Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045990 | Msa0437860 | 0.945689 | 1.907513e-104 | -8.615850e-47 |
| Msa0045990 | Msa0528570 | 0.800154 | 1.646078e-48 | -8.615850e-47 |
| Msa0045990 | Msa0793170 | 0.942834 | 3.557884e-102 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045990 | MtrunA17_Chr1g0213221 | 98.366 | 918 | 14 | 1 | 1 | 917 | 1 | 918 | 0.0 | 1849 |
| Msa0045990 | MtrunA17_Chr5g0422951 | 62.011 | 179 | 21 | 3 | 443 | 619 | 156 | 289 | 4.15e-51 | 186 |
| Msa0045990 | MtrunA17_Chr5g0422951 | 55.147 | 136 | 49 | 6 | 352 | 476 | 278 | 412 | 2.30e-25 | 110 |
| Msa0045990 | MtrunA17_Chr4g0002081 | 32.487 | 197 | 68 | 4 | 704 | 900 | 95 | 226 | 9.37e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045990 | AT3G55060.2 | 46.253 | 934 | 443 | 14 | 1 | 914 | 1 | 895 | 0.0 | 677 |
| Msa0045990 | AT3G55060.1 | 46.253 | 934 | 443 | 14 | 1 | 914 | 1 | 895 | 0.0 | 677 |
| Msa0045990 | AT2G39300.1 | 42.581 | 930 | 414 | 21 | 1 | 912 | 1 | 828 | 0.0 | 608 |
| Msa0045990 | AT2G39300.2 | 42.581 | 930 | 414 | 21 | 1 | 912 | 1 | 828 | 0.0 | 608 |
| Msa0045990 | AT2G39300.4 | 42.581 | 930 | 414 | 21 | 1 | 912 | 1 | 828 | 0.0 | 608 |
| Msa0045990 | AT3G55060.3 | 46.420 | 838 | 391 | 13 | 1 | 819 | 1 | 799 | 0.0 | 605 |
| Msa0045990 | AT2G39300.3 | 42.345 | 921 | 395 | 22 | 1 | 912 | 1 | 794 | 0.0 | 597 |
Find 198 sgRNAs with CRISPR-Local
Find 351 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCATATCTCTCTCTTTA+TGG | 0.095946 | 1_1:+78000300 | Msa0045990:five_prime_UTR |
| CAGCAATTTGGGACCTTATA+TGG | 0.121815 | 1_1:-78002568 | None:intergenic |
| TATTCTTCTTTCAAAGAAAT+TGG | 0.188162 | 1_1:+78002439 | Msa0045990:CDS |
| CAGATGCTCTGTCAGCAATT+TGG | 0.216808 | 1_1:-78002580 | None:intergenic |
| ACTCCATTAGTTGGCGAATT+AGG | 0.227948 | 1_1:-78002005 | None:intergenic |
| TCTCGCACCTCTGGGAATTT+TGG | 0.230603 | 1_1:-78001776 | None:intergenic |
| AGCAACTTGCTTTCTAGATT+TGG | 0.230610 | 1_1:-78001444 | None:intergenic |
| AAAGAGAATGGACAGATTAT+TGG | 0.252349 | 1_1:+78003433 | Msa0045990:CDS |
| TCCCTCTCCTCTGACACTTT+TGG | 0.259321 | 1_1:-78005373 | None:intergenic |
| CAACAGAATGGTTCTTATTA+AGG | 0.268992 | 1_1:-78003123 | None:intergenic |
| ATACTTGTGTTCAAAGTTAC+TGG | 0.269237 | 1_1:+78003402 | Msa0045990:CDS |
| GACAAAAGACCCTGTCTCTA+TGG | 0.296604 | 1_1:+78005541 | Msa0045990:CDS |
| GAGCAAGAGAAGACAATAAT+AGG | 0.297652 | 1_1:+78003076 | Msa0045990:CDS |
| AAACTTGTGATATTTCTAAA+AGG | 0.300185 | 1_1:+78002168 | Msa0045990:CDS |
| AGATGCTCTGTCAGCAATTT+GGG | 0.301976 | 1_1:-78002579 | None:intergenic |
| ATTCCTCTGTGAACTGCTCC+TGG | 0.305181 | 1_1:-78001925 | None:intergenic |
| AATGTCCTCGGCTTCCTTCC+AGG | 0.310353 | 1_1:+78001514 | Msa0045990:CDS |
| ACATTGACCTGCTCCTTCTA+AGG | 0.312987 | 1_1:-78001496 | None:intergenic |
| TATCCATTGGACATTCTATA+AGG | 0.326559 | 1_1:-78002314 | None:intergenic |
| GACCTGCTCCTTCTAAGGTT+TGG | 0.333731 | 1_1:-78001491 | None:intergenic |
| GACTGCTCATTTGTTGACTT+TGG | 0.340876 | 1_1:-78001350 | None:intergenic |
| AATGGACAGATTATTGGAAA+TGG | 0.343957 | 1_1:+78003439 | Msa0045990:CDS |
| TAGATATCTTCGATTGTGAT+TGG | 0.345214 | 1_1:-78002218 | None:intergenic |
| ACCTTCCTTAATGAGTATAT+CGG | 0.347951 | 1_1:-78005491 | None:intergenic |
| ACCCATTGTCTGTCCAATCT+TGG | 0.354752 | 1_1:-78002091 | None:intergenic |
| GCAAGATAGCTGAAGAAAAC+AGG | 0.355535 | 1_1:+78002966 | Msa0045990:CDS |
| TAGCAGGTTTCTCGCACCTC+TGG | 0.358138 | 1_1:-78001785 | None:intergenic |
| GGTGTTGTATGTTGAACTTT+TGG | 0.362328 | 1_1:-78001984 | None:intergenic |
| TGATACCGATATACTCATTA+AGG | 0.362914 | 1_1:+78005486 | Msa0045990:CDS |
| TTCGTTCCTCATCCCAAGAT+TGG | 0.366085 | 1_1:+78002078 | Msa0045990:CDS |
| TAGCGGTGGAAGCAATAATT+TGG | 0.367004 | 1_1:+78001322 | Msa0045990:CDS |
| GTTGAAGAACCTTGAACTTC+AGG | 0.369839 | 1_1:+78003976 | Msa0045990:CDS |
| GATTCTGAAGGCAGCAGATC+CGG | 0.369921 | 1_1:-78003351 | None:intergenic |
| AGACAAAATCGAATCCAAAA+AGG | 0.375712 | 1_1:+78000671 | Msa0045990:five_prime_UTR |
| TTTCTAGGAAAATTGATAAA+GGG | 0.382527 | 1_1:+78000638 | Msa0045990:intron |
| AGATCACATCATGAGTCATC+TGG | 0.384497 | 1_1:+78001819 | Msa0045990:CDS |
| ACACCTAATTCGCCAACTAA+TGG | 0.392084 | 1_1:+78002002 | Msa0045990:CDS |
| AGCAATTTGGGACCTTATAT+GGG | 0.400673 | 1_1:-78002567 | None:intergenic |
| TGAGCTTAAAGCGGAACGTT+TGG | 0.402269 | 1_1:+78003805 | Msa0045990:CDS |
| GAATCTGAAACCAAAATTCA+TGG | 0.403955 | 1_1:+78003484 | Msa0045990:CDS |
| TAGAAGTTTCAACCCATATA+AGG | 0.404168 | 1_1:+78002555 | Msa0045990:CDS |
| TTGGACCAGCACTTGAACTT+TGG | 0.410571 | 1_1:-78001472 | None:intergenic |
| GTCAGCATTGGAGAAGGAAT+TGG | 0.411500 | 1_1:+78002682 | Msa0045990:CDS |
| TGCCTTCATTTAGCATTGTT+AGG | 0.412345 | 1_1:-78003378 | None:intergenic |
| TCACTAGCAATGCTACTTGT+AGG | 0.415999 | 1_1:-78001557 | None:intergenic |
| ATGACATGGACGGTAATTGC+AGG | 0.416460 | 1_1:+78002339 | Msa0045990:CDS |
| ATGGACAGATTATTGGAAAT+GGG | 0.417527 | 1_1:+78003440 | Msa0045990:CDS |
| CCCATTGTCTGTCCAATCTT+GGG | 0.418832 | 1_1:-78002090 | None:intergenic |
| TCTGCATCAAGATCCTCTTC+AGG | 0.419732 | 1_1:-78002380 | None:intergenic |
| CATCAATTTGAGCATTCGTT+GGG | 0.424818 | 1_1:+78001587 | Msa0045990:CDS |
| CTTTGCCATCACCTTTCAAC+CGG | 0.428446 | 1_1:-78003285 | None:intergenic |
| TGTTTCCCTCTCACTAAAAG+AGG | 0.433329 | 1_1:-78002822 | None:intergenic |
| ATCTGTCTTGTAGTTCTAAG+AGG | 0.437045 | 1_1:-78002943 | None:intergenic |
| ATTATTGGAAATGGGTTAGC+TGG | 0.437354 | 1_1:+78003448 | Msa0045990:CDS |
| GTGCTGGTCCAAACCTTAGA+AGG | 0.438288 | 1_1:+78001483 | Msa0045990:CDS |
| AGTCAACAAATGAGCAGTCT+TGG | 0.440835 | 1_1:+78001354 | Msa0045990:CDS |
| CAGCTTGTATCTGCTCAACT+TGG | 0.443713 | 1_1:-78003868 | None:intergenic |
| TGCTCATTTGTTGACTTTGG+AGG | 0.450076 | 1_1:-78001347 | None:intergenic |
| CAGTATAAACTGCCTTCAAC+GGG | 0.453079 | 1_1:+78005303 | Msa0045990:CDS |
| CTTTAATGAGCTTGTGGCAG+CGG | 0.453579 | 1_1:+78001245 | Msa0045990:five_prime_UTR |
| AGAGGAGAGGGATAAGTTGT+GGG | 0.455210 | 1_1:+78005384 | Msa0045990:CDS |
| CAACGTTTCAAGCATGGTTG+TGG | 0.458361 | 1_1:+78001860 | Msa0045990:CDS |
| AAAATATAACTCTCTTAAAC+CGG | 0.459855 | 1_1:+78003266 | Msa0045990:CDS |
| GTTGTGGATCGTTACATTGA+TGG | 0.460187 | 1_1:+78001876 | Msa0045990:CDS |
| TTCCTCTGTGAACTGCTCCT+GGG | 0.462437 | 1_1:-78001924 | None:intergenic |
| CTGAACTTGCTACAGCAGTA+AGG | 0.462455 | 1_1:+78003888 | Msa0045990:CDS |
| CAGAGGAGAGGGATAAGTTG+TGG | 0.463545 | 1_1:+78005383 | Msa0045990:CDS |
| GTCAACAAATGAGCAGTCTT+GGG | 0.464400 | 1_1:+78001355 | Msa0045990:CDS |
| GACTCAAAATTCTAAAATGC+GGG | 0.475892 | 1_1:+78001722 | Msa0045990:CDS |
| TACACAATTAAGTTCTTCCT+TGG | 0.477781 | 1_1:-78002603 | None:intergenic |
| ATCAGTCTTGAGAAGGGAGT+TGG | 0.478290 | 1_1:+78003207 | Msa0045990:CDS |
| ACTCTTGAAGATCCCGTTGA+AGG | 0.479489 | 1_1:-78005315 | None:intergenic |
| GATTGGACAGACAATGGGTA+TGG | 0.480642 | 1_1:+78002095 | Msa0045990:CDS |
| CTGGAACTCGTTAAAGAGAA+TGG | 0.481779 | 1_1:+78003421 | Msa0045990:CDS |
| AGCAGGTTTCTCGCACCTCT+GGG | 0.484380 | 1_1:-78001784 | None:intergenic |
| TAAAGACAGAACTGGAGATT+CGG | 0.485183 | 1_1:+78002624 | Msa0045990:CDS |
| ATGGAGCTGATGAGGTTAAC+GGG | 0.488315 | 1_1:+78003178 | Msa0045990:CDS |
| CAATAATAGGATTACGAGAT+GGG | 0.492820 | 1_1:+78003089 | Msa0045990:CDS |
| GAAGCCTTTGCTCTTCTGAC+TGG | 0.492870 | 1_1:-78002745 | None:intergenic |
| GATGGAGCTGATGAGGTTAA+CGG | 0.493847 | 1_1:+78003177 | Msa0045990:CDS |
| ATCTGCTGCCTTCAGAATCA+AGG | 0.494813 | 1_1:+78003355 | Msa0045990:CDS |
| GTCACGTCATAACCATAGTC+AGG | 0.494882 | 1_1:-78002479 | None:intergenic |
| TTCTAGCAACGTTTCAAGCA+TGG | 0.495405 | 1_1:+78001854 | Msa0045990:CDS |
| AAAATTCATGGACTCAAAAG+TGG | 0.495733 | 1_1:+78003496 | Msa0045990:CDS |
| TCTCTAAATGAATGAGCCCT+AGG | 0.496289 | 1_1:-78002038 | None:intergenic |
| CAGAGGAATGGCAGTAGACA+TGG | 0.496638 | 1_1:+78001939 | Msa0045990:CDS |
| ACCTAAACTGAAAATAGCTC+AGG | 0.499917 | 1_1:-78001197 | None:intergenic |
| ATCAGGACTCCCATAGAGAC+AGG | 0.500593 | 1_1:-78005551 | None:intergenic |
| ATTCTGAAGGCAGCAGATCC+GGG | 0.503534 | 1_1:-78003350 | None:intergenic |
| CCCAAGATTGGACAGACAAT+GGG | 0.503599 | 1_1:+78002090 | Msa0045990:CDS |
| TCATCAATTTGAGCATTCGT+TGG | 0.505621 | 1_1:+78001586 | Msa0045990:CDS |
| GAATGCTCAAATTGATGATA+CGG | 0.505632 | 1_1:-78001581 | None:intergenic |
| TCTCTTCAAAATTTCTTCGA+AGG | 0.505758 | 1_1:-78002994 | None:intergenic |
| GAATGAGATGCAGTCAGCAT+TGG | 0.506765 | 1_1:+78002670 | Msa0045990:CDS |
| ATCTAGTTGGATCTTTGACC+TGG | 0.507794 | 1_1:-78001532 | None:intergenic |
| GGTGACAGACCTGAAGTTCA+AGG | 0.510941 | 1_1:-78003985 | None:intergenic |
| AAAATGAAAGGGGAGATTCT+GGG | 0.512767 | 1_1:+78002908 | Msa0045990:CDS |
| GTTGGAATCACACAAGTTTG+AGG | 0.515914 | 1_1:+78003225 | Msa0045990:CDS |
| GTCCATGTCATGATATCCAT+TGG | 0.516805 | 1_1:-78002327 | None:intergenic |
| AAAATTCTAAAATGCGGGAC+AGG | 0.517664 | 1_1:+78001727 | Msa0045990:CDS |
| TCCACCGAAAAGCTATTCAT+TGG | 0.519275 | 1_1:+78002286 | Msa0045990:CDS |
| GGGATCTTCAAGAGTCTACA+AGG | 0.525019 | 1_1:+78005323 | Msa0045990:CDS |
| TTGTGGATCGTTACATTGAT+GGG | 0.526997 | 1_1:+78001877 | Msa0045990:CDS |
| TTGTCTTTGACTCCATTAGT+TGG | 0.530813 | 1_1:-78002014 | None:intergenic |
| TGAACTTGCTACAGCAGTAA+GGG | 0.530850 | 1_1:+78003889 | Msa0045990:CDS |
| ATGGAGTCAAAGACAAACCT+AGG | 0.531447 | 1_1:+78002021 | Msa0045990:CDS |
| GATCTTGAAGAACTGCTAGC+AGG | 0.535097 | 1_1:-78001801 | None:intergenic |
| GCCAAAAGTGTCAGAGGAGA+GGG | 0.535875 | 1_1:+78005372 | Msa0045990:CDS |
| ACAGTATAAACTGCCTTCAA+CGG | 0.536730 | 1_1:+78005302 | Msa0045990:CDS |
| ATCTATGCTAGATCATTGAA+TGG | 0.537882 | 1_1:+78002236 | Msa0045990:CDS |
| ACAAAAGACCCTGTCTCTAT+GGG | 0.538740 | 1_1:+78005542 | Msa0045990:CDS |
| AGCCGAGGAGAAAATAAGCT+TGG | 0.539237 | 1_1:+78002529 | Msa0045990:CDS |
| CTCAGAGATCGAAATGCTAA+AGG | 0.540448 | 1_1:+78005447 | Msa0045990:CDS |
| TCCCAAGATTGGACAGACAA+TGG | 0.540756 | 1_1:+78002089 | Msa0045990:CDS |
| GTCTGTCCAATCTTGGGATG+AGG | 0.541344 | 1_1:-78002084 | None:intergenic |
| GTCCAAACCTTAGAAGGAGC+AGG | 0.543619 | 1_1:+78001489 | Msa0045990:CDS |
| ACAATAATAGGATTACGAGA+TGG | 0.545799 | 1_1:+78003088 | Msa0045990:CDS |
| GGCCTAACAATGCTAAATGA+AGG | 0.547042 | 1_1:+78003376 | Msa0045990:CDS |
| GCTCAAGGTGTTGACTAGTA+AGG | 0.548476 | 1_1:+78002880 | Msa0045990:CDS |
| CTACTTGTAGGAGATCTAGT+TGG | 0.551710 | 1_1:-78001545 | None:intergenic |
| AAGCTATGATGAACCTGAAG+AGG | 0.552604 | 1_1:+78002367 | Msa0045990:CDS |
| AGGACAAAGAAGTAAAAGAA+AGG | 0.553426 | 1_1:+78005704 | Msa0045990:three_prime_UTR |
| TTGACACTTTAATGAGCTTG+TGG | 0.558836 | 1_1:+78001239 | Msa0045990:five_prime_UTR |
| GATAACCAAAGTTCAAGTGC+TGG | 0.559837 | 1_1:+78001467 | Msa0045990:CDS |
| TAGTCAACACCTTGAGCTGT+TGG | 0.560938 | 1_1:-78002874 | None:intergenic |
| CATTGGAGAAGGAATTGGAC+AGG | 0.562593 | 1_1:+78002687 | Msa0045990:CDS |
| GGACTCAAAAGTGGAACTGA+GGG | 0.563611 | 1_1:+78003505 | Msa0045990:CDS |
| ACTCTCTTAAACCGGTTGAA+AGG | 0.563780 | 1_1:+78003274 | Msa0045990:CDS |
| TATCAATGCTCTCAACAGAA+TGG | 0.565104 | 1_1:-78003135 | None:intergenic |
| TCAAATATCAATGTTGCAAG+AGG | 0.565983 | 1_1:+78005513 | Msa0045990:CDS |
| TAATTGTGTAAAGACAGAAC+TGG | 0.566498 | 1_1:+78002616 | Msa0045990:CDS |
| TTAAACCGGTTGAAAGGTGA+TGG | 0.567877 | 1_1:+78003280 | Msa0045990:CDS |
| GAATAGAATCAGTCTTGAGA+AGG | 0.568371 | 1_1:+78003200 | Msa0045990:CDS |
| ACTCGTGAGACGCAGTTGAA+AGG | 0.568903 | 1_1:-78003955 | None:intergenic |
| TTTAACAATTGAGCTTAAAG+CGG | 0.569523 | 1_1:+78003796 | Msa0045990:CDS |
| AGGAGCAGTTCACAGAGGAA+TGG | 0.571707 | 1_1:+78001927 | Msa0045990:CDS |
| GAAAGTGAAACAAATTAGTG+AGG | 0.572556 | 1_1:+78005408 | Msa0045990:CDS |
| AGTTGGATCTTTGACCTGGA+AGG | 0.573525 | 1_1:-78001528 | None:intergenic |
| AAATGCAGATGGAGCTGATG+AGG | 0.574329 | 1_1:+78003170 | Msa0045990:CDS |
| AGAATTAATGAGAAGATCAA+AGG | 0.574358 | 1_1:+78002400 | Msa0045990:CDS |
| GATCACATCATGAGTCATCT+GGG | 0.574946 | 1_1:+78001820 | Msa0045990:CDS |
| TGGACAGGAGGTCAAGTGAC+TGG | 0.574983 | 1_1:+78002702 | Msa0045990:CDS |
| TCATGGCAAAAGTGAGGACA+AGG | 0.575944 | 1_1:+78001412 | Msa0045990:CDS |
| GCACATCAAGAAAATGCAGA+TGG | 0.576565 | 1_1:+78003159 | Msa0045990:CDS |
| AAGGAGCAGGTCAATGTCCT+CGG | 0.578720 | 1_1:+78001502 | Msa0045990:CDS |
| TTCAGATCGTCTGCATCTAG+CGG | 0.579431 | 1_1:+78001305 | Msa0045990:CDS |
| GGAGTGAATAATCAAGCTCA+TGG | 0.581614 | 1_1:+78001395 | Msa0045990:CDS |
| TAGACAAAGAACTATGCGCC+CGG | 0.586346 | 1_1:+78003332 | Msa0045990:CDS |
| ACATACTGACCAACAGCTCA+AGG | 0.587070 | 1_1:+78002865 | Msa0045990:CDS |
| TTGTTAGGCCTTGATTCTGA+AGG | 0.590931 | 1_1:-78003363 | None:intergenic |
| TGACATGGACGGTAATTGCA+GGG | 0.591350 | 1_1:+78002340 | Msa0045990:CDS |
| GAGAAGATCAAAGGAAGCTG+AGG | 0.593539 | 1_1:+78002409 | Msa0045990:CDS |
| TGCTGACAGAGCATCTGCCA+AGG | 0.599459 | 1_1:+78002586 | Msa0045990:CDS |
| ATTGAATAATCAATCGTCAG+AGG | 0.599707 | 1_1:+78003612 | Msa0045990:CDS |
| CACTCATATATGTGAATGAG+TGG | 0.600849 | 1_1:+78005618 | Msa0045990:three_prime_UTR |
| ATGATTAATTTGAACGAACG+AGG | 0.601596 | 1_1:-78000249 | None:intergenic |
| CAAGGGAGTTATCAATCATG+AGG | 0.603485 | 1_1:+78005341 | Msa0045990:CDS |
| GCAGACACTGCAGATTGTGT+TGG | 0.604333 | 1_1:-78001750 | None:intergenic |
| TTTGGTGGAAGATTCATGCA+AGG | 0.605034 | 1_1:-78001966 | None:intergenic |
| ATTGGACAGACAATGGGTAT+GGG | 0.606897 | 1_1:+78002096 | Msa0045990:CDS |
| AGTACCAGTCAGAAGAGCAA+AGG | 0.608026 | 1_1:+78002741 | Msa0045990:CDS |
| GAACCTTATAGAATGTCCAA+TGG | 0.608161 | 1_1:+78002311 | Msa0045990:CDS |
| GATGCAGTCAGCATTGGAGA+AGG | 0.610943 | 1_1:+78002676 | Msa0045990:CDS |
| TGCCAAAAGTGTCAGAGGAG+AGG | 0.611276 | 1_1:+78005371 | Msa0045990:CDS |
| AGACTCAAAATTCTAAAATG+CGG | 0.612562 | 1_1:+78001721 | Msa0045990:CDS |
| AACAAATGAGCAGTCTTGGG+AGG | 0.617471 | 1_1:+78001358 | Msa0045990:CDS |
| AAGGGAGTTATCAATCATGA+GGG | 0.619066 | 1_1:+78005342 | Msa0045990:CDS |
| CAAGATAGCTGAAGAAAACA+GGG | 0.623458 | 1_1:+78002967 | Msa0045990:CDS |
| ACCGATATACTCATTAAGGA+AGG | 0.625725 | 1_1:+78005490 | Msa0045990:CDS |
| AATGTTGCCAAAAGTGTCAG+AGG | 0.626739 | 1_1:+78005366 | Msa0045990:CDS |
| GTGGAACTGAGGGGTTAACA+AGG | 0.632898 | 1_1:+78003515 | Msa0045990:CDS |
| ATCAATTTGAGCATTCGTTG+GGG | 0.633663 | 1_1:+78001588 | Msa0045990:CDS |
| AGATCGTCTGCATCTAGCGG+TGG | 0.633712 | 1_1:+78001308 | Msa0045990:CDS |
| AATAGAATCAGTCTTGAGAA+GGG | 0.635360 | 1_1:+78003201 | Msa0045990:CDS |
| TGGACTCAAAAGTGGAACTG+AGG | 0.641479 | 1_1:+78003504 | Msa0045990:CDS |
| GACATGGACGGTAATTGCAG+GGG | 0.642445 | 1_1:+78002341 | Msa0045990:CDS |
| AGCTAGAGGAAAGTAGACCC+AGG | 0.644071 | 1_1:+78001907 | Msa0045990:CDS |
| TGGAGTCAAAGACAAACCTA+GGG | 0.644740 | 1_1:+78002022 | Msa0045990:CDS |
| AAATGACATACTTAGATCTG+AGG | 0.646044 | 1_1:+78003913 | Msa0045990:CDS |
| CTTGGGATGAGGAACGAAGA+CGG | 0.646326 | 1_1:-78002073 | None:intergenic |
| GAACTTGCTACAGCAGTAAG+GGG | 0.648518 | 1_1:+78003890 | Msa0045990:CDS |
| AATGGATATCATGACATGGA+CGG | 0.648578 | 1_1:+78002329 | Msa0045990:CDS |
| TGATGGGGAACAACAGCTAG+AGG | 0.652052 | 1_1:+78001893 | Msa0045990:CDS |
| GGAATCACACAAGTTTGAGG+AGG | 0.656353 | 1_1:+78003228 | Msa0045990:CDS |
| TCAAGCTCATGGCAAAAGTG+AGG | 0.660201 | 1_1:+78001406 | Msa0045990:CDS |
| TGGAGAAGGAATTGGACAGG+AGG | 0.660839 | 1_1:+78002690 | Msa0045990:CDS |
| GTCCAATGGATATCATGACA+TGG | 0.663635 | 1_1:+78002325 | Msa0045990:CDS |
| TTTGACCTGGAAGGAAGCCG+AGG | 0.670204 | 1_1:-78001519 | None:intergenic |
| TGATTAATTTGAACGAACGA+GGG | 0.676427 | 1_1:-78000248 | None:intergenic |
| GACAATCAGAAACCTAGCCG+AGG | 0.679751 | 1_1:+78002514 | Msa0045990:CDS |
| TGTGGATCGTTACATTGATG+GGG | 0.681982 | 1_1:+78001878 | Msa0045990:CDS |
| GACCCAGGAGCAGTTCACAG+AGG | 0.686900 | 1_1:+78001922 | Msa0045990:CDS |
| TCAGGACTCCCATAGAGACA+GGG | 0.708382 | 1_1:-78005550 | None:intergenic |
| GACTCAAAAGTGGAACTGAG+GGG | 0.714232 | 1_1:+78003506 | Msa0045990:CDS |
| AGGGAGTTATCAATCATGAG+GGG | 0.716877 | 1_1:+78005343 | Msa0045990:CDS |
| GGATCTTCAAGAGTCTACAA+GGG | 0.733654 | 1_1:+78005324 | Msa0045990:CDS |
| CATGGCAAAAGTGAGGACAA+GGG | 0.735030 | 1_1:+78001413 | Msa0045990:CDS |
| CTGCTGTCCAAAATTCCCAG+AGG | 0.735905 | 1_1:+78001769 | Msa0045990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTCTTTATTTTTTTTGA+AGG | - | chr1_1:78000801-78000820 | None:intergenic | 10.0% |
| !! | TTCAAAAAAAATAAAGAAAT+TGG | + | chr1_1:78000800-78000819 | Msa0045990:intron | 10.0% |
| !!! | ATTTCATTAAAATTCTAAAA+GGG | - | chr1_1:78000882-78000901 | None:intergenic | 10.0% |
| !! | TATTTCATTAAAATTCTAAA+AGG | - | chr1_1:78000883-78000902 | None:intergenic | 10.0% |
| !!! | ATAATAATGATTTTAAAGAA+AGG | - | chr1_1:78003720-78003739 | None:intergenic | 10.0% |
| !! | ACTACAAAAAATAAAATTAT+GGG | - | chr1_1:78005032-78005051 | None:intergenic | 10.0% |
| !! | AACTACAAAAAATAAAATTA+TGG | - | chr1_1:78005033-78005052 | None:intergenic | 10.0% |
| !! | CAAAAATTGAAATTGAAAAA+TGG | - | chr1_1:78000353-78000372 | None:intergenic | 15.0% |
| !!! | ATTGTCTTAACTATAAATTT+TGG | + | chr1_1:78000823-78000842 | Msa0045990:intron | 15.0% |
| !!! | TTGTCTTAACTATAAATTTT+GGG | + | chr1_1:78000824-78000843 | Msa0045990:intron | 15.0% |
| !!! | TTTCTTTAATTGAATTTTAG+AGG | + | chr1_1:78003654-78003673 | Msa0045990:intron | 15.0% |
| !! | ATAATCAATAAATTCAATGT+TGG | - | chr1_1:78004009-78004028 | None:intergenic | 15.0% |
| !! | AAAAAATAAAATTATGGGAT+TGG | - | chr1_1:78005027-78005046 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTAGTTTAATTTC+TGG | + | chr1_1:78005040-78005059 | Msa0045990:intron | 15.0% |
| !!! | GATTAGTCTAAGAATAAAAA+AGG | - | chr1_1:78000428-78000447 | None:intergenic | 20.0% |
| !!! | TTTTCTAGGAAAATTGATAA+AGG | + | chr1_1:78000637-78000656 | Msa0045990:intron | 20.0% |
| !!! | TTTCTAGGAAAATTGATAAA+GGG | + | chr1_1:78000638-78000657 | Msa0045990:intron | 20.0% |
| !! | CTAAATTACATATGAAAACA+TGG | - | chr1_1:78000723-78000742 | None:intergenic | 20.0% |
| !! | TAACACAGAAGAAAAAAAAA+GGG | - | chr1_1:78000752-78000771 | None:intergenic | 20.0% |
| !! | TTAACACAGAAGAAAAAAAA+AGG | - | chr1_1:78000753-78000772 | None:intergenic | 20.0% |
| !! | TTAATCAGTTAGAAAGAAAT+TGG | + | chr1_1:78000769-78000788 | Msa0045990:intron | 20.0% |
| !!! | TGTCTTAACTATAAATTTTG+GGG | + | chr1_1:78000825-78000844 | Msa0045990:intron | 20.0% |
| !!! | CATTTTGCACATATTAATTT+TGG | + | chr1_1:78001666-78001685 | Msa0045990:intron | 20.0% |
| !!! | AAACTTGTGATATTTCTAAA+AGG | + | chr1_1:78002168-78002187 | Msa0045990:CDS | 20.0% |
| !! | TATTCTTCTTTCAAAGAAAT+TGG | + | chr1_1:78002439-78002458 | Msa0045990:CDS | 20.0% |
| !!! | TTAAGAGAGTTATATTTTCT+TGG | - | chr1_1:78003264-78003283 | None:intergenic | 20.0% |
| !! | AAAATATAACTCTCTTAAAC+CGG | + | chr1_1:78003266-78003285 | Msa0045990:CDS | 20.0% |
| !! | AGTAACAAAAGTTTGAATAT+GGG | - | chr1_1:78004373-78004392 | None:intergenic | 20.0% |
| !!! | TCAATTTCATTTAAGATTGT+TGG | + | chr1_1:78004571-78004590 | Msa0045990:intron | 20.0% |
| !!! | ATTATGTTTTAGTGTTCTTT+AGG | - | chr1_1:78004654-78004673 | None:intergenic | 20.0% |
| !!! | CCTAACATTAACTTTAATTT+AGG | - | chr1_1:78004721-78004740 | None:intergenic | 20.0% |
| !! | CCTAAATTAAAGTTAATGTT+AGG | + | chr1_1:78004718-78004737 | Msa0045990:intron | 20.0% |
| !!! | AGTTTATTGACTCATATAAA+AGG | - | chr1_1:78004786-78004805 | None:intergenic | 20.0% |
| !! | GATAATCTATGATCATTATT+TGG | - | chr1_1:78004827-78004846 | None:intergenic | 20.0% |
| !!! | TTTTTATTAGTTGTCTTTGT+GGG | + | chr1_1:78005201-78005220 | Msa0045990:intron | 20.0% |
| !! | TATGTGAAAAAAATTGTATC+AGG | - | chr1_1:78005571-78005590 | None:intergenic | 20.0% |
| !!! | TGATACAATTTTTTTCACAT+AGG | + | chr1_1:78005570-78005589 | Msa0045990:CDS | 20.0% |
| !!! | TTAGATTTTGTTTTTAGAGT+TGG | + | chr1_1:78005657-78005676 | Msa0045990:three_prime_UTR | 20.0% |
| ! | AATTCATATCTCTCTCTTTA+TGG | + | chr1_1:78000300-78000319 | Msa0045990:five_prime_UTR | 25.0% |
| ! | AGAATAAAAAAGGAAGAGAA+AGG | - | chr1_1:78000418-78000437 | None:intergenic | 25.0% |
| !! | TTTGACCATTTTCTTTTTCT+TGG | + | chr1_1:78000602-78000621 | Msa0045990:intron | 25.0% |
| !! | CAAGAAAAATGTTACCTTTT+TGG | - | chr1_1:78000688-78000707 | None:intergenic | 25.0% |
| ! | TATGAAAACATGGAATCAAA+GGG | - | chr1_1:78000713-78000732 | None:intergenic | 25.0% |
| ! | ATATGAAAACATGGAATCAA+AGG | - | chr1_1:78000714-78000733 | None:intergenic | 25.0% |
| ! | AACACAGAAGAAAAAAAAAG+GGG | - | chr1_1:78000751-78000770 | None:intergenic | 25.0% |
| ! | ATCTATGAGTAAAATGAACA+TGG | - | chr1_1:78000968-78000987 | None:intergenic | 25.0% |
| ! | AACAAGTGCAATGAATAAAA+AGG | - | chr1_1:78001019-78001038 | None:intergenic | 25.0% |
| ! | AAAAACCATCAAGACAAAAT+AGG | - | chr1_1:78001145-78001164 | None:intergenic | 25.0% |
| !!! | TTTGTTTTCTTTTCTGTCAT+AGG | + | chr1_1:78001164-78001183 | Msa0045990:intron | 25.0% |
| !!! | TTAAAGTGTCAAGATTTTGA+AGG | - | chr1_1:78001231-78001250 | None:intergenic | 25.0% |
| ! | CAGTTTCAAAGTTAGATTAT+CGG | - | chr1_1:78001620-78001639 | None:intergenic | 25.0% |
| ! | TGCAAAATGTAACTAATACA+AGG | - | chr1_1:78001655-78001674 | None:intergenic | 25.0% |
| !!! | AGACTCAAAATTCTAAAATG+CGG | + | chr1_1:78001721-78001740 | Msa0045990:CDS | 25.0% |
| ! | AGAATTAATGAGAAGATCAA+AGG | + | chr1_1:78002400-78002419 | Msa0045990:CDS | 25.0% |
| ! | TTTAACAATTGAGCTTAAAG+CGG | + | chr1_1:78003796-78003815 | Msa0045990:CDS | 25.0% |
| !! | TTCCTATAAAAGTGCATATA+TGG | + | chr1_1:78004070-78004089 | Msa0045990:intron | 25.0% |
| !! | TCCTATAAAAGTGCATATAT+GGG | + | chr1_1:78004071-78004090 | Msa0045990:intron | 25.0% |
| ! | TAGTATTTAAGTGCGAAAAT+GGG | - | chr1_1:78004306-78004325 | None:intergenic | 25.0% |
| ! | TTAGTATTTAAGTGCGAAAA+TGG | - | chr1_1:78004307-78004326 | None:intergenic | 25.0% |
| ! | TTTGAATATGGGTGAAAAAA+TGG | - | chr1_1:78004362-78004381 | None:intergenic | 25.0% |
| ! | CAGTAACAAAAGTTTGAATA+TGG | - | chr1_1:78004374-78004393 | None:intergenic | 25.0% |
| !!! | CTTATGTCCTATTTTTTTCA+AGG | + | chr1_1:78004444-78004463 | Msa0045990:intron | 25.0% |
| ! | CATCATTCCTTGAAAAAAAT+AGG | - | chr1_1:78004454-78004473 | None:intergenic | 25.0% |
| ! | TTAGAATCTATGATGAGTAT+TGG | - | chr1_1:78004485-78004504 | None:intergenic | 25.0% |
| !!! | TAGTCGATCATTTTGTTTAT+TGG | - | chr1_1:78004548-78004567 | None:intergenic | 25.0% |
| !! | TTGTGATATGATTTAGAACT+AGG | + | chr1_1:78004757-78004776 | Msa0045990:intron | 25.0% |
| ! | TATATGAGTCAATAAACTAC+TGG | + | chr1_1:78004788-78004807 | Msa0045990:intron | 25.0% |
| ! | GATCATTATTTGGTTATATC+TGG | - | chr1_1:78004817-78004836 | None:intergenic | 25.0% |
| ! | ATTTGATCATAGAGATTATC+CGG | - | chr1_1:78004980-78004999 | None:intergenic | 25.0% |
| ! | AAATAAAATTATGGGATTGG+TGG | - | chr1_1:78005024-78005043 | None:intergenic | 25.0% |
| !! | GTTTTTATTAGTTGTCTTTG+TGG | + | chr1_1:78005200-78005219 | Msa0045990:intron | 25.0% |
| !! | TTTTATTAGTTGTCTTTGTG+GGG | + | chr1_1:78005202-78005221 | Msa0045990:intron | 25.0% |
| ! | TGATTAATTTGAACGAACGA+GGG | - | chr1_1:78000251-78000270 | None:intergenic | 30.0% |
| ! | ATGATTAATTTGAACGAACG+AGG | - | chr1_1:78000252-78000271 | None:intergenic | 30.0% |
| CAAGTCCAAGAAAAAGAAAA+TGG | - | chr1_1:78000610-78000629 | None:intergenic | 30.0% | |
| !! | GGACTTGTTTATTGTTTTCT+AGG | + | chr1_1:78000623-78000642 | Msa0045990:intron | 30.0% |
| AGACAAAATCGAATCCAAAA+AGG | + | chr1_1:78000671-78000690 | Msa0045990:five_prime_UTR | 30.0% | |
| GAATAATCTTAGGCATAACA+TGG | + | chr1_1:78000993-78001012 | Msa0045990:intron | 30.0% | |
| ! | GTAATCCTATTTTGTCTTGA+TGG | + | chr1_1:78001137-78001156 | Msa0045990:intron | 30.0% |
| ! | TTTCTTTTCTGTCATAGGTT+TGG | + | chr1_1:78001169-78001188 | Msa0045990:intron | 30.0% |
| !! | TCAAGATTTTGAAGGATTGA+AGG | - | chr1_1:78001223-78001242 | None:intergenic | 30.0% |
| GAAAAAGAATAGCTTCTTCA+TGG | - | chr1_1:78001288-78001307 | None:intergenic | 30.0% | |
| ! | GAATGCTCAAATTGATGATA+CGG | - | chr1_1:78001584-78001603 | None:intergenic | 30.0% |
| !!! | GCATTTTAGAATTTTGAGTC+TGG | - | chr1_1:78001722-78001741 | None:intergenic | 30.0% |
| !! | GACTCAAAATTCTAAAATGC+GGG | + | chr1_1:78001722-78001741 | Msa0045990:CDS | 30.0% |
| !!! | ACATTTTTTGCAAGAGTTCT+TGG | - | chr1_1:78002131-78002150 | None:intergenic | 30.0% |
| TTGCAAAAAATGTCATTGAG+AGG | + | chr1_1:78002138-78002157 | Msa0045990:CDS | 30.0% | |
| TAGATATCTTCGATTGTGAT+TGG | - | chr1_1:78002221-78002240 | None:intergenic | 30.0% | |
| ATCTATGCTAGATCATTGAA+TGG | + | chr1_1:78002236-78002255 | Msa0045990:CDS | 30.0% | |
| ! | TCTTCCAATGAATAGCTTTT+CGG | - | chr1_1:78002293-78002312 | None:intergenic | 30.0% |
| TATCCATTGGACATTCTATA+AGG | - | chr1_1:78002317-78002336 | None:intergenic | 30.0% | |
| !!! | GAAAACTTTTTTCCTGACTA+TGG | + | chr1_1:78002467-78002486 | Msa0045990:CDS | 30.0% |
| TAGAAGTTTCAACCCATATA+AGG | + | chr1_1:78002555-78002574 | Msa0045990:CDS | 30.0% | |
| TACACAATTAAGTTCTTCCT+TGG | - | chr1_1:78002606-78002625 | None:intergenic | 30.0% | |
| TAATTGTGTAAAGACAGAAC+TGG | + | chr1_1:78002616-78002635 | Msa0045990:CDS | 30.0% | |
| AGTAAGGCAGAAAAAATGAA+AGG | + | chr1_1:78002896-78002915 | Msa0045990:CDS | 30.0% | |
| GTAAGGCAGAAAAAATGAAA+GGG | + | chr1_1:78002897-78002916 | Msa0045990:CDS | 30.0% | |
| TAAGGCAGAAAAAATGAAAG+GGG | + | chr1_1:78002898-78002917 | Msa0045990:CDS | 30.0% | |
| TCTCTTCAAAATTTCTTCGA+AGG | - | chr1_1:78002997-78003016 | None:intergenic | 30.0% | |
| !! | TCGAAGAAATTTTGAAGAGA+AGG | + | chr1_1:78002997-78003016 | Msa0045990:CDS | 30.0% |
| !! | AAATTTTGAAGAGAAGGAGA+AGG | + | chr1_1:78003003-78003022 | Msa0045990:CDS | 30.0% |
| ACAATAATAGGATTACGAGA+TGG | + | chr1_1:78003088-78003107 | Msa0045990:CDS | 30.0% | |
| CAATAATAGGATTACGAGAT+GGG | + | chr1_1:78003089-78003108 | Msa0045990:CDS | 30.0% | |
| CAACAGAATGGTTCTTATTA+AGG | - | chr1_1:78003126-78003145 | None:intergenic | 30.0% | |
| AATAGAATCAGTCTTGAGAA+GGG | + | chr1_1:78003201-78003220 | Msa0045990:CDS | 30.0% | |
| ATACTTGTGTTCAAAGTTAC+TGG | + | chr1_1:78003402-78003421 | Msa0045990:CDS | 30.0% | |
| AAAGAGAATGGACAGATTAT+TGG | + | chr1_1:78003433-78003452 | Msa0045990:CDS | 30.0% | |
| AATGGACAGATTATTGGAAA+TGG | + | chr1_1:78003439-78003458 | Msa0045990:CDS | 30.0% | |
| ATGGACAGATTATTGGAAAT+GGG | + | chr1_1:78003440-78003459 | Msa0045990:CDS | 30.0% | |
| ! | GAATCTGAAACCAAAATTCA+TGG | + | chr1_1:78003484-78003503 | Msa0045990:CDS | 30.0% |
| !! | ACTTTTGAGTCCATGAATTT+TGG | - | chr1_1:78003497-78003516 | None:intergenic | 30.0% |
| AAAATTCATGGACTCAAAAG+TGG | + | chr1_1:78003496-78003515 | Msa0045990:CDS | 30.0% | |
| ! | GACTTTTCTTTCAACAAAGA+AGG | - | chr1_1:78003556-78003575 | None:intergenic | 30.0% |
| ATTGAATAATCAATCGTCAG+AGG | + | chr1_1:78003612-78003631 | Msa0045990:CDS | 30.0% | |
| AAATGACATACTTAGATCTG+AGG | + | chr1_1:78003913-78003932 | Msa0045990:CDS | 30.0% | |
| ! | TATCCTTTTCTAACAATGCA+CGG | - | chr1_1:78004048-78004067 | None:intergenic | 30.0% |
| ! | ACCCATATATGCACTTTTAT+AGG | - | chr1_1:78004075-78004094 | None:intergenic | 30.0% |
| ! | ATAAAAGTGCATATATGGGT+AGG | + | chr1_1:78004075-78004094 | Msa0045990:intron | 30.0% |
| TTCATATATACCGAGACTTA+TGG | - | chr1_1:78004123-78004142 | None:intergenic | 30.0% | |
| AACACTAAAACATAATGCCA+CGG | + | chr1_1:78004658-78004677 | Msa0045990:intron | 30.0% | |
| ! | ACTTTAATTTAGGCCTCTAT+GGG | - | chr1_1:78004711-78004730 | None:intergenic | 30.0% |
| ! | AACTTTAATTTAGGCCTCTA+TGG | - | chr1_1:78004712-78004731 | None:intergenic | 30.0% |
| TTTGATCATAGAGATTATCC+GGG | - | chr1_1:78004979-78004998 | None:intergenic | 30.0% | |
| TTTGTCGAATCTCTATGATA+TGG | - | chr1_1:78005102-78005121 | None:intergenic | 30.0% | |
| !!! | GATTCGACAAAGTTTTAAGT+TGG | + | chr1_1:78005111-78005130 | Msa0045990:intron | 30.0% |
| GAAAGTGAAACAAATTAGTG+AGG | + | chr1_1:78005408-78005427 | Msa0045990:CDS | 30.0% | |
| TGATACCGATATACTCATTA+AGG | + | chr1_1:78005486-78005505 | Msa0045990:CDS | 30.0% | |
| ACCTTCCTTAATGAGTATAT+CGG | - | chr1_1:78005494-78005513 | None:intergenic | 30.0% | |
| TCAAATATCAATGTTGCAAG+AGG | + | chr1_1:78005513-78005532 | Msa0045990:CDS | 30.0% | |
| ! | CTTTTCATAATCTGTTTCAC+AGG | + | chr1_1:78005684-78005703 | Msa0045990:three_prime_UTR | 30.0% |
| AGGACAAAGAAGTAAAAGAA+AGG | + | chr1_1:78005704-78005723 | Msa0045990:three_prime_UTR | 30.0% | |
| ! | GTGACTCACAAGCATTTTAA+CGG | - | chr1_1:78000534-78000553 | None:intergenic | 35.0% |
| TAGATGCTGCGAATAATCTT+AGG | + | chr1_1:78000983-78001002 | Msa0045990:intron | 35.0% | |
| GATTACACAAACAAGCACAA+TGG | - | chr1_1:78001123-78001142 | None:intergenic | 35.0% | |
| !! | ACCTGAGCTATTTTCAGTTT+AGG | + | chr1_1:78001196-78001215 | Msa0045990:five_prime_UTR | 35.0% |
| ACCTAAACTGAAAATAGCTC+AGG | - | chr1_1:78001200-78001219 | None:intergenic | 35.0% | |
| TTGACACTTTAATGAGCTTG+TGG | + | chr1_1:78001239-78001258 | Msa0045990:five_prime_UTR | 35.0% | |
| ! | AGCAACTTGCTTTCTAGATT+TGG | - | chr1_1:78001447-78001466 | None:intergenic | 35.0% |
| TCATCAATTTGAGCATTCGT+TGG | + | chr1_1:78001586-78001605 | Msa0045990:CDS | 35.0% | |
| CATCAATTTGAGCATTCGTT+GGG | + | chr1_1:78001587-78001606 | Msa0045990:CDS | 35.0% | |
| ATCAATTTGAGCATTCGTTG+GGG | + | chr1_1:78001588-78001607 | Msa0045990:CDS | 35.0% | |
| !!! | AATTTTGGCTGTACTTTCTG+TGG | + | chr1_1:78001681-78001700 | Msa0045990:intron | 35.0% |
| !! | AAAATTCTAAAATGCGGGAC+AGG | + | chr1_1:78001727-78001746 | Msa0045990:CDS | 35.0% |
| TTGTGGATCGTTACATTGAT+GGG | + | chr1_1:78001877-78001896 | Msa0045990:CDS | 35.0% | |
| ! | GTTGTATGTTGAACTTTTGG+TGG | - | chr1_1:78001984-78002003 | None:intergenic | 35.0% |
| !! | GGTGTTGTATGTTGAACTTT+TGG | - | chr1_1:78001987-78002006 | None:intergenic | 35.0% |
| TTGTCTTTGACTCCATTAGT+TGG | - | chr1_1:78002017-78002036 | None:intergenic | 35.0% | |
| GAACCTTATAGAATGTCCAA+TGG | + | chr1_1:78002311-78002330 | Msa0045990:CDS | 35.0% | |
| AATGGATATCATGACATGGA+CGG | + | chr1_1:78002329-78002348 | Msa0045990:CDS | 35.0% | |
| ! | AGCAATTTGGGACCTTATAT+GGG | - | chr1_1:78002570-78002589 | None:intergenic | 35.0% |
| TAAAGACAGAACTGGAGATT+CGG | + | chr1_1:78002624-78002643 | Msa0045990:CDS | 35.0% | |
| ! | AAGTTTCCTCTTTTAGTGAG+AGG | + | chr1_1:78002816-78002835 | Msa0045990:CDS | 35.0% |
| ! | AGTTTCCTCTTTTAGTGAGA+GGG | + | chr1_1:78002817-78002836 | Msa0045990:CDS | 35.0% |
| AAAAATGAAAGGGGAGATTC+TGG | + | chr1_1:78002907-78002926 | Msa0045990:CDS | 35.0% | |
| AAAATGAAAGGGGAGATTCT+GGG | + | chr1_1:78002908-78002927 | Msa0045990:CDS | 35.0% | |
| !! | ATCTGTCTTGTAGTTCTAAG+AGG | - | chr1_1:78002946-78002965 | None:intergenic | 35.0% |
| CAAGATAGCTGAAGAAAACA+GGG | + | chr1_1:78002967-78002986 | Msa0045990:CDS | 35.0% | |
| GAGCAAGAGAAGACAATAAT+AGG | + | chr1_1:78003076-78003095 | Msa0045990:CDS | 35.0% | |
| TATCAATGCTCTCAACAGAA+TGG | - | chr1_1:78003138-78003157 | None:intergenic | 35.0% | |
| GAATAGAATCAGTCTTGAGA+AGG | + | chr1_1:78003200-78003219 | Msa0045990:CDS | 35.0% | |
| TGCCTTCATTTAGCATTGTT+AGG | - | chr1_1:78003381-78003400 | None:intergenic | 35.0% | |
| !! | ATTATTGGAAATGGGTTAGC+TGG | + | chr1_1:78003448-78003467 | Msa0045990:CDS | 35.0% |
| !! | CATCATGCTGTTTCTTGTAT+AGG | + | chr1_1:78003769-78003788 | Msa0045990:intron | 35.0% |
| TTTCTAACAATGCACGGAAT+AGG | - | chr1_1:78004042-78004061 | None:intergenic | 35.0% | |
| ATTCCGTGCATTGTTAGAAA+AGG | + | chr1_1:78004042-78004061 | Msa0045990:intron | 35.0% | |
| AGTGAATTTCAATGATCTGC+TGG | - | chr1_1:78004175-78004194 | None:intergenic | 35.0% | |
| TAAACTATATAACCAGCAGC+AGG | + | chr1_1:78004195-78004214 | Msa0045990:intron | 35.0% | |
| TAAGTGCGAAAATGGGAATT+AGG | - | chr1_1:78004299-78004318 | None:intergenic | 35.0% | |
| GTCGTGAAATTAAAGTAGGT+TGG | - | chr1_1:78004602-78004621 | None:intergenic | 35.0% | |
| ACACTAAAACATAATGCCAC+GGG | + | chr1_1:78004659-78004678 | Msa0045990:intron | 35.0% | |
| !! | GGTTTCTTGTGCTTTTTACA+CGG | - | chr1_1:78004931-78004950 | None:intergenic | 35.0% |
| TTTCGTTCATATAGGATTGG+TGG | - | chr1_1:78004952-78004971 | None:intergenic | 35.0% | |
| ACCAATCCTATATGAACGAA+AGG | + | chr1_1:78004951-78004970 | Msa0045990:intron | 35.0% | |
| ACCTTTCGTTCATATAGGAT+TGG | - | chr1_1:78004955-78004974 | None:intergenic | 35.0% | |
| ACAGTATAAACTGCCTTCAA+CGG | + | chr1_1:78005302-78005321 | Msa0045990:CDS | 35.0% | |
| AAGGGAGTTATCAATCATGA+GGG | + | chr1_1:78005342-78005361 | Msa0045990:CDS | 35.0% | |
| ACCGATATACTCATTAAGGA+AGG | + | chr1_1:78005490-78005509 | Msa0045990:CDS | 35.0% | |
| CACTCATATATGTGAATGAG+TGG | + | chr1_1:78005618-78005637 | Msa0045990:three_prime_UTR | 35.0% | |
| ! | AATCTCTCGCTAGCTTCAAT+TGG | + | chr1_1:78000570-78000589 | Msa0045990:intron | 40.0% |
| TTCTCTGATGTAGTAGCTTG+TGG | + | chr1_1:78000931-78000950 | Msa0045990:intron | 40.0% | |
| TAGCGGTGGAAGCAATAATT+TGG | + | chr1_1:78001322-78001341 | Msa0045990:CDS | 40.0% | |
| !! | TGCTCATTTGTTGACTTTGG+AGG | - | chr1_1:78001350-78001369 | None:intergenic | 40.0% |
| !! | GACTGCTCATTTGTTGACTT+TGG | - | chr1_1:78001353-78001372 | None:intergenic | 40.0% |
| AGTCAACAAATGAGCAGTCT+TGG | + | chr1_1:78001354-78001373 | Msa0045990:CDS | 40.0% | |
| GTCAACAAATGAGCAGTCTT+GGG | + | chr1_1:78001355-78001374 | Msa0045990:CDS | 40.0% | |
| !!! | TGGGAGGTTTTTTCAGATAG+TGG | + | chr1_1:78001374-78001393 | Msa0045990:CDS | 40.0% |
| GGAGTGAATAATCAAGCTCA+TGG | + | chr1_1:78001395-78001414 | Msa0045990:CDS | 40.0% | |
| GATAACCAAAGTTCAAGTGC+TGG | + | chr1_1:78001467-78001486 | Msa0045990:CDS | 40.0% | |
| ATCTAGTTGGATCTTTGACC+TGG | - | chr1_1:78001535-78001554 | None:intergenic | 40.0% | |
| CTACTTGTAGGAGATCTAGT+TGG | - | chr1_1:78001548-78001567 | None:intergenic | 40.0% | |
| ! | TCACTAGCAATGCTACTTGT+AGG | - | chr1_1:78001560-78001579 | None:intergenic | 40.0% |
| AGATCACATCATGAGTCATC+TGG | + | chr1_1:78001819-78001838 | Msa0045990:CDS | 40.0% | |
| GATCACATCATGAGTCATCT+GGG | + | chr1_1:78001820-78001839 | Msa0045990:CDS | 40.0% | |
| TTCTAGCAACGTTTCAAGCA+TGG | + | chr1_1:78001854-78001873 | Msa0045990:CDS | 40.0% | |
| GTTGTGGATCGTTACATTGA+TGG | + | chr1_1:78001876-78001895 | Msa0045990:CDS | 40.0% | |
| TGTGGATCGTTACATTGATG+GGG | + | chr1_1:78001878-78001897 | Msa0045990:CDS | 40.0% | |
| TTTGGTGGAAGATTCATGCA+AGG | - | chr1_1:78001969-78001988 | None:intergenic | 40.0% | |
| ACACCTAATTCGCCAACTAA+TGG | + | chr1_1:78002002-78002021 | Msa0045990:CDS | 40.0% | |
| ACTCCATTAGTTGGCGAATT+AGG | - | chr1_1:78002008-78002027 | None:intergenic | 40.0% | |
| ATGGAGTCAAAGACAAACCT+AGG | + | chr1_1:78002021-78002040 | Msa0045990:CDS | 40.0% | |
| TGGAGTCAAAGACAAACCTA+GGG | + | chr1_1:78002022-78002041 | Msa0045990:CDS | 40.0% | |
| TCTCTAAATGAATGAGCCCT+AGG | - | chr1_1:78002041-78002060 | None:intergenic | 40.0% | |
| ATTGGACAGACAATGGGTAT+GGG | + | chr1_1:78002096-78002115 | Msa0045990:CDS | 40.0% | |
| TCCACCGAAAAGCTATTCAT+TGG | + | chr1_1:78002286-78002305 | Msa0045990:CDS | 40.0% | |
| ! | TCCAATGAATAGCTTTTCGG+TGG | - | chr1_1:78002290-78002309 | None:intergenic | 40.0% |
| GTCCAATGGATATCATGACA+TGG | + | chr1_1:78002325-78002344 | Msa0045990:CDS | 40.0% | |
| GTCCATGTCATGATATCCAT+TGG | - | chr1_1:78002330-78002349 | None:intergenic | 40.0% | |
| AAGCTATGATGAACCTGAAG+AGG | + | chr1_1:78002367-78002386 | Msa0045990:CDS | 40.0% | |
| !! | AGCCAAGCTTATTTTCTCCT+CGG | - | chr1_1:78002534-78002553 | None:intergenic | 40.0% |
| ! | CAGCAATTTGGGACCTTATA+TGG | - | chr1_1:78002571-78002590 | None:intergenic | 40.0% |
| AGATGCTCTGTCAGCAATTT+GGG | - | chr1_1:78002582-78002601 | None:intergenic | 40.0% | |
| TGTTTCCCTCTCACTAAAAG+AGG | - | chr1_1:78002825-78002844 | None:intergenic | 40.0% | |
| GCAAGATAGCTGAAGAAAAC+AGG | + | chr1_1:78002966-78002985 | Msa0045990:CDS | 40.0% | |
| GCACATCAAGAAAATGCAGA+TGG | + | chr1_1:78003159-78003178 | Msa0045990:CDS | 40.0% | |
| GTTGGAATCACACAAGTTTG+AGG | + | chr1_1:78003225-78003244 | Msa0045990:CDS | 40.0% | |
| ACTCTCTTAAACCGGTTGAA+AGG | + | chr1_1:78003274-78003293 | Msa0045990:CDS | 40.0% | |
| TTAAACCGGTTGAAAGGTGA+TGG | + | chr1_1:78003280-78003299 | Msa0045990:CDS | 40.0% | |
| TTGTTAGGCCTTGATTCTGA+AGG | - | chr1_1:78003366-78003385 | None:intergenic | 40.0% | |
| GGCCTAACAATGCTAAATGA+AGG | + | chr1_1:78003376-78003395 | Msa0045990:CDS | 40.0% | |
| CTGGAACTCGTTAAAGAGAA+TGG | + | chr1_1:78003421-78003440 | Msa0045990:CDS | 40.0% | |
| !! | TGAACTTGCTACAGCAGTAA+GGG | + | chr1_1:78003889-78003908 | Msa0045990:CDS | 40.0% |
| GTTGAAGAACCTTGAACTTC+AGG | + | chr1_1:78003976-78003995 | Msa0045990:CDS | 40.0% | |
| !!! | CAGCAGGTTTTAGAGTGATT+TGG | + | chr1_1:78004211-78004230 | Msa0045990:intron | 40.0% |
| TGGGTGAAAAAATGGTGAAG+TGG | - | chr1_1:78004354-78004373 | None:intergenic | 40.0% | |
| TAGCAGGCTTGAGAAAGATT+TGG | + | chr1_1:78004517-78004536 | Msa0045990:intron | 40.0% | |
| CCTCGTCGTGAAATTAAAGT+AGG | - | chr1_1:78004606-78004625 | None:intergenic | 40.0% | |
| ! | CCTACTTTAATTTCACGACG+AGG | + | chr1_1:78004603-78004622 | Msa0045990:intron | 40.0% |
| GTGTTCTTTAGGTGCAATGA+TGG | - | chr1_1:78004643-78004662 | None:intergenic | 40.0% | |
| ATGTCATGTCTCATGGTTTC+TGG | - | chr1_1:78004871-78004890 | None:intergenic | 40.0% | |
| AACCATGAGACATGACATCT+CGG | + | chr1_1:78004873-78004892 | Msa0045990:intron | 40.0% | |
| CTATATGAACGAAAGGTTCC+CGG | + | chr1_1:78004958-78004977 | Msa0045990:intron | 40.0% | |
| !!! | AAGTTTTAAGTTGGCAGTCG+AGG | + | chr1_1:78005120-78005139 | Msa0045990:intron | 40.0% |
| CTTATCCCACTAAAAGGAGA+GGG | - | chr1_1:78005156-78005175 | None:intergenic | 40.0% | |
| TCTTATCCCACTAAAAGGAG+AGG | - | chr1_1:78005157-78005176 | None:intergenic | 40.0% | |
| ! | CCAAGTCTTATCCCACTAAA+AGG | - | chr1_1:78005162-78005181 | None:intergenic | 40.0% |
| ! | CCTTTTAGTGGGATAAGACT+TGG | + | chr1_1:78005159-78005178 | Msa0045990:intron | 40.0% |
| CAGTATAAACTGCCTTCAAC+GGG | + | chr1_1:78005303-78005322 | Msa0045990:CDS | 40.0% | |
| GGATCTTCAAGAGTCTACAA+GGG | + | chr1_1:78005324-78005343 | Msa0045990:CDS | 40.0% | |
| CAAGGGAGTTATCAATCATG+AGG | + | chr1_1:78005341-78005360 | Msa0045990:CDS | 40.0% | |
| AGGGAGTTATCAATCATGAG+GGG | + | chr1_1:78005343-78005362 | Msa0045990:CDS | 40.0% | |
| !! | AATGTTGCCAAAAGTGTCAG+AGG | + | chr1_1:78005366-78005385 | Msa0045990:CDS | 40.0% |
| CTCAGAGATCGAAATGCTAA+AGG | + | chr1_1:78005447-78005466 | Msa0045990:CDS | 40.0% | |
| ACAAAAGACCCTGTCTCTAT+GGG | + | chr1_1:78005542-78005561 | Msa0045990:CDS | 40.0% | |
| CTTTAATGAGCTTGTGGCAG+CGG | + | chr1_1:78001245-78001264 | Msa0045990:five_prime_UTR | 45.0% | |
| TTCAGATCGTCTGCATCTAG+CGG | + | chr1_1:78001305-78001324 | Msa0045990:CDS | 45.0% | |
| AACAAATGAGCAGTCTTGGG+AGG | + | chr1_1:78001358-78001377 | Msa0045990:CDS | 45.0% | |
| TCAAGCTCATGGCAAAAGTG+AGG | + | chr1_1:78001406-78001425 | Msa0045990:CDS | 45.0% | |
| TCATGGCAAAAGTGAGGACA+AGG | + | chr1_1:78001412-78001431 | Msa0045990:CDS | 45.0% | |
| CATGGCAAAAGTGAGGACAA+GGG | + | chr1_1:78001413-78001432 | Msa0045990:CDS | 45.0% | |
| TTGGACCAGCACTTGAACTT+TGG | - | chr1_1:78001475-78001494 | None:intergenic | 45.0% | |
| ACATTGACCTGCTCCTTCTA+AGG | - | chr1_1:78001499-78001518 | None:intergenic | 45.0% | |
| AGTTGGATCTTTGACCTGGA+AGG | - | chr1_1:78001531-78001550 | None:intergenic | 45.0% | |
| GATCTTGAAGAACTGCTAGC+AGG | - | chr1_1:78001804-78001823 | None:intergenic | 45.0% | |
| CAACGTTTCAAGCATGGTTG+TGG | + | chr1_1:78001860-78001879 | Msa0045990:CDS | 45.0% | |
| TTCGTTCCTCATCCCAAGAT+TGG | + | chr1_1:78002078-78002097 | Msa0045990:CDS | 45.0% | |
| TCCCAAGATTGGACAGACAA+TGG | + | chr1_1:78002089-78002108 | Msa0045990:CDS | 45.0% | |
| CCCATTGTCTGTCCAATCTT+GGG | - | chr1_1:78002093-78002112 | None:intergenic | 45.0% | |
| CCCAAGATTGGACAGACAAT+GGG | + | chr1_1:78002090-78002109 | Msa0045990:CDS | 45.0% | |
| ACCCATTGTCTGTCCAATCT+TGG | - | chr1_1:78002094-78002113 | None:intergenic | 45.0% | |
| GATTGGACAGACAATGGGTA+TGG | + | chr1_1:78002095-78002114 | Msa0045990:CDS | 45.0% | |
| ATGACATGGACGGTAATTGC+AGG | + | chr1_1:78002339-78002358 | Msa0045990:CDS | 45.0% | |
| TGACATGGACGGTAATTGCA+GGG | + | chr1_1:78002340-78002359 | Msa0045990:CDS | 45.0% | |
| TCTGCATCAAGATCCTCTTC+AGG | - | chr1_1:78002383-78002402 | None:intergenic | 45.0% | |
| GAGAAGATCAAAGGAAGCTG+AGG | + | chr1_1:78002409-78002428 | Msa0045990:CDS | 45.0% | |
| GTCACGTCATAACCATAGTC+AGG | - | chr1_1:78002482-78002501 | None:intergenic | 45.0% | |
| !! | AGCTTATTTTCTCCTCGGCT+AGG | - | chr1_1:78002529-78002548 | None:intergenic | 45.0% |
| AGCCGAGGAGAAAATAAGCT+TGG | + | chr1_1:78002529-78002548 | Msa0045990:CDS | 45.0% | |
| CAGATGCTCTGTCAGCAATT+TGG | - | chr1_1:78002583-78002602 | None:intergenic | 45.0% | |
| GAATGAGATGCAGTCAGCAT+TGG | + | chr1_1:78002670-78002689 | Msa0045990:CDS | 45.0% | |
| ! | GTCAGCATTGGAGAAGGAAT+TGG | + | chr1_1:78002682-78002701 | Msa0045990:CDS | 45.0% |
| CATTGGAGAAGGAATTGGAC+AGG | + | chr1_1:78002687-78002706 | Msa0045990:CDS | 45.0% | |
| AGTACCAGTCAGAAGAGCAA+AGG | + | chr1_1:78002741-78002760 | Msa0045990:CDS | 45.0% | |
| ACATACTGACCAACAGCTCA+AGG | + | chr1_1:78002865-78002884 | Msa0045990:CDS | 45.0% | |
| TAGTCAACACCTTGAGCTGT+TGG | - | chr1_1:78002877-78002896 | None:intergenic | 45.0% | |
| !! | GCTCAAGGTGTTGACTAGTA+AGG | + | chr1_1:78002880-78002899 | Msa0045990:CDS | 45.0% |
| AAATGCAGATGGAGCTGATG+AGG | + | chr1_1:78003170-78003189 | Msa0045990:CDS | 45.0% | |
| GATGGAGCTGATGAGGTTAA+CGG | + | chr1_1:78003177-78003196 | Msa0045990:CDS | 45.0% | |
| ATGGAGCTGATGAGGTTAAC+GGG | + | chr1_1:78003178-78003197 | Msa0045990:CDS | 45.0% | |
| ATCAGTCTTGAGAAGGGAGT+TGG | + | chr1_1:78003207-78003226 | Msa0045990:CDS | 45.0% | |
| GGAATCACACAAGTTTGAGG+AGG | + | chr1_1:78003228-78003247 | Msa0045990:CDS | 45.0% | |
| CTTTGCCATCACCTTTCAAC+CGG | - | chr1_1:78003288-78003307 | None:intergenic | 45.0% | |
| TAGACAAAGAACTATGCGCC+CGG | + | chr1_1:78003332-78003351 | Msa0045990:CDS | 45.0% | |
| ATCTGCTGCCTTCAGAATCA+AGG | + | chr1_1:78003355-78003374 | Msa0045990:CDS | 45.0% | |
| TGGACTCAAAAGTGGAACTG+AGG | + | chr1_1:78003504-78003523 | Msa0045990:CDS | 45.0% | |
| GGACTCAAAAGTGGAACTGA+GGG | + | chr1_1:78003505-78003524 | Msa0045990:CDS | 45.0% | |
| GACTCAAAAGTGGAACTGAG+GGG | + | chr1_1:78003506-78003525 | Msa0045990:CDS | 45.0% | |
| TGAGCTTAAAGCGGAACGTT+TGG | + | chr1_1:78003805-78003824 | Msa0045990:CDS | 45.0% | |
| CAGCTTGTATCTGCTCAACT+TGG | - | chr1_1:78003871-78003890 | None:intergenic | 45.0% | |
| !! | CTGAACTTGCTACAGCAGTA+AGG | + | chr1_1:78003888-78003907 | Msa0045990:CDS | 45.0% |
| !! | GAACTTGCTACAGCAGTAAG+GGG | + | chr1_1:78003890-78003909 | Msa0045990:CDS | 45.0% |
| GAGTGCACAACCATAAGTCT+CGG | + | chr1_1:78004110-78004129 | Msa0045990:intron | 45.0% | |
| !! | ATCACTCTAAAACCTGCTGC+TGG | - | chr1_1:78004210-78004229 | None:intergenic | 45.0% |
| CTAACCTTGTAACTGCTAGC+AGG | + | chr1_1:78004501-78004520 | Msa0045990:intron | 45.0% | |
| GGCTTGAGAAAGATTTGGCA+CGG | + | chr1_1:78004522-78004541 | Msa0045990:intron | 45.0% | |
| ! | CTTTAGGTGCAATGATGGTG+TGG | - | chr1_1:78004638-78004657 | None:intergenic | 45.0% |
| AAACATAATGCCACGGGCAA+TGG | + | chr1_1:78004665-78004684 | Msa0045990:intron | 45.0% | |
| AACCGAGATGTCATGTCTCA+TGG | - | chr1_1:78004878-78004897 | None:intergenic | 45.0% | |
| ATGAGACATGACATCTCGGT+TGG | + | chr1_1:78004877-78004896 | Msa0045990:intron | 45.0% | |
| CGGGAACCTTTCGTTCATAT+AGG | - | chr1_1:78004960-78004979 | None:intergenic | 45.0% | |
| TGGTTTCTTGTACTCGTCGA+TGG | - | chr1_1:78005004-78005023 | None:intergenic | 45.0% | |
| ! | ACACAACCCTCTCCTTTTAG+TGG | + | chr1_1:78005147-78005166 | Msa0045990:intron | 45.0% |
| ! | CACAACCCTCTCCTTTTAGT+GGG | + | chr1_1:78005148-78005167 | Msa0045990:intron | 45.0% |
| ACTCTTGAAGATCCCGTTGA+AGG | - | chr1_1:78005318-78005337 | None:intergenic | 45.0% | |
| GGGATCTTCAAGAGTCTACA+AGG | + | chr1_1:78005323-78005342 | Msa0045990:CDS | 45.0% | |
| AGAGGAGAGGGATAAGTTGT+GGG | + | chr1_1:78005384-78005403 | Msa0045990:CDS | 45.0% | |
| GACAAAAGACCCTGTCTCTA+TGG | + | chr1_1:78005541-78005560 | Msa0045990:CDS | 45.0% | |
| ! | GTGCTGGTCCAAACCTTAGA+AGG | + | chr1_1:78001483-78001502 | Msa0045990:CDS | 50.0% |
| GTCCAAACCTTAGAAGGAGC+AGG | + | chr1_1:78001489-78001508 | Msa0045990:CDS | 50.0% | |
| !! | GACCTGCTCCTTCTAAGGTT+TGG | - | chr1_1:78001494-78001513 | None:intergenic | 50.0% |
| AAGGAGCAGGTCAATGTCCT+CGG | + | chr1_1:78001502-78001521 | Msa0045990:CDS | 50.0% | |
| GCAGACACTGCAGATTGTGT+TGG | - | chr1_1:78001753-78001772 | None:intergenic | 50.0% | |
| CTGCTGTCCAAAATTCCCAG+AGG | + | chr1_1:78001769-78001788 | Msa0045990:CDS | 50.0% | |
| !! | TCTCGCACCTCTGGGAATTT+TGG | - | chr1_1:78001779-78001798 | None:intergenic | 50.0% |
| TGATGGGGAACAACAGCTAG+AGG | + | chr1_1:78001893-78001912 | Msa0045990:CDS | 50.0% | |
| AGCTAGAGGAAAGTAGACCC+AGG | + | chr1_1:78001907-78001926 | Msa0045990:CDS | 50.0% | |
| TTCCTCTGTGAACTGCTCCT+GGG | - | chr1_1:78001927-78001946 | None:intergenic | 50.0% | |
| ATTCCTCTGTGAACTGCTCC+TGG | - | chr1_1:78001928-78001947 | None:intergenic | 50.0% | |
| AGGAGCAGTTCACAGAGGAA+TGG | + | chr1_1:78001927-78001946 | Msa0045990:CDS | 50.0% | |
| CAGAGGAATGGCAGTAGACA+TGG | + | chr1_1:78001939-78001958 | Msa0045990:CDS | 50.0% | |
| CTTGGGATGAGGAACGAAGA+CGG | - | chr1_1:78002076-78002095 | None:intergenic | 50.0% | |
| GTCTGTCCAATCTTGGGATG+AGG | - | chr1_1:78002087-78002106 | None:intergenic | 50.0% | |
| GACATGGACGGTAATTGCAG+GGG | + | chr1_1:78002341-78002360 | Msa0045990:CDS | 50.0% | |
| GACAATCAGAAACCTAGCCG+AGG | + | chr1_1:78002514-78002533 | Msa0045990:CDS | 50.0% | |
| ! | GATGCAGTCAGCATTGGAGA+AGG | + | chr1_1:78002676-78002695 | Msa0045990:CDS | 50.0% |
| TGGAGAAGGAATTGGACAGG+AGG | + | chr1_1:78002690-78002709 | Msa0045990:CDS | 50.0% | |
| GAAGCCTTTGCTCTTCTGAC+TGG | - | chr1_1:78002748-78002767 | None:intergenic | 50.0% | |
| ! | ATTCTGAAGGCAGCAGATCC+GGG | - | chr1_1:78003353-78003372 | None:intergenic | 50.0% |
| ! | GATTCTGAAGGCAGCAGATC+CGG | - | chr1_1:78003354-78003373 | None:intergenic | 50.0% |
| GTGGAACTGAGGGGTTAACA+AGG | + | chr1_1:78003515-78003534 | Msa0045990:CDS | 50.0% | |
| ACTCGTGAGACGCAGTTGAA+AGG | - | chr1_1:78003958-78003977 | None:intergenic | 50.0% | |
| GGTGACAGACCTGAAGTTCA+AGG | - | chr1_1:78003988-78004007 | None:intergenic | 50.0% | |
| CAAGCCTGCTAGCAGTTACA+AGG | - | chr1_1:78004508-78004527 | None:intergenic | 50.0% | |
| CTGCATGACAAAGCCCATAG+AGG | + | chr1_1:78004695-78004714 | Msa0045990:intron | 50.0% | |
| CATGACATCTCGGTTGGCAT+TGG | + | chr1_1:78004883-78004902 | Msa0045990:intron | 50.0% | |
| !! | TGCCAAAAGTGTCAGAGGAG+AGG | + | chr1_1:78005371-78005390 | Msa0045990:CDS | 50.0% |
| !! | GCCAAAAGTGTCAGAGGAGA+GGG | + | chr1_1:78005372-78005391 | Msa0045990:CDS | 50.0% |
| ! | TCCCTCTCCTCTGACACTTT+TGG | - | chr1_1:78005376-78005395 | None:intergenic | 50.0% |
| CAGAGGAGAGGGATAAGTTG+TGG | + | chr1_1:78005383-78005402 | Msa0045990:CDS | 50.0% | |
| TCAGGACTCCCATAGAGACA+GGG | - | chr1_1:78005553-78005572 | None:intergenic | 50.0% | |
| ATCAGGACTCCCATAGAGAC+AGG | - | chr1_1:78005554-78005573 | None:intergenic | 50.0% | |
| AGATCGTCTGCATCTAGCGG+TGG | + | chr1_1:78001308-78001327 | Msa0045990:CDS | 55.0% | |
| AATGTCCTCGGCTTCCTTCC+AGG | + | chr1_1:78001514-78001533 | Msa0045990:CDS | 55.0% | |
| TTTGACCTGGAAGGAAGCCG+AGG | - | chr1_1:78001522-78001541 | None:intergenic | 55.0% | |
| AGCAGGTTTCTCGCACCTCT+GGG | - | chr1_1:78001787-78001806 | None:intergenic | 55.0% | |
| TAGCAGGTTTCTCGCACCTC+TGG | - | chr1_1:78001788-78001807 | None:intergenic | 55.0% | |
| ! | TGCTGACAGAGCATCTGCCA+AGG | + | chr1_1:78002586-78002605 | Msa0045990:CDS | 55.0% |
| TGGACAGGAGGTCAAGTGAC+TGG | + | chr1_1:78002702-78002721 | Msa0045990:CDS | 55.0% | |
| ! | GGGCTTTGTCATGCAGCCAT+AGG | - | chr1_1:78004691-78004710 | None:intergenic | 55.0% |
| GACCCAGGAGCAGTTCACAG+AGG | + | chr1_1:78001922-78001941 | Msa0045990:CDS | 60.0% | |
| ATGCCACGGGCAATGGCCTA+TGG | + | chr1_1:78004672-78004691 | Msa0045990:intron | 60.0% | |
| CAGCCATAGGCCATTGCCCG+TGG | - | chr1_1:78004678-78004697 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 78000244 | 78005815 | 78000244 | ID=Msa0045990;Name=Msa0045990 |
| chr1_1 | mRNA | 78000244 | 78005815 | 78000244 | ID=Msa0045990-mRNA-1;Parent=Msa0045990;Name=Msa0045990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=227|1|1|1|0.6|0.5|6|224|917 |
| chr1_1 | exon | 78000244 | 78000321 | 78000244 | ID=Msa0045990-mRNA-1:exon:26736;Parent=Msa0045990-mRNA-1 |
| chr1_1 | exon | 78000645 | 78000692 | 78000645 | ID=Msa0045990-mRNA-1:exon:26737;Parent=Msa0045990-mRNA-1 |
| chr1_1 | exon | 78001186 | 78001609 | 78001186 | ID=Msa0045990-mRNA-1:exon:26738;Parent=Msa0045990-mRNA-1 |
| chr1_1 | exon | 78001716 | 78003633 | 78001716 | ID=Msa0045990-mRNA-1:exon:26739;Parent=Msa0045990-mRNA-1 |
| chr1_1 | exon | 78003791 | 78003997 | 78003791 | ID=Msa0045990-mRNA-1:exon:26740;Parent=Msa0045990-mRNA-1 |
| chr1_1 | exon | 78005286 | 78005815 | 78005286 | ID=Msa0045990-mRNA-1:exon:26741;Parent=Msa0045990-mRNA-1 |
| chr1_1 | five_prime_UTR | 78000244 | 78000321 | 78000244 | ID=Msa0045990-mRNA-1:five_prime_utr;Parent=Msa0045990-mRNA-1 |
| chr1_1 | five_prime_UTR | 78000645 | 78000692 | 78000645 | ID=Msa0045990-mRNA-1:five_prime_utr;Parent=Msa0045990-mRNA-1 |
| chr1_1 | five_prime_UTR | 78001186 | 78001286 | 78001186 | ID=Msa0045990-mRNA-1:five_prime_utr;Parent=Msa0045990-mRNA-1 |
| chr1_1 | CDS | 78001287 | 78001609 | 78001287 | ID=Msa0045990-mRNA-1:cds;Parent=Msa0045990-mRNA-1 |
| chr1_1 | CDS | 78001716 | 78003633 | 78001716 | ID=Msa0045990-mRNA-1:cds;Parent=Msa0045990-mRNA-1 |
| chr1_1 | CDS | 78003791 | 78003997 | 78003791 | ID=Msa0045990-mRNA-1:cds;Parent=Msa0045990-mRNA-1 |
| chr1_1 | CDS | 78005286 | 78005591 | 78005286 | ID=Msa0045990-mRNA-1:cds;Parent=Msa0045990-mRNA-1 |
| chr1_1 | three_prime_UTR | 78005592 | 78005815 | 78005592 | ID=Msa0045990-mRNA-1:three_prime_utr;Parent=Msa0045990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
