+TGG | - | tig0019249:38545-38564 | Msa1371670:CDS | 50.0% | |
| TCAGACAAGGGCTAAGCTGC+AGG | - | tig0019249:37473-37492 | Msa1371670:CDS | 55.0% | |
| CAGACAAGGGCTAAGCTGCA+GGG | - | tig0019249:37474-37493 | Msa1371670:CDS | 55.0% | |
| TCAGACAAGGGCTAAGCTGC+AGG | - | tig0019249:37473-37492 | Msa1371670:CDS | 55.0% | |
| CAGACAAGGGCTAAGCTGCA+GGG | - | tig0019249:37474-37493 | Msa1371670:CDS | 55.0% | |
| GTCTGGTGTCCGACACGTGT+CGG | - | tig0019249:37678-37697 | Msa1371670:intron | 60.0% | |
| GTCTGGTGTCCGACACGTGT+CGG | - | tig0019249:37678-37697 | Msa1371670:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019249 | gene | 36788 | 38587 | 36788 | ID=Msa1371670;Name=Msa1371670 |
| tig0019249 | mRNA | 36788 | 38587 | 36788 | ID=Msa1371670-mRNA-1;Parent=Msa1371670;Name=Msa1371670-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|1|1|3|0|390 |
| tig0019249 | exon | 37796 | 38587 | 37796 | ID=Msa1371670-mRNA-1:exon:2428;Parent=Msa1371670-mRNA-1 |
| tig0019249 | exon | 37379 | 37537 | 37379 | ID=Msa1371670-mRNA-1:exon:2427;Parent=Msa1371670-mRNA-1 |
| tig0019249 | exon | 36788 | 37009 | 36788 | ID=Msa1371670-mRNA-1:exon:2426;Parent=Msa1371670-mRNA-1 |
| tig0019249 | CDS | 37796 | 38587 | 37796 | ID=Msa1371670-mRNA-1:cds;Parent=Msa1371670-mRNA-1 |
| tig0019249 | CDS | 37379 | 37537 | 37379 | ID=Msa1371670-mRNA-1:cds;Parent=Msa1371670-mRNA-1 |
| tig0019249 | CDS | 36788 | 37009 | 36788 | ID=Msa1371670-mRNA-1:cds;Parent=Msa1371670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
