Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793170 | XP_003592787.1 | 98.475 | 918 | 13 | 1 | 1 | 917 | 1 | 918 | 0.0 | 1852 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793170 | G7IF22 | 98.475 | 918 | 13 | 1 | 1 | 917 | 1 | 918 | 0.0 | 1852 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045990 | Msa0793170 | 0.942834 | 3.557884e-102 | -8.615850e-47 |
| Msa0793170 | Msa1415540 | 0.819506 | 1.120525e-52 | -8.615850e-47 |
| Msa0437860 | Msa0793170 | 0.953797 | 1.240405e-111 | -8.615850e-47 |
| Msa0528570 | Msa0793170 | 0.821775 | 3.374446e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793170 | MtrunA17_Chr1g0213221 | 98.475 | 918 | 13 | 1 | 1 | 917 | 1 | 918 | 0.0 | 1852 |
| Msa0793170 | MtrunA17_Chr5g0422951 | 62.011 | 179 | 21 | 3 | 443 | 619 | 156 | 289 | 3.70e-51 | 186 |
| Msa0793170 | MtrunA17_Chr5g0422951 | 55.147 | 136 | 49 | 6 | 352 | 476 | 278 | 412 | 2.24e-25 | 110 |
| Msa0793170 | MtrunA17_Chr4g0002081 | 32.487 | 197 | 68 | 4 | 704 | 900 | 95 | 226 | 9.20e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793170 | AT3G55060.2 | 46.253 | 934 | 443 | 14 | 1 | 914 | 1 | 895 | 0.0 | 677 |
| Msa0793170 | AT3G55060.1 | 46.253 | 934 | 443 | 14 | 1 | 914 | 1 | 895 | 0.0 | 677 |
| Msa0793170 | AT2G39300.1 | 42.581 | 930 | 414 | 21 | 1 | 912 | 1 | 828 | 0.0 | 609 |
| Msa0793170 | AT2G39300.2 | 42.581 | 930 | 414 | 21 | 1 | 912 | 1 | 828 | 0.0 | 609 |
| Msa0793170 | AT2G39300.4 | 42.581 | 930 | 414 | 21 | 1 | 912 | 1 | 828 | 0.0 | 609 |
| Msa0793170 | AT3G55060.3 | 46.420 | 838 | 391 | 13 | 1 | 819 | 1 | 799 | 0.0 | 605 |
| Msa0793170 | AT2G39300.3 | 42.345 | 921 | 395 | 22 | 1 | 912 | 1 | 794 | 0.0 | 598 |
Find 198 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCATATCTCTCTCTTTA+TGG | 0.095946 | 5_3:-5159272 | Msa0793170:intron |
| CAGCAATTTGGGACCTTATA+TGG | 0.121815 | 5_3:+5157004 | None:intergenic |
| TATTCTTCTTTCAAAGAAAT+TGG | 0.188162 | 5_3:-5157133 | Msa0793170:CDS |
| CAGATGCTCTGTCAGCAATT+TGG | 0.216808 | 5_3:+5156992 | None:intergenic |
| ACTCCATTAGTTGGCGAATT+AGG | 0.227948 | 5_3:+5157567 | None:intergenic |
| TCTCGCACCTCTGGGAATTT+TGG | 0.230603 | 5_3:+5157796 | None:intergenic |
| AGCAACTTGCTTTCTAGATT+TGG | 0.230610 | 5_3:+5158128 | None:intergenic |
| AAAGAGAATGGACAGATTAT+TGG | 0.252349 | 5_3:-5156139 | Msa0793170:CDS |
| TCCCTCTCCTCTGACACTTT+TGG | 0.259321 | 5_3:+5154201 | None:intergenic |
| ATACTTGTGTTCAAAGTTAC+TGG | 0.269237 | 5_3:-5156170 | Msa0793170:CDS |
| CAACAGACTGGTTCTTATTA+AGG | 0.287600 | 5_3:+5156449 | None:intergenic |
| GACAAAAGACCCTGTCTCTA+TGG | 0.296604 | 5_3:-5154033 | Msa0793170:CDS |
| GAGCAAGAGAAGACAATAAT+AGG | 0.297652 | 5_3:-5156496 | Msa0793170:CDS |
| AAACTTGTGATATTTCTAAA+AGG | 0.300185 | 5_3:-5157404 | Msa0793170:CDS |
| AGATGCTCTGTCAGCAATTT+GGG | 0.301976 | 5_3:+5156993 | None:intergenic |
| ATTCCTCTGTGAACTGCTCC+TGG | 0.305181 | 5_3:+5157647 | None:intergenic |
| AATGTCCTCGGCTTCCTTCC+AGG | 0.310353 | 5_3:-5158058 | Msa0793170:CDS |
| ACATTGACCTGCTCCTTCTA+AGG | 0.312987 | 5_3:+5158076 | None:intergenic |
| TATCCATTGGACATTCTATA+AGG | 0.326559 | 5_3:+5157258 | None:intergenic |
| GACCTGCTCCTTCTAAGGTT+TGG | 0.333731 | 5_3:+5158081 | None:intergenic |
| GACTGCTCATTTGTTGACTT+TGG | 0.340876 | 5_3:+5158222 | None:intergenic |
| AATGGACAGATTATTGGAAA+TGG | 0.343957 | 5_3:-5156133 | Msa0793170:CDS |
| TAGATATCTTCGATTGTGAT+TGG | 0.345214 | 5_3:+5157354 | None:intergenic |
| ACCTTCCTTAATGAGTATAT+CGG | 0.347951 | 5_3:+5154083 | None:intergenic |
| ACCCATTGTCTGTCCAATCT+TGG | 0.354752 | 5_3:+5157481 | None:intergenic |
| GCAAGATAGCTGAAGAAAAC+AGG | 0.355535 | 5_3:-5156606 | Msa0793170:CDS |
| TAGCAGGTTTCTCGCACCTC+TGG | 0.358138 | 5_3:+5157787 | None:intergenic |
| GGTGTTGTATGTTGAACTTT+TGG | 0.362328 | 5_3:+5157588 | None:intergenic |
| TGATACCGATATACTCATTA+AGG | 0.362914 | 5_3:-5154088 | Msa0793170:CDS |
| TTCGTTCCTCATCCCAAGAT+TGG | 0.366085 | 5_3:-5157494 | Msa0793170:CDS |
| TAGCGGTGGAAGCAATAATT+TGG | 0.367004 | 5_3:-5158250 | Msa0793170:CDS |
| GTTGAAGAACCTTGAACTTC+AGG | 0.369839 | 5_3:-5155596 | Msa0793170:intron |
| GATTCTGAAGGCAGCAGATC+CGG | 0.369921 | 5_3:+5156221 | None:intergenic |
| AGACAAAATCGAATCCAAAA+AGG | 0.375712 | 5_3:-5158901 | Msa0793170:intron |
| TTTCTAGGAAAATTGATAAA+GGG | 0.382527 | 5_3:-5158934 | Msa0793170:intron |
| AGATCACATCATGAGTCATC+TGG | 0.384497 | 5_3:-5157753 | Msa0793170:CDS |
| ACACCTAATTCGCCAACTAA+TGG | 0.392084 | 5_3:-5157570 | Msa0793170:CDS |
| AGCAATTTGGGACCTTATAT+GGG | 0.400673 | 5_3:+5157005 | None:intergenic |
| TGAGCTTAAAGCGGAACGTT+TGG | 0.402269 | 5_3:-5155767 | Msa0793170:CDS |
| GAATCTGAAACCAAAATTCA+TGG | 0.403955 | 5_3:-5156088 | Msa0793170:CDS |
| TAGAAGTTTCAACCCATATA+AGG | 0.404168 | 5_3:-5157017 | Msa0793170:CDS |
| TTGGACCAGCACTTGAACTT+TGG | 0.410571 | 5_3:+5158100 | None:intergenic |
| GTCAGCATTGGAGAAGGAAT+TGG | 0.411500 | 5_3:-5156890 | Msa0793170:CDS |
| TGCCTTCATTTAGCATTGTT+AGG | 0.412345 | 5_3:+5156194 | None:intergenic |
| TCACTAGCAATGCTACTTGT+AGG | 0.415999 | 5_3:+5158015 | None:intergenic |
| ATGACATGGACGGTAATTGC+AGG | 0.416460 | 5_3:-5157233 | Msa0793170:CDS |
| ATGGACAGATTATTGGAAAT+GGG | 0.417527 | 5_3:-5156132 | Msa0793170:CDS |
| CCCATTGTCTGTCCAATCTT+GGG | 0.418832 | 5_3:+5157482 | None:intergenic |
| TCTGCATCAAGATCCTCTTC+AGG | 0.419732 | 5_3:+5157192 | None:intergenic |
| CATCAATTTGAGCATTCGTT+GGG | 0.424818 | 5_3:-5157985 | Msa0793170:CDS |
| CTTTGCCATCACCTTTCAAC+CGG | 0.428446 | 5_3:+5156287 | None:intergenic |
| TGTTTCCCTCTCACTAAAAG+AGG | 0.433329 | 5_3:+5156750 | None:intergenic |
| ATCTGTCTTGTAGTTCTAAG+AGG | 0.437045 | 5_3:+5156629 | None:intergenic |
| ATTATTGGAAATGGGTTAGC+TGG | 0.437354 | 5_3:-5156124 | Msa0793170:CDS |
| GTGCTGGTCCAAACCTTAGA+AGG | 0.438288 | 5_3:-5158089 | Msa0793170:CDS |
| AGTCAACAAATGAGCAGTCT+TGG | 0.440835 | 5_3:-5158218 | Msa0793170:CDS |
| CAGCTTGTATCTGCTCAACT+TGG | 0.443713 | 5_3:+5155704 | None:intergenic |
| TGCTCATTTGTTGACTTTGG+AGG | 0.450076 | 5_3:+5158225 | None:intergenic |
| CAGTATAAACTGCCTTCAAC+GGG | 0.453079 | 5_3:-5154271 | Msa0793170:CDS |
| CTTTAATGAGCTTGTGGCAG+CGG | 0.453579 | 5_3:-5158327 | Msa0793170:five_prime_UTR |
| AGAGGAGAGGGATAAGTTGT+GGG | 0.455210 | 5_3:-5154190 | Msa0793170:CDS |
| CAACGTTTCAAGCATGGTTG+TGG | 0.458361 | 5_3:-5157712 | Msa0793170:CDS |
| AAAATATAACTCTCTTAAAC+CGG | 0.459855 | 5_3:-5156306 | Msa0793170:CDS |
| GTTGTGGATCGTTACATTGA+TGG | 0.460187 | 5_3:-5157696 | Msa0793170:CDS |
| TTCCTCTGTGAACTGCTCCT+GGG | 0.462437 | 5_3:+5157648 | None:intergenic |
| CTGAACTTGCTACAGCAGTA+AGG | 0.462455 | 5_3:-5155684 | Msa0793170:CDS |
| CAGAGGAGAGGGATAAGTTG+TGG | 0.463545 | 5_3:-5154191 | Msa0793170:CDS |
| GTCAACAAATGAGCAGTCTT+GGG | 0.464400 | 5_3:-5158217 | Msa0793170:CDS |
| GACTCAAAATTCTAAAATGC+GGG | 0.475892 | 5_3:-5157850 | Msa0793170:CDS |
| TACACAATTAAGTTCTTCCT+TGG | 0.477781 | 5_3:+5156969 | None:intergenic |
| ATCAGTCTTGAGAAGGGAGT+TGG | 0.478290 | 5_3:-5156365 | Msa0793170:CDS |
| ACTCTTGAAGATCCCGTTGA+AGG | 0.479489 | 5_3:+5154259 | None:intergenic |
| GATTGGACAGACAATGGGTA+TGG | 0.480642 | 5_3:-5157477 | Msa0793170:CDS |
| CTGGAACTCGTTAAAGAGAA+TGG | 0.481779 | 5_3:-5156151 | Msa0793170:CDS |
| AGCAGGTTTCTCGCACCTCT+GGG | 0.484380 | 5_3:+5157788 | None:intergenic |
| TAAAGACAGAACTGGAGATT+CGG | 0.485183 | 5_3:-5156948 | Msa0793170:CDS |
| ATGGAGCTGATGAGGTTAAC+GGG | 0.488315 | 5_3:-5156394 | Msa0793170:CDS |
| CAATAATAGGATTACGAGAT+GGG | 0.492820 | 5_3:-5156483 | Msa0793170:CDS |
| GAAGCCTTTGCTCTTCTGAC+TGG | 0.492870 | 5_3:+5156827 | None:intergenic |
| GATGGAGCTGATGAGGTTAA+CGG | 0.493847 | 5_3:-5156395 | Msa0793170:CDS |
| ATCTGCTGCCTTCAGAATCA+AGG | 0.494813 | 5_3:-5156217 | Msa0793170:CDS |
| GTCACGTCATAACCATAGTC+AGG | 0.494882 | 5_3:+5157093 | None:intergenic |
| TTCTAGCAACGTTTCAAGCA+TGG | 0.495405 | 5_3:-5157718 | Msa0793170:CDS |
| AAAATTCATGGACTCAAAAG+TGG | 0.495733 | 5_3:-5156076 | Msa0793170:CDS |
| TCTCTAAATGAATGAGCCCT+AGG | 0.496289 | 5_3:+5157534 | None:intergenic |
| CAGAGGAATGGCAGTAGACA+TGG | 0.496638 | 5_3:-5157633 | Msa0793170:CDS |
| ACCTAAACTGAAAATAGCTC+AGG | 0.499917 | 5_3:+5158375 | None:intergenic |
| ATCAGGACTCCCATAGAGAC+AGG | 0.500593 | 5_3:+5154023 | None:intergenic |
| ATTCTGAAGGCAGCAGATCC+GGG | 0.503534 | 5_3:+5156222 | None:intergenic |
| CCCAAGATTGGACAGACAAT+GGG | 0.503599 | 5_3:-5157482 | Msa0793170:CDS |
| TCATCAATTTGAGCATTCGT+TGG | 0.505621 | 5_3:-5157986 | Msa0793170:CDS |
| GAATGCTCAAATTGATGATA+CGG | 0.505632 | 5_3:+5157991 | None:intergenic |
| TCTCTTCAAAATTTCTTCGA+AGG | 0.505758 | 5_3:+5156578 | None:intergenic |
| GAATGAGATGCAGTCAGCAT+TGG | 0.506765 | 5_3:-5156902 | Msa0793170:CDS |
| ATCTAGTTGGATCTTTGACC+TGG | 0.507794 | 5_3:+5158040 | None:intergenic |
| GGTGACAGACCTGAAGTTCA+AGG | 0.510941 | 5_3:+5155587 | None:intergenic |
| AAAATGAAAGGGGAGATTCT+GGG | 0.512767 | 5_3:-5156664 | Msa0793170:CDS |
| GTTGGAATCACACAAGTTTG+AGG | 0.515914 | 5_3:-5156347 | Msa0793170:CDS |
| GTCCATGTCATGATATCCAT+TGG | 0.516805 | 5_3:+5157245 | None:intergenic |
| AAAATTCTAAAATGCGGGAC+AGG | 0.517664 | 5_3:-5157845 | Msa0793170:CDS |
| TCCACCGAAAAGCTATTCAT+TGG | 0.519275 | 5_3:-5157286 | Msa0793170:CDS |
| GGGATCTTCAAGAGTCTACA+AGG | 0.525019 | 5_3:-5154251 | Msa0793170:CDS |
| TTGTGGATCGTTACATTGAT+GGG | 0.526997 | 5_3:-5157695 | Msa0793170:CDS |
| TTGTCTTTGACTCCATTAGT+TGG | 0.530813 | 5_3:+5157558 | None:intergenic |
| TGAACTTGCTACAGCAGTAA+GGG | 0.530850 | 5_3:-5155683 | Msa0793170:CDS |
| ATGGAGTCAAAGACAAACCT+AGG | 0.531447 | 5_3:-5157551 | Msa0793170:CDS |
| GATCTTGAAGAACTGCTAGC+AGG | 0.535097 | 5_3:+5157771 | None:intergenic |
| GCCAAAAGTGTCAGAGGAGA+GGG | 0.535875 | 5_3:-5154202 | Msa0793170:CDS |
| ACAGTATAAACTGCCTTCAA+CGG | 0.536730 | 5_3:-5154272 | Msa0793170:CDS |
| ATCTATGCTAGATCATTGAA+TGG | 0.537882 | 5_3:-5157336 | Msa0793170:CDS |
| ACAAAAGACCCTGTCTCTAT+GGG | 0.538740 | 5_3:-5154032 | Msa0793170:CDS |
| AGCCGAGGAGAAAATAAGCT+TGG | 0.539237 | 5_3:-5157043 | Msa0793170:CDS |
| CTCAGAGATCGAAATGCTAA+AGG | 0.540448 | 5_3:-5154127 | Msa0793170:CDS |
| TCCCAAGATTGGACAGACAA+TGG | 0.540756 | 5_3:-5157483 | Msa0793170:CDS |
| GTCTGTCCAATCTTGGGATG+AGG | 0.541344 | 5_3:+5157488 | None:intergenic |
| GTCCAAACCTTAGAAGGAGC+AGG | 0.543619 | 5_3:-5158083 | Msa0793170:CDS |
| ACAATAATAGGATTACGAGA+TGG | 0.545799 | 5_3:-5156484 | Msa0793170:CDS |
| GGCCTAACAATGCTAAATGA+AGG | 0.547042 | 5_3:-5156196 | Msa0793170:CDS |
| GCTCAAGGTGTTGACTAGTA+AGG | 0.548476 | 5_3:-5156692 | Msa0793170:CDS |
| CTACTTGTAGGAGATCTAGT+TGG | 0.551710 | 5_3:+5158027 | None:intergenic |
| AAGCTATGATGAACCTGAAG+AGG | 0.552604 | 5_3:-5157205 | Msa0793170:CDS |
| AGGACAAAGAAGTAAAAGAA+AGG | 0.553426 | 5_3:-5153870 | Msa0793170:three_prime_UTR |
| TTGACACTTTAATGAGCTTG+TGG | 0.558836 | 5_3:-5158333 | Msa0793170:five_prime_UTR |
| GATAACCAAAGTTCAAGTGC+TGG | 0.559837 | 5_3:-5158105 | Msa0793170:CDS |
| TAGTCAACACCTTGAGCTGT+TGG | 0.560938 | 5_3:+5156698 | None:intergenic |
| CATTGGAGAAGGAATTGGAC+AGG | 0.562593 | 5_3:-5156885 | Msa0793170:CDS |
| GGACTCAAAAGTGGAACTGA+GGG | 0.563611 | 5_3:-5156067 | Msa0793170:CDS |
| ACTCTCTTAAACCGGTTGAA+AGG | 0.563780 | 5_3:-5156298 | Msa0793170:CDS |
| TCAAATATCAATGTTGCAAG+AGG | 0.565983 | 5_3:-5154061 | Msa0793170:CDS |
| TAATTGTGTAAAGACAGAAC+TGG | 0.566498 | 5_3:-5156956 | Msa0793170:CDS |
| TTAAACCGGTTGAAAGGTGA+TGG | 0.567877 | 5_3:-5156292 | Msa0793170:CDS |
| GAATAGAATCAGTCTTGAGA+AGG | 0.568371 | 5_3:-5156372 | Msa0793170:CDS |
| ACTCGTGAGACGCAGTTGAA+AGG | 0.568903 | 5_3:+5155617 | None:intergenic |
| TTTAACAATTGAGCTTAAAG+CGG | 0.569523 | 5_3:-5155776 | Msa0793170:CDS |
| AGGAGCAGTTCACAGAGGAA+TGG | 0.571707 | 5_3:-5157645 | Msa0793170:CDS |
| GAAAGTGAAACAAATTAGTG+AGG | 0.572556 | 5_3:-5154166 | Msa0793170:CDS |
| AGTTGGATCTTTGACCTGGA+AGG | 0.573525 | 5_3:+5158044 | None:intergenic |
| AAATGCAGATGGAGCTGATG+AGG | 0.574329 | 5_3:-5156402 | Msa0793170:CDS |
| AGAATTAATGAGAAGATCAA+AGG | 0.574358 | 5_3:-5157172 | Msa0793170:CDS |
| GATCACATCATGAGTCATCT+GGG | 0.574946 | 5_3:-5157752 | Msa0793170:CDS |
| TGGACAGGAGGTCAAGTGAC+TGG | 0.574983 | 5_3:-5156870 | Msa0793170:CDS |
| TCATGGCAAAAGTGAGGACA+AGG | 0.575944 | 5_3:-5158160 | Msa0793170:CDS |
| GCACATCAAGAAAATGCAGA+TGG | 0.576565 | 5_3:-5156413 | Msa0793170:CDS |
| AAGGAGCAGGTCAATGTCCT+CGG | 0.578720 | 5_3:-5158070 | Msa0793170:CDS |
| TTCAGATCGTCTGCATCTAG+CGG | 0.579431 | 5_3:-5158267 | Msa0793170:CDS |
| GGAGTGAATAATCAAGCTCA+TGG | 0.581614 | 5_3:-5158177 | Msa0793170:CDS |
| TAGACAAAGAACTATGCGCC+CGG | 0.586346 | 5_3:-5156240 | Msa0793170:CDS |
| ACATACTGACCAACAGCTCA+AGG | 0.587070 | 5_3:-5156707 | Msa0793170:CDS |
| TTGTTAGGCCTTGATTCTGA+AGG | 0.590931 | 5_3:+5156209 | None:intergenic |
| TGACATGGACGGTAATTGCA+GGG | 0.591350 | 5_3:-5157232 | Msa0793170:CDS |
| GAGAAGATCAAAGGAAGCTG+AGG | 0.593539 | 5_3:-5157163 | Msa0793170:CDS |
| TGCTGACAGAGCATCTGCCA+AGG | 0.599459 | 5_3:-5156986 | Msa0793170:CDS |
| ATTGAATAATCAATCGTCAG+AGG | 0.599707 | 5_3:-5155960 | Msa0793170:intron |
| CACTCATATATGTGAATGAG+TGG | 0.600849 | 5_3:-5153956 | Msa0793170:three_prime_UTR |
| TATCAATGCTCTCAACAGAC+TGG | 0.601344 | 5_3:+5156437 | None:intergenic |
| ATGATTAATTTGAACGAACG+AGG | 0.601596 | 5_3:+5159328 | None:intergenic |
| CAAGGGAGTTATCAATCATG+AGG | 0.603485 | 5_3:-5154233 | Msa0793170:CDS |
| GCAGACACTGCAGATTGTGT+TGG | 0.604333 | 5_3:+5157822 | None:intergenic |
| TTTGGTGGAAGATTCATGCA+AGG | 0.605034 | 5_3:+5157606 | None:intergenic |
| ATTGGACAGACAATGGGTAT+GGG | 0.606897 | 5_3:-5157476 | Msa0793170:CDS |
| AGTACCAGTCAGAAGAGCAA+AGG | 0.608026 | 5_3:-5156831 | Msa0793170:CDS |
| GAACCTTATAGAATGTCCAA+TGG | 0.608161 | 5_3:-5157261 | Msa0793170:CDS |
| GATGCAGTCAGCATTGGAGA+AGG | 0.610943 | 5_3:-5156896 | Msa0793170:CDS |
| TGCCAAAAGTGTCAGAGGAG+AGG | 0.611276 | 5_3:-5154203 | Msa0793170:CDS |
| AGACTCAAAATTCTAAAATG+CGG | 0.612562 | 5_3:-5157851 | Msa0793170:CDS |
| AACAAATGAGCAGTCTTGGG+AGG | 0.617471 | 5_3:-5158214 | Msa0793170:CDS |
| AAGGGAGTTATCAATCATGA+GGG | 0.619066 | 5_3:-5154232 | Msa0793170:CDS |
| CAAGATAGCTGAAGAAAACA+GGG | 0.623458 | 5_3:-5156605 | Msa0793170:CDS |
| ACCGATATACTCATTAAGGA+AGG | 0.625725 | 5_3:-5154084 | Msa0793170:CDS |
| AATGTTGCCAAAAGTGTCAG+AGG | 0.626739 | 5_3:-5154208 | Msa0793170:CDS |
| GTGGAACTGAGGGGTTAACA+AGG | 0.632898 | 5_3:-5156057 | Msa0793170:CDS |
| ATCAATTTGAGCATTCGTTG+GGG | 0.633663 | 5_3:-5157984 | Msa0793170:intron |
| AGATCGTCTGCATCTAGCGG+TGG | 0.633712 | 5_3:-5158264 | Msa0793170:CDS |
| AATAGAATCAGTCTTGAGAA+GGG | 0.635360 | 5_3:-5156371 | Msa0793170:CDS |
| TGGACTCAAAAGTGGAACTG+AGG | 0.641479 | 5_3:-5156068 | Msa0793170:CDS |
| GACATGGACGGTAATTGCAG+GGG | 0.642445 | 5_3:-5157231 | Msa0793170:CDS |
| AGCTAGAGGAAAGTAGACCC+AGG | 0.644071 | 5_3:-5157665 | Msa0793170:CDS |
| TGGAGTCAAAGACAAACCTA+GGG | 0.644740 | 5_3:-5157550 | Msa0793170:CDS |
| AAATGACATACTTAGATCTG+AGG | 0.646044 | 5_3:-5155659 | Msa0793170:CDS |
| CTTGGGATGAGGAACGAAGA+CGG | 0.646326 | 5_3:+5157499 | None:intergenic |
| GAACTTGCTACAGCAGTAAG+GGG | 0.648518 | 5_3:-5155682 | Msa0793170:CDS |
| AATGGATATCATGACATGGA+CGG | 0.648578 | 5_3:-5157243 | Msa0793170:CDS |
| TGATGGGGAACAACAGCTAG+AGG | 0.652052 | 5_3:-5157679 | Msa0793170:CDS |
| GGAATCACACAAGTTTGAGG+AGG | 0.656353 | 5_3:-5156344 | Msa0793170:CDS |
| TCAAGCTCATGGCAAAAGTG+AGG | 0.660201 | 5_3:-5158166 | Msa0793170:CDS |
| TGGAGAAGGAATTGGACAGG+AGG | 0.660839 | 5_3:-5156882 | Msa0793170:CDS |
| GTCCAATGGATATCATGACA+TGG | 0.663635 | 5_3:-5157247 | Msa0793170:CDS |
| TTTGACCTGGAAGGAAGCCG+AGG | 0.670204 | 5_3:+5158053 | None:intergenic |
| TGATTAATTTGAACGAACGA+GGG | 0.676427 | 5_3:+5159329 | None:intergenic |
| GACAATCAGAAACCTAGCCG+AGG | 0.679751 | 5_3:-5157058 | Msa0793170:CDS |
| TGTGGATCGTTACATTGATG+GGG | 0.681982 | 5_3:-5157694 | Msa0793170:CDS |
| GACCCAGGAGCAGTTCACAG+AGG | 0.686900 | 5_3:-5157650 | Msa0793170:CDS |
| TCAGGACTCCCATAGAGACA+GGG | 0.708382 | 5_3:+5154024 | None:intergenic |
| GACTCAAAAGTGGAACTGAG+GGG | 0.714232 | 5_3:-5156066 | Msa0793170:CDS |
| AGGGAGTTATCAATCATGAG+GGG | 0.716877 | 5_3:-5154231 | Msa0793170:CDS |
| GGATCTTCAAGAGTCTACAA+GGG | 0.733654 | 5_3:-5154250 | Msa0793170:CDS |
| CATGGCAAAAGTGAGGACAA+GGG | 0.735030 | 5_3:-5158159 | Msa0793170:CDS |
| CTGCTGTCCAAAATTCCCAG+AGG | 0.735905 | 5_3:-5157803 | Msa0793170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTCTTTATTTTTTTTGA+AGG | + | chr5_3:5154338-5154357 | None:intergenic | 10.0% |
| !! | TTCAAAAAAAATAAAGAAAT+TGG | - | chr5_3:5154337-5154356 | Msa0793170:intron | 10.0% |
| !!! | ATTTCATTAAAATTCTAAAA+GGG | + | chr5_3:5154419-5154438 | None:intergenic | 10.0% |
| !! | TATTTCATTAAAATTCTAAA+AGG | + | chr5_3:5154420-5154439 | None:intergenic | 10.0% |
| !!! | ATAATAATGATTTTAAAGAA+AGG | + | chr5_3:5157257-5157276 | None:intergenic | 10.0% |
| !! | ACTACAAAAAATAAAATTAT+GGG | + | chr5_3:5158567-5158586 | None:intergenic | 10.0% |
| !! | AACTACAAAAAATAAAATTA+TGG | + | chr5_3:5158568-5158587 | None:intergenic | 10.0% |
| !! | CAAAAATTGAAATTGAAAAA+TGG | + | chr5_3:5153890-5153909 | None:intergenic | 15.0% |
| !!! | ATTGTCTTAACTATAAATTT+TGG | - | chr5_3:5154360-5154379 | Msa0793170:intron | 15.0% |
| !!! | TTGTCTTAACTATAAATTTT+GGG | - | chr5_3:5154361-5154380 | Msa0793170:intron | 15.0% |
| !!! | TTTCTTTAATTGAATTTTAG+AGG | - | chr5_3:5157191-5157210 | Msa0793170:CDS | 15.0% |
| !! | ATAATCAATAAATTCAATGT+TGG | + | chr5_3:5157546-5157565 | None:intergenic | 15.0% |
| !! | AAAAAATAAAATTATGGGAT+TGG | + | chr5_3:5158562-5158581 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTAGTTTAATTTC+TGG | - | chr5_3:5158575-5158594 | Msa0793170:intron | 15.0% |
| !!! | GATTAGTCTAAGAATAAAAA+AGG | + | chr5_3:5153965-5153984 | None:intergenic | 20.0% |
| !!! | TTTTCTAGGAAAATTGATAA+AGG | - | chr5_3:5154174-5154193 | Msa0793170:CDS | 20.0% |
| !!! | TTTCTAGGAAAATTGATAAA+GGG | - | chr5_3:5154175-5154194 | Msa0793170:CDS | 20.0% |
| !! | CTAAATTACATATGAAAACA+TGG | + | chr5_3:5154259-5154278 | None:intergenic | 20.0% |
| !! | TAACACAGAAGAAAAAAAAA+GGG | + | chr5_3:5154289-5154308 | None:intergenic | 20.0% |
| !! | TTAACACAGAAGAAAAAAAA+AGG | + | chr5_3:5154290-5154309 | None:intergenic | 20.0% |
| !! | TTAATCAGTTAGAAAGAAAT+TGG | - | chr5_3:5154306-5154325 | Msa0793170:intron | 20.0% |
| !!! | TGTCTTAACTATAAATTTTG+GGG | - | chr5_3:5154362-5154381 | Msa0793170:intron | 20.0% |
| !!! | CATTTTGCACATATTAATTT+TGG | - | chr5_3:5155203-5155222 | Msa0793170:intron | 20.0% |
| !!! | AAACTTGTGATATTTCTAAA+AGG | - | chr5_3:5155705-5155724 | Msa0793170:CDS | 20.0% |
| !! | TATTCTTCTTTCAAAGAAAT+TGG | - | chr5_3:5155976-5155995 | Msa0793170:CDS | 20.0% |
| !!! | TTAAGAGAGTTATATTTTCT+TGG | + | chr5_3:5156801-5156820 | None:intergenic | 20.0% |
| !! | AAAATATAACTCTCTTAAAC+CGG | - | chr5_3:5156803-5156822 | Msa0793170:CDS | 20.0% |
| !! | AGTAACAAAAGTTTGAATAT+GGG | + | chr5_3:5157910-5157929 | None:intergenic | 20.0% |
| !!! | TCAATTTCATTTAAGATTGT+TGG | - | chr5_3:5158108-5158127 | Msa0793170:CDS | 20.0% |
| !!! | ATTATGTTTTAGTGTTCTTT+AGG | + | chr5_3:5158191-5158210 | None:intergenic | 20.0% |
| !!! | CCTAACATTAACTTTAATTT+AGG | + | chr5_3:5158258-5158277 | None:intergenic | 20.0% |
| !! | CCTAAATTAAAGTTAATGTT+AGG | - | chr5_3:5158255-5158274 | Msa0793170:CDS | 20.0% |
| !! | GATAATCTATGATCATTATT+TGG | + | chr5_3:5158362-5158381 | None:intergenic | 20.0% |
| !!! | TTTTTATTAGTTGTCTTTGT+GGG | - | chr5_3:5158736-5158755 | Msa0793170:intron | 20.0% |
| !! | TATGTGAAAAAAATTGTATC+AGG | + | chr5_3:5159106-5159125 | None:intergenic | 20.0% |
| !!! | TGATACAATTTTTTTCACAT+AGG | - | chr5_3:5159105-5159124 | Msa0793170:intron | 20.0% |
| !!! | TTAGATTTTGTTTTTAGAGT+TGG | - | chr5_3:5159192-5159211 | Msa0793170:intron | 20.0% |
| ! | AATTCATATCTCTCTCTTTA+TGG | - | chr5_3:5153837-5153856 | Msa0793170:three_prime_UTR | 25.0% |
| ! | AGAATAAAAAAGGAAGAGAA+AGG | + | chr5_3:5153955-5153974 | None:intergenic | 25.0% |
| !! | TTTGACCATTTTCTTTTTCT+TGG | - | chr5_3:5154139-5154158 | Msa0793170:CDS | 25.0% |
| !! | CAAGAAAAATGTTACCTTTT+TGG | + | chr5_3:5154225-5154244 | None:intergenic | 25.0% |
| ! | ATATGAAAACATGGAATCAA+GGG | + | chr5_3:5154250-5154269 | None:intergenic | 25.0% |
| ! | AACACAGAAGAAAAAAAAAG+GGG | + | chr5_3:5154288-5154307 | None:intergenic | 25.0% |
| ! | ATCTATGAGTAAAATGAACA+TGG | + | chr5_3:5154505-5154524 | None:intergenic | 25.0% |
| ! | AACAAGTGCAATGAATAAAA+AGG | + | chr5_3:5154556-5154575 | None:intergenic | 25.0% |
| ! | AAAAACCATCAAGACAAAAT+AGG | + | chr5_3:5154682-5154701 | None:intergenic | 25.0% |
| !!! | TTTGTTTTCTTTTCTGTCAT+AGG | - | chr5_3:5154701-5154720 | Msa0793170:intron | 25.0% |
| !!! | TTAAAGTGTCAAGATTTTGA+AGG | + | chr5_3:5154768-5154787 | None:intergenic | 25.0% |
| ! | CAGTTTCAAAGTTAGATTAT+CGG | + | chr5_3:5155157-5155176 | None:intergenic | 25.0% |
| ! | TGCAAAATGTAACTAATACA+AGG | + | chr5_3:5155192-5155211 | None:intergenic | 25.0% |
| !!! | AGACTCAAAATTCTAAAATG+CGG | - | chr5_3:5155258-5155277 | Msa0793170:intron | 25.0% |
| ! | AGAATTAATGAGAAGATCAA+AGG | - | chr5_3:5155937-5155956 | Msa0793170:intron | 25.0% |
| ! | TTTAACAATTGAGCTTAAAG+CGG | - | chr5_3:5157333-5157352 | Msa0793170:CDS | 25.0% |
| !! | TTCCTATAAAAGTGCATATA+TGG | - | chr5_3:5157607-5157626 | Msa0793170:CDS | 25.0% |
| !! | TCCTATAAAAGTGCATATAT+GGG | - | chr5_3:5157608-5157627 | Msa0793170:CDS | 25.0% |
| ! | TTCATATATATCGAGACTTA+TGG | + | chr5_3:5157660-5157679 | None:intergenic | 25.0% |
| ! | TAGTATTTAAGTGCGAAAAT+GGG | + | chr5_3:5157843-5157862 | None:intergenic | 25.0% |
| ! | TTAGTATTTAAGTGCGAAAA+TGG | + | chr5_3:5157844-5157863 | None:intergenic | 25.0% |
| ! | TTTGAATATGGGTGAAAAAA+TGG | + | chr5_3:5157899-5157918 | None:intergenic | 25.0% |
| ! | CAGTAACAAAAGTTTGAATA+TGG | + | chr5_3:5157911-5157930 | None:intergenic | 25.0% |
| !!! | CTTATGTCCTATTTTTTTCA+AGG | - | chr5_3:5157981-5158000 | Msa0793170:intron | 25.0% |
| ! | CATCATTCCTTGAAAAAAAT+AGG | + | chr5_3:5157991-5158010 | None:intergenic | 25.0% |
| ! | TTAGAATCTATGATGAGTAT+TGG | + | chr5_3:5158022-5158041 | None:intergenic | 25.0% |
| !!! | TAGTCGATCATTTTGTTTAT+TGG | + | chr5_3:5158085-5158104 | None:intergenic | 25.0% |
| !! | TTGTGATATGATTTAGAACT+AGG | - | chr5_3:5158294-5158313 | Msa0793170:exon | 25.0% |
| !!! | GTAGTTTATTGACTCATAAA+AGG | + | chr5_3:5158323-5158342 | None:intergenic | 25.0% |
| ! | TTTATGAGTCAATAAACTAC+TGG | - | chr5_3:5158323-5158342 | Msa0793170:five_prime_UTR | 25.0% |
| ! | GATCATTATTTGGTTATATC+TGG | + | chr5_3:5158352-5158371 | None:intergenic | 25.0% |
| ! | ATTTGATCATAGAGATTATC+CGG | + | chr5_3:5158515-5158534 | None:intergenic | 25.0% |
| ! | AAATAAAATTATGGGATTGG+TGG | + | chr5_3:5158559-5158578 | None:intergenic | 25.0% |
| !! | GTTTTTATTAGTTGTCTTTG+TGG | - | chr5_3:5158735-5158754 | Msa0793170:intron | 25.0% |
| !! | TTTTATTAGTTGTCTTTGTG+GGG | - | chr5_3:5158737-5158756 | Msa0793170:intron | 25.0% |
| ! | ATGATTAATTTGAACGAACG+AGG | + | chr5_3:5153784-5153803 | None:intergenic | 30.0% |
| CAAGTCCAAGAAAAAGAAAA+TGG | + | chr5_3:5154147-5154166 | None:intergenic | 30.0% | |
| !! | GGACTTGTTTATTGTTTTCT+AGG | - | chr5_3:5154160-5154179 | Msa0793170:CDS | 30.0% |
| AGACAAAATCGAATCCAAAA+AGG | - | chr5_3:5154208-5154227 | Msa0793170:CDS | 30.0% | |
| CATATGAAAACATGGAATCA+AGG | + | chr5_3:5154251-5154270 | None:intergenic | 30.0% | |
| ACACAGAAGAAAAAAAAAGG+GGG | + | chr5_3:5154287-5154306 | None:intergenic | 30.0% | |
| GAATAATCTTAGGCATAACA+TGG | - | chr5_3:5154530-5154549 | Msa0793170:intron | 30.0% | |
| ! | GTAATCCTATTTTGTCTTGA+TGG | - | chr5_3:5154674-5154693 | Msa0793170:intron | 30.0% |
| ! | TTTCTTTTCTGTCATAGGTT+TGG | - | chr5_3:5154706-5154725 | Msa0793170:intron | 30.0% |
| !! | TCAAGATTTTGAAGGATTGA+AGG | + | chr5_3:5154760-5154779 | None:intergenic | 30.0% |
| GAAAAAGAATAGCTTCTTCA+TGG | + | chr5_3:5154825-5154844 | None:intergenic | 30.0% | |
| ! | GAATGCTCAAATTGATGATA+CGG | + | chr5_3:5155121-5155140 | None:intergenic | 30.0% |
| !!! | GCATTTTAGAATTTTGAGTC+TGG | + | chr5_3:5155259-5155278 | None:intergenic | 30.0% |
| !! | GACTCAAAATTCTAAAATGC+GGG | - | chr5_3:5155259-5155278 | Msa0793170:intron | 30.0% |
| !!! | ACATTTTTTGCAAGAGTTCT+TGG | + | chr5_3:5155668-5155687 | None:intergenic | 30.0% |
| TTGCAAAAAATGTCATTGAG+AGG | - | chr5_3:5155675-5155694 | Msa0793170:CDS | 30.0% | |
| TAGATATCTTCGATTGTGAT+TGG | + | chr5_3:5155758-5155777 | None:intergenic | 30.0% | |
| ATCTATGCTAGATCATTGAA+TGG | - | chr5_3:5155773-5155792 | Msa0793170:CDS | 30.0% | |
| ! | TCTTCCAATGAATAGCTTTT+CGG | + | chr5_3:5155830-5155849 | None:intergenic | 30.0% |
| TATCCATTGGACATTCTATA+AGG | + | chr5_3:5155854-5155873 | None:intergenic | 30.0% | |
| !!! | GAAAACTTTTTTCCTGACTA+TGG | - | chr5_3:5156004-5156023 | Msa0793170:CDS | 30.0% |
| TAGAAGTTTCAACCCATATA+AGG | - | chr5_3:5156092-5156111 | Msa0793170:CDS | 30.0% | |
| TACACAATTAAGTTCTTCCT+TGG | + | chr5_3:5156143-5156162 | None:intergenic | 30.0% | |
| TAATTGTGTAAAGACAGAAC+TGG | - | chr5_3:5156153-5156172 | Msa0793170:CDS | 30.0% | |
| AGTAAGGCAGAAAAAATGAA+AGG | - | chr5_3:5156433-5156452 | Msa0793170:CDS | 30.0% | |
| GTAAGGCAGAAAAAATGAAA+GGG | - | chr5_3:5156434-5156453 | Msa0793170:CDS | 30.0% | |
| TAAGGCAGAAAAAATGAAAG+GGG | - | chr5_3:5156435-5156454 | Msa0793170:CDS | 30.0% | |
| TCTCTTCAAAATTTCTTCGA+AGG | + | chr5_3:5156534-5156553 | None:intergenic | 30.0% | |
| !! | TCGAAGAAATTTTGAAGAGA+AGG | - | chr5_3:5156534-5156553 | Msa0793170:CDS | 30.0% |
| !! | AAATTTTGAAGAGAAGGAGA+AGG | - | chr5_3:5156540-5156559 | Msa0793170:CDS | 30.0% |
| ACAATAATAGGATTACGAGA+TGG | - | chr5_3:5156625-5156644 | Msa0793170:CDS | 30.0% | |
| CAATAATAGGATTACGAGAT+GGG | - | chr5_3:5156626-5156645 | Msa0793170:CDS | 30.0% | |
| AATAGAATCAGTCTTGAGAA+GGG | - | chr5_3:5156738-5156757 | Msa0793170:CDS | 30.0% | |
| ATACTTGTGTTCAAAGTTAC+TGG | - | chr5_3:5156939-5156958 | Msa0793170:CDS | 30.0% | |
| AAAGAGAATGGACAGATTAT+TGG | - | chr5_3:5156970-5156989 | Msa0793170:CDS | 30.0% | |
| AATGGACAGATTATTGGAAA+TGG | - | chr5_3:5156976-5156995 | Msa0793170:CDS | 30.0% | |
| ATGGACAGATTATTGGAAAT+GGG | - | chr5_3:5156977-5156996 | Msa0793170:CDS | 30.0% | |
| ! | GAATCTGAAACCAAAATTCA+TGG | - | chr5_3:5157021-5157040 | Msa0793170:CDS | 30.0% |
| !! | ACTTTTGAGTCCATGAATTT+TGG | + | chr5_3:5157034-5157053 | None:intergenic | 30.0% |
| AAAATTCATGGACTCAAAAG+TGG | - | chr5_3:5157033-5157052 | Msa0793170:CDS | 30.0% | |
| ! | GACTTTTCTTTCAACAAAGA+AGG | + | chr5_3:5157093-5157112 | None:intergenic | 30.0% |
| ATTGAATAATCAATCGTCAG+AGG | - | chr5_3:5157149-5157168 | Msa0793170:CDS | 30.0% | |
| AAATGACATACTTAGATCTG+AGG | - | chr5_3:5157450-5157469 | Msa0793170:CDS | 30.0% | |
| ! | TATCCTTTTCTAACAATGCA+CGG | + | chr5_3:5157585-5157604 | None:intergenic | 30.0% |
| ! | ACCCATATATGCACTTTTAT+AGG | + | chr5_3:5157612-5157631 | None:intergenic | 30.0% |
| ! | ATAAAAGTGCATATATGGGT+AGG | - | chr5_3:5157612-5157631 | Msa0793170:CDS | 30.0% |
| AACACTAAAACATAATGCCA+CGG | - | chr5_3:5158195-5158214 | Msa0793170:CDS | 30.0% | |
| ! | ACTTTAATTTAGGCCTCTAT+GGG | + | chr5_3:5158248-5158267 | None:intergenic | 30.0% |
| ! | AACTTTAATTTAGGCCTCTA+TGG | + | chr5_3:5158249-5158268 | None:intergenic | 30.0% |
| TTTGATCATAGAGATTATCC+GGG | + | chr5_3:5158514-5158533 | None:intergenic | 30.0% | |
| TTTGTCGAATCTCTATGATA+TGG | + | chr5_3:5158637-5158656 | None:intergenic | 30.0% | |
| !!! | GATTCGACAAAGTTTTAAGT+TGG | - | chr5_3:5158646-5158665 | Msa0793170:intron | 30.0% |
| GAAAGTGAAACAAATTAGTG+AGG | - | chr5_3:5158943-5158962 | Msa0793170:intron | 30.0% | |
| TGATACCGATATACTCATTA+AGG | - | chr5_3:5159021-5159040 | Msa0793170:intron | 30.0% | |
| ACCTTCCTTAATGAGTATAT+CGG | + | chr5_3:5159029-5159048 | None:intergenic | 30.0% | |
| TCAAATATCAATGTTGCAAG+AGG | - | chr5_3:5159048-5159067 | Msa0793170:intron | 30.0% | |
| ! | CTTTTCATAATCTGTTTCAC+AGG | - | chr5_3:5159219-5159238 | Msa0793170:intron | 30.0% |
| AGGACAAAGAAGTAAAAGAA+AGG | - | chr5_3:5159239-5159258 | Msa0793170:intron | 30.0% | |
| ! | GTGACTCACAAGCATTTTAA+CGG | + | chr5_3:5154071-5154090 | None:intergenic | 35.0% |
| TAGATGCTGCGAATAATCTT+AGG | - | chr5_3:5154520-5154539 | Msa0793170:intron | 35.0% | |
| GATTACACAAACAAGCACAA+TGG | + | chr5_3:5154660-5154679 | None:intergenic | 35.0% | |
| !! | ACCTGAGCTATTTTCAGTTT+AGG | - | chr5_3:5154733-5154752 | Msa0793170:intron | 35.0% |
| ACCTAAACTGAAAATAGCTC+AGG | + | chr5_3:5154737-5154756 | None:intergenic | 35.0% | |
| TTGACACTTTAATGAGCTTG+TGG | - | chr5_3:5154776-5154795 | Msa0793170:intron | 35.0% | |
| ! | AGCAACTTGCTTTCTAGATT+TGG | + | chr5_3:5154984-5155003 | None:intergenic | 35.0% |
| TCATCAATTTGAGCATTCGT+TGG | - | chr5_3:5155123-5155142 | Msa0793170:intron | 35.0% | |
| CATCAATTTGAGCATTCGTT+GGG | - | chr5_3:5155124-5155143 | Msa0793170:intron | 35.0% | |
| ATCAATTTGAGCATTCGTTG+GGG | - | chr5_3:5155125-5155144 | Msa0793170:intron | 35.0% | |
| !!! | AATTTTGGCTGTACTTTCTG+TGG | - | chr5_3:5155218-5155237 | Msa0793170:intron | 35.0% |
| !! | AAAATTCTAAAATGCGGGAC+AGG | - | chr5_3:5155264-5155283 | Msa0793170:intron | 35.0% |
| TTGTGGATCGTTACATTGAT+GGG | - | chr5_3:5155414-5155433 | Msa0793170:intron | 35.0% | |
| ! | GTTGTATGTTGAACTTTTGG+TGG | + | chr5_3:5155521-5155540 | None:intergenic | 35.0% |
| !! | GGTGTTGTATGTTGAACTTT+TGG | + | chr5_3:5155524-5155543 | None:intergenic | 35.0% |
| TTGTCTTTGACTCCATTAGT+TGG | + | chr5_3:5155554-5155573 | None:intergenic | 35.0% | |
| GAACCTTATAGAATGTCCAA+TGG | - | chr5_3:5155848-5155867 | Msa0793170:intron | 35.0% | |
| AATGGATATCATGACATGGA+CGG | - | chr5_3:5155866-5155885 | Msa0793170:intron | 35.0% | |
| ! | AGCAATTTGGGACCTTATAT+GGG | + | chr5_3:5156107-5156126 | None:intergenic | 35.0% |
| TAAAGACAGAACTGGAGATT+CGG | - | chr5_3:5156161-5156180 | Msa0793170:CDS | 35.0% | |
| ! | AAGTTTCCTCTTTTAGTGAG+AGG | - | chr5_3:5156353-5156372 | Msa0793170:CDS | 35.0% |
| ! | AGTTTCCTCTTTTAGTGAGA+GGG | - | chr5_3:5156354-5156373 | Msa0793170:CDS | 35.0% |
| AAAAATGAAAGGGGAGATTC+TGG | - | chr5_3:5156444-5156463 | Msa0793170:CDS | 35.0% | |
| AAAATGAAAGGGGAGATTCT+GGG | - | chr5_3:5156445-5156464 | Msa0793170:CDS | 35.0% | |
| !! | ATCTGTCTTGTAGTTCTAAG+AGG | + | chr5_3:5156483-5156502 | None:intergenic | 35.0% |
| CAAGATAGCTGAAGAAAACA+GGG | - | chr5_3:5156504-5156523 | Msa0793170:CDS | 35.0% | |
| GAGCAAGAGAAGACAATAAT+AGG | - | chr5_3:5156613-5156632 | Msa0793170:CDS | 35.0% | |
| ! | CAACAGACTGGTTCTTATTA+AGG | + | chr5_3:5156663-5156682 | None:intergenic | 35.0% |
| GAATAGAATCAGTCTTGAGA+AGG | - | chr5_3:5156737-5156756 | Msa0793170:CDS | 35.0% | |
| TGCCTTCATTTAGCATTGTT+AGG | + | chr5_3:5156918-5156937 | None:intergenic | 35.0% | |
| !! | ATTATTGGAAATGGGTTAGC+TGG | - | chr5_3:5156985-5157004 | Msa0793170:CDS | 35.0% |
| !! | CATCATGCTGTTTCTTGTAT+AGG | - | chr5_3:5157306-5157325 | Msa0793170:CDS | 35.0% |
| TTTCTAACAATGCACGGAAT+AGG | + | chr5_3:5157579-5157598 | None:intergenic | 35.0% | |
| ATTCCGTGCATTGTTAGAAA+AGG | - | chr5_3:5157579-5157598 | Msa0793170:CDS | 35.0% | |
| AGTGAATTTCAATGATCTGC+TGG | + | chr5_3:5157712-5157731 | None:intergenic | 35.0% | |
| TAAACTATATAACCAGCAGC+AGG | - | chr5_3:5157732-5157751 | Msa0793170:CDS | 35.0% | |
| TAAGTGCGAAAATGGGAATT+AGG | + | chr5_3:5157836-5157855 | None:intergenic | 35.0% | |
| GTCGTGAAATTAAAGTAGGT+TGG | + | chr5_3:5158139-5158158 | None:intergenic | 35.0% | |
| ACACTAAAACATAATGCCAC+GGG | - | chr5_3:5158196-5158215 | Msa0793170:CDS | 35.0% | |
| !! | GGTTTCTTGTGCTTTTTACA+CGG | + | chr5_3:5158466-5158485 | None:intergenic | 35.0% |
| TTTCGTTCATATAGGATTGG+TGG | + | chr5_3:5158487-5158506 | None:intergenic | 35.0% | |
| ACCAATCCTATATGAACGAA+AGG | - | chr5_3:5158486-5158505 | Msa0793170:intron | 35.0% | |
| ACCTTTCGTTCATATAGGAT+TGG | + | chr5_3:5158490-5158509 | None:intergenic | 35.0% | |
| ACAGTATAAACTGCCTTCAA+CGG | - | chr5_3:5158837-5158856 | Msa0793170:intron | 35.0% | |
| AAGGGAGTTATCAATCATGA+GGG | - | chr5_3:5158877-5158896 | Msa0793170:intron | 35.0% | |
| ACCGATATACTCATTAAGGA+AGG | - | chr5_3:5159025-5159044 | Msa0793170:intron | 35.0% | |
| CACTCATATATGTGAATGAG+TGG | - | chr5_3:5159153-5159172 | Msa0793170:intron | 35.0% | |
| ! | AATCTCTCGCTAGCTTCAAT+TGG | - | chr5_3:5154107-5154126 | Msa0793170:CDS | 40.0% |
| TTCTCTGATGTAGTAGCTTG+TGG | - | chr5_3:5154468-5154487 | Msa0793170:intron | 40.0% | |
| TAGCGGTGGAAGCAATAATT+TGG | - | chr5_3:5154859-5154878 | Msa0793170:intron | 40.0% | |
| !! | TGCTCATTTGTTGACTTTGG+AGG | + | chr5_3:5154887-5154906 | None:intergenic | 40.0% |
| !! | GACTGCTCATTTGTTGACTT+TGG | + | chr5_3:5154890-5154909 | None:intergenic | 40.0% |
| AGTCAACAAATGAGCAGTCT+TGG | - | chr5_3:5154891-5154910 | Msa0793170:intron | 40.0% | |
| GTCAACAAATGAGCAGTCTT+GGG | - | chr5_3:5154892-5154911 | Msa0793170:intron | 40.0% | |
| !!! | TGGGAGGTTTTTTCAGATAG+TGG | - | chr5_3:5154911-5154930 | Msa0793170:intron | 40.0% |
| GGAGTGAATAATCAAGCTCA+TGG | - | chr5_3:5154932-5154951 | Msa0793170:intron | 40.0% | |
| GATAACCAAAGTTCAAGTGC+TGG | - | chr5_3:5155004-5155023 | Msa0793170:intron | 40.0% | |
| ATCTAGTTGGATCTTTGACC+TGG | + | chr5_3:5155072-5155091 | None:intergenic | 40.0% | |
| CTACTTGTAGGAGATCTAGT+TGG | + | chr5_3:5155085-5155104 | None:intergenic | 40.0% | |
| ! | TCACTAGCAATGCTACTTGT+AGG | + | chr5_3:5155097-5155116 | None:intergenic | 40.0% |
| AGATCACATCATGAGTCATC+TGG | - | chr5_3:5155356-5155375 | Msa0793170:intron | 40.0% | |
| GATCACATCATGAGTCATCT+GGG | - | chr5_3:5155357-5155376 | Msa0793170:intron | 40.0% | |
| TTCTAGCAACGTTTCAAGCA+TGG | - | chr5_3:5155391-5155410 | Msa0793170:intron | 40.0% | |
| GTTGTGGATCGTTACATTGA+TGG | - | chr5_3:5155413-5155432 | Msa0793170:intron | 40.0% | |
| TGTGGATCGTTACATTGATG+GGG | - | chr5_3:5155415-5155434 | Msa0793170:intron | 40.0% | |
| TTTGGTGGAAGATTCATGCA+AGG | + | chr5_3:5155506-5155525 | None:intergenic | 40.0% | |
| ACACCTAATTCGCCAACTAA+TGG | - | chr5_3:5155539-5155558 | Msa0793170:intron | 40.0% | |
| ACTCCATTAGTTGGCGAATT+AGG | + | chr5_3:5155545-5155564 | None:intergenic | 40.0% | |
| ATGGAGTCAAAGACAAACCT+AGG | - | chr5_3:5155558-5155577 | Msa0793170:intron | 40.0% | |
| TGGAGTCAAAGACAAACCTA+GGG | - | chr5_3:5155559-5155578 | Msa0793170:intron | 40.0% | |
| TCTCTAAATGAATGAGCCCT+AGG | + | chr5_3:5155578-5155597 | None:intergenic | 40.0% | |
| ATTGGACAGACAATGGGTAT+GGG | - | chr5_3:5155633-5155652 | Msa0793170:CDS | 40.0% | |
| TCCACCGAAAAGCTATTCAT+TGG | - | chr5_3:5155823-5155842 | Msa0793170:intron | 40.0% | |
| ! | TCCAATGAATAGCTTTTCGG+TGG | + | chr5_3:5155827-5155846 | None:intergenic | 40.0% |
| GTCCAATGGATATCATGACA+TGG | - | chr5_3:5155862-5155881 | Msa0793170:intron | 40.0% | |
| GTCCATGTCATGATATCCAT+TGG | + | chr5_3:5155867-5155886 | None:intergenic | 40.0% | |
| AAGCTATGATGAACCTGAAG+AGG | - | chr5_3:5155904-5155923 | Msa0793170:intron | 40.0% | |
| !! | AGCCAAGCTTATTTTCTCCT+CGG | + | chr5_3:5156071-5156090 | None:intergenic | 40.0% |
| ! | CAGCAATTTGGGACCTTATA+TGG | + | chr5_3:5156108-5156127 | None:intergenic | 40.0% |
| AGATGCTCTGTCAGCAATTT+GGG | + | chr5_3:5156119-5156138 | None:intergenic | 40.0% | |
| TGTTTCCCTCTCACTAAAAG+AGG | + | chr5_3:5156362-5156381 | None:intergenic | 40.0% | |
| GCAAGATAGCTGAAGAAAAC+AGG | - | chr5_3:5156503-5156522 | Msa0793170:CDS | 40.0% | |
| TATCAATGCTCTCAACAGAC+TGG | + | chr5_3:5156675-5156694 | None:intergenic | 40.0% | |
| GCACATCAAGAAAATGCAGA+TGG | - | chr5_3:5156696-5156715 | Msa0793170:CDS | 40.0% | |
| GTTGGAATCACACAAGTTTG+AGG | - | chr5_3:5156762-5156781 | Msa0793170:CDS | 40.0% | |
| ACTCTCTTAAACCGGTTGAA+AGG | - | chr5_3:5156811-5156830 | Msa0793170:CDS | 40.0% | |
| TTAAACCGGTTGAAAGGTGA+TGG | - | chr5_3:5156817-5156836 | Msa0793170:CDS | 40.0% | |
| TTGTTAGGCCTTGATTCTGA+AGG | + | chr5_3:5156903-5156922 | None:intergenic | 40.0% | |
| GGCCTAACAATGCTAAATGA+AGG | - | chr5_3:5156913-5156932 | Msa0793170:CDS | 40.0% | |
| CTGGAACTCGTTAAAGAGAA+TGG | - | chr5_3:5156958-5156977 | Msa0793170:CDS | 40.0% | |
| !! | TGAACTTGCTACAGCAGTAA+GGG | - | chr5_3:5157426-5157445 | Msa0793170:CDS | 40.0% |
| GTTGAAGAACCTTGAACTTC+AGG | - | chr5_3:5157513-5157532 | Msa0793170:CDS | 40.0% | |
| !!! | CAGCAGGTTTTAGAGTGATT+TGG | - | chr5_3:5157748-5157767 | Msa0793170:CDS | 40.0% |
| TGGGTGAAAAAATGGTGAAG+TGG | + | chr5_3:5157891-5157910 | None:intergenic | 40.0% | |
| TAGCAGGCTTGAGAAAGATT+TGG | - | chr5_3:5158054-5158073 | Msa0793170:CDS | 40.0% | |
| CCTCGTCGTGAAATTAAAGT+AGG | + | chr5_3:5158143-5158162 | None:intergenic | 40.0% | |
| ! | CCTACTTTAATTTCACGACG+AGG | - | chr5_3:5158140-5158159 | Msa0793170:CDS | 40.0% |
| GTGTTCTTTAGGTGCAATGA+TGG | + | chr5_3:5158180-5158199 | None:intergenic | 40.0% | |
| ATGTCATGTCTCATGGTTTC+TGG | + | chr5_3:5158406-5158425 | None:intergenic | 40.0% | |
| AACCATGAGACATGACATCT+CGG | - | chr5_3:5158408-5158427 | Msa0793170:intron | 40.0% | |
| CTATATGAACGAAAGGTTCC+CGG | - | chr5_3:5158493-5158512 | Msa0793170:intron | 40.0% | |
| !!! | AAGTTTTAAGTTGGCAGTCG+AGG | - | chr5_3:5158655-5158674 | Msa0793170:intron | 40.0% |
| CTTATCCCACTAAAAGGAGA+GGG | + | chr5_3:5158691-5158710 | None:intergenic | 40.0% | |
| TCTTATCCCACTAAAAGGAG+AGG | + | chr5_3:5158692-5158711 | None:intergenic | 40.0% | |
| ! | CCAAGTCTTATCCCACTAAA+AGG | + | chr5_3:5158697-5158716 | None:intergenic | 40.0% |
| ! | CCTTTTAGTGGGATAAGACT+TGG | - | chr5_3:5158694-5158713 | Msa0793170:intron | 40.0% |
| CAGTATAAACTGCCTTCAAC+GGG | - | chr5_3:5158838-5158857 | Msa0793170:intron | 40.0% | |
| GGATCTTCAAGAGTCTACAA+GGG | - | chr5_3:5158859-5158878 | Msa0793170:intron | 40.0% | |
| CAAGGGAGTTATCAATCATG+AGG | - | chr5_3:5158876-5158895 | Msa0793170:intron | 40.0% | |
| AGGGAGTTATCAATCATGAG+GGG | - | chr5_3:5158878-5158897 | Msa0793170:intron | 40.0% | |
| !! | AATGTTGCCAAAAGTGTCAG+AGG | - | chr5_3:5158901-5158920 | Msa0793170:intron | 40.0% |
| CTCAGAGATCGAAATGCTAA+AGG | - | chr5_3:5158982-5159001 | Msa0793170:intron | 40.0% | |
| ACAAAAGACCCTGTCTCTAT+GGG | - | chr5_3:5159077-5159096 | Msa0793170:intron | 40.0% | |
| CTTTAATGAGCTTGTGGCAG+CGG | - | chr5_3:5154782-5154801 | Msa0793170:intron | 45.0% | |
| TTCAGATCGTCTGCATCTAG+CGG | - | chr5_3:5154842-5154861 | Msa0793170:intron | 45.0% | |
| AACAAATGAGCAGTCTTGGG+AGG | - | chr5_3:5154895-5154914 | Msa0793170:intron | 45.0% | |
| TCAAGCTCATGGCAAAAGTG+AGG | - | chr5_3:5154943-5154962 | Msa0793170:intron | 45.0% | |
| TCATGGCAAAAGTGAGGACA+AGG | - | chr5_3:5154949-5154968 | Msa0793170:intron | 45.0% | |
| CATGGCAAAAGTGAGGACAA+GGG | - | chr5_3:5154950-5154969 | Msa0793170:intron | 45.0% | |
| TTGGACCAGCACTTGAACTT+TGG | + | chr5_3:5155012-5155031 | None:intergenic | 45.0% | |
| ACATTGACCTGCTCCTTCTA+AGG | + | chr5_3:5155036-5155055 | None:intergenic | 45.0% | |
| AGTTGGATCTTTGACCTGGA+AGG | + | chr5_3:5155068-5155087 | None:intergenic | 45.0% | |
| GATCTTGAAGAACTGCTAGC+AGG | + | chr5_3:5155341-5155360 | None:intergenic | 45.0% | |
| CAACGTTTCAAGCATGGTTG+TGG | - | chr5_3:5155397-5155416 | Msa0793170:intron | 45.0% | |
| TTCGTTCCTCATCCCAAGAT+TGG | - | chr5_3:5155615-5155634 | Msa0793170:CDS | 45.0% | |
| TCCCAAGATTGGACAGACAA+TGG | - | chr5_3:5155626-5155645 | Msa0793170:CDS | 45.0% | |
| CCCATTGTCTGTCCAATCTT+GGG | + | chr5_3:5155630-5155649 | None:intergenic | 45.0% | |
| CCCAAGATTGGACAGACAAT+GGG | - | chr5_3:5155627-5155646 | Msa0793170:CDS | 45.0% | |
| ACCCATTGTCTGTCCAATCT+TGG | + | chr5_3:5155631-5155650 | None:intergenic | 45.0% | |
| GATTGGACAGACAATGGGTA+TGG | - | chr5_3:5155632-5155651 | Msa0793170:CDS | 45.0% | |
| ATGACATGGACGGTAATTGC+AGG | - | chr5_3:5155876-5155895 | Msa0793170:intron | 45.0% | |
| TGACATGGACGGTAATTGCA+GGG | - | chr5_3:5155877-5155896 | Msa0793170:intron | 45.0% | |
| TCTGCATCAAGATCCTCTTC+AGG | + | chr5_3:5155920-5155939 | None:intergenic | 45.0% | |
| GAGAAGATCAAAGGAAGCTG+AGG | - | chr5_3:5155946-5155965 | Msa0793170:intron | 45.0% | |
| GTCACGTCATAACCATAGTC+AGG | + | chr5_3:5156019-5156038 | None:intergenic | 45.0% | |
| !! | AGCTTATTTTCTCCTCGGCT+AGG | + | chr5_3:5156066-5156085 | None:intergenic | 45.0% |
| AGCCGAGGAGAAAATAAGCT+TGG | - | chr5_3:5156066-5156085 | Msa0793170:CDS | 45.0% | |
| CAGATGCTCTGTCAGCAATT+TGG | + | chr5_3:5156120-5156139 | None:intergenic | 45.0% | |
| GAATGAGATGCAGTCAGCAT+TGG | - | chr5_3:5156207-5156226 | Msa0793170:CDS | 45.0% | |
| ! | GTCAGCATTGGAGAAGGAAT+TGG | - | chr5_3:5156219-5156238 | Msa0793170:CDS | 45.0% |
| CATTGGAGAAGGAATTGGAC+AGG | - | chr5_3:5156224-5156243 | Msa0793170:CDS | 45.0% | |
| AGTACCAGTCAGAAGAGCAA+AGG | - | chr5_3:5156278-5156297 | Msa0793170:CDS | 45.0% | |
| ACATACTGACCAACAGCTCA+AGG | - | chr5_3:5156402-5156421 | Msa0793170:CDS | 45.0% | |
| TAGTCAACACCTTGAGCTGT+TGG | + | chr5_3:5156414-5156433 | None:intergenic | 45.0% | |
| !! | GCTCAAGGTGTTGACTAGTA+AGG | - | chr5_3:5156417-5156436 | Msa0793170:CDS | 45.0% |
| AAATGCAGATGGAGCTGATG+AGG | - | chr5_3:5156707-5156726 | Msa0793170:CDS | 45.0% | |
| GATGGAGCTGATGAGGTTAA+CGG | - | chr5_3:5156714-5156733 | Msa0793170:CDS | 45.0% | |
| ATGGAGCTGATGAGGTTAAC+GGG | - | chr5_3:5156715-5156734 | Msa0793170:CDS | 45.0% | |
| ATCAGTCTTGAGAAGGGAGT+TGG | - | chr5_3:5156744-5156763 | Msa0793170:CDS | 45.0% | |
| GGAATCACACAAGTTTGAGG+AGG | - | chr5_3:5156765-5156784 | Msa0793170:CDS | 45.0% | |
| CTTTGCCATCACCTTTCAAC+CGG | + | chr5_3:5156825-5156844 | None:intergenic | 45.0% | |
| TAGACAAAGAACTATGCGCC+CGG | - | chr5_3:5156869-5156888 | Msa0793170:CDS | 45.0% | |
| ATCTGCTGCCTTCAGAATCA+AGG | - | chr5_3:5156892-5156911 | Msa0793170:CDS | 45.0% | |
| TGGACTCAAAAGTGGAACTG+AGG | - | chr5_3:5157041-5157060 | Msa0793170:CDS | 45.0% | |
| GGACTCAAAAGTGGAACTGA+GGG | - | chr5_3:5157042-5157061 | Msa0793170:CDS | 45.0% | |
| GACTCAAAAGTGGAACTGAG+GGG | - | chr5_3:5157043-5157062 | Msa0793170:CDS | 45.0% | |
| TGAGCTTAAAGCGGAACGTT+TGG | - | chr5_3:5157342-5157361 | Msa0793170:CDS | 45.0% | |
| CAGCTTGTATCTGCTCAACT+TGG | + | chr5_3:5157408-5157427 | None:intergenic | 45.0% | |
| !! | CTGAACTTGCTACAGCAGTA+AGG | - | chr5_3:5157425-5157444 | Msa0793170:CDS | 45.0% |
| !! | GAACTTGCTACAGCAGTAAG+GGG | - | chr5_3:5157427-5157446 | Msa0793170:CDS | 45.0% |
| !! | ATCACTCTAAAACCTGCTGC+TGG | + | chr5_3:5157747-5157766 | None:intergenic | 45.0% |
| CTAACCTTGTAACTGCTAGC+AGG | - | chr5_3:5158038-5158057 | Msa0793170:CDS | 45.0% | |
| GGCTTGAGAAAGATTTGGCA+CGG | - | chr5_3:5158059-5158078 | Msa0793170:CDS | 45.0% | |
| ! | CTTTAGGTGCAATGATGGTG+TGG | + | chr5_3:5158175-5158194 | None:intergenic | 45.0% |
| AAACATAATGCCACGGGCAA+TGG | - | chr5_3:5158202-5158221 | Msa0793170:CDS | 45.0% | |
| AACCGAGATGTCATGTCTCA+TGG | + | chr5_3:5158413-5158432 | None:intergenic | 45.0% | |
| ATGAGACATGACATCTCGGT+TGG | - | chr5_3:5158412-5158431 | Msa0793170:intron | 45.0% | |
| CGGGAACCTTTCGTTCATAT+AGG | + | chr5_3:5158495-5158514 | None:intergenic | 45.0% | |
| TGGTTTCTTGTACTCGTCGA+TGG | + | chr5_3:5158539-5158558 | None:intergenic | 45.0% | |
| ! | ACACAACCCTCTCCTTTTAG+TGG | - | chr5_3:5158682-5158701 | Msa0793170:intron | 45.0% |
| ! | CACAACCCTCTCCTTTTAGT+GGG | - | chr5_3:5158683-5158702 | Msa0793170:intron | 45.0% |
| ACTCTTGAAGATCCCGTTGA+AGG | + | chr5_3:5158853-5158872 | None:intergenic | 45.0% | |
| GGGATCTTCAAGAGTCTACA+AGG | - | chr5_3:5158858-5158877 | Msa0793170:intron | 45.0% | |
| AGAGGAGAGGGATAAGTTGT+GGG | - | chr5_3:5158919-5158938 | Msa0793170:five_prime_UTR | 45.0% | |
| GACAAAAGACCCTGTCTCTA+TGG | - | chr5_3:5159076-5159095 | Msa0793170:intron | 45.0% | |
| ! | GTGCTGGTCCAAACCTTAGA+AGG | - | chr5_3:5155020-5155039 | Msa0793170:intron | 50.0% |
| GTCCAAACCTTAGAAGGAGC+AGG | - | chr5_3:5155026-5155045 | Msa0793170:intron | 50.0% | |
| !! | GACCTGCTCCTTCTAAGGTT+TGG | + | chr5_3:5155031-5155050 | None:intergenic | 50.0% |
| AAGGAGCAGGTCAATGTCCT+CGG | - | chr5_3:5155039-5155058 | Msa0793170:intron | 50.0% | |
| GCAGACACTGCAGATTGTGT+TGG | + | chr5_3:5155290-5155309 | None:intergenic | 50.0% | |
| CTGCTGTCCAAAATTCCCAG+AGG | - | chr5_3:5155306-5155325 | Msa0793170:intron | 50.0% | |
| !! | TCTCGCACCTCTGGGAATTT+TGG | + | chr5_3:5155316-5155335 | None:intergenic | 50.0% |
| TGATGGGGAACAACAGCTAG+AGG | - | chr5_3:5155430-5155449 | Msa0793170:intron | 50.0% | |
| AGCTAGAGGAAAGTAGACCC+AGG | - | chr5_3:5155444-5155463 | Msa0793170:intron | 50.0% | |
| TTCCTCTGTGAACTGCTCCT+GGG | + | chr5_3:5155464-5155483 | None:intergenic | 50.0% | |
| ATTCCTCTGTGAACTGCTCC+TGG | + | chr5_3:5155465-5155484 | None:intergenic | 50.0% | |
| AGGAGCAGTTCACAGAGGAA+TGG | - | chr5_3:5155464-5155483 | Msa0793170:intron | 50.0% | |
| CAGAGGAATGGCAGTAGACA+TGG | - | chr5_3:5155476-5155495 | Msa0793170:intron | 50.0% | |
| CTTGGGATGAGGAACGAAGA+CGG | + | chr5_3:5155613-5155632 | None:intergenic | 50.0% | |
| GTCTGTCCAATCTTGGGATG+AGG | + | chr5_3:5155624-5155643 | None:intergenic | 50.0% | |
| GACATGGACGGTAATTGCAG+GGG | - | chr5_3:5155878-5155897 | Msa0793170:intron | 50.0% | |
| GACAATCAGAAACCTAGCCG+AGG | - | chr5_3:5156051-5156070 | Msa0793170:CDS | 50.0% | |
| ! | GATGCAGTCAGCATTGGAGA+AGG | - | chr5_3:5156213-5156232 | Msa0793170:CDS | 50.0% |
| TGGAGAAGGAATTGGACAGG+AGG | - | chr5_3:5156227-5156246 | Msa0793170:CDS | 50.0% | |
| GAAGCCTTTGCTCTTCTGAC+TGG | + | chr5_3:5156285-5156304 | None:intergenic | 50.0% | |
| ! | ATTCTGAAGGCAGCAGATCC+GGG | + | chr5_3:5156890-5156909 | None:intergenic | 50.0% |
| ! | GATTCTGAAGGCAGCAGATC+CGG | + | chr5_3:5156891-5156910 | None:intergenic | 50.0% |
| GTGGAACTGAGGGGTTAACA+AGG | - | chr5_3:5157052-5157071 | Msa0793170:CDS | 50.0% | |
| ACTCGTGAGACGCAGTTGAA+AGG | + | chr5_3:5157495-5157514 | None:intergenic | 50.0% | |
| GGTGACAGACCTGAAGTTCA+AGG | + | chr5_3:5157525-5157544 | None:intergenic | 50.0% | |
| CAAGCCTGCTAGCAGTTACA+AGG | + | chr5_3:5158045-5158064 | None:intergenic | 50.0% | |
| CTGCATGACAAAGCCCATAG+AGG | - | chr5_3:5158232-5158251 | Msa0793170:CDS | 50.0% | |
| CATGACATCTCGGTTGGCAT+TGG | - | chr5_3:5158418-5158437 | Msa0793170:intron | 50.0% | |
| !! | TGCCAAAAGTGTCAGAGGAG+AGG | - | chr5_3:5158906-5158925 | Msa0793170:five_prime_UTR | 50.0% |
| !! | GCCAAAAGTGTCAGAGGAGA+GGG | - | chr5_3:5158907-5158926 | Msa0793170:five_prime_UTR | 50.0% |
| ! | TCCCTCTCCTCTGACACTTT+TGG | + | chr5_3:5158911-5158930 | None:intergenic | 50.0% |
| CAGAGGAGAGGGATAAGTTG+TGG | - | chr5_3:5158918-5158937 | Msa0793170:five_prime_UTR | 50.0% | |
| TCAGGACTCCCATAGAGACA+GGG | + | chr5_3:5159088-5159107 | None:intergenic | 50.0% | |
| ATCAGGACTCCCATAGAGAC+AGG | + | chr5_3:5159089-5159108 | None:intergenic | 50.0% | |
| AGATCGTCTGCATCTAGCGG+TGG | - | chr5_3:5154845-5154864 | Msa0793170:intron | 55.0% | |
| AATGTCCTCGGCTTCCTTCC+AGG | - | chr5_3:5155051-5155070 | Msa0793170:intron | 55.0% | |
| TTTGACCTGGAAGGAAGCCG+AGG | + | chr5_3:5155059-5155078 | None:intergenic | 55.0% | |
| AGCAGGTTTCTCGCACCTCT+GGG | + | chr5_3:5155324-5155343 | None:intergenic | 55.0% | |
| TAGCAGGTTTCTCGCACCTC+TGG | + | chr5_3:5155325-5155344 | None:intergenic | 55.0% | |
| ! | TGCTGACAGAGCATCTGCCA+AGG | - | chr5_3:5156123-5156142 | Msa0793170:CDS | 55.0% |
| TGGACAGGAGGTCAAGTGAC+TGG | - | chr5_3:5156239-5156258 | Msa0793170:CDS | 55.0% | |
| ! | GGGCTTTGTCATGCAGCCAT+AGG | + | chr5_3:5158228-5158247 | None:intergenic | 55.0% |
| GACCCAGGAGCAGTTCACAG+AGG | - | chr5_3:5155459-5155478 | Msa0793170:intron | 60.0% | |
| ATGCCACGGGCAATGGCCTA+TGG | - | chr5_3:5158209-5158228 | Msa0793170:CDS | 60.0% | |
| CAGCCATAGGCCATTGCCCG+TGG | + | chr5_3:5158215-5158234 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 5153781 | 5159350 | 5153781 | ID=Msa0793170;Name=Msa0793170 |
| chr5_3 | mRNA | 5153781 | 5159350 | 5153781 | ID=Msa0793170-mRNA-1;Parent=Msa0793170;Name=Msa0793170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=227|1|1|1|0.6|0.5|6|224|917 |
| chr5_3 | exon | 5153781 | 5154310 | 5153781 | ID=Msa0793170-mRNA-1:exon:1982;Parent=Msa0793170-mRNA-1 |
| chr5_3 | exon | 5155597 | 5155803 | 5155597 | ID=Msa0793170-mRNA-1:exon:1981;Parent=Msa0793170-mRNA-1 |
| chr5_3 | exon | 5155961 | 5157878 | 5155961 | ID=Msa0793170-mRNA-1:exon:1980;Parent=Msa0793170-mRNA-1 |
| chr5_3 | exon | 5157985 | 5158408 | 5157985 | ID=Msa0793170-mRNA-1:exon:1979;Parent=Msa0793170-mRNA-1 |
| chr5_3 | exon | 5158902 | 5158949 | 5158902 | ID=Msa0793170-mRNA-1:exon:1978;Parent=Msa0793170-mRNA-1 |
| chr5_3 | exon | 5159273 | 5159350 | 5159273 | ID=Msa0793170-mRNA-1:exon:1977;Parent=Msa0793170-mRNA-1 |
| chr5_3 | five_prime_UTR | 5159273 | 5159350 | 5159273 | ID=Msa0793170-mRNA-1:five_prime_utr;Parent=Msa0793170-mRNA-1 |
| chr5_3 | five_prime_UTR | 5158902 | 5158949 | 5158902 | ID=Msa0793170-mRNA-1:five_prime_utr;Parent=Msa0793170-mRNA-1 |
| chr5_3 | five_prime_UTR | 5158308 | 5158408 | 5158308 | ID=Msa0793170-mRNA-1:five_prime_utr;Parent=Msa0793170-mRNA-1 |
| chr5_3 | CDS | 5157985 | 5158307 | 5157985 | ID=Msa0793170-mRNA-1:cds;Parent=Msa0793170-mRNA-1 |
| chr5_3 | CDS | 5155961 | 5157878 | 5155961 | ID=Msa0793170-mRNA-1:cds;Parent=Msa0793170-mRNA-1 |
| chr5_3 | CDS | 5155597 | 5155803 | 5155597 | ID=Msa0793170-mRNA-1:cds;Parent=Msa0793170-mRNA-1 |
| chr5_3 | CDS | 5154005 | 5154310 | 5154005 | ID=Msa0793170-mRNA-1:cds;Parent=Msa0793170-mRNA-1 |
| chr5_3 | three_prime_UTR | 5153781 | 5154004 | 5153781 | ID=Msa0793170-mRNA-1:three_prime_utr;Parent=Msa0793170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
