AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0045760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045760 MtrunA17_Chr1g0212961 89.706 68 7 0 1 68 1 68 9.11e-38 128
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 94 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGAAGGCATCACAATAAT+TGG 0.203859 1_1:-77720505 None:intergenic
TCTTCTTGATTACTCCTATC+TGG 0.247650 1_1:+77724719 Msa0045760:three_prime_UTR
GATTACTCCTATCTGGAAAA+AGG 0.269762 1_1:+77724726 Msa0045760:three_prime_UTR
TAATTGCTAGTGATGGTCTT+TGG 0.271545 1_1:+77724006 Msa0045760:three_prime_UTR
TGACGCTCATCAGACCTATT+AGG 0.289937 1_1:-77723624 None:intergenic
CGGTGAGGGTTGATCTTTAT+CGG 0.325268 1_1:-77720473 None:intergenic
TTCAGTATGAACTCTTGATT+TGG 0.325450 1_1:-77720329 None:intergenic
AAGTAATTCATATGAAAATA+AGG 0.326323 1_1:-77724647 None:intergenic
CTTGCTGTTTCCCGTGCATT+TGG 0.327515 1_1:+77723797 Msa0045760:three_prime_UTR
TGTTGCTGACCCAGAAATTC+AGG 0.355237 1_1:+77723844 Msa0045760:three_prime_UTR
GGTTTGTGATCAACAGATAA+AGG 0.365657 1_1:-77723603 None:intergenic
TGATTACCTCAAAGAGGAAA+TGG 0.378429 1_1:+77723230 Msa0045760:three_prime_UTR
CAGTTGCCAGAAGTCGCATT+AGG 0.378672 1_1:-77724592 None:intergenic
CCTCTGAACAGATAAATTAC+AGG 0.379462 1_1:+77724826 Msa0045760:three_prime_UTR
CTGTTGATCACAAACCTAAT+AGG 0.382265 1_1:+77723610 Msa0045760:three_prime_UTR
ACCATCAACCTCTGATACTT+TGG 0.384660 1_1:-77722154 None:intergenic
CCACATCCTAATGCGACTTC+TGG 0.385086 1_1:+77724586 Msa0045760:three_prime_UTR
CGTGTCCCATTTCCTCTTTG+AGG 0.386355 1_1:-77723236 None:intergenic
CAACATTTGCAACAAGAATT+CGG 0.403403 1_1:-77723296 None:intergenic
TAAGGGTAAAAGATCTTCAA+TGG 0.412178 1_1:+77722116 Msa0045760:exon
AATTGCTAGTGATGGTCTTT+GGG 0.419224 1_1:+77724007 Msa0045760:three_prime_UTR
CTTAGTATCTGTGATAAAGT+TGG 0.420001 1_1:-77723037 None:intergenic
GGCATCAACAGCCGTGTTGT+TGG 0.422306 1_1:+77723269 Msa0045760:three_prime_UTR
GTTGCATCGAGAGCTGGTTT+AGG 0.423804 1_1:+77723333 Msa0045760:three_prime_UTR
TTGTAGATATCATCTGCATT+TGG 0.425120 1_1:+77724755 Msa0045760:three_prime_UTR
GCATCAACAGCCGTGTTGTT+GGG 0.428778 1_1:+77723270 Msa0045760:three_prime_UTR
AAATAGCTGGATCCGAGATA+TGG 0.431381 1_1:-77724795 None:intergenic
TTAGTATCTGTGATAAAGTT+GGG 0.434168 1_1:-77723036 None:intergenic
CTTGCGAGATGAGATACAAT+TGG 0.438168 1_1:+77720305 None:intergenic
TCTGGGTCAGCAACAACATA+TGG 0.444817 1_1:-77723836 None:intergenic
TTTAGCCAACCTGAATTTCT+GGG 0.448034 1_1:-77723853 None:intergenic
GGCCGTGGTGGCATGTTTGA+CGG 0.459320 1_1:-77720422 None:intergenic
CGAGTAGTTGCATCGAGAGC+TGG 0.468100 1_1:+77723327 Msa0045760:three_prime_UTR
TGAGCGTCAAAGGATTGAAC+AGG 0.479549 1_1:+77723638 Msa0045760:three_prime_UTR
CGAATTCTTGTTGCAAATGT+TGG 0.482689 1_1:+77723297 Msa0045760:three_prime_UTR
TGATGTTGTCTGAGCTTCCT+CGG 0.485200 1_1:-77724540 None:intergenic
GTCAAAGGATTGAACAGGCT+GGG 0.498918 1_1:+77723643 Msa0045760:three_prime_UTR
CGTCAAAGGATTGAACAGGC+TGG 0.505334 1_1:+77723642 Msa0045760:three_prime_UTR
TTTATAATAATTGCTAGTGA+TGG 0.513673 1_1:+77723999 Msa0045760:three_prime_UTR
CACATGAAGGCTCCATATCT+CGG 0.516872 1_1:+77724783 Msa0045760:three_prime_UTR
GCTTAGGAGGAAGAAGTTGA+AGG 0.518042 1_1:+77723969 Msa0045760:intron
CCAGAAGTCGCATTAGGATG+TGG 0.520632 1_1:-77724586 None:intergenic
GATGTTGTCTGAGCTTCCTC+GGG 0.522318 1_1:-77724539 None:intergenic
CTGCAGTTCGCGAACCTCCA+TGG 0.527402 1_1:-77722972 None:intergenic
AGAGGATCACAATAAATAGC+TGG 0.529113 1_1:-77724808 None:intergenic
GAGGTTGATGGTCAGATGGT+TGG 0.531607 1_1:+77722165 Msa0045760:three_prime_UTR
TTTATCGGAATATGCGGAGG+AGG 0.532838 1_1:-77720458 None:intergenic
TTCTTTAATAAGTTCTCTAG+AGG 0.533836 1_1:-77724509 None:intergenic
TATACAGGAACATGGAGGGT+TGG 0.534500 1_1:+77723767 Msa0045760:intron
AAATTTCTCTGATGCAGAAG+TGG 0.538449 1_1:+77724486 Msa0045760:three_prime_UTR
GATTACCTCAAAGAGGAAAT+GGG 0.540033 1_1:+77723231 Msa0045760:three_prime_UTR
ATCACAATAATTGGAGCTGA+TGG 0.540170 1_1:-77720496 None:intergenic
ACAGGAACATGGAGGGTTGG+CGG 0.545577 1_1:+77723770 Msa0045760:intron
AATGGGACACGCTGGGTCCA+CGG 0.547623 1_1:+77723248 Msa0045760:three_prime_UTR
TTAGCTTACTATCTGGAAGT+CGG 0.551096 1_1:+77722061 Msa0045760:intron
CTTTGAGACCAAAGTATCAG+AGG 0.553206 1_1:+77722146 Msa0045760:three_prime_UTR
CGGAATGGAAGGATCAGCTA+TGG 0.556545 1_1:+77722081 Msa0045760:CDS
TATCTGGAAGTCGGAATGGA+AGG 0.559940 1_1:+77722070 Msa0045760:CDS
TCAAAGGATTGAACAGGCTG+GGG 0.561209 1_1:+77723644 Msa0045760:three_prime_UTR
ATAGGTCTGATGAGCGTCAA+AGG 0.565284 1_1:+77723628 Msa0045760:three_prime_UTR
AAGAGGAAATGGGACACGCT+GGG 0.567223 1_1:+77723241 Msa0045760:three_prime_UTR
GGTGGCATGTTTGACGGAGT+CGG 0.571313 1_1:-77720416 None:intergenic
ATCAGAGGTTGATGGTCAGA+TGG 0.573226 1_1:+77722161 Msa0045760:three_prime_UTR
CCTGTAATTTATCTGTTCAG+AGG 0.574233 1_1:-77724826 None:intergenic
ACAGATACTAAGACAGCCAT+TGG 0.574333 1_1:+77723048 Msa0045760:three_prime_UTR
CAACACGGCTGTTGATGCCG+TGG 0.574866 1_1:-77723265 None:intergenic
AAAGAGGAAATGGGACACGC+TGG 0.577155 1_1:+77723240 Msa0045760:three_prime_UTR
AAGCTTGTCTCCAAATGCAC+GGG 0.577852 1_1:-77723807 None:intergenic
TTACTATCTGGAAGTCGGAA+TGG 0.578506 1_1:+77722066 Msa0045760:CDS
GAAGCTTGTCTCCAAATGCA+CGG 0.588102 1_1:-77723808 None:intergenic
CAAAGGATTGAACAGGCTGG+GGG 0.588768 1_1:+77723645 Msa0045760:three_prime_UTR
TGCTGGTTTATACAGGAACA+TGG 0.590214 1_1:+77723759 Msa0045760:intron
ACCAAAGTATCAGAGGTTGA+TGG 0.597378 1_1:+77722153 Msa0045760:three_prime_UTR
GGAGGAAGAAGTTGAAGGCG+TGG 0.598676 1_1:+77723974 Msa0045760:intron
AAACATGCCACCACGGCCGT+CGG 0.599926 1_1:+77720427 Msa0045760:CDS
ATCTTTATCGGAATATGCGG+AGG 0.604581 1_1:-77720461 None:intergenic
GGTTTATACAGGAACATGGA+GGG 0.611021 1_1:+77723763 Msa0045760:intron
AGACGTTGATTACCTCAAAG+AGG 0.613566 1_1:+77723224 Msa0045760:three_prime_UTR
ATTGGAGCTGATGGCGGTGA+GGG 0.618148 1_1:-77720487 None:intergenic
TAGTATCTGTGATAAAGTTG+GGG 0.629686 1_1:-77723035 None:intergenic
AAATAGAAATGACAAATGTG+TGG 0.630304 1_1:+77724615 Msa0045760:three_prime_UTR
AATTGGAGCTGATGGCGGTG+AGG 0.633682 1_1:-77720488 None:intergenic
ATTAAAGAAGCTTATACCCG+AGG 0.634248 1_1:+77724523 Msa0045760:three_prime_UTR
TTGATCTTTATCGGAATATG+CGG 0.635588 1_1:-77720464 None:intergenic
CTCCGTCAAACATGCCACCA+CGG 0.637279 1_1:+77720420 Msa0045760:CDS
TATCTGTGATAAAGTTGGGG+TGG 0.641380 1_1:-77723032 None:intergenic
GGGTAAAAGATCTTCAATGG+AGG 0.642494 1_1:+77722119 Msa0045760:three_prime_UTR
ACAATAATTGGAGCTGATGG+CGG 0.645803 1_1:-77720493 None:intergenic
AATAGAAATGACAAATGTGT+GGG 0.660964 1_1:+77724616 Msa0045760:three_prime_UTR
TGGTTTATACAGGAACATGG+AGG 0.666436 1_1:+77723762 Msa0045760:intron
AATTCGGTCGCCCAACAACA+CGG 0.676568 1_1:-77723280 None:intergenic
AAAGGATTGAACAGGCTGGG+GGG 0.681345 1_1:+77723646 Msa0045760:three_prime_UTR
TTATAACATCATATCCACGA+TGG 0.688589 1_1:-77720381 None:intergenic
TTGGGATGTTATATCAAACG+AGG 0.704343 1_1:+77724025 Msa0045760:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAACATAAAATGATT+GGG - chr1_1:77721967-77721986 None:intergenic 10.0%
!!! ATGTTTAATTATTTGTTTTA+TGG + chr1_1:77723179-77723198 Msa0045760:intron 10.0%
!! ATTCCATTAAAAGAAAAATT+TGG + chr1_1:77721727-77721746 Msa0045760:intron 15.0%
!! TTCCATTAAAAGAAAAATTT+GGG + chr1_1:77721728-77721747 Msa0045760:intron 15.0%
!! GTATAAAAACATAAAATGAT+TGG - chr1_1:77721968-77721987 None:intergenic 15.0%
!!! ATCATTTTATGTTTTTATAC+CGG + chr1_1:77721968-77721987 Msa0045760:intron 15.0%
!! AGAATAAACCATAAAAAATT+GGG - chr1_1:77722280-77722299 None:intergenic 15.0%
!! TAGAATAAACCATAAAAAAT+TGG - chr1_1:77722281-77722300 None:intergenic 15.0%
!! AAGTAATTCATATGAAAATA+AGG - chr1_1:77724650-77724669 None:intergenic 15.0%
!! AAATTTACACAAGTGATTTA+AGG + chr1_1:77720653-77720672 Msa0045760:intron 20.0%
!! ATATGTAGCATATAAATTCA+TGG - chr1_1:77720714-77720733 None:intergenic 20.0%
!!! ATTTATTATCCTTTACCTTT+TGG - chr1_1:77721019-77721038 None:intergenic 20.0%
!! AAGAAAGTAAAAATTCACTT+TGG - chr1_1:77721048-77721067 None:intergenic 20.0%
!! GATGATAGCAAAATTATTTA+TGG + chr1_1:77721352-77721371 Msa0045760:intron 20.0%
!!! GTTAAAGCATTAATATTAAG+AGG - chr1_1:77722237-77722256 None:intergenic 20.0%
!! GAATAAACCATAAAAAATTG+GGG - chr1_1:77722279-77722298 None:intergenic 20.0%
!! TTCATCTATTAAGTTATCAA+GGG - chr1_1:77722454-77722473 None:intergenic 20.0%
!! GATCTAATCAAATCTTAAAA+GGG - chr1_1:77722849-77722868 None:intergenic 20.0%
!! TGATCTAATCAAATCTTAAA+AGG - chr1_1:77722850-77722869 None:intergenic 20.0%
!!! TTTAAGATTTGATTAGATCA+TGG + chr1_1:77722850-77722869 Msa0045760:intron 20.0%
!!! CATTCTTTTCAATTTTAGAA+TGG - chr1_1:77722885-77722904 None:intergenic 20.0%
!! CAAAACTGAATTAAACTAAA+GGG - chr1_1:77723454-77723473 None:intergenic 20.0%
!! TTAAGAACCATAAAAACAAA+TGG - chr1_1:77723713-77723732 None:intergenic 20.0%
!!! TATAACAATGAATAATTTGC+TGG + chr1_1:77723742-77723761 Msa0045760:intron 20.0%
!! TAAAAACATATACACAAAGT+GGG - chr1_1:77723903-77723922 None:intergenic 20.0%
!! ATAAAAACATATACACAAAG+TGG - chr1_1:77723904-77723923 None:intergenic 20.0%
!! TTTATAATAATTGCTAGTGA+TGG + chr1_1:77723999-77724018 Msa0045760:three_prime_UTR 20.0%
!!! GCTTTAAACATATCATTATT+GGG - chr1_1:77724107-77724126 None:intergenic 20.0%
!!! TGCTTTAAACATATCATTAT+TGG - chr1_1:77724108-77724127 None:intergenic 20.0%
!! ATGGCAATATTAATATGTAA+TGG - chr1_1:77724174-77724193 None:intergenic 20.0%
!! ACATATTAATATTGCCATAT+CGG + chr1_1:77724176-77724195 Msa0045760:intron 20.0%
!! ATACATATATTTCTTGTACT+TGG + chr1_1:77724239-77724258 Msa0045760:intron 20.0%
!!! GAATTCTAAATTTTATACTC+CGG + chr1_1:77724358-77724377 Msa0045760:intron 20.0%
!! AGTATTTGAAGTGTGATTTA+AGG + chr1_1:77720607-77720626 Msa0045760:intron 25.0%
! TATCATTGAATATTCGATCA+AGG - chr1_1:77720777-77720796 None:intergenic 25.0%
! CTTTGTAACTATTAATTCAC+AGG + chr1_1:77720877-77720896 Msa0045760:intron 25.0%
! ACATATAGTTTCACAGATAT+TGG - chr1_1:77720930-77720949 None:intergenic 25.0%
! AATCACAATAGTAGTGTATT+AGG + chr1_1:77720963-77720982 Msa0045760:intron 25.0%
! AGATCAAATAGCATTTAACA+GGG - chr1_1:77721204-77721223 None:intergenic 25.0%
! TCGAAATAACCTAATTAAGT+AGG - chr1_1:77721603-77721622 None:intergenic 25.0%
!! GTCCCAAATTTTTCTTTTAA+TGG - chr1_1:77721733-77721752 None:intergenic 25.0%
!!! TTTACTTTTAGCTTACTATC+TGG + chr1_1:77722054-77722073 Msa0045760:intron 25.0%
!!! TATGGATATTCCAGTTTTAA+GGG + chr1_1:77722099-77722118 Msa0045760:CDS 25.0%
!! CTTTAACTATATTTTCCTCT+TGG + chr1_1:77722250-77722269 Msa0045760:intron 25.0%
! GTTCATCTATTAAGTTATCA+AGG - chr1_1:77722455-77722474 None:intergenic 25.0%
! AACAAGGATTCCTATAAAAT+TGG + chr1_1:77722699-77722718 Msa0045760:intron 25.0%
! ACAAGGATTCCTATAAAATT+GGG + chr1_1:77722700-77722719 Msa0045760:intron 25.0%
!! AGTATATGCAAATCTTTTGA+CGG + chr1_1:77722747-77722766 Msa0045760:intron 25.0%
! AATCAAATCTTAAAAGGGTT+TGG - chr1_1:77722844-77722863 None:intergenic 25.0%
! ATTCAAAAAGATGCATGAAA+AGG - chr1_1:77722931-77722950 None:intergenic 25.0%
!!! TTTTTAATCTTTTTAGGCCA+TGG + chr1_1:77722955-77722974 Msa0045760:intron 25.0%
! TTAGTATCTGTGATAAAGTT+GGG - chr1_1:77723039-77723058 None:intergenic 25.0%
! CTTCATTTGCGTTAAATTAT+AGG + chr1_1:77723077-77723096 Msa0045760:intron 25.0%
!!! TGTGGATTTTTTTAATACAG+CGG + chr1_1:77723402-77723421 Msa0045760:intron 25.0%
! GCAAAACTGAATTAAACTAA+AGG - chr1_1:77723455-77723474 None:intergenic 25.0%
! AAAAACACAAGGATGAAAAT+AGG - chr1_1:77723542-77723561 None:intergenic 25.0%
! TTGAAAAGAAGAAAAACACA+AGG - chr1_1:77723553-77723572 None:intergenic 25.0%
! GCAGGTAAATTTCATTTATA+TGG + chr1_1:77723681-77723700 Msa0045760:intron 25.0%
!!! AATAATTTGCTGGTTTATAC+AGG + chr1_1:77723752-77723771 Msa0045760:intron 25.0%
! AGGTGAGACTATTTATATTA+TGG + chr1_1:77724045-77724064 Msa0045760:intron 25.0%
! GGTGAGACTATTTATATTAT+GGG + chr1_1:77724046-77724065 Msa0045760:intron 25.0%
! AAAATAAAACAATGCCGATA+TGG - chr1_1:77724193-77724212 None:intergenic 25.0%
! TCATTCGCATAAACAAATAT+TGG + chr1_1:77724304-77724323 Msa0045760:intron 25.0%
!! TATGCACTATATATCTTTTC+AGG + chr1_1:77724444-77724463 Msa0045760:intron 25.0%
! TTCTTTAATAAGTTCTCTAG+AGG - chr1_1:77724512-77724531 None:intergenic 25.0%
! AAATAGAAATGACAAATGTG+TGG + chr1_1:77724615-77724634 Msa0045760:three_prime_UTR 25.0%
! AATAGAAATGACAAATGTGT+GGG + chr1_1:77724616-77724635 Msa0045760:three_prime_UTR 25.0%
TTCAGTATGAACTCTTGATT+TGG - chr1_1:77720332-77720351 None:intergenic 30.0%
TTATAACATCATATCCACGA+TGG - chr1_1:77720384-77720403 None:intergenic 30.0%
TTGATCTTTATCGGAATATG+CGG - chr1_1:77720467-77720486 None:intergenic 30.0%
!! TTAGAAGGCATCACAATAAT+TGG - chr1_1:77720508-77720527 None:intergenic 30.0%
! GGAAGTGTGATGTAAAAATT+AGG + chr1_1:77721108-77721127 Msa0045760:intron 30.0%
GACAGAGCATATAGTAATTT+GGG + chr1_1:77721169-77721188 Msa0045760:intron 30.0%
CAGATCAAATAGCATTTAAC+AGG - chr1_1:77721205-77721224 None:intergenic 30.0%
!! TGTGCAATGTTATTTCCTTA+AGG + chr1_1:77721825-77721844 Msa0045760:intron 30.0%
TTCAAAGATTTGAGAGTTGA+AGG - chr1_1:77721994-77722013 None:intergenic 30.0%
! CTATGGATATTCCAGTTTTA+AGG + chr1_1:77722098-77722117 Msa0045760:CDS 30.0%
! AGATCTTTTACCCTTAAAAC+TGG - chr1_1:77722112-77722131 None:intergenic 30.0%
TAAGGGTAAAAGATCTTCAA+TGG + chr1_1:77722116-77722135 Msa0045760:exon 30.0%
!!! TTGGTTTCCCCAATTTTTTA+TGG + chr1_1:77722269-77722288 Msa0045760:intron 30.0%
TGGTTTATTCTATTCGTCAT+AGG + chr1_1:77722289-77722308 Msa0045760:intron 30.0%
AAGAGACAATCTTACTCTAT+AGG - chr1_1:77722336-77722355 None:intergenic 30.0%
TGAATACACCTTTACTTGTT+CGG - chr1_1:77722361-77722380 None:intergenic 30.0%
! ATTCACCGTTTGGAATTATT+AGG + chr1_1:77722576-77722595 Msa0045760:intron 30.0%
!!! TGGTTTTGGTTAAGGTTTTA+TGG + chr1_1:77722625-77722644 Msa0045760:intron 30.0%
AGCAAAAGAATTCTGTGTAA+TGG + chr1_1:77722648-77722667 Msa0045760:intron 30.0%
GCAAAAGAATTCTGTGTAAT+GGG + chr1_1:77722649-77722668 Msa0045760:intron 30.0%
CAAAAGAATTCTGTGTAATG+GGG + chr1_1:77722650-77722669 Msa0045760:intron 30.0%
TAGTATCTGTGATAAAGTTG+GGG - chr1_1:77723038-77723057 None:intergenic 30.0%
CTTAGTATCTGTGATAAAGT+TGG - chr1_1:77723040-77723059 None:intergenic 30.0%
TTGCGTTAAATTATAGGACA+TGG + chr1_1:77723083-77723102 Msa0045760:intron 30.0%
CTTATCACATTATAGTTGTG+TGG + chr1_1:77723115-77723134 Msa0045760:intron 30.0%
! AGTTCATATTTAGAACATCC+AGG - chr1_1:77723153-77723172 None:intergenic 30.0%
CAACATTTGCAACAAGAATT+CGG - chr1_1:77723299-77723318 None:intergenic 30.0%
TTTAATACAGCGGTCAATAA+AGG + chr1_1:77723412-77723431 Msa0045760:intron 30.0%
TTAATACAGCGGTCAATAAA+GGG + chr1_1:77723413-77723432 Msa0045760:intron 30.0%
!!! GATGTTGCCATTTGTTTTTA+TGG + chr1_1:77723703-77723722 Msa0045760:intron 30.0%
TATATTATGGGCCAACAAAT+AGG + chr1_1:77724058-77724077 Msa0045760:intron 30.0%
ATATTATGGGCCAACAAATA+GGG + chr1_1:77724059-77724078 Msa0045760:intron 30.0%
TTATTGGGTGAAATTCATGT+GGG - chr1_1:77724092-77724111 None:intergenic 30.0%
ATTATTGGGTGAAATTCATG+TGG - chr1_1:77724093-77724112 None:intergenic 30.0%
CATATATTTCTTGTACTTGG+CGG + chr1_1:77724242-77724261 Msa0045760:intron 30.0%
AGTGCATATTATTAGATGCT+CGG - chr1_1:77724432-77724451 None:intergenic 30.0%
! AGTATTTCCTTTTTCCAGAT+AGG - chr1_1:77724736-77724755 None:intergenic 30.0%
TTGTAGATATCATCTGCATT+TGG + chr1_1:77724755-77724774 Msa0045760:three_prime_UTR 30.0%
ATCACAATAATTGGAGCTGA+TGG - chr1_1:77720499-77720518 None:intergenic 35.0%
AGAGAATCGTGATCTTTAGA+AGG - chr1_1:77720523-77720542 None:intergenic 35.0%
! CAGTGTTACTCTTACTCATA+AGG - chr1_1:77720813-77720832 None:intergenic 35.0%
CTTATGAGTAAGAGTAACAC+TGG + chr1_1:77720811-77720830 Msa0045760:intron 35.0%
! AAGTGGCTAAAAAAGTTGGT+GGG - chr1_1:77720847-77720866 None:intergenic 35.0%
CATCAAGTGGCTAAAAAAGT+TGG - chr1_1:77720851-77720870 None:intergenic 35.0%
!!! TTTTTTAGCCACTTGATGCT+TGG + chr1_1:77720853-77720872 Msa0045760:intron 35.0%
ACGTTCAAACCAAAAGGTAA+AGG + chr1_1:77721007-77721026 Msa0045760:intron 35.0%
CGACAGAGCATATAGTAATT+TGG + chr1_1:77721168-77721187 Msa0045760:intron 35.0%
ACCTTGAATTGTCATTGTCA+GGG - chr1_1:77721242-77721261 None:intergenic 35.0%
AACCTTGAATTGTCATTGTC+AGG - chr1_1:77721243-77721262 None:intergenic 35.0%
CTAATTAAGTAGGATCGAGA+AGG - chr1_1:77721593-77721612 None:intergenic 35.0%
CTTCTCGATCCTACTTAATT+AGG + chr1_1:77721591-77721610 Msa0045760:intron 35.0%
CAACACACAAAATCACAACT+AGG - chr1_1:77721627-77721646 None:intergenic 35.0%
! TTGCCATCAGCTATAGATTT+TGG - chr1_1:77721796-77721815 None:intergenic 35.0%
CCATTGCATATAATGCCAAT+GGG - chr1_1:77721893-77721912 None:intergenic 35.0%
ACCATTGCATATAATGCCAA+TGG - chr1_1:77721894-77721913 None:intergenic 35.0%
TTAGCTTACTATCTGGAAGT+CGG + chr1_1:77722061-77722080 Msa0045760:intron 35.0%
!!! GGCTTTTTTGGTGTTTTTGA+TGG + chr1_1:77722186-77722205 Msa0045760:three_prime_UTR 35.0%
!! TGTTTTTGATGGTATGTCCT+AGG + chr1_1:77722197-77722216 Msa0045760:intron 35.0%
!! GTTTTTGATGGTATGTCCTA+GGG + chr1_1:77722198-77722217 Msa0045760:intron 35.0%
AGGTACAAAACAAAAACCCT+AGG - chr1_1:77722217-77722236 None:intergenic 35.0%
AAAAAATTGGGGAAACCAAG+AGG - chr1_1:77722268-77722287 None:intergenic 35.0%
GTGTATTCAGTATTCACTGT+TGG + chr1_1:77722372-77722391 Msa0045760:intron 35.0%
!! AGAGCTTTTTCCAATATGCT+TGG + chr1_1:77722485-77722504 Msa0045760:intron 35.0%
!! GAGCTTTTTCCAATATGCTT+GGG + chr1_1:77722486-77722505 Msa0045760:intron 35.0%
GTAATTGAACCCAAGCATAT+TGG - chr1_1:77722498-77722517 None:intergenic 35.0%
TATGCTTGGGTTCAATTACT+AGG + chr1_1:77722499-77722518 Msa0045760:intron 35.0%
TGCTGCCTAATAATTCCAAA+CGG - chr1_1:77722584-77722603 None:intergenic 35.0%
!!! TTGTAGGATGGTTTTGGTTA+AGG + chr1_1:77722617-77722636 Msa0045760:intron 35.0%
AGGATTCCTATAAAATTGGG+AGG + chr1_1:77722703-77722722 Msa0045760:intron 35.0%
GGATTCCTATAAAATTGGGA+GGG + chr1_1:77722704-77722723 Msa0045760:intron 35.0%
AATGCTTTGTACAGCAAAGA+GGG + chr1_1:77722799-77722818 Msa0045760:intron 35.0%
!! TTAATCTTTTTAGGCCATGG+AGG + chr1_1:77722958-77722977 Msa0045760:intron 35.0%
GCAAATGAAGTACATACCAA+TGG - chr1_1:77723067-77723086 None:intergenic 35.0%
CACATTATAGTTGTGTGGTT+TGG + chr1_1:77723120-77723139 Msa0045760:intron 35.0%
TGATTACCTCAAAGAGGAAA+TGG + chr1_1:77723230-77723249 Msa0045760:three_prime_UTR 35.0%
GATTACCTCAAAGAGGAAAT+GGG + chr1_1:77723231-77723250 Msa0045760:three_prime_UTR 35.0%
CGAATTCTTGTTGCAAATGT+TGG + chr1_1:77723297-77723316 Msa0045760:three_prime_UTR 35.0%
GAATTAGATTGGACACAATG+TGG + chr1_1:77723384-77723403 Msa0045760:intron 35.0%
GGTTTGTGATCAACAGATAA+AGG - chr1_1:77723606-77723625 None:intergenic 35.0%
CTGTTGATCACAAACCTAAT+AGG + chr1_1:77723610-77723629 Msa0045760:three_prime_UTR 35.0%
TTTAGCCAACCTGAATTTCT+GGG - chr1_1:77723856-77723875 None:intergenic 35.0%
! TTTTAGCCAACCTGAATTTC+TGG - chr1_1:77723857-77723876 None:intergenic 35.0%
AACATATACACAAAGTGGGT+AGG - chr1_1:77723899-77723918 None:intergenic 35.0%
CTACTAATTTATCCCCTCTT+TGG + chr1_1:77723935-77723954 Msa0045760:intron 35.0%
!!! TTTGGATACTCTTTTGGCTT+AGG + chr1_1:77723953-77723972 Msa0045760:intron 35.0%
TAATTGCTAGTGATGGTCTT+TGG + chr1_1:77724006-77724025 Msa0045760:three_prime_UTR 35.0%
AATTGCTAGTGATGGTCTTT+GGG + chr1_1:77724007-77724026 Msa0045760:three_prime_UTR 35.0%
TTGGGATGTTATATCAAACG+AGG + chr1_1:77724025-77724044 Msa0045760:three_prime_UTR 35.0%
! AATTTTATACTCCGGCAACT+TGG + chr1_1:77724366-77724385 Msa0045760:intron 35.0%
!!! ACTTGGTGTTGGTACATTTT+CGG + chr1_1:77724383-77724402 Msa0045760:intron 35.0%
GTGCATATTATTAGATGCTC+GGG - chr1_1:77724431-77724450 None:intergenic 35.0%
!! GCACTATATATCTTTTCAGG+AGG + chr1_1:77724447-77724466 Msa0045760:intron 35.0%
!! CTATATATCTTTTCAGGAGG+CGG + chr1_1:77724450-77724469 Msa0045760:intron 35.0%
AAATTTCTCTGATGCAGAAG+TGG + chr1_1:77724486-77724505 Msa0045760:three_prime_UTR 35.0%
ATTAAAGAAGCTTATACCCG+AGG + chr1_1:77724523-77724542 Msa0045760:three_prime_UTR 35.0%
TCTTCTTGATTACTCCTATC+TGG + chr1_1:77724719-77724738 Msa0045760:three_prime_UTR 35.0%
GATTACTCCTATCTGGAAAA+AGG + chr1_1:77724726-77724745 Msa0045760:three_prime_UTR 35.0%
!!! GCATTTGGTTTTACACATGA+AGG + chr1_1:77724770-77724789 Msa0045760:three_prime_UTR 35.0%
AGAGGATCACAATAAATAGC+TGG - chr1_1:77724811-77724830 None:intergenic 35.0%
CCTGTAATTTATCTGTTCAG+AGG - chr1_1:77724829-77724848 None:intergenic 35.0%
CCTCTGAACAGATAAATTAC+AGG + chr1_1:77724826-77724845 Msa0045760:three_prime_UTR 35.0%
ATCTTTATCGGAATATGCGG+AGG - chr1_1:77720464-77720483 None:intergenic 40.0%
ACAATAATTGGAGCTGATGG+CGG - chr1_1:77720496-77720515 None:intergenic 40.0%
CAAGTGGCTAAAAAAGTTGG+TGG - chr1_1:77720848-77720867 None:intergenic 40.0%
TACAAAGTCCAAGCATCAAG+TGG - chr1_1:77720864-77720883 None:intergenic 40.0%
TGTAGCTTGAAACCCAGAAT+AGG + chr1_1:77721086-77721105 Msa0045760:intron 40.0%
GTAGCTTGAAACCCAGAATA+GGG + chr1_1:77721087-77721106 Msa0045760:intron 40.0%
ACATCACACTTCCCTATTCT+GGG - chr1_1:77721101-77721120 None:intergenic 40.0%
TACATCACACTTCCCTATTC+TGG - chr1_1:77721102-77721121 None:intergenic 40.0%
TCCCTGACAATGACAATTCA+AGG + chr1_1:77721238-77721257 Msa0045760:intron 40.0%
TGTGCTATCCTGAGTGTTTA+TGG + chr1_1:77721395-77721414 Msa0045760:intron 40.0%
ATTCGAGTCCATAAACACTC+AGG - chr1_1:77721406-77721425 None:intergenic 40.0%
GAATTTACTCGAGTCATGTG+CGG + chr1_1:77721422-77721441 Msa0045760:intron 40.0%
!! ATCAGCTATAGATTTTGGCC+TGG - chr1_1:77721791-77721810 None:intergenic 40.0%
AGGCCAAAATCTATAGCTGA+TGG + chr1_1:77721790-77721809 Msa0045760:intron 40.0%
CCCATTGGCATTATATGCAA+TGG + chr1_1:77721890-77721909 Msa0045760:intron 40.0%
AATGATTGGGTGACATTCGA+GGG - chr1_1:77721954-77721973 None:intergenic 40.0%
AAATGATTGGGTGACATTCG+AGG - chr1_1:77721955-77721974 None:intergenic 40.0%
AAGATTTGAGAGTTGAAGGC+CGG - chr1_1:77721990-77722009 None:intergenic 40.0%
TTACTATCTGGAAGTCGGAA+TGG + chr1_1:77722066-77722085 Msa0045760:CDS 40.0%
GGGTAAAAGATCTTCAATGG+AGG + chr1_1:77722119-77722138 Msa0045760:three_prime_UTR 40.0%
!! CTTTGAGACCAAAGTATCAG+AGG + chr1_1:77722146-77722165 Msa0045760:three_prime_UTR 40.0%
! ACCAAAGTATCAGAGGTTGA+TGG + chr1_1:77722153-77722172 Msa0045760:three_prime_UTR 40.0%
ACCATCAACCTCTGATACTT+TGG - chr1_1:77722157-77722176 None:intergenic 40.0%
! ACTCTATAGGAGTCTTATCC+TGG - chr1_1:77722323-77722342 None:intergenic 40.0%
TCTCTTAGCCGAACAAGTAA+AGG + chr1_1:77722350-77722369 Msa0045760:intron 40.0%
AGCAGTGCGTAATAAGATCA+TGG - chr1_1:77722414-77722433 None:intergenic 40.0%
! TAGAGCATCAGAAATGAGCT+TGG + chr1_1:77722545-77722564 Msa0045760:intron 40.0%
! TACGAGTTGTAGGATGGTTT+TGG + chr1_1:77722611-77722630 Msa0045760:intron 40.0%
TCATGGTTCTCAACTCAACA+AGG + chr1_1:77722683-77722702 Msa0045760:intron 40.0%
CAATGCTTTGTACAGCAAAG+AGG + chr1_1:77722798-77722817 Msa0045760:intron 40.0%
TATCTGTGATAAAGTTGGGG+TGG - chr1_1:77723035-77723054 None:intergenic 40.0%
ACAGATACTAAGACAGCCAT+TGG + chr1_1:77723048-77723067 Msa0045760:three_prime_UTR 40.0%
! AGACGTTGATTACCTCAAAG+AGG + chr1_1:77723224-77723243 Msa0045760:three_prime_UTR 40.0%
AGTTCCATGTCAATTACGTG+TGG + chr1_1:77723358-77723377 Msa0045760:intron 40.0%
GTTCCATGTCAATTACGTGT+GGG + chr1_1:77723359-77723378 Msa0045760:intron 40.0%
ACGTGTGGGAAGAATTAGAT+TGG + chr1_1:77723373-77723392 Msa0045760:intron 40.0%
!! TGCTGGTTTATACAGGAACA+TGG + chr1_1:77723759-77723778 Msa0045760:intron 40.0%
TGGTTTATACAGGAACATGG+AGG + chr1_1:77723762-77723781 Msa0045760:intron 40.0%
GGTTTATACAGGAACATGGA+GGG + chr1_1:77723763-77723782 Msa0045760:intron 40.0%
!! CCAAAAGAGTATCCAAAGAG+GGG - chr1_1:77723950-77723969 None:intergenic 40.0%
!! GCCAAAAGAGTATCCAAAGA+GGG - chr1_1:77723951-77723970 None:intergenic 40.0%
!! AGCCAAAAGAGTATCCAAAG+AGG - chr1_1:77723952-77723971 None:intergenic 40.0%
AAATAGCTGGATCCGAGATA+TGG - chr1_1:77724798-77724817 None:intergenic 40.0%
! AGTACTTTTCTCGTCCATCG+TGG + chr1_1:77720367-77720386 Msa0045760:CDS 45.0%
TTTATCGGAATATGCGGAGG+AGG - chr1_1:77720461-77720480 None:intergenic 45.0%
! CGGTGAGGGTTGATCTTTAT+CGG - chr1_1:77720476-77720495 None:intergenic 45.0%
GATCACGATTCTCTCTTCAG+TGG + chr1_1:77720529-77720548 Msa0045760:intron 45.0%
!! GCTAAAAAAGTTGGTGGGAG+GGG - chr1_1:77720842-77720861 None:intergenic 45.0%
!! GGCTAAAAAAGTTGGTGGGA+GGG - chr1_1:77720843-77720862 None:intergenic 45.0%
!! TGGCTAAAAAAGTTGGTGGG+AGG - chr1_1:77720844-77720863 None:intergenic 45.0%
!!! CCTTTTGGTTTGAACGTCGT+AGG - chr1_1:77721004-77721023 None:intergenic 45.0%
CCTACGACGTTCAAACCAAA+AGG + chr1_1:77721001-77721020 Msa0045760:intron 45.0%
ATCTTGCACGCGATTCAGAT+TGG - chr1_1:77721324-77721343 None:intergenic 45.0%
GTTTCTGACCAAGATCAGGA+GGG - chr1_1:77721663-77721682 None:intergenic 45.0%
AGTTTCTGACCAAGATCAGG+AGG - chr1_1:77721664-77721683 None:intergenic 45.0%
TCGAGTTTCTGACCAAGATC+AGG - chr1_1:77721667-77721686 None:intergenic 45.0%
GACATGTGAAATTGCCGTGT+TGG + chr1_1:77721750-77721769 Msa0045760:intron 45.0%
GGTAAGCACTTGATCCAACA+CGG - chr1_1:77721767-77721786 None:intergenic 45.0%
!! AGCTATAGATTTTGGCCTGG+AGG - chr1_1:77721788-77721807 None:intergenic 45.0%
!!! TTTTGCTGGCTTTCATGCGT+GGG - chr1_1:77721931-77721950 None:intergenic 45.0%
TATCTGGAAGTCGGAATGGA+AGG + chr1_1:77722070-77722089 Msa0045760:CDS 45.0%
!! ATCAGAGGTTGATGGTCAGA+TGG + chr1_1:77722161-77722180 Msa0045760:three_prime_UTR 45.0%
!!! GGTCAGATGGTTGGCTTTTT+TGG + chr1_1:77722174-77722193 Msa0045760:three_prime_UTR 45.0%
GGTAGACGATATTCACCGTT+TGG + chr1_1:77722566-77722585 Msa0045760:intron 45.0%
TGGAATTATTAGGCAGCAGC+AGG + chr1_1:77722586-77722605 Msa0045760:intron 45.0%
! TCTGTGTAATGGGGAAGACA+AGG + chr1_1:77722659-77722678 Msa0045760:intron 45.0%
! GTACGCCCTCCCAATTTTAT+AGG - chr1_1:77722712-77722731 None:intergenic 45.0%
CTTCCCACACGTAATTGACA+TGG - chr1_1:77723365-77723384 None:intergenic 45.0%
TGACGCTCATCAGACCTATT+AGG - chr1_1:77723627-77723646 None:intergenic 45.0%
ATAGGTCTGATGAGCGTCAA+AGG + chr1_1:77723628-77723647 Msa0045760:three_prime_UTR 45.0%
TGAGCGTCAAAGGATTGAAC+AGG + chr1_1:77723638-77723657 Msa0045760:three_prime_UTR 45.0%
GTCAAAGGATTGAACAGGCT+GGG + chr1_1:77723643-77723662 Msa0045760:three_prime_UTR 45.0%
TCAAAGGATTGAACAGGCTG+GGG + chr1_1:77723644-77723663 Msa0045760:three_prime_UTR 45.0%
TATACAGGAACATGGAGGGT+TGG + chr1_1:77723767-77723786 Msa0045760:intron 45.0%
AAGCTTGTCTCCAAATGCAC+GGG - chr1_1:77723810-77723829 None:intergenic 45.0%
GAAGCTTGTCTCCAAATGCA+CGG - chr1_1:77723811-77723830 None:intergenic 45.0%
TCTGGGTCAGCAACAACATA+TGG - chr1_1:77723839-77723858 None:intergenic 45.0%
TGTTGCTGACCCAGAAATTC+AGG + chr1_1:77723844-77723863 Msa0045760:three_prime_UTR 45.0%
! CCCCTCTTTGGATACTCTTT+TGG + chr1_1:77723947-77723966 Msa0045760:intron 45.0%
!!! GGATACTCTTTTGGCTTAGG+AGG + chr1_1:77723956-77723975 Msa0045760:intron 45.0%
GCTTAGGAGGAAGAAGTTGA+AGG + chr1_1:77723969-77723988 Msa0045760:intron 45.0%
ATGTACCAACACCAAGTTGC+CGG - chr1_1:77724380-77724399 None:intergenic 45.0%
TGATGTTGTCTGAGCTTCCT+CGG - chr1_1:77724543-77724562 None:intergenic 45.0%
CACATGAAGGCTCCATATCT+CGG + chr1_1:77724783-77724802 Msa0045760:three_prime_UTR 45.0%
!!! ATTAATTTTTTAATCTTTTT+AGG + chr1_1:77722949-77722968 Msa0045760:intron 5.0%
!!! GGAGGAGGTTTTTTCTCCGA+CGG - chr1_1:77720446-77720465 None:intergenic 50.0%
CACGATTCTCTCTTCAGTGG+CGG + chr1_1:77720532-77720551 Msa0045760:intron 50.0%
TCAGATTGGAAGGGGTGAGT+AGG - chr1_1:77721310-77721329 None:intergenic 50.0%
CACGCGATTCAGATTGGAAG+GGG - chr1_1:77721318-77721337 None:intergenic 50.0%
GCACGCGATTCAGATTGGAA+GGG - chr1_1:77721319-77721338 None:intergenic 50.0%
TGCACGCGATTCAGATTGGA+AGG - chr1_1:77721320-77721339 None:intergenic 50.0%
TGGATCAAGTGCTTACCTCC+AGG + chr1_1:77721770-77721789 Msa0045760:intron 50.0%
GCAAACGCTAAAGCTAGACG+CGG - chr1_1:77721861-77721880 None:intergenic 50.0%
TTTCATGCGTGGGATTCAGC+AGG - chr1_1:77721921-77721940 None:intergenic 50.0%
!!! GTTTTGCTGGCTTTCATGCG+TGG - chr1_1:77721932-77721951 None:intergenic 50.0%
! GTGACATTCGAGGGTTTTGC+TGG - chr1_1:77721945-77721964 None:intergenic 50.0%
CGGAATGGAAGGATCAGCTA+TGG + chr1_1:77722081-77722100 Msa0045760:CDS 50.0%
!! GAGGTTGATGGTCAGATGGT+TGG + chr1_1:77722165-77722184 Msa0045760:three_prime_UTR 50.0%
TCGTCATAGGACAATCTGCC+AGG + chr1_1:77722302-77722321 Msa0045760:intron 50.0%
CAGGCTTACGAGTTGTAGGA+TGG + chr1_1:77722605-77722624 Msa0045760:intron 50.0%
AATGGGGAAGACAAGGCTCA+TGG + chr1_1:77722666-77722685 Msa0045760:intron 50.0%
CGTGTCCCATTTCCTCTTTG+AGG - chr1_1:77723239-77723258 None:intergenic 50.0%
AAAGAGGAAATGGGACACGC+TGG + chr1_1:77723240-77723259 Msa0045760:three_prime_UTR 50.0%
AAGAGGAAATGGGACACGCT+GGG + chr1_1:77723241-77723260 Msa0045760:three_prime_UTR 50.0%
! GCATCAACAGCCGTGTTGTT+GGG + chr1_1:77723270-77723289 Msa0045760:three_prime_UTR 50.0%
AATTCGGTCGCCCAACAACA+CGG - chr1_1:77723283-77723302 None:intergenic 50.0%
! GTTGCATCGAGAGCTGGTTT+AGG + chr1_1:77723333-77723352 Msa0045760:three_prime_UTR 50.0%
CGTCAAAGGATTGAACAGGC+TGG + chr1_1:77723642-77723661 Msa0045760:three_prime_UTR 50.0%
CAAAGGATTGAACAGGCTGG+GGG + chr1_1:77723645-77723664 Msa0045760:three_prime_UTR 50.0%
AAAGGATTGAACAGGCTGGG+GGG + chr1_1:77723646-77723665 Msa0045760:three_prime_UTR 50.0%
!! CTTGCTGTTTCCCGTGCATT+TGG + chr1_1:77723797-77723816 Msa0045760:three_prime_UTR 50.0%
GCTGACCCAGAAATTCAGGT+TGG + chr1_1:77723848-77723867 Msa0045760:intron 50.0%
GGGTCTGACTCCCTATTTGT+TGG - chr1_1:77724072-77724091 None:intergenic 50.0%
!! ATACTCCGGCAACTTGGTGT+TGG + chr1_1:77724372-77724391 Msa0045760:intron 50.0%
!! TTTTCAGGAGGCGGTGTCTT+TGG + chr1_1:77724459-77724478 Msa0045760:intron 50.0%
GATGTTGTCTGAGCTTCCTC+GGG - chr1_1:77724542-77724561 None:intergenic 50.0%
CCAGAAGTCGCATTAGGATG+TGG - chr1_1:77724589-77724608 None:intergenic 50.0%
CCACATCCTAATGCGACTTC+TGG + chr1_1:77724586-77724605 Msa0045760:three_prime_UTR 50.0%
CAGTTGCCAGAAGTCGCATT+AGG - chr1_1:77724595-77724614 None:intergenic 50.0%
GGTGGCATGTTTGACGGAGT+CGG - chr1_1:77720419-77720438 None:intergenic 55.0%
CTCCGTCAAACATGCCACCA+CGG + chr1_1:77720420-77720439 Msa0045760:CDS 55.0%
!! ATTGGAGCTGATGGCGGTGA+GGG - chr1_1:77720490-77720509 None:intergenic 55.0%
!! AATTGGAGCTGATGGCGGTG+AGG - chr1_1:77720491-77720510 None:intergenic 55.0%
GATTCTCTCTTCAGTGGCGG+TGG + chr1_1:77720535-77720554 Msa0045760:intron 55.0%
TACTCGAGTCATGTGCGGTC+TGG + chr1_1:77721427-77721446 Msa0045760:intron 55.0%
CGTGTGTCTGTGTGTGTGTG+TGG + chr1_1:77721497-77721516 Msa0045760:intron 55.0%
TTGCTACGCCCTCCTGATCT+TGG + chr1_1:77721652-77721671 Msa0045760:intron 55.0%
!! CGCGGCTCTGAGAATCCTTA+AGG - chr1_1:77721843-77721862 None:intergenic 55.0%
GTTTGCAGTGCTGCACCCAT+TGG + chr1_1:77721875-77721894 Msa0045760:intron 55.0%
GCAGCAGGCTTACGAGTTGT+AGG + chr1_1:77722601-77722620 Msa0045760:intron 55.0%
!! GTGTGGTTTGGTCTGCTACC+TGG + chr1_1:77723132-77723151 Msa0045760:intron 55.0%
GGCATCAACAGCCGTGTTGT+TGG + chr1_1:77723269-77723288 Msa0045760:three_prime_UTR 55.0%
CGAGTAGTTGCATCGAGAGC+TGG + chr1_1:77723327-77723346 Msa0045760:three_prime_UTR 55.0%
AGGCTGGGGGGTTCGTAATA+TGG + chr1_1:77723658-77723677 Msa0045760:three_prime_UTR 55.0%
GGCTGGGGGGTTCGTAATAT+GGG + chr1_1:77723659-77723678 Msa0045760:three_prime_UTR 55.0%
ACAGGAACATGGAGGGTTGG+CGG + chr1_1:77723770-77723789 Msa0045760:intron 55.0%
GGAGGAAGAAGTTGAAGGCG+TGG + chr1_1:77723974-77723993 Msa0045760:intron 55.0%
GGCCGTGGTGGCATGTTTGA+CGG - chr1_1:77720425-77720444 None:intergenic 60.0%
AAACATGCCACCACGGCCGT+CGG + chr1_1:77720427-77720446 Msa0045760:CDS 60.0%
! TTTTTCTCCGACGGCCGTGG+TGG - chr1_1:77720437-77720456 None:intergenic 60.0%
!!! GGTTTTTTCTCCGACGGCCG+TGG - chr1_1:77720440-77720459 None:intergenic 60.0%
TCTTCAGTGGCGGTGGCATC+AGG + chr1_1:77720542-77720561 Msa0045760:intron 60.0%
CTGCAGTTCGCGAACCTCCA+TGG - chr1_1:77722975-77722994 None:intergenic 60.0%
AATGGGACACGCTGGGTCCA+CGG + chr1_1:77723248-77723267 Msa0045760:three_prime_UTR 60.0%
CAACACGGCTGTTGATGCCG+TGG - chr1_1:77723268-77723287 None:intergenic 60.0%
GGGGGGTTCGTAATATGGGC+AGG + chr1_1:77723663-77723682 Msa0045760:three_prime_UTR 60.0%
GACGCGCGTGTGTCTGTGTG+TGG + chr1_1:77721522-77721541 Msa0045760:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 77720313 77724863 77720313 ID=Msa0045760;Name=Msa0045760
chr1_1 mRNA 77720313 77724863 77720313 ID=Msa0045760-mRNA-1;Parent=Msa0045760;Name=Msa0045760-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.85|0.87|1|0.85|0.87|8|987|84
chr1_1 exon 77720313 77720513 77720313 ID=Msa0045760-mRNA-1:exon:26606;Parent=Msa0045760-mRNA-1
chr1_1 exon 77722065 77722207 77722065 ID=Msa0045760-mRNA-1:exon:26607;Parent=Msa0045760-mRNA-1
chr1_1 exon 77722971 77723069 77722971 ID=Msa0045760-mRNA-1:exon:26608;Parent=Msa0045760-mRNA-1
chr1_1 exon 77723205 77723354 77723205 ID=Msa0045760-mRNA-1:exon:26609;Parent=Msa0045760-mRNA-1
chr1_1 exon 77723598 77723684 77723598 ID=Msa0045760-mRNA-1:exon:26610;Parent=Msa0045760-mRNA-1
chr1_1 exon 77723774 77723865 77723774 ID=Msa0045760-mRNA-1:exon:26611;Parent=Msa0045760-mRNA-1
chr1_1 exon 77723975 77724046 77723975 ID=Msa0045760-mRNA-1:exon:26612;Parent=Msa0045760-mRNA-1
chr1_1 exon 77724466 77724863 77724466 ID=Msa0045760-mRNA-1:exon:26613;Parent=Msa0045760-mRNA-1
chr1_1 CDS 77720313 77720513 77720313 ID=Msa0045760-mRNA-1:cds;Parent=Msa0045760-mRNA-1
chr1_1 CDS 77722065 77722118 77722065 ID=Msa0045760-mRNA-1:cds;Parent=Msa0045760-mRNA-1
chr1_1 three_prime_UTR 77722119 77722207 77722119 ID=Msa0045760-mRNA-1:three_prime_utr;Parent=Msa0045760-mRNA-1
chr1_1 three_prime_UTR 77722971 77723069 77722971 ID=Msa0045760-mRNA-1:three_prime_utr;Parent=Msa0045760-mRNA-1
chr1_1 three_prime_UTR 77723205 77723354 77723205 ID=Msa0045760-mRNA-1:three_prime_utr;Parent=Msa0045760-mRNA-1
chr1_1 three_prime_UTR 77723598 77723684 77723598 ID=Msa0045760-mRNA-1:three_prime_utr;Parent=Msa0045760-mRNA-1
chr1_1 three_prime_UTR 77723774 77723865 77723774 ID=Msa0045760-mRNA-1:three_prime_utr;Parent=Msa0045760-mRNA-1
chr1_1 three_prime_UTR 77723975 77724046 77723975 ID=Msa0045760-mRNA-1:three_prime_utr;Parent=Msa0045760-mRNA-1
chr1_1 three_prime_UTR 77724466 77724863 77724466 ID=Msa0045760-mRNA-1:three_prime_utr;Parent=Msa0045760-mRNA-1
Gene Sequence

>Msa0045760

ATGAGATACAATTGGACCAAATCAAGAGTTCATACTGAAGTCGTTTGTCTTTTGAGTACTTTTCTCGTCCATCGTGGATATGATGTTATAATGATCTCAGACACCGACTCCGTCAAACATGCCACCACGGCCGTCGGAGAAAAAACCTCCTCCGCATATTCCGATAAAGATCAACCCTCACCGCCATCAGCTCCAATTATTCTTACTATCTGGAAGTCGGAATGGAAGGATCAGCTATGGATATTCCAGTTTTAA
Protein sequence

>Msa0045760

MRYNWTKSRVHTEVVCLLSTFLVHRGYDVIMISDTDSVKHATTAVGEKTSSAYSDKDQPSPPSAPIILTIWKSEWKDQLWIFQF*