AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0880980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880980 MtrunA17_Chr1g0212961 89.125 377 11 1 1 377 1 347 0.0 675
Msa0880980 MtrunA17_Chr3g0136711 59.596 297 81 4 75 367 19 280 1.87e-121 353
Msa0880980 MtrunA17_Chr1g0150451 51.213 371 128 8 1 367 2 323 9.88e-121 352
Msa0880980 MtrunA17_Chr3g0126511 46.649 373 142 7 3 368 19 341 3.33e-104 311
Msa0880980 MtrunA17_Chr8g0360351 38.851 296 138 8 79 367 22 281 3.16e-59 193
Msa0880980 MtrunA17_Chr2g0279151 37.075 294 141 8 86 367 19 280 4.19e-58 190
Msa0880980 MtrunA17_Chr4g0050381 40.214 281 129 7 94 367 28 276 9.14e-58 189
Msa0880980 MtrunA17_Chr3g0115851 37.809 283 137 7 92 367 31 281 3.15e-56 185
Msa0880980 MtrunA17_Chr5g0426141 39.223 283 133 7 92 367 31 281 1.84e-55 183
Msa0880980 MtrunA17_Chr2g0317021 37.162 296 143 8 79 367 73 332 7.64e-55 183
Msa0880980 MtrunA17_Chr4g0051661 35.587 281 143 7 93 367 149 397 2.09e-47 166
Msa0880980 MtrunA17_Chr5g0430481 35.439 285 137 8 97 367 123 374 2.91e-47 165
Msa0880980 MtrunA17_Chr3g0105371 34.276 283 143 7 97 367 87 338 1.55e-46 162
Msa0880980 MtrunA17_Chr3g0105351 33.569 283 145 7 97 367 63 314 2.81e-45 158
Msa0880980 MtrunA17_Chr3g0112291 34.615 312 157 8 96 377 93 387 4.25e-39 143
Msa0880980 MtrunA17_Chr2g0299981 32.174 345 131 9 96 367 221 535 2.18e-38 144
Msa0880980 MtrunA17_Chr4g0070871 31.662 379 160 14 47 365 162 501 3.17e-38 143
Msa0880980 MtrunA17_Chr5g0407161 34.564 298 139 10 97 371 87 351 1.49e-37 139
Msa0880980 MtrunA17_Chr5g0435721 35.659 258 118 5 96 335 193 420 3.48e-37 140
Msa0880980 MtrunA17_Chr1g0171571 33.562 292 147 7 94 369 386 646 9.16e-37 140
Msa0880980 MtrunA17_Chr8g0389921 29.444 360 167 10 51 365 115 432 2.29e-36 137
Msa0880980 MtrunA17_Chr1g0150781 31.579 342 132 10 96 370 240 546 2.91e-36 138
Msa0880980 MtrunA17_Chr3g0135961 33.121 314 159 8 96 365 231 537 2.31e-35 136
Msa0880980 MtrunA17_Chr4g0065141 35.526 228 126 5 162 371 130 354 3.56e-34 130
Msa0880980 MtrunA17_Chr5g0396731 31.935 310 145 12 95 368 72 351 2.20e-33 127
Msa0880980 MtrunA17_Chr3g0144111 40.625 192 98 7 193 371 43 231 1.40e-32 122
Msa0880980 MtrunA17_Chr1g0158781 35.762 302 129 10 94 365 111 377 2.55e-32 125
Msa0880980 MtrunA17_Chr2g0293811 35.683 227 120 7 162 365 106 329 4.15e-32 124
Msa0880980 MtrunA17_Chr1g0194191 34.361 227 123 7 162 365 124 347 1.50e-31 123
Msa0880980 MtrunA17_Chr3g0138281 35.398 226 127 6 162 371 127 349 5.56e-31 121
Msa0880980 MtrunA17_Chr6g0483411 36.017 236 119 9 162 367 85 318 4.32e-29 115
Msa0880980 MtrunA17_Chr3g0136811 31.975 319 167 14 91 367 19 329 9.77e-27 109
Msa0880980 MtrunA17_Chr4g0001761 31.562 320 166 14 91 367 19 328 3.96e-26 107
Msa0880980 MtrunA17_Chr1g0150071 30.031 323 168 12 91 367 19 329 1.30e-24 103
Msa0880980 MtrunA17_Chr7g0272061 29.393 313 176 12 71 351 39 338 2.55e-23 100
Msa0880980 MtrunA17_Chr4g0067711 31.802 283 153 13 122 373 87 360 4.03e-23 99.4
Msa0880980 MtrunA17_Chr1g0209451 33.906 233 128 12 162 372 74 302 3.02e-22 97.4
Msa0880980 MtrunA17_Chr3g0127091 26.543 324 149 10 94 364 59 346 4.73e-22 96.7
Msa0880980 MtrunA17_Chr1g0207571 28.975 283 130 9 162 376 67 346 5.99e-22 96.3
Msa0880980 MtrunA17_Chr7g0263281 27.839 273 128 8 162 368 77 346 2.43e-21 94.4
Msa0880980 MtrunA17_Chr2g0295401 32.701 211 111 9 191 372 150 358 2.87e-21 94.0
Msa0880980 MtrunA17_Chr8g0371321 30.508 236 114 8 162 351 85 316 1.11e-20 92.8
Msa0880980 MtrunA17_Chr1g0213351 28.014 282 131 10 162 375 86 363 1.34e-20 92.4
Msa0880980 MtrunA17_Chr1g0192421 38.854 157 77 6 213 351 172 327 1.42e-20 91.7
Msa0880980 MtrunA17_Chr1g0211251 29.565 230 113 7 162 345 87 313 1.58e-20 92.4
Msa0880980 MtrunA17_Chr1g0153671 34.498 229 128 10 162 370 71 297 6.47e-20 90.9
Msa0880980 MtrunA17_Chr6g0486661 28.136 295 134 12 126 372 124 388 4.66e-19 89.4
Msa0880980 MtrunA17_Chr7g0271971 32.189 233 132 10 162 371 74 303 4.96e-19 88.2
Msa0880980 MtrunA17_Chr7g0225501 33.188 229 125 11 162 365 92 317 7.41e-19 87.8
Msa0880980 MtrunA17_Chr3g0133801 30.242 248 143 11 150 370 54 298 8.82e-19 87.4
Msa0880980 MtrunA17_Chr7g0243571 30.918 207 113 8 193 371 164 368 2.29e-18 86.3
Msa0880980 MtrunA17_Chr3g0089711 29.741 232 114 8 162 347 74 302 2.61e-18 85.5
Msa0880980 MtrunA17_Chr7g0256751 28.571 245 130 10 162 362 75 318 3.77e-18 85.5
Msa0880980 MtrunA17_Chr4g0022171 33.161 193 106 7 181 351 156 347 4.10e-18 85.5
Msa0880980 MtrunA17_Chr1g0192471 30.568 229 135 9 162 369 74 299 4.79e-18 85.1
Msa0880980 MtrunA17_Chr4g0068971 39.370 127 63 4 254 369 110 233 7.13e-18 82.8
Msa0880980 MtrunA17_Chr3g0089721 29.310 232 115 7 162 347 74 302 1.03e-17 83.6
Msa0880980 MtrunA17_Chr7g0250061 28.390 236 119 8 162 351 82 313 1.04e-17 84.0
Msa0880980 MtrunA17_Chr1g0181901 28.899 218 112 7 162 336 82 299 1.19e-17 84.0
Msa0880980 MtrunA17_Chr1g0151781 35.366 164 85 6 191 334 126 288 3.12e-17 82.0
Msa0880980 MtrunA17_Chr7g0221691 30.769 260 143 11 126 351 129 385 3.96e-17 82.4
Msa0880980 MtrunA17_Chr2g0324061 35.503 169 79 7 191 334 160 323 1.17e-16 81.3
Msa0880980 MtrunA17_Chr1g0187481 25.359 209 133 5 165 368 88 278 1.49e-16 79.0
Msa0880980 MtrunA17_Chr4g0004971 32.484 157 87 6 213 351 165 320 1.78e-16 80.1
Msa0880980 MtrunA17_Chr7g0249421 30.769 208 117 7 184 365 174 380 4.72e-16 79.3
Msa0880980 MtrunA17_Chr2g0294291 27.615 239 128 8 162 356 81 318 5.47e-16 78.6
Msa0880980 MtrunA17_Chr7g0256771 30.357 224 105 10 162 338 76 295 2.39e-15 76.3
Msa0880980 MtrunA17_Chr1g0166481 26.442 208 128 6 165 368 88 274 1.40e-14 73.2
Msa0880980 MtrunA17_Chr8g0342431 30.682 176 101 6 194 351 177 349 2.04e-13 71.2
Msa0880980 MtrunA17_Chr4g0063111 26.033 242 132 11 162 361 80 316 6.83e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880980 AT1G43900.1 63.279 305 79 2 67 368 95 369 9.19e-139 400
Msa0880980 AT4G31750.2 57.912 297 86 4 75 367 18 279 5.13e-117 342
Msa0880980 AT4G31750.1 57.912 297 86 4 75 367 18 279 8.17e-117 342
Msa0880980 AT4G31750.3 57.912 297 86 4 75 367 18 279 8.17e-117 342
Msa0880980 AT5G24940.1 58.362 293 83 4 79 367 22 279 4.52e-116 345
Msa0880980 AT5G10740.1 54.375 320 95 5 52 367 7 279 4.14e-115 339
Msa0880980 AT5G10740.2 54.375 320 95 5 52 367 7 279 4.14e-115 339
Msa0880980 AT5G53140.1 50.993 302 110 4 70 367 80 347 1.61e-101 307
Msa0880980 AT5G53140.2 50.993 302 110 4 70 367 80 347 1.61e-101 307
Msa0880980 AT2G20630.1 40.741 297 129 8 86 367 14 278 6.41e-63 203
Msa0880980 AT2G20630.2 40.067 297 131 8 86 367 14 278 2.12e-60 197
Msa0880980 AT4G28400.3 39.146 281 132 7 94 367 12 260 9.62e-60 194
Msa0880980 AT4G28400.1 39.146 281 132 7 94 367 34 282 1.41e-59 194
Msa0880980 AT1G78200.1 38.889 288 136 7 90 367 25 282 7.27e-58 190
Msa0880980 AT1G78200.3 38.889 288 136 7 90 367 25 282 7.27e-58 190
Msa0880980 AT1G78200.2 38.889 288 136 7 90 367 25 282 7.27e-58 190
Msa0880980 AT1G34750.2 36.538 312 158 8 64 367 2 281 2.34e-57 189
Msa0880980 AT1G34750.1 36.538 312 158 8 64 367 2 281 2.34e-57 189
Msa0880980 AT1G34750.3 36.538 312 158 8 64 367 2 281 2.34e-57 189
Msa0880980 AT3G15260.2 39.007 282 133 7 93 367 39 288 4.51e-54 180
Msa0880980 AT3G15260.1 39.007 282 133 7 93 367 39 288 4.51e-54 180
Msa0880980 AT1G78200.5 37.828 267 129 5 108 367 1 237 2.81e-53 177
Msa0880980 AT1G78200.4 37.828 267 129 5 108 367 1 237 2.81e-53 177
Msa0880980 AT1G22280.1 37.102 283 139 7 92 367 30 280 4.61e-51 172
Msa0880980 AT1G22280.3 36.332 289 139 8 92 367 30 286 1.64e-48 166
Msa0880980 AT2G34740.1 37.993 279 134 8 96 367 88 334 7.81e-48 166
Msa0880980 AT2G30020.1 35.689 283 137 7 97 365 139 390 1.78e-43 155
Msa0880980 AT1G34750.4 36.059 269 132 8 64 324 2 238 2.58e-43 151
Msa0880980 AT4G28400.2 38.235 238 108 7 94 324 34 239 7.96e-43 150
Msa0880980 AT1G67820.2 38.095 273 122 8 90 351 74 310 2.20e-42 153
Msa0880980 AT2G29380.1 37.374 297 143 8 96 365 78 358 2.43e-42 152
Msa0880980 AT1G67820.1 38.095 273 122 8 90 351 110 346 4.88e-42 153
Msa0880980 AT1G07160.1 34.021 291 136 9 97 367 122 376 2.42e-41 149
Msa0880980 AT4G26080.1 33.537 328 134 10 96 370 129 425 5.27e-41 150
Msa0880980 AT2G40180.1 32.881 295 137 8 96 367 129 385 4.42e-40 146
Msa0880980 AT2G33700.1 38.117 223 122 7 162 371 129 348 2.96e-39 144
Msa0880980 AT3G51470.2 36.552 290 135 9 97 370 30 286 4.28e-39 142
Msa0880980 AT3G51470.1 36.552 290 135 9 97 370 74 330 7.28e-39 142
Msa0880980 AT5G59220.1 34.733 262 119 4 96 335 112 343 7.06e-38 141
Msa0880980 AT5G57050.2 34.545 330 123 13 96 365 73 369 2.05e-37 139
Msa0880980 AT1G07430.1 35.600 250 142 6 93 335 118 355 2.36e-37 140
Msa0880980 AT5G57050.1 34.545 330 123 13 96 365 113 409 2.45e-37 140
Msa0880980 AT3G11410.1 35.510 245 145 7 97 335 106 343 9.71e-36 135
Msa0880980 AT5G51760.2 44.565 184 75 2 209 365 196 379 1.20e-35 134
Msa0880980 AT3G62260.3 36.522 230 119 7 162 367 33 259 1.52e-35 132
Msa0880980 AT5G51760.1 44.565 184 75 2 209 365 226 409 1.96e-35 134
Msa0880980 AT2G25620.1 35.652 230 125 5 162 371 134 360 4.02e-35 133
Msa0880980 AT2G25620.2 35.652 230 125 5 162 371 134 360 4.02e-35 133
Msa0880980 AT3G62260.1 36.522 230 119 7 162 367 122 348 7.01e-35 132
Msa0880980 AT3G62260.2 36.522 230 119 7 162 367 123 349 7.83e-35 132
Msa0880980 AT2G40860.1 32.881 295 144 8 94 369 391 650 8.73e-35 135
Msa0880980 AT2G34740.3 36.667 240 113 8 96 328 84 291 9.31e-35 130
Msa0880980 AT2G34740.2 36.667 240 113 8 96 328 102 309 9.93e-35 130
Msa0880980 AT2G40860.4 32.881 295 144 8 94 369 293 552 1.37e-34 134
Msa0880980 AT1G48040.1 36.709 237 122 8 162 373 122 355 5.55e-32 124
Msa0880980 AT1G72770.4 28.497 386 158 12 57 365 155 499 4.07e-31 124
Msa0880980 AT1G72770.1 28.497 386 158 12 57 365 155 499 4.07e-31 124
Msa0880980 AT1G72770.3 28.497 386 158 12 57 365 155 499 4.07e-31 124
Msa0880980 AT1G17550.1 29.885 348 129 11 96 365 189 499 4.81e-31 124
Msa0880980 AT1G17550.2 29.885 348 129 11 96 365 189 499 4.81e-31 124
Msa0880980 AT3G17250.1 34.177 237 126 8 162 371 164 397 6.59e-31 122
Msa0880980 AT2G40860.2 31.429 280 138 8 94 354 391 635 6.69e-29 118
Msa0880980 AT2G25070.1 30.488 328 177 15 90 374 18 337 3.35e-27 110
Msa0880980 AT2G25070.2 30.488 328 177 15 90 374 18 337 3.35e-27 110
Msa0880980 AT1G18030.1 34.322 236 123 9 162 367 115 348 1.08e-26 109
Msa0880980 AT4G31860.1 30.793 328 176 15 90 374 18 337 2.19e-25 105
Msa0880980 AT3G16800.4 34.783 207 107 7 191 369 49 255 3.07e-25 103
Msa0880980 AT3G16800.6 34.783 207 107 7 191 369 49 255 3.07e-25 103
Msa0880980 AT3G16800.2 34.783 207 107 7 191 369 144 350 1.36e-24 103
Msa0880980 AT3G16800.1 34.783 207 107 7 191 369 144 350 1.36e-24 103
Msa0880980 AT3G16800.3 34.783 207 107 7 191 369 144 350 1.36e-24 103
Msa0880980 AT5G02760.1 29.856 278 128 9 162 375 78 352 1.43e-24 103
Msa0880980 AT4G27800.1 28.086 324 144 10 94 364 58 345 1.05e-23 101
Msa0880980 AT5G27930.1 32.114 246 116 11 152 351 91 331 1.12e-22 98.6
Msa0880980 AT5G27930.2 32.114 246 116 11 152 351 91 331 1.12e-22 98.6
Msa0880980 AT4G31860.3 31.655 278 149 13 91 335 19 288 1.54e-22 96.7
Msa0880980 AT4G08260.1 32.701 211 106 6 162 365 25 206 1.98e-22 94.7
Msa0880980 AT1G09160.2 31.878 229 132 10 162 369 74 299 2.85e-22 98.2
Msa0880980 AT1G09160.1 31.878 229 132 10 162 369 74 299 2.85e-22 98.2
Msa0880980 AT3G05640.2 37.569 181 87 7 212 367 170 349 8.95e-22 95.9
Msa0880980 AT3G05640.1 37.569 181 87 7 212 367 170 349 8.95e-22 95.9
Msa0880980 AT3G05640.3 37.569 181 87 7 212 367 170 349 8.95e-22 95.9
Msa0880980 AT1G68410.4 32.035 231 135 9 162 372 79 307 9.67e-22 96.7
Msa0880980 AT1G68410.3 32.035 231 135 9 162 372 79 307 9.67e-22 96.7
Msa0880980 AT1G68410.1 32.035 231 135 9 162 372 79 307 9.67e-22 96.7
Msa0880980 AT1G68410.2 32.035 231 135 9 162 372 79 307 9.67e-22 96.7
Msa0880980 AT3G51370.1 29.461 241 120 8 162 356 85 321 1.84e-21 95.1
Msa0880980 AT3G51370.3 29.461 241 120 8 162 356 85 321 1.84e-21 95.1
Msa0880980 AT5G57050.3 34.783 230 84 11 96 292 113 309 3.67e-21 93.2
Msa0880980 AT1G22280.2 32.787 183 87 5 92 270 30 180 6.12e-21 90.1
Msa0880980 AT4G27800.3 28.425 292 124 9 94 336 58 313 8.00e-21 92.4
Msa0880980 AT4G27800.2 28.425 292 124 9 94 336 58 313 9.89e-21 92.4
Msa0880980 AT1G18030.2 34.574 188 96 7 162 324 115 300 1.33e-20 91.7
Msa0880980 AT4G32950.1 34.513 226 120 10 153 353 72 294 5.17e-20 90.1
Msa0880980 AT3G63340.12 31.224 237 101 8 191 365 207 443 6.70e-20 91.7
Msa0880980 AT4G31860.2 32.453 265 138 13 91 322 19 275 7.78e-20 89.0
Msa0880980 AT5G59220.2 30.698 215 98 3 96 289 112 296 7.92e-20 89.4
Msa0880980 AT3G63340.11 31.224 237 101 8 191 365 207 443 1.21e-19 91.3
Msa0880980 AT3G63340.6 31.224 237 101 8 191 365 207 443 1.26e-19 91.3
Msa0880980 AT3G63340.3 31.224 237 101 8 191 365 207 443 1.26e-19 91.3
Msa0880980 AT3G63340.10 31.224 237 101 8 191 365 207 443 1.26e-19 91.3
Msa0880980 AT3G63340.4 31.224 237 101 8 191 365 207 443 1.26e-19 91.3
Msa0880980 AT3G63340.8 31.224 237 101 8 191 365 207 443 1.40e-19 91.3
Msa0880980 AT1G79630.2 33.645 214 105 9 184 365 119 327 1.41e-19 90.1
Msa0880980 AT1G79630.7 33.645 214 105 9 184 365 119 327 1.41e-19 90.1
Msa0880980 AT3G63340.7 31.224 237 101 8 191 365 207 443 1.53e-19 91.3
Msa0880980 AT3G63340.5 31.224 237 101 8 191 365 207 443 1.59e-19 91.3
Msa0880980 AT3G63340.1 31.224 237 101 8 191 365 207 443 1.59e-19 91.3
Msa0880980 AT1G47380.1 32.895 228 131 10 162 369 70 295 1.84e-19 89.7
Msa0880980 AT1G79630.6 33.645 214 105 9 184 365 79 287 2.05e-19 89.4
Msa0880980 AT1G79630.3 33.645 214 105 9 184 365 79 287 2.05e-19 89.4
Msa0880980 AT1G79630.4 33.645 214 105 9 184 365 79 287 2.05e-19 89.4
Msa0880980 AT1G79630.5 33.645 214 105 9 184 365 79 287 2.05e-19 89.4
Msa0880980 AT2G40860.3 30.000 240 116 6 94 316 391 595 2.61e-19 90.1
Msa0880980 AT1G79630.1 33.645 214 105 9 184 365 189 397 3.42e-19 89.4
Msa0880980 AT1G79630.8 33.645 214 105 9 184 365 185 393 3.61e-19 89.4
Msa0880980 AT4G38520.2 28.102 274 126 9 162 368 87 356 8.99e-19 87.4
Msa0880980 AT4G38520.1 28.102 274 126 9 162 368 87 356 8.99e-19 87.4
Msa0880980 AT3G17090.1 31.760 233 115 8 162 351 90 321 1.83e-18 86.7
Msa0880980 AT5G01700.1 29.965 287 149 13 126 377 29 298 2.52e-18 85.5
Msa0880980 AT1G16220.1 28.986 345 177 17 77 365 40 372 3.24e-18 86.3
Msa0880980 AT3G12620.2 27.899 276 128 9 162 370 89 360 4.27e-18 85.5
Msa0880980 AT3G12620.1 27.899 276 128 9 162 370 89 360 4.27e-18 85.5
Msa0880980 AT5G01700.2 29.965 287 149 13 126 377 78 347 7.14e-18 84.7
Msa0880980 AT3G51370.2 30.244 205 100 6 194 356 33 236 8.95e-18 83.2
Msa0880980 AT5G06750.3 28.512 242 118 8 162 353 88 324 1.65e-17 83.6
Msa0880980 AT5G06750.1 28.512 242 118 8 162 353 88 324 1.65e-17 83.6
Msa0880980 AT1G72770.2 28.622 283 116 9 57 289 155 401 1.68e-17 84.0
Msa0880980 AT1G72770.5 28.622 283 116 9 57 289 155 401 1.68e-17 84.0
Msa0880980 AT3G17090.2 30.631 222 111 7 162 340 90 311 1.95e-17 82.8
Msa0880980 AT5G66080.1 29.461 241 120 8 162 356 88 324 2.27e-17 83.2
Msa0880980 AT3G02750.2 30.493 223 118 8 178 368 177 394 5.60e-17 82.8
Msa0880980 AT3G02750.1 30.493 223 118 8 178 368 177 394 5.60e-17 82.8
Msa0880980 AT3G63340.2 39.130 138 68 5 244 365 339 476 9.67e-17 82.8
Msa0880980 AT4G33920.1 25.614 285 140 9 162 377 67 348 9.80e-17 81.3
Msa0880980 AT5G26010.1 37.143 140 69 5 213 334 145 283 1.35e-16 80.5
Msa0880980 AT1G03590.1 34.783 184 77 8 171 334 162 322 2.24e-16 80.9
Msa0880980 AT3G55050.1 28.571 238 126 7 162 356 90 326 4.76e-16 79.3
Msa0880980 AT3G55050.2 28.571 238 126 7 162 356 90 326 4.76e-16 79.3
Msa0880980 AT4G03415.1 30.000 250 118 9 141 334 84 332 2.48e-15 77.8
Msa0880980 AT4G03415.3 30.000 250 118 9 141 334 84 332 2.48e-15 77.8
Msa0880980 AT4G03415.2 30.000 250 118 9 141 334 84 332 2.48e-15 77.8
Msa0880980 AT5G36250.1 28.704 216 115 9 193 375 183 392 4.71e-15 76.6
Msa0880980 AT3G27140.1 29.302 215 96 5 162 369 25 190 2.58e-14 72.4
Msa0880980 AT5G66080.2 31.522 184 92 5 206 356 38 220 5.24e-14 72.0
Msa0880980 AT4G32950.2 33.505 194 102 9 153 321 72 263 3.85e-13 69.7
Msa0880980 AT5G36250.2 26.957 230 115 10 193 375 183 406 5.53e-12 67.4
Msa0880980 AT5G19280.2 28.629 248 130 11 162 368 347 588 6.60e-12 67.4

Find 108 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGAAGGCATCACAATAAT+TGG 0.203859 6_1:+27856741 None:intergenic
TCTTCTTGATTACTCCTATC+TGG 0.247650 6_1:-27852521 Msa0880980:three_prime_UTR
GATTACTCCTATCTGGAAAA+AGG 0.269762 6_1:-27852514 Msa0880980:three_prime_UTR
TAATTGCTAGTGATGGTCTT+TGG 0.271545 6_1:-27853234 Msa0880980:CDS
TGACGCTCATCAGACCTATT+AGG 0.289937 6_1:+27853616 None:intergenic
GCAAAAGAATTCTGTGTAAT+GGG 0.310779 6_1:-27854592 Msa0880980:CDS
CGGTGAGGGTTGATCTTTAT+CGG 0.325268 6_1:+27856773 None:intergenic
TTCAGTATGAACTCTTGATT+TGG 0.325450 6_1:+27856917 None:intergenic
AAGTAATTCATATGAAAATA+AGG 0.326323 6_1:+27852593 None:intergenic
CTTGCTGTTTCCCGTGCATT+TGG 0.327515 6_1:-27853443 Msa0880980:CDS
TACGAGTTGTAGGATGGTTT+TGG 0.337660 6_1:-27854630 Msa0880980:CDS
TGTTGCTGACCCAGAAATTC+AGG 0.355237 6_1:-27853396 Msa0880980:intron
GGTTTGTGATCAACAGATAA+AGG 0.365657 6_1:+27853637 None:intergenic
TCTTCAGTGGCGGTGGCATC+AGG 0.372651 6_1:-27856704 Msa0880980:intron
TGATTACCTCAAAGAGGAAA+TGG 0.378429 6_1:-27854010 Msa0880980:CDS
CAGTTGCCAGAAGTCGCATT+AGG 0.378672 6_1:+27852648 None:intergenic
CCTCTGAACAGATAAATTAC+AGG 0.379462 6_1:-27852414 Msa0880980:three_prime_UTR
CTGTTGATCACAAACCTAAT+AGG 0.382265 6_1:-27853630 Msa0880980:CDS
ACCATCAACCTCTGATACTT+TGG 0.384660 6_1:+27855087 None:intergenic
CCACATCCTAATGCGACTTC+TGG 0.385086 6_1:-27852654 Msa0880980:CDS
CGTGTCCCATTTCCTCTTTG+AGG 0.386355 6_1:+27854004 None:intergenic
CAACATTTGCAACAAGAATT+CGG 0.403403 6_1:+27853944 None:intergenic
TAAGGGTAAAAGATCTTCAA+TGG 0.412178 6_1:-27855125 Msa0880980:CDS
AATTGCTAGTGATGGTCTTT+GGG 0.419224 6_1:-27853233 Msa0880980:CDS
CTTAGTATCTGTGATAAAGT+TGG 0.420001 6_1:+27854203 None:intergenic
GGCATCAACAGCCGTGTTGT+TGG 0.422306 6_1:-27853971 Msa0880980:CDS
GTTGCATCGAGAGCTGGTTT+AGG 0.423804 6_1:-27853907 Msa0880980:intron
TTGTAGATATCATCTGCATT+TGG 0.425120 6_1:-27852485 Msa0880980:three_prime_UTR
GCATCAACAGCCGTGTTGTT+GGG 0.428778 6_1:-27853970 Msa0880980:CDS
AAATAGCTGGATCCGAGATA+TGG 0.431381 6_1:+27852445 None:intergenic
TTAGTATCTGTGATAAAGTT+GGG 0.434168 6_1:+27854204 None:intergenic
CTTGCGAGATGAGATACAAT+TGG 0.438168 6_1:-27856941 None:intergenic
AGCAAAAGAATTCTGTGTAA+TGG 0.440851 6_1:-27854593 Msa0880980:CDS
TCTGGGTCAGCAACAACATA+TGG 0.444817 6_1:+27853404 None:intergenic
TTTAGCCAACCTGAATTTCT+GGG 0.448034 6_1:+27853387 None:intergenic
TGGAATTATTAGGCAGCAGC+AGG 0.456587 6_1:-27854655 Msa0880980:intron
AGAGAATCGTGATCTTTAGA+AGG 0.458310 6_1:+27856726 None:intergenic
GGCCGTGGTGGCATGTTTGA+CGG 0.459320 6_1:+27856824 None:intergenic
CGAGTAGTTGCATCGAGAGC+TGG 0.468100 6_1:-27853913 Msa0880980:CDS
TGAGCGTCAAAGGATTGAAC+AGG 0.479549 6_1:-27853602 Msa0880980:CDS
CGAATTCTTGTTGCAAATGT+TGG 0.482689 6_1:-27853943 Msa0880980:CDS
TGATGTTGTCTGAGCTTCCT+CGG 0.485200 6_1:+27852700 None:intergenic
GCAGCAGGCTTACGAGTTGT+AGG 0.486609 6_1:-27854640 Msa0880980:CDS
GTCAAAGGATTGAACAGGCT+GGG 0.498918 6_1:-27853597 Msa0880980:CDS
CGTCAAAGGATTGAACAGGC+TGG 0.505334 6_1:-27853598 Msa0880980:CDS
TTTATAATAATTGCTAGTGA+TGG 0.513673 6_1:-27853241 Msa0880980:CDS
CACATGAAGGCTCCATATCT+CGG 0.516872 6_1:-27852457 Msa0880980:three_prime_UTR
GCTTAGGAGGAAGAAGTTGA+AGG 0.518042 6_1:-27853271 Msa0880980:intron
CCAGAAGTCGCATTAGGATG+TGG 0.520632 6_1:+27852654 None:intergenic
GATGTTGTCTGAGCTTCCTC+GGG 0.522318 6_1:+27852701 None:intergenic
CTGCAGTTCGCGAACCTCCA+TGG 0.527402 6_1:+27854268 None:intergenic
AGAGGATCACAATAAATAGC+TGG 0.529113 6_1:+27852432 None:intergenic
GAGGTTGATGGTCAGATGGT+TGG 0.531607 6_1:-27855076 Msa0880980:CDS
TTTATCGGAATATGCGGAGG+AGG 0.532838 6_1:+27856788 None:intergenic
TTCTTTAATAAGTTCTCTAG+AGG 0.533836 6_1:+27852731 None:intergenic
TATACAGGAACATGGAGGGT+TGG 0.534500 6_1:-27853473 Msa0880980:intron
GATTCTCTCTTCAGTGGCGG+TGG 0.537572 6_1:-27856711 Msa0880980:CDS
AAATTTCTCTGATGCAGAAG+TGG 0.538449 6_1:-27852754 Msa0880980:CDS
GATTACCTCAAAGAGGAAAT+GGG 0.540033 6_1:-27854009 Msa0880980:CDS
ATCACAATAATTGGAGCTGA+TGG 0.540170 6_1:+27856750 None:intergenic
ACAGGAACATGGAGGGTTGG+CGG 0.545577 6_1:-27853470 Msa0880980:intron
AATGGGACACGCTGGGTCCA+CGG 0.547623 6_1:-27853992 Msa0880980:CDS
TTAGCTTACTATCTGGAAGT+CGG 0.551096 6_1:-27855180 Msa0880980:intron
CTTTGAGACCAAAGTATCAG+AGG 0.553206 6_1:-27855095 Msa0880980:CDS
CGGAATGGAAGGATCAGCTA+TGG 0.556545 6_1:-27855160 Msa0880980:CDS
CAGGCTTACGAGTTGTAGGA+TGG 0.557498 6_1:-27854636 Msa0880980:CDS
TATCTGGAAGTCGGAATGGA+AGG 0.559940 6_1:-27855171 Msa0880980:CDS
TCAAAGGATTGAACAGGCTG+GGG 0.561209 6_1:-27853596 Msa0880980:CDS
ATAGGTCTGATGAGCGTCAA+AGG 0.565284 6_1:-27853612 Msa0880980:CDS
AAGAGGAAATGGGACACGCT+GGG 0.567223 6_1:-27853999 Msa0880980:CDS
GGTGGCATGTTTGACGGAGT+CGG 0.571313 6_1:+27856830 None:intergenic
ATCAGAGGTTGATGGTCAGA+TGG 0.573226 6_1:-27855080 Msa0880980:CDS
CCTGTAATTTATCTGTTCAG+AGG 0.574233 6_1:+27852414 None:intergenic
ACAGATACTAAGACAGCCAT+TGG 0.574333 6_1:-27854192 Msa0880980:intron
CAACACGGCTGTTGATGCCG+TGG 0.574866 6_1:+27853975 None:intergenic
AAAGAGGAAATGGGACACGC+TGG 0.577155 6_1:-27854000 Msa0880980:CDS
AAGCTTGTCTCCAAATGCAC+GGG 0.577852 6_1:+27853433 None:intergenic
TTACTATCTGGAAGTCGGAA+TGG 0.578506 6_1:-27855175 Msa0880980:CDS
CACGATTCTCTCTTCAGTGG+CGG 0.582668 6_1:-27856714 Msa0880980:CDS
GAAGCTTGTCTCCAAATGCA+CGG 0.588102 6_1:+27853432 None:intergenic
CAAAGGATTGAACAGGCTGG+GGG 0.588768 6_1:-27853595 Msa0880980:CDS
TGCTGGTTTATACAGGAACA+TGG 0.590214 6_1:-27853481 Msa0880980:intron
ACCAAAGTATCAGAGGTTGA+TGG 0.597378 6_1:-27855088 Msa0880980:CDS
GGAGGAAGAAGTTGAAGGCG+TGG 0.598676 6_1:-27853266 Msa0880980:CDS
AAACATGCCACCACGGCCGT+CGG 0.599926 6_1:-27856819 Msa0880980:CDS
ATCTTTATCGGAATATGCGG+AGG 0.604581 6_1:+27856785 None:intergenic
GGTTTATACAGGAACATGGA+GGG 0.611021 6_1:-27853477 Msa0880980:intron
AGACGTTGATTACCTCAAAG+AGG 0.613566 6_1:-27854016 Msa0880980:CDS
ATTGGAGCTGATGGCGGTGA+GGG 0.618148 6_1:+27856759 None:intergenic
TAGTATCTGTGATAAAGTTG+GGG 0.629686 6_1:+27854205 None:intergenic
AAATAGAAATGACAAATGTG+TGG 0.630304 6_1:-27852625 Msa0880980:three_prime_UTR
AATTGGAGCTGATGGCGGTG+AGG 0.633682 6_1:+27856758 None:intergenic
ATTAAAGAAGCTTATACCCG+AGG 0.634248 6_1:-27852717 Msa0880980:CDS
AATGGGGAAGACAAGGCTCA+TGG 0.634343 6_1:-27854575 Msa0880980:intron
TTGATCTTTATCGGAATATG+CGG 0.635588 6_1:+27856782 None:intergenic
TCTGTGTAATGGGGAAGACA+AGG 0.636823 6_1:-27854582 Msa0880980:CDS
CTCCGTCAAACATGCCACCA+CGG 0.637279 6_1:-27856826 Msa0880980:CDS
TATCTGTGATAAAGTTGGGG+TGG 0.641380 6_1:+27854208 None:intergenic
GGGTAAAAGATCTTCAATGG+AGG 0.642494 6_1:-27855122 Msa0880980:CDS
ACAATAATTGGAGCTGATGG+CGG 0.645803 6_1:+27856753 None:intergenic
GATCACGATTCTCTCTTCAG+TGG 0.646111 6_1:-27856717 Msa0880980:CDS
CAAAAGAATTCTGTGTAATG+GGG 0.649574 6_1:-27854591 Msa0880980:CDS
AATAGAAATGACAAATGTGT+GGG 0.660964 6_1:-27852624 Msa0880980:three_prime_UTR
TGGTTTATACAGGAACATGG+AGG 0.666436 6_1:-27853478 Msa0880980:intron
AATTCGGTCGCCCAACAACA+CGG 0.676568 6_1:+27853960 None:intergenic
AAAGGATTGAACAGGCTGGG+GGG 0.681345 6_1:-27853594 Msa0880980:CDS
TTATAACATCATATCCACGA+TGG 0.688589 6_1:+27856865 None:intergenic
TTGGGATGTTATATCAAACG+AGG 0.704343 6_1:-27853215 Msa0880980:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAACATAAAATGATT+GGG + chr6_1:27854058-27854077 None:intergenic 10.0%
!!! ATGTTTAATTATTTGTTTTA+TGG - chr6_1:27855270-27855289 Msa0880980:intron 10.0%
!! ATTCCATTAAAAGAAAAATT+TGG - chr6_1:27853818-27853837 Msa0880980:intron 15.0%
!! TTCCATTAAAAGAAAAATTT+GGG - chr6_1:27853819-27853838 Msa0880980:intron 15.0%
!! GTATAAAAACATAAAATGAT+TGG + chr6_1:27854059-27854078 None:intergenic 15.0%
!!! ATCATTTTATGTTTTTATAC+CGG - chr6_1:27854059-27854078 Msa0880980:intron 15.0%
!! AGAATAAACCATAAAAAATT+GGG + chr6_1:27854370-27854389 None:intergenic 15.0%
!! TAGAATAAACCATAAAAAAT+TGG + chr6_1:27854371-27854390 None:intergenic 15.0%
!! AAGTAATTCATATGAAAATA+AGG + chr6_1:27856741-27856760 None:intergenic 15.0%
!! AAATTTACACAAGTGATTTA+AGG - chr6_1:27852740-27852759 Msa0880980:CDS 20.0%
!! ATATGTAGCATATAAATTCA+TGG + chr6_1:27852801-27852820 None:intergenic 20.0%
!! ATATATAGTTTCACAGATAT+TGG + chr6_1:27853017-27853036 None:intergenic 20.0%
!!! ATTTATTATCCTTTACCTTT+TGG + chr6_1:27853110-27853129 None:intergenic 20.0%
!! AAGAAAGTAAAAATTCACTT+TGG + chr6_1:27853139-27853158 None:intergenic 20.0%
!! GATGATAGCAAAATTATTTA+TGG - chr6_1:27853443-27853462 Msa0880980:CDS 20.0%
!!! GTTAAAGCATTAATATTAAG+AGG + chr6_1:27854327-27854346 None:intergenic 20.0%
!! GAATAAACCATAAAAAATTG+GGG + chr6_1:27854369-27854388 None:intergenic 20.0%
!! TTCATCTATTAAGTTATCAA+GGG + chr6_1:27854544-27854563 None:intergenic 20.0%
!! GATCTAATCAAATCTTAAAA+GGG + chr6_1:27854939-27854958 None:intergenic 20.0%
!! TGATCTAATCAAATCTTAAA+AGG + chr6_1:27854940-27854959 None:intergenic 20.0%
!!! TTTAAGATTTGATTAGATCA+TGG - chr6_1:27854940-27854959 Msa0880980:intron 20.0%
!!! CATTCTTTTCAATTTTAGAA+TGG + chr6_1:27854975-27854994 None:intergenic 20.0%
!! CAAAACTGAATTAAACTAAA+GGG + chr6_1:27855545-27855564 None:intergenic 20.0%
!! TTAAGAACCATAAAAACAAA+TGG + chr6_1:27855804-27855823 None:intergenic 20.0%
!!! TATAACAATGAATAATTTGC+TGG - chr6_1:27855833-27855852 Msa0880980:intron 20.0%
!! TAAAAACATATACACAAAGT+GGG + chr6_1:27855994-27856013 None:intergenic 20.0%
!! ATAAAAACATATACACAAAG+TGG + chr6_1:27855995-27856014 None:intergenic 20.0%
!! TTTATAATAATTGCTAGTGA+TGG - chr6_1:27856090-27856109 Msa0880980:intron 20.0%
!!! GCTTTAAACATATCATTATT+GGG + chr6_1:27856198-27856217 None:intergenic 20.0%
!!! TGCTTTAAACATATCATTAT+TGG + chr6_1:27856199-27856218 None:intergenic 20.0%
!! ATGGCAATATTAATATGTAA+TGG + chr6_1:27856265-27856284 None:intergenic 20.0%
!! ACATATTAATATTGCCATAT+CGG - chr6_1:27856267-27856286 Msa0880980:intron 20.0%
!! ATACATATATTTCTTGTACT+TGG - chr6_1:27856330-27856349 Msa0880980:intron 20.0%
!!! GAATTCTAAATTTTATACTC+CGG - chr6_1:27856449-27856468 Msa0880980:intron 20.0%
!! AGTATTTGAAGTGTGATTTA+AGG - chr6_1:27852692-27852711 Msa0880980:CDS 25.0%
! TATCATTGAATATTCGATCA+AGG + chr6_1:27852864-27852883 None:intergenic 25.0%
! CTTTGTAACTATTAATTCAC+AGG - chr6_1:27852964-27852983 Msa0880980:intron 25.0%
! AATCACAATAGTAGTGTATT+AGG - chr6_1:27853054-27853073 Msa0880980:intron 25.0%
! AGATCAAATAGCATTTAACA+GGG + chr6_1:27853295-27853314 None:intergenic 25.0%
! TCGAAATAACCTAATTAAGT+AGG + chr6_1:27853694-27853713 None:intergenic 25.0%
!! GTCCCAAATTTTTCTTTTAA+TGG + chr6_1:27853824-27853843 None:intergenic 25.0%
!!! TTTACTTTTAGCTTACTATC+TGG - chr6_1:27854144-27854163 Msa0880980:intron 25.0%
!!! TATGGATATTCCAGTTTTAA+GGG - chr6_1:27854189-27854208 Msa0880980:intron 25.0%
!! CTTTAACTATATTTTCCTCT+TGG - chr6_1:27854340-27854359 Msa0880980:intron 25.0%
! GTTCATCTATTAAGTTATCA+AGG + chr6_1:27854545-27854564 None:intergenic 25.0%
! AACAAGGATTCCTATAAAAT+TGG - chr6_1:27854789-27854808 Msa0880980:intron 25.0%
! ACAAGGATTCCTATAAAATT+GGG - chr6_1:27854790-27854809 Msa0880980:intron 25.0%
!! AGTATATGCAAATCTTTTGA+CGG - chr6_1:27854837-27854856 Msa0880980:intron 25.0%
! AATCAAATCTTAAAAGGGTT+TGG + chr6_1:27854934-27854953 None:intergenic 25.0%
! ATTCAAAAAGATGCATGAAA+AGG + chr6_1:27855021-27855040 None:intergenic 25.0%
!!! TTTTTAATCTTTTTAGGCCA+TGG - chr6_1:27855046-27855065 Msa0880980:intron 25.0%
! TTAGTATCTGTGATAAAGTT+GGG + chr6_1:27855130-27855149 None:intergenic 25.0%
! CTTCATTTGCGTTAAATTAT+AGG - chr6_1:27855168-27855187 Msa0880980:CDS 25.0%
!!! TGTGGATTTTTTTAATACAG+CGG - chr6_1:27855493-27855512 Msa0880980:intron 25.0%
! GCAAAACTGAATTAAACTAA+AGG + chr6_1:27855546-27855565 None:intergenic 25.0%
! AAAAACACAAGGATGAAAAT+AGG + chr6_1:27855633-27855652 None:intergenic 25.0%
! TTGAAAAGAAGAAAAACACA+AGG + chr6_1:27855644-27855663 None:intergenic 25.0%
! GCAGGTAAATTTCATTTATA+TGG - chr6_1:27855772-27855791 Msa0880980:intron 25.0%
!!! AATAATTTGCTGGTTTATAC+AGG - chr6_1:27855843-27855862 Msa0880980:intron 25.0%
! AGGTGAGACTATTTATATTA+TGG - chr6_1:27856136-27856155 Msa0880980:intron 25.0%
! GGTGAGACTATTTATATTAT+GGG - chr6_1:27856137-27856156 Msa0880980:intron 25.0%
! AAAATAAAACAATGCCGATA+TGG + chr6_1:27856284-27856303 None:intergenic 25.0%
! TCATTCGCATAAACAAATAT+TGG - chr6_1:27856395-27856414 Msa0880980:intron 25.0%
!! TATGCACTATATATCTTTTC+AGG - chr6_1:27856535-27856554 Msa0880980:intron 25.0%
! TTCTTTAATAAGTTCTCTAG+AGG + chr6_1:27856603-27856622 None:intergenic 25.0%
! AAATAGAAATGACAAATGTG+TGG - chr6_1:27856706-27856725 Msa0880980:CDS 25.0%
! AATAGAAATGACAAATGTGT+GGG - chr6_1:27856707-27856726 Msa0880980:CDS 25.0%
TTCAGTATGAACTCTTGATT+TGG + chr6_1:27852417-27852436 None:intergenic 30.0%
TTATAACATCATATCCACGA+TGG + chr6_1:27852469-27852488 None:intergenic 30.0%
TTGATCTTTATCGGAATATG+CGG + chr6_1:27852552-27852571 None:intergenic 30.0%
!! TTAGAAGGCATCACAATAAT+TGG + chr6_1:27852593-27852612 None:intergenic 30.0%
! GGAAGTGTGATGTAAAAATT+AGG - chr6_1:27853199-27853218 Msa0880980:intron 30.0%
GACAGAGCATATAGTAATTT+GGG - chr6_1:27853260-27853279 Msa0880980:CDS 30.0%
CAGATCAAATAGCATTTAAC+AGG + chr6_1:27853296-27853315 None:intergenic 30.0%
!! TGTGCAATGTTATTTCCTTA+AGG - chr6_1:27853916-27853935 Msa0880980:CDS 30.0%
TTCAAAGATTTGAGAGTTGA+AGG + chr6_1:27854085-27854104 None:intergenic 30.0%
! CTATGGATATTCCAGTTTTA+AGG - chr6_1:27854188-27854207 Msa0880980:intron 30.0%
! AGATCTTTTACCCTTAAAAC+TGG + chr6_1:27854202-27854221 None:intergenic 30.0%
TAAGGGTAAAAGATCTTCAA+TGG - chr6_1:27854206-27854225 Msa0880980:CDS 30.0%
!!! TTGGTTTCCCCAATTTTTTA+TGG - chr6_1:27854359-27854378 Msa0880980:intron 30.0%
TGGTTTATTCTATTCGTCAT+AGG - chr6_1:27854379-27854398 Msa0880980:intron 30.0%
AAGAGACAATCTTACTCTAT+AGG + chr6_1:27854426-27854445 None:intergenic 30.0%
TGAATACACCTTTACTTGTT+CGG + chr6_1:27854451-27854470 None:intergenic 30.0%
! ATTCACCGTTTGGAATTATT+AGG - chr6_1:27854666-27854685 Msa0880980:intron 30.0%
!!! TGGTTTTGGTTAAGGTTTTA+TGG - chr6_1:27854715-27854734 Msa0880980:intron 30.0%
AGCAAAAGAATTCTGTGTAA+TGG - chr6_1:27854738-27854757 Msa0880980:intron 30.0%
GCAAAAGAATTCTGTGTAAT+GGG - chr6_1:27854739-27854758 Msa0880980:intron 30.0%
CAAAAGAATTCTGTGTAATG+GGG - chr6_1:27854740-27854759 Msa0880980:intron 30.0%
TAGTATCTGTGATAAAGTTG+GGG + chr6_1:27855129-27855148 None:intergenic 30.0%
CTTAGTATCTGTGATAAAGT+TGG + chr6_1:27855131-27855150 None:intergenic 30.0%
TTGCGTTAAATTATAGGACA+TGG - chr6_1:27855174-27855193 Msa0880980:CDS 30.0%
CTTATCACATTATAGTTGTG+TGG - chr6_1:27855206-27855225 Msa0880980:intron 30.0%
! AGTTCATATTTAGAACATCC+AGG + chr6_1:27855244-27855263 None:intergenic 30.0%
CAACATTTGCAACAAGAATT+CGG + chr6_1:27855390-27855409 None:intergenic 30.0%
TTTAATACAGCGGTCAATAA+AGG - chr6_1:27855503-27855522 Msa0880980:intron 30.0%
TTAATACAGCGGTCAATAAA+GGG - chr6_1:27855504-27855523 Msa0880980:intron 30.0%
!!! GATGTTGCCATTTGTTTTTA+TGG - chr6_1:27855794-27855813 Msa0880980:intron 30.0%
TATATTATGGGCCAACAAAT+AGG - chr6_1:27856149-27856168 Msa0880980:intron 30.0%
ATATTATGGGCCAACAAATA+GGG - chr6_1:27856150-27856169 Msa0880980:intron 30.0%
TTATTGGGTGAAATTCATGT+GGG + chr6_1:27856183-27856202 None:intergenic 30.0%
ATTATTGGGTGAAATTCATG+TGG + chr6_1:27856184-27856203 None:intergenic 30.0%
CATATATTTCTTGTACTTGG+CGG - chr6_1:27856333-27856352 Msa0880980:intron 30.0%
AGTGCATATTATTAGATGCT+CGG + chr6_1:27856523-27856542 None:intergenic 30.0%
! AGTATTTCCTTTTTCCAGAT+AGG + chr6_1:27856827-27856846 None:intergenic 30.0%
TTGTAGATATCATCTGCATT+TGG - chr6_1:27856846-27856865 Msa0880980:CDS 30.0%
ATCACAATAATTGGAGCTGA+TGG + chr6_1:27852584-27852603 None:intergenic 35.0%
AGAGAATCGTGATCTTTAGA+AGG + chr6_1:27852608-27852627 None:intergenic 35.0%
! CAGTGTTACTCTTACTCATA+AGG + chr6_1:27852900-27852919 None:intergenic 35.0%
CTTATGAGTAAGAGTAACAC+TGG - chr6_1:27852898-27852917 Msa0880980:intron 35.0%
! AAGTGGCTAAAAAAGTTGGT+GGG + chr6_1:27852934-27852953 None:intergenic 35.0%
CATCAAGTGGCTAAAAAAGT+TGG + chr6_1:27852938-27852957 None:intergenic 35.0%
!!! TTTTTTAGCCACTTGATGCT+TGG - chr6_1:27852940-27852959 Msa0880980:intron 35.0%
ACGTTCAAACCAAAAGGTAA+AGG - chr6_1:27853098-27853117 Msa0880980:intron 35.0%
CGACAGAGCATATAGTAATT+TGG - chr6_1:27853259-27853278 Msa0880980:CDS 35.0%
ACCTTGAATTGTCATTGTCA+GGG + chr6_1:27853333-27853352 None:intergenic 35.0%
AACCTTGAATTGTCATTGTC+AGG + chr6_1:27853334-27853353 None:intergenic 35.0%
CTAATTAAGTAGGATCGAGA+AGG + chr6_1:27853684-27853703 None:intergenic 35.0%
CTTCTCGATCCTACTTAATT+AGG - chr6_1:27853682-27853701 Msa0880980:intron 35.0%
CAACACACAAAATCACAACT+AGG + chr6_1:27853718-27853737 None:intergenic 35.0%
! TTGCCATCAGCTATAGATTT+TGG + chr6_1:27853887-27853906 None:intergenic 35.0%
CCATTGCATATAATGCCAAT+GGG + chr6_1:27853984-27854003 None:intergenic 35.0%
ACCATTGCATATAATGCCAA+TGG + chr6_1:27853985-27854004 None:intergenic 35.0%
TTAGCTTACTATCTGGAAGT+CGG - chr6_1:27854151-27854170 Msa0880980:intron 35.0%
!!! GGCTTTTTTGGTGTTTTTGA+TGG - chr6_1:27854276-27854295 Msa0880980:intron 35.0%
!! TGTTTTTGATGGTATGTCCT+AGG - chr6_1:27854287-27854306 Msa0880980:intron 35.0%
!! GTTTTTGATGGTATGTCCTA+GGG - chr6_1:27854288-27854307 Msa0880980:intron 35.0%
AGGTACAAAACAAAAACCCT+AGG + chr6_1:27854307-27854326 None:intergenic 35.0%
AAAAAATTGGGGAAACCAAG+AGG + chr6_1:27854358-27854377 None:intergenic 35.0%
GTGTATTCAGTATTCACTGT+TGG - chr6_1:27854462-27854481 Msa0880980:intron 35.0%
!! AGAGCTTTTTCCAATATGCT+TGG - chr6_1:27854575-27854594 Msa0880980:intron 35.0%
!! GAGCTTTTTCCAATATGCTT+GGG - chr6_1:27854576-27854595 Msa0880980:CDS 35.0%
GTAATTGAACCCAAGCATAT+TGG + chr6_1:27854588-27854607 None:intergenic 35.0%
TATGCTTGGGTTCAATTACT+AGG - chr6_1:27854589-27854608 Msa0880980:CDS 35.0%
TGCTGCCTAATAATTCCAAA+CGG + chr6_1:27854674-27854693 None:intergenic 35.0%
!!! TTGTAGGATGGTTTTGGTTA+AGG - chr6_1:27854707-27854726 Msa0880980:intron 35.0%
AGGATTCCTATAAAATTGGG+AGG - chr6_1:27854793-27854812 Msa0880980:intron 35.0%
GGATTCCTATAAAATTGGGA+GGG - chr6_1:27854794-27854813 Msa0880980:intron 35.0%
AATGCTTTGTACAGCAAAGA+GGG - chr6_1:27854889-27854908 Msa0880980:intron 35.0%
!! TTAATCTTTTTAGGCCATGG+AGG - chr6_1:27855049-27855068 Msa0880980:intron 35.0%
GCAAATGAAGTACATACCAA+TGG + chr6_1:27855158-27855177 None:intergenic 35.0%
CACATTATAGTTGTGTGGTT+TGG - chr6_1:27855211-27855230 Msa0880980:intron 35.0%
TGATTACCTCAAAGAGGAAA+TGG - chr6_1:27855321-27855340 Msa0880980:intron 35.0%
GATTACCTCAAAGAGGAAAT+GGG - chr6_1:27855322-27855341 Msa0880980:intron 35.0%
CGAATTCTTGTTGCAAATGT+TGG - chr6_1:27855388-27855407 Msa0880980:intron 35.0%
GAATTAGATTGGACACAATG+TGG - chr6_1:27855475-27855494 Msa0880980:intron 35.0%
GGTTTGTGATCAACAGATAA+AGG + chr6_1:27855697-27855716 None:intergenic 35.0%
CTGTTGATCACAAACCTAAT+AGG - chr6_1:27855701-27855720 Msa0880980:intron 35.0%
TTTAGCCAACCTGAATTTCT+GGG + chr6_1:27855947-27855966 None:intergenic 35.0%
! TTTTAGCCAACCTGAATTTC+TGG + chr6_1:27855948-27855967 None:intergenic 35.0%
AACATATACACAAAGTGGGT+AGG + chr6_1:27855990-27856009 None:intergenic 35.0%
CTACTAATTTATCCCCTCTT+TGG - chr6_1:27856026-27856045 Msa0880980:intron 35.0%
!!! TTTGGATACTCTTTTGGCTT+AGG - chr6_1:27856044-27856063 Msa0880980:intron 35.0%
TAATTGCTAGTGATGGTCTT+TGG - chr6_1:27856097-27856116 Msa0880980:intron 35.0%
AATTGCTAGTGATGGTCTTT+GGG - chr6_1:27856098-27856117 Msa0880980:intron 35.0%
TTGGGATGTTATATCAAACG+AGG - chr6_1:27856116-27856135 Msa0880980:intron 35.0%
! AATTTTATACTCCGGCAACT+TGG - chr6_1:27856457-27856476 Msa0880980:intron 35.0%
!!! ACTTGGTGTTGGTACATTTT+CGG - chr6_1:27856474-27856493 Msa0880980:intron 35.0%
GTGCATATTATTAGATGCTC+GGG + chr6_1:27856522-27856541 None:intergenic 35.0%
!! GCACTATATATCTTTTCAGG+AGG - chr6_1:27856538-27856557 Msa0880980:intron 35.0%
!! CTATATATCTTTTCAGGAGG+CGG - chr6_1:27856541-27856560 Msa0880980:intron 35.0%
AAATTTCTCTGATGCAGAAG+TGG - chr6_1:27856577-27856596 Msa0880980:intron 35.0%
ATTAAAGAAGCTTATACCCG+AGG - chr6_1:27856614-27856633 Msa0880980:intron 35.0%
TCTTCTTGATTACTCCTATC+TGG - chr6_1:27856810-27856829 Msa0880980:CDS 35.0%
GATTACTCCTATCTGGAAAA+AGG - chr6_1:27856817-27856836 Msa0880980:CDS 35.0%
!!! GCATTTGGTTTTACACATGA+AGG - chr6_1:27856861-27856880 Msa0880980:CDS 35.0%
AGAGGATCACAATAAATAGC+TGG + chr6_1:27856902-27856921 None:intergenic 35.0%
CCTGTAATTTATCTGTTCAG+AGG + chr6_1:27856920-27856939 None:intergenic 35.0%
CCTCTGAACAGATAAATTAC+AGG - chr6_1:27856917-27856936 Msa0880980:CDS 35.0%
ATCTTTATCGGAATATGCGG+AGG + chr6_1:27852549-27852568 None:intergenic 40.0%
ACAATAATTGGAGCTGATGG+CGG + chr6_1:27852581-27852600 None:intergenic 40.0%
CAAGTGGCTAAAAAAGTTGG+TGG + chr6_1:27852935-27852954 None:intergenic 40.0%
TACAAAGTCCAAGCATCAAG+TGG + chr6_1:27852951-27852970 None:intergenic 40.0%
TGTAGCTTGAAACCCAGAAT+AGG - chr6_1:27853177-27853196 Msa0880980:intron 40.0%
GTAGCTTGAAACCCAGAATA+GGG - chr6_1:27853178-27853197 Msa0880980:intron 40.0%
ACATCACACTTCCCTATTCT+GGG + chr6_1:27853192-27853211 None:intergenic 40.0%
TACATCACACTTCCCTATTC+TGG + chr6_1:27853193-27853212 None:intergenic 40.0%
TCCCTGACAATGACAATTCA+AGG - chr6_1:27853329-27853348 Msa0880980:intron 40.0%
TGTGCTATCCTGAGTGTTTA+TGG - chr6_1:27853486-27853505 Msa0880980:intron 40.0%
ATTCGAGTCCATAAACACTC+AGG + chr6_1:27853497-27853516 None:intergenic 40.0%
GAATTTACTCGAGTCATGTG+CGG - chr6_1:27853513-27853532 Msa0880980:intron 40.0%
!! ATCAGCTATAGATTTTGGCC+TGG + chr6_1:27853882-27853901 None:intergenic 40.0%
AGGCCAAAATCTATAGCTGA+TGG - chr6_1:27853881-27853900 Msa0880980:intron 40.0%
CCCATTGGCATTATATGCAA+TGG - chr6_1:27853981-27854000 Msa0880980:CDS 40.0%
AATGATTGGGTGACATTCGA+GGG + chr6_1:27854045-27854064 None:intergenic 40.0%
AAATGATTGGGTGACATTCG+AGG + chr6_1:27854046-27854065 None:intergenic 40.0%
AAGATTTGAGAGTTGAAGGC+CGG + chr6_1:27854081-27854100 None:intergenic 40.0%
TTACTATCTGGAAGTCGGAA+TGG - chr6_1:27854156-27854175 Msa0880980:intron 40.0%
GGGTAAAAGATCTTCAATGG+AGG - chr6_1:27854209-27854228 Msa0880980:CDS 40.0%
!! CTTTGAGACCAAAGTATCAG+AGG - chr6_1:27854236-27854255 Msa0880980:CDS 40.0%
! ACCAAAGTATCAGAGGTTGA+TGG - chr6_1:27854243-27854262 Msa0880980:CDS 40.0%
ACCATCAACCTCTGATACTT+TGG + chr6_1:27854247-27854266 None:intergenic 40.0%
! ACTCTATAGGAGTCTTATCC+TGG + chr6_1:27854413-27854432 None:intergenic 40.0%
TCTCTTAGCCGAACAAGTAA+AGG - chr6_1:27854440-27854459 Msa0880980:intron 40.0%
AGCAGTGCGTAATAAGATCA+TGG + chr6_1:27854504-27854523 None:intergenic 40.0%
! TAGAGCATCAGAAATGAGCT+TGG - chr6_1:27854635-27854654 Msa0880980:CDS 40.0%
! TACGAGTTGTAGGATGGTTT+TGG - chr6_1:27854701-27854720 Msa0880980:intron 40.0%
TCATGGTTCTCAACTCAACA+AGG - chr6_1:27854773-27854792 Msa0880980:intron 40.0%
CAATGCTTTGTACAGCAAAG+AGG - chr6_1:27854888-27854907 Msa0880980:intron 40.0%
TATCTGTGATAAAGTTGGGG+TGG + chr6_1:27855126-27855145 None:intergenic 40.0%
ACAGATACTAAGACAGCCAT+TGG - chr6_1:27855139-27855158 Msa0880980:CDS 40.0%
! AGACGTTGATTACCTCAAAG+AGG - chr6_1:27855315-27855334 Msa0880980:intron 40.0%
AGTTCCATGTCAATTACGTG+TGG - chr6_1:27855449-27855468 Msa0880980:intron 40.0%
GTTCCATGTCAATTACGTGT+GGG - chr6_1:27855450-27855469 Msa0880980:intron 40.0%
ACGTGTGGGAAGAATTAGAT+TGG - chr6_1:27855464-27855483 Msa0880980:intron 40.0%
!! TGCTGGTTTATACAGGAACA+TGG - chr6_1:27855850-27855869 Msa0880980:intron 40.0%
TGGTTTATACAGGAACATGG+AGG - chr6_1:27855853-27855872 Msa0880980:intron 40.0%
GGTTTATACAGGAACATGGA+GGG - chr6_1:27855854-27855873 Msa0880980:intron 40.0%
!! CCAAAAGAGTATCCAAAGAG+GGG + chr6_1:27856041-27856060 None:intergenic 40.0%
!! GCCAAAAGAGTATCCAAAGA+GGG + chr6_1:27856042-27856061 None:intergenic 40.0%
!! AGCCAAAAGAGTATCCAAAG+AGG + chr6_1:27856043-27856062 None:intergenic 40.0%
AAATAGCTGGATCCGAGATA+TGG + chr6_1:27856889-27856908 None:intergenic 40.0%
! AGTACTTTTCTCGTCCATCG+TGG - chr6_1:27852452-27852471 Msa0880980:three_prime_UTR 45.0%
TTTATCGGAATATGCGGAGG+AGG + chr6_1:27852546-27852565 None:intergenic 45.0%
! CGGTGAGGGTTGATCTTTAT+CGG + chr6_1:27852561-27852580 None:intergenic 45.0%
GATCACGATTCTCTCTTCAG+TGG - chr6_1:27852614-27852633 Msa0880980:three_prime_UTR 45.0%
!! GCTAAAAAAGTTGGTGGGAG+GGG + chr6_1:27852929-27852948 None:intergenic 45.0%
!! GGCTAAAAAAGTTGGTGGGA+GGG + chr6_1:27852930-27852949 None:intergenic 45.0%
!! TGGCTAAAAAAGTTGGTGGG+AGG + chr6_1:27852931-27852950 None:intergenic 45.0%
!!! CCTTTTGGTTTGAACGTCGT+AGG + chr6_1:27853095-27853114 None:intergenic 45.0%
CCTACGACGTTCAAACCAAA+AGG - chr6_1:27853092-27853111 Msa0880980:intron 45.0%
ATCTTGCACGCGATTCAGAT+TGG + chr6_1:27853415-27853434 None:intergenic 45.0%
GTTTCTGACCAAGATCAGGA+GGG + chr6_1:27853754-27853773 None:intergenic 45.0%
AGTTTCTGACCAAGATCAGG+AGG + chr6_1:27853755-27853774 None:intergenic 45.0%
TCGAGTTTCTGACCAAGATC+AGG + chr6_1:27853758-27853777 None:intergenic 45.0%
GACATGTGAAATTGCCGTGT+TGG - chr6_1:27853841-27853860 Msa0880980:intron 45.0%
GGTAAGCACTTGATCCAACA+CGG + chr6_1:27853858-27853877 None:intergenic 45.0%
!! AGCTATAGATTTTGGCCTGG+AGG + chr6_1:27853879-27853898 None:intergenic 45.0%
!!! TTTTGCTGGCTTTCATGCGT+GGG + chr6_1:27854022-27854041 None:intergenic 45.0%
TATCTGGAAGTCGGAATGGA+AGG - chr6_1:27854160-27854179 Msa0880980:intron 45.0%
!! ATCAGAGGTTGATGGTCAGA+TGG - chr6_1:27854251-27854270 Msa0880980:CDS 45.0%
!!! GGTCAGATGGTTGGCTTTTT+TGG - chr6_1:27854264-27854283 Msa0880980:CDS 45.0%
GGTAGACGATATTCACCGTT+TGG - chr6_1:27854656-27854675 Msa0880980:intron 45.0%
TGGAATTATTAGGCAGCAGC+AGG - chr6_1:27854676-27854695 Msa0880980:intron 45.0%
! TCTGTGTAATGGGGAAGACA+AGG - chr6_1:27854749-27854768 Msa0880980:intron 45.0%
! GTACGCCCTCCCAATTTTAT+AGG + chr6_1:27854802-27854821 None:intergenic 45.0%
CTTCCCACACGTAATTGACA+TGG + chr6_1:27855456-27855475 None:intergenic 45.0%
TGACGCTCATCAGACCTATT+AGG + chr6_1:27855718-27855737 None:intergenic 45.0%
ATAGGTCTGATGAGCGTCAA+AGG - chr6_1:27855719-27855738 Msa0880980:intron 45.0%
TGAGCGTCAAAGGATTGAAC+AGG - chr6_1:27855729-27855748 Msa0880980:intron 45.0%
GTCAAAGGATTGAACAGGCT+GGG - chr6_1:27855734-27855753 Msa0880980:intron 45.0%
TCAAAGGATTGAACAGGCTG+GGG - chr6_1:27855735-27855754 Msa0880980:intron 45.0%
TATACAGGAACATGGAGGGT+TGG - chr6_1:27855858-27855877 Msa0880980:intron 45.0%
AAGCTTGTCTCCAAATGCAC+GGG + chr6_1:27855901-27855920 None:intergenic 45.0%
GAAGCTTGTCTCCAAATGCA+CGG + chr6_1:27855902-27855921 None:intergenic 45.0%
TCTGGGTCAGCAACAACATA+TGG + chr6_1:27855930-27855949 None:intergenic 45.0%
TGTTGCTGACCCAGAAATTC+AGG - chr6_1:27855935-27855954 Msa0880980:intron 45.0%
! CCCCTCTTTGGATACTCTTT+TGG - chr6_1:27856038-27856057 Msa0880980:intron 45.0%
!!! GGATACTCTTTTGGCTTAGG+AGG - chr6_1:27856047-27856066 Msa0880980:intron 45.0%
GCTTAGGAGGAAGAAGTTGA+AGG - chr6_1:27856060-27856079 Msa0880980:intron 45.0%
ATGTACCAACACCAAGTTGC+CGG + chr6_1:27856471-27856490 None:intergenic 45.0%
TGATGTTGTCTGAGCTTCCT+CGG + chr6_1:27856634-27856653 None:intergenic 45.0%
CACATGAAGGCTCCATATCT+CGG - chr6_1:27856874-27856893 Msa0880980:CDS 45.0%
!!! TTAATTTTTTTAATCTTTTT+AGG - chr6_1:27855040-27855059 Msa0880980:intron 5.0%
!!! GGAGGAGGTTTTTTCTCCGA+CGG + chr6_1:27852531-27852550 None:intergenic 50.0%
CACGATTCTCTCTTCAGTGG+CGG - chr6_1:27852617-27852636 Msa0880980:three_prime_UTR 50.0%
TCAGATTGGAAGGGGTGAGT+AGG + chr6_1:27853401-27853420 None:intergenic 50.0%
CACGCGATTCAGATTGGAAG+GGG + chr6_1:27853409-27853428 None:intergenic 50.0%
GCACGCGATTCAGATTGGAA+GGG + chr6_1:27853410-27853429 None:intergenic 50.0%
TGCACGCGATTCAGATTGGA+AGG + chr6_1:27853411-27853430 None:intergenic 50.0%
TGGATCAAGTGCTTACCTCC+AGG - chr6_1:27853861-27853880 Msa0880980:intron 50.0%
GCAAACGCTAAAGCTAGACG+CGG + chr6_1:27853952-27853971 None:intergenic 50.0%
TTTCATGCGTGGGATTCAGC+AGG + chr6_1:27854012-27854031 None:intergenic 50.0%
!!! GTTTTGCTGGCTTTCATGCG+TGG + chr6_1:27854023-27854042 None:intergenic 50.0%
! GTGACATTCGAGGGTTTTGC+TGG + chr6_1:27854036-27854055 None:intergenic 50.0%
CGGAATGGAAGGATCAGCTA+TGG - chr6_1:27854171-27854190 Msa0880980:intron 50.0%
!! GAGGTTGATGGTCAGATGGT+TGG - chr6_1:27854255-27854274 Msa0880980:CDS 50.0%
TCGTCATAGGACAATCTGCC+AGG - chr6_1:27854392-27854411 Msa0880980:intron 50.0%
CAGGCTTACGAGTTGTAGGA+TGG - chr6_1:27854695-27854714 Msa0880980:intron 50.0%
AATGGGGAAGACAAGGCTCA+TGG - chr6_1:27854756-27854775 Msa0880980:intron 50.0%
CGTGTCCCATTTCCTCTTTG+AGG + chr6_1:27855330-27855349 None:intergenic 50.0%
AAAGAGGAAATGGGACACGC+TGG - chr6_1:27855331-27855350 Msa0880980:intron 50.0%
AAGAGGAAATGGGACACGCT+GGG - chr6_1:27855332-27855351 Msa0880980:intron 50.0%
! GCATCAACAGCCGTGTTGTT+GGG - chr6_1:27855361-27855380 Msa0880980:intron 50.0%
AATTCGGTCGCCCAACAACA+CGG + chr6_1:27855374-27855393 None:intergenic 50.0%
! GTTGCATCGAGAGCTGGTTT+AGG - chr6_1:27855424-27855443 Msa0880980:intron 50.0%
CGTCAAAGGATTGAACAGGC+TGG - chr6_1:27855733-27855752 Msa0880980:intron 50.0%
CAAAGGATTGAACAGGCTGG+GGG - chr6_1:27855736-27855755 Msa0880980:intron 50.0%
AAAGGATTGAACAGGCTGGG+GGG - chr6_1:27855737-27855756 Msa0880980:intron 50.0%
!! CTTGCTGTTTCCCGTGCATT+TGG - chr6_1:27855888-27855907 Msa0880980:intron 50.0%
GCTGACCCAGAAATTCAGGT+TGG - chr6_1:27855939-27855958 Msa0880980:intron 50.0%
GGGTCTGACTCCCTATTTGT+TGG + chr6_1:27856163-27856182 None:intergenic 50.0%
!! ATACTCCGGCAACTTGGTGT+TGG - chr6_1:27856463-27856482 Msa0880980:intron 50.0%
!! TTTTCAGGAGGCGGTGTCTT+TGG - chr6_1:27856550-27856569 Msa0880980:intron 50.0%
GATGTTGTCTGAGCTTCCTC+GGG + chr6_1:27856633-27856652 None:intergenic 50.0%
CCAGAAGTCGCATTAGGATG+TGG + chr6_1:27856680-27856699 None:intergenic 50.0%
CCACATCCTAATGCGACTTC+TGG - chr6_1:27856677-27856696 Msa0880980:intron 50.0%
CAGTTGCCAGAAGTCGCATT+AGG + chr6_1:27856686-27856705 None:intergenic 50.0%
GGTGGCATGTTTGACGGAGT+CGG + chr6_1:27852504-27852523 None:intergenic 55.0%
CTCCGTCAAACATGCCACCA+CGG - chr6_1:27852505-27852524 Msa0880980:three_prime_UTR 55.0%
!! ATTGGAGCTGATGGCGGTGA+GGG + chr6_1:27852575-27852594 None:intergenic 55.0%
!! AATTGGAGCTGATGGCGGTG+AGG + chr6_1:27852576-27852595 None:intergenic 55.0%
GATTCTCTCTTCAGTGGCGG+TGG - chr6_1:27852620-27852639 Msa0880980:three_prime_UTR 55.0%
TACTCGAGTCATGTGCGGTC+TGG - chr6_1:27853518-27853537 Msa0880980:intron 55.0%
CGTGTGTCTGTGTGTGTGTG+TGG - chr6_1:27853588-27853607 Msa0880980:CDS 55.0%
TTGCTACGCCCTCCTGATCT+TGG - chr6_1:27853743-27853762 Msa0880980:intron 55.0%
!! CGCGGCTCTGAGAATCCTTA+AGG + chr6_1:27853934-27853953 None:intergenic 55.0%
GTTTGCAGTGCTGCACCCAT+TGG - chr6_1:27853966-27853985 Msa0880980:CDS 55.0%
GCAGCAGGCTTACGAGTTGT+AGG - chr6_1:27854691-27854710 Msa0880980:intron 55.0%
!! GTGTGGTTTGGTCTGCTACC+TGG - chr6_1:27855223-27855242 Msa0880980:intron 55.0%
GGCATCAACAGCCGTGTTGT+TGG - chr6_1:27855360-27855379 Msa0880980:intron 55.0%
CGAGTAGTTGCATCGAGAGC+TGG - chr6_1:27855418-27855437 Msa0880980:intron 55.0%
AGGCTGGGGGGTTCGTAATA+TGG - chr6_1:27855749-27855768 Msa0880980:intron 55.0%
GGCTGGGGGGTTCGTAATAT+GGG - chr6_1:27855750-27855769 Msa0880980:intron 55.0%
ACAGGAACATGGAGGGTTGG+CGG - chr6_1:27855861-27855880 Msa0880980:intron 55.0%
GGAGGAAGAAGTTGAAGGCG+TGG - chr6_1:27856065-27856084 Msa0880980:intron 55.0%
GGCCGTGGTGGCATGTTTGA+CGG + chr6_1:27852510-27852529 None:intergenic 60.0%
AAACATGCCACCACGGCCGT+CGG - chr6_1:27852512-27852531 Msa0880980:three_prime_UTR 60.0%
! TTTTTCTCCGACGGCCGTGG+TGG + chr6_1:27852522-27852541 None:intergenic 60.0%
!!! GGTTTTTTCTCCGACGGCCG+TGG + chr6_1:27852525-27852544 None:intergenic 60.0%
TCTTCAGTGGCGGTGGCATC+AGG - chr6_1:27852627-27852646 Msa0880980:three_prime_UTR 60.0%
CTGCAGTTCGCGAACCTCCA+TGG + chr6_1:27855066-27855085 None:intergenic 60.0%
AATGGGACACGCTGGGTCCA+CGG - chr6_1:27855339-27855358 Msa0880980:intron 60.0%
CAACACGGCTGTTGATGCCG+TGG + chr6_1:27855359-27855378 None:intergenic 60.0%
GGGGGGTTCGTAATATGGGC+AGG - chr6_1:27855754-27855773 Msa0880980:intron 60.0%
GACGCGCGTGTGTCTGTGTG+TGG - chr6_1:27853613-27853632 Msa0880980:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 27852398 27856955 27852398 ID=Msa0880980;Name=Msa0880980
chr6_1 mRNA 27852398 27856955 27852398 ID=Msa0880980-mRNA-1;Parent=Msa0880980;Name=Msa0880980-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.75|0.77|0.88|1|1|9|249|377
chr6_1 exon 27852398 27852796 27852398 ID=Msa0880980-mRNA-1:exon:6920;Parent=Msa0880980-mRNA-1
chr6_1 exon 27853216 27853287 27853216 ID=Msa0880980-mRNA-1:exon:6919;Parent=Msa0880980-mRNA-1
chr6_1 exon 27853397 27853488 27853397 ID=Msa0880980-mRNA-1:exon:6918;Parent=Msa0880980-mRNA-1
chr6_1 exon 27853578 27853664 27853578 ID=Msa0880980-mRNA-1:exon:6917;Parent=Msa0880980-mRNA-1
chr6_1 exon 27853908 27854057 27853908 ID=Msa0880980-mRNA-1:exon:6916;Parent=Msa0880980-mRNA-1
chr6_1 exon 27854193 27854291 27854193 ID=Msa0880980-mRNA-1:exon:6915;Parent=Msa0880980-mRNA-1
chr6_1 exon 27854576 27854665 27854576 ID=Msa0880980-mRNA-1:exon:6914;Parent=Msa0880980-mRNA-1
chr6_1 exon 27855056 27855198 27855056 ID=Msa0880980-mRNA-1:exon:6913;Parent=Msa0880980-mRNA-1
chr6_1 exon 27856705 27856955 27856705 ID=Msa0880980-mRNA-1:exon:6912;Parent=Msa0880980-mRNA-1
chr6_1 CDS 27856705 27856955 27856705 ID=Msa0880980-mRNA-1:cds;Parent=Msa0880980-mRNA-1
chr6_1 CDS 27855056 27855198 27855056 ID=Msa0880980-mRNA-1:cds;Parent=Msa0880980-mRNA-1
chr6_1 CDS 27854576 27854665 27854576 ID=Msa0880980-mRNA-1:cds;Parent=Msa0880980-mRNA-1
chr6_1 CDS 27854193 27854291 27854193 ID=Msa0880980-mRNA-1:cds;Parent=Msa0880980-mRNA-1
chr6_1 CDS 27853908 27854057 27853908 ID=Msa0880980-mRNA-1:cds;Parent=Msa0880980-mRNA-1
chr6_1 CDS 27853578 27853664 27853578 ID=Msa0880980-mRNA-1:cds;Parent=Msa0880980-mRNA-1
chr6_1 CDS 27853397 27853488 27853397 ID=Msa0880980-mRNA-1:cds;Parent=Msa0880980-mRNA-1
chr6_1 CDS 27853216 27853287 27853216 ID=Msa0880980-mRNA-1:cds;Parent=Msa0880980-mRNA-1
chr6_1 CDS 27852647 27852796 27852647 ID=Msa0880980-mRNA-1:cds;Parent=Msa0880980-mRNA-1
chr6_1 three_prime_UTR 27852398 27852646 27852398 ID=Msa0880980-mRNA-1:three_prime_utr;Parent=Msa0880980-mRNA-1
Gene Sequence

>Msa0880980

ATGAGATACAATTGGACCAAATCAAGAGTTCATACTGAAGTCGTTTGTCTTTTGAGTACTTTTCTCGTCCATCGTGGATATGATGTTATAATGATCTCAGACACCGACTCCGTCAAACATGCCACCACGGCCGTCGGAGAAAAAACCTCCTCCGCATATTCCGATAAAGATCAACCCTCACCGCCATCAGCTCCAATTATTGTGATGCCTTCTAAAGATCACGATTCTCTCTTCAGTGGCGGTGGCATCAGCTTACTATCTGGAAGTCGGAATGGAAGGATCAGCTATGGATATTCCAGTTTTAAGGGTAAAAGATCTTCAATGGAGGATTTCTTTGAGACCAAAGTATCAGAGGTTGATGGTCAGATGGTTGGCTTTTTTGGTGTTTTTGATGGCAGCAGCAGGCTTACGAGTTGTAGGATGGTTTTGGTTAAGGTTTTATGGAGCAAAAGAATTCTGTGTAATGGGGAAGACAAGGCTCATGGCCATGGAGGTTCGCGAACTGCAGAATATCTGAAAAATAATTTATTCAAGAATTTGTGTAGCCACCCCAACTTTATCACAGATACTAAGACAGCCATTGTTGAAGCATTTAAACAAACAGACGTTGATTACCTCAAAGAGGAAATGGGACACGCTGGGTCCACGGCATCAACAGCCGTGTTGTTGGGCGACCGAATTCTTGTTGCAAATGTTGGTGATTCTCGAGTAGTTGCATCGAGAGCTGGTTTAGCTGTTCCTTTATCTGTTGATCACAAACCTAATAGGTCTGATGAGCGTCAAAGGATTGAACAGGCTGGGGGGTTCGTAATATGGGCAGGAACATGGAGGGTTGGCGGCATTCTTGCTGTTTCCCGTGCATTTGGAGACAAGCTTCTTAGACCATATGTTGTTGCTGACCCAGAAATTCAGGAGGAAGAAGTTGAAGGCGTGGATTTTATAATAATTGCTAGTGATGGTCTTTGGGATGTTATATCAAACGAGGAGGCGGTGTCTTTGGTACAAAATTTCTCTGATGCAGAAGTGGCCTCTAGAGAACTTATTAAAGAAGCTTATACCCGAGGAAGCTCAGACAACATCACTTGTGTTGTTGTTCGATTTGATCCACATCCTAATGCGACTTCTGGCAACTGA
Protein sequence

>Msa0880980

MRYNWTKSRVHTEVVCLLSTFLVHRGYDVIMISDTDSVKHATTAVGEKTSSAYSDKDQPSPPSAPIIVMPSKDHDSLFSGGGISLLSGSRNGRISYGYSSFKGKRSSMEDFFETKVSEVDGQMVGFFGVFDGSSRLTSCRMVLVKVLWSKRILCNGEDKAHGHGGSRTAEYLKNNLFKNLCSHPNFITDTKTAIVEAFKQTDVDYLKEEMGHAGSTASTAVLLGDRILVANVGDSRVVASRAGLAVPLSVDHKPNRSDERQRIEQAGGFVIWAGTWRVGGILAVSRAFGDKLLRPYVVADPEIQEEEVEGVDFIIIASDGLWDVISNEEAVSLVQNFSDAEVASRELIKEAYTRGSSDNITCVVVRFDPHPNATSGN*