Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437860 | XP_003592787.1 | 98.366 | 918 | 14 | 1 | 1 | 917 | 1 | 918 | 0.0 | 1850 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437860 | G7IF22 | 98.366 | 918 | 14 | 1 | 1 | 917 | 1 | 918 | 0.0 | 1850 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045990 | Msa0437860 | 0.945689 | 1.907513e-104 | -8.615850e-47 |
| Msa0437860 | Msa0793170 | 0.953797 | 1.240405e-111 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437860 | MtrunA17_Chr1g0213221 | 98.366 | 918 | 14 | 1 | 1 | 917 | 1 | 918 | 0.0 | 1850 |
| Msa0437860 | MtrunA17_Chr5g0422951 | 62.011 | 179 | 21 | 3 | 443 | 619 | 156 | 289 | 3.81e-51 | 186 |
| Msa0437860 | MtrunA17_Chr5g0422951 | 55.147 | 136 | 49 | 6 | 352 | 476 | 278 | 412 | 2.26e-25 | 110 |
| Msa0437860 | MtrunA17_Chr4g0002081 | 32.487 | 197 | 68 | 4 | 704 | 900 | 95 | 226 | 9.82e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437860 | AT3G55060.2 | 46.253 | 934 | 443 | 14 | 1 | 914 | 1 | 895 | 0.0 | 678 |
| Msa0437860 | AT3G55060.1 | 46.253 | 934 | 443 | 14 | 1 | 914 | 1 | 895 | 0.0 | 678 |
| Msa0437860 | AT2G39300.1 | 42.473 | 930 | 415 | 21 | 1 | 912 | 1 | 828 | 0.0 | 606 |
| Msa0437860 | AT2G39300.2 | 42.473 | 930 | 415 | 21 | 1 | 912 | 1 | 828 | 0.0 | 606 |
| Msa0437860 | AT2G39300.4 | 42.473 | 930 | 415 | 21 | 1 | 912 | 1 | 828 | 0.0 | 606 |
| Msa0437860 | AT3G55060.3 | 46.420 | 838 | 391 | 13 | 1 | 819 | 1 | 799 | 0.0 | 605 |
| Msa0437860 | AT2G39300.3 | 42.237 | 921 | 396 | 22 | 1 | 912 | 1 | 794 | 0.0 | 595 |
Find 199 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCATATCTCTCTCTTTA+TGG | 0.095946 | 3_3:-1875067 | Msa0437860:intron |
| CAGCAATTTGGGACCTTATA+TGG | 0.121815 | 3_3:+1872800 | None:intergenic |
| TATTCTTCTTTCAAAGAAAT+TGG | 0.188162 | 3_3:-1872929 | Msa0437860:CDS |
| CAGATGCTCTGTCAGCAATT+TGG | 0.216808 | 3_3:+1872788 | None:intergenic |
| ACTCCATTAGTTGGCGAATT+AGG | 0.227948 | 3_3:+1873363 | None:intergenic |
| TCTCGCACCTCTGGGAATTT+TGG | 0.230603 | 3_3:+1873592 | None:intergenic |
| AGCAACTTGCTTTCTAGATT+TGG | 0.230610 | 3_3:+1873924 | None:intergenic |
| TTGGACCAGCACTTGAAATT+TGG | 0.243909 | 3_3:+1873896 | None:intergenic |
| AAAGAGAATGGACAGATTAT+TGG | 0.252349 | 3_3:-1871935 | Msa0437860:CDS |
| TCCCTCTCCTCTGACACTTT+TGG | 0.259321 | 3_3:+1869996 | None:intergenic |
| ATACTTGTGTTCAAAGTTAC+TGG | 0.269237 | 3_3:-1871966 | Msa0437860:CDS |
| GACAAAAGACCCTGTCTCTA+TGG | 0.296604 | 3_3:-1869828 | Msa0437860:CDS |
| GAGCAAGAGAAGACAATAAT+AGG | 0.297652 | 3_3:-1872292 | Msa0437860:CDS |
| CCACAGACTGGTTCTTATTA+AGG | 0.299145 | 3_3:+1872245 | None:intergenic |
| AAACTTGTGATATTTCTAAA+AGG | 0.300185 | 3_3:-1873200 | Msa0437860:CDS |
| AGATGCTCTGTCAGCAATTT+GGG | 0.301976 | 3_3:+1872789 | None:intergenic |
| ATTCCTCTGTGAACTGCTCC+TGG | 0.305181 | 3_3:+1873443 | None:intergenic |
| AATGTCCTCGGCTTCCTTCC+AGG | 0.310353 | 3_3:-1873854 | Msa0437860:CDS |
| ACATTGACCTGCTCCTTCTA+AGG | 0.312987 | 3_3:+1873872 | None:intergenic |
| TATCCATTGGACATTCTATA+AGG | 0.326559 | 3_3:+1873054 | None:intergenic |
| GACCTGCTCCTTCTAAGGTT+TGG | 0.333731 | 3_3:+1873877 | None:intergenic |
| GACTGCTCATTTGTTGACTT+TGG | 0.340876 | 3_3:+1874018 | None:intergenic |
| AATGGACAGATTATTGGAAA+TGG | 0.343957 | 3_3:-1871929 | Msa0437860:CDS |
| TAGATATCTTCGATTGTGAT+TGG | 0.345214 | 3_3:+1873150 | None:intergenic |
| ACCTTCCTTAATGAGTATAT+CGG | 0.347951 | 3_3:+1869878 | None:intergenic |
| ACCCATTGTCTGTCCAATCT+TGG | 0.354752 | 3_3:+1873277 | None:intergenic |
| GCAAGATAGCTGAAGAAAAC+AGG | 0.355535 | 3_3:-1872402 | Msa0437860:CDS |
| TAGCAGGTTTCTCGCACCTC+TGG | 0.358138 | 3_3:+1873583 | None:intergenic |
| GGTGTTGTATGTTGAACTTT+TGG | 0.362328 | 3_3:+1873384 | None:intergenic |
| TGATACCGATATACTCATTA+AGG | 0.362914 | 3_3:-1869883 | Msa0437860:CDS |
| TTCGTTCCTCATCCCAAGAT+TGG | 0.366085 | 3_3:-1873290 | Msa0437860:CDS |
| TAGCGGTGGAAGCAATAATT+TGG | 0.367004 | 3_3:-1874046 | Msa0437860:CDS |
| GTTGAAGAACCTTGAACTTC+AGG | 0.369839 | 3_3:-1871392 | Msa0437860:intron |
| GATTCTGAAGGCAGCAGATC+CGG | 0.369921 | 3_3:+1872017 | None:intergenic |
| AGACAAAATCGAATCCAAAA+AGG | 0.375712 | 3_3:-1874696 | Msa0437860:intron |
| TTTCTAGGAAAATTGATAAA+GGG | 0.382527 | 3_3:-1874729 | Msa0437860:intron |
| AGATCACATCATGAGTCATC+TGG | 0.384497 | 3_3:-1873549 | Msa0437860:CDS |
| ACACCTAATTCGCCAACTAA+TGG | 0.392084 | 3_3:-1873366 | Msa0437860:CDS |
| AGCAATTTGGGACCTTATAT+GGG | 0.400673 | 3_3:+1872801 | None:intergenic |
| TGAGCTTAAAGCGGAACGTT+TGG | 0.402269 | 3_3:-1871563 | Msa0437860:CDS |
| GAATCTGAAACCAAAATTCA+TGG | 0.403955 | 3_3:-1871884 | Msa0437860:CDS |
| TAGAAGTTTCAACCCATATA+AGG | 0.404168 | 3_3:-1872813 | Msa0437860:CDS |
| GTCAGCATTGGAGAAGGAAT+TGG | 0.411500 | 3_3:-1872686 | Msa0437860:CDS |
| TGCCTTCATTTAGCATTGTT+AGG | 0.412345 | 3_3:+1871990 | None:intergenic |
| TCACTAGCAATGCTACTTGT+AGG | 0.415999 | 3_3:+1873811 | None:intergenic |
| ATGACATGGACGGTAATTGC+AGG | 0.416460 | 3_3:-1873029 | Msa0437860:CDS |
| ATGGACAGATTATTGGAAAT+GGG | 0.417527 | 3_3:-1871928 | Msa0437860:CDS |
| CCCATTGTCTGTCCAATCTT+GGG | 0.418832 | 3_3:+1873278 | None:intergenic |
| TCTGCATCAAGATCCTCTTC+AGG | 0.419732 | 3_3:+1872988 | None:intergenic |
| CATCAATTTGAGCATTCGTT+GGG | 0.424818 | 3_3:-1873781 | Msa0437860:CDS |
| CTTTGCCATCACCTTTCAAC+CGG | 0.428446 | 3_3:+1872083 | None:intergenic |
| TGTTTCCCTCTCACTAAAAG+AGG | 0.433329 | 3_3:+1872546 | None:intergenic |
| ATCTGTCTTGTAGTTCTAAG+AGG | 0.437045 | 3_3:+1872425 | None:intergenic |
| ATTATTGGAAATGGGTTAGC+TGG | 0.437354 | 3_3:-1871920 | Msa0437860:CDS |
| GTGCTGGTCCAAACCTTAGA+AGG | 0.438288 | 3_3:-1873885 | Msa0437860:CDS |
| AGTCAACAAATGAGCAGTCT+TGG | 0.440835 | 3_3:-1874014 | Msa0437860:CDS |
| CAGCTTGTATCTGCTCAACT+TGG | 0.443713 | 3_3:+1871500 | None:intergenic |
| TGCTCATTTGTTGACTTTGG+AGG | 0.450076 | 3_3:+1874021 | None:intergenic |
| CAGTATAAACTGCCTTCAAC+GGG | 0.453079 | 3_3:-1870066 | Msa0437860:CDS |
| CTTTAATGAGCTTGTGGCAG+CGG | 0.453579 | 3_3:-1874123 | Msa0437860:five_prime_UTR |
| AGAGGAGAGGGATAAGTTGT+GGG | 0.455210 | 3_3:-1869985 | Msa0437860:CDS |
| CAACGTTTCAAGCATGGTTG+TGG | 0.458361 | 3_3:-1873508 | Msa0437860:CDS |
| AAAATATAACTCTCTTAAAC+CGG | 0.459855 | 3_3:-1872102 | Msa0437860:CDS |
| GTTGTGGATCGTTACATTGA+TGG | 0.460187 | 3_3:-1873492 | Msa0437860:CDS |
| TTCCTCTGTGAACTGCTCCT+GGG | 0.462437 | 3_3:+1873444 | None:intergenic |
| CTGAACTTGCTACAGCAGTA+AGG | 0.462455 | 3_3:-1871480 | Msa0437860:CDS |
| CAGAGGAGAGGGATAAGTTG+TGG | 0.463545 | 3_3:-1869986 | Msa0437860:CDS |
| GTCAACAAATGAGCAGTCTT+GGG | 0.464400 | 3_3:-1874013 | Msa0437860:CDS |
| GACTCAAAATTCTAAAATGC+GGG | 0.475892 | 3_3:-1873646 | Msa0437860:CDS |
| TACACAATTAAGTTCTTCCT+TGG | 0.477781 | 3_3:+1872765 | None:intergenic |
| ATCAGTCTTGAGAAGGGAGT+TGG | 0.478290 | 3_3:-1872161 | Msa0437860:CDS |
| ACTCTTGAAGATCCCGTTGA+AGG | 0.479489 | 3_3:+1870054 | None:intergenic |
| GATTGGACAGACAATGGGTA+TGG | 0.480642 | 3_3:-1873273 | Msa0437860:CDS |
| CTGGAACTCGTTAAAGAGAA+TGG | 0.481779 | 3_3:-1871947 | Msa0437860:CDS |
| AGCAGGTTTCTCGCACCTCT+GGG | 0.484380 | 3_3:+1873584 | None:intergenic |
| TAAAGACAGAACTGGAGATT+CGG | 0.485183 | 3_3:-1872744 | Msa0437860:CDS |
| ATGGAGCTGATGAGGTTAAC+GGG | 0.488315 | 3_3:-1872190 | Msa0437860:CDS |
| CAATAATAGGATTACGAGAT+GGG | 0.492820 | 3_3:-1872279 | Msa0437860:CDS |
| GAAGCCTTTGCTCTTCTGAC+TGG | 0.492870 | 3_3:+1872623 | None:intergenic |
| GATGGAGCTGATGAGGTTAA+CGG | 0.493847 | 3_3:-1872191 | Msa0437860:CDS |
| ATCTGCTGCCTTCAGAATCA+AGG | 0.494813 | 3_3:-1872013 | Msa0437860:CDS |
| GTCACGTCATAACCATAGTC+AGG | 0.494882 | 3_3:+1872889 | None:intergenic |
| TTCTAGCAACGTTTCAAGCA+TGG | 0.495405 | 3_3:-1873514 | Msa0437860:CDS |
| AAAATTCATGGACTCAAAAG+TGG | 0.495733 | 3_3:-1871872 | Msa0437860:CDS |
| TCTCTAAATGAATGAGCCCT+AGG | 0.496289 | 3_3:+1873330 | None:intergenic |
| CAGAGGAATGGCAGTAGACA+TGG | 0.496638 | 3_3:-1873429 | Msa0437860:CDS |
| ACCTAAACTGAAAATAGCTC+AGG | 0.499917 | 3_3:+1874171 | None:intergenic |
| ATCAGGACTCCCATAGAGAC+AGG | 0.500593 | 3_3:+1869818 | None:intergenic |
| ATTCTGAAGGCAGCAGATCC+GGG | 0.503534 | 3_3:+1872018 | None:intergenic |
| CCCAAGATTGGACAGACAAT+GGG | 0.503599 | 3_3:-1873278 | Msa0437860:CDS |
| TCATCAATTTGAGCATTCGT+TGG | 0.505621 | 3_3:-1873782 | Msa0437860:CDS |
| GAATGCTCAAATTGATGATA+CGG | 0.505632 | 3_3:+1873787 | None:intergenic |
| TCTCTTCAAAATTTCTTCGA+AGG | 0.505758 | 3_3:+1872374 | None:intergenic |
| GAATGAGATGCAGTCAGCAT+TGG | 0.506765 | 3_3:-1872698 | Msa0437860:CDS |
| ATCTAGTTGGATCTTTGACC+TGG | 0.507794 | 3_3:+1873836 | None:intergenic |
| GGTGACAGACCTGAAGTTCA+AGG | 0.510941 | 3_3:+1871383 | None:intergenic |
| AAAATGAAAGGGGAGATTCT+GGG | 0.512767 | 3_3:-1872460 | Msa0437860:CDS |
| GTTGGAATCACACAAGTTTG+AGG | 0.515914 | 3_3:-1872143 | Msa0437860:CDS |
| GTCCATGTCATGATATCCAT+TGG | 0.516805 | 3_3:+1873041 | None:intergenic |
| AAAATTCTAAAATGCGGGAC+AGG | 0.517664 | 3_3:-1873641 | Msa0437860:CDS |
| TCCACCGAAAAGCTATTCAT+TGG | 0.519275 | 3_3:-1873082 | Msa0437860:CDS |
| GGGATCTTCAAGAGTCTACA+AGG | 0.525019 | 3_3:-1870046 | Msa0437860:CDS |
| GATAACCAAATTTCAAGTGC+TGG | 0.525067 | 3_3:-1873901 | Msa0437860:CDS |
| TTGTGGATCGTTACATTGAT+GGG | 0.526997 | 3_3:-1873491 | Msa0437860:CDS |
| TTGTCTTTGACTCCATTAGT+TGG | 0.530813 | 3_3:+1873354 | None:intergenic |
| TGAACTTGCTACAGCAGTAA+GGG | 0.530850 | 3_3:-1871479 | Msa0437860:CDS |
| ATGGAGTCAAAGACAAACCT+AGG | 0.531447 | 3_3:-1873347 | Msa0437860:CDS |
| TATCAATGCTCTCCACAGAC+TGG | 0.533504 | 3_3:+1872233 | None:intergenic |
| GATCTTGAAGAACTGCTAGC+AGG | 0.535097 | 3_3:+1873567 | None:intergenic |
| GCCAAAAGTGTCAGAGGAGA+GGG | 0.535875 | 3_3:-1869997 | Msa0437860:CDS |
| ACAGTATAAACTGCCTTCAA+CGG | 0.536730 | 3_3:-1870067 | Msa0437860:CDS |
| ATCTATGCTAGATCATTGAA+TGG | 0.537882 | 3_3:-1873132 | Msa0437860:CDS |
| ACAAAAGACCCTGTCTCTAT+GGG | 0.538740 | 3_3:-1869827 | Msa0437860:CDS |
| AGCCGAGGAGAAAATAAGCT+TGG | 0.539237 | 3_3:-1872839 | Msa0437860:CDS |
| CTCAGAGATCGAAATGCTAA+AGG | 0.540448 | 3_3:-1869922 | Msa0437860:CDS |
| TCCCAAGATTGGACAGACAA+TGG | 0.540756 | 3_3:-1873279 | Msa0437860:CDS |
| GTCTGTCCAATCTTGGGATG+AGG | 0.541344 | 3_3:+1873284 | None:intergenic |
| GTCCAAACCTTAGAAGGAGC+AGG | 0.543619 | 3_3:-1873879 | Msa0437860:CDS |
| ACAATAATAGGATTACGAGA+TGG | 0.545799 | 3_3:-1872280 | Msa0437860:CDS |
| GGCCTAACAATGCTAAATGA+AGG | 0.547042 | 3_3:-1871992 | Msa0437860:CDS |
| GCTCAAGGTGTTGACTAGTA+AGG | 0.548476 | 3_3:-1872488 | Msa0437860:CDS |
| CTACTTGTAGGAGATCTAGT+TGG | 0.551710 | 3_3:+1873823 | None:intergenic |
| AAGCTATGATGAACCTGAAG+AGG | 0.552604 | 3_3:-1873001 | Msa0437860:CDS |
| AGGACAAAGAAGTAAAAGAA+AGG | 0.553426 | 3_3:-1869665 | Msa0437860:three_prime_UTR |
| TTGACACTTTAATGAGCTTG+TGG | 0.558836 | 3_3:-1874129 | Msa0437860:five_prime_UTR |
| TAGTCAACACCTTGAGCTGT+TGG | 0.560938 | 3_3:+1872494 | None:intergenic |
| CATTGGAGAAGGAATTGGAC+AGG | 0.562593 | 3_3:-1872681 | Msa0437860:CDS |
| GGACTCAAAAGTGGAACTGA+GGG | 0.563611 | 3_3:-1871863 | Msa0437860:CDS |
| ACTCTCTTAAACCGGTTGAA+AGG | 0.563780 | 3_3:-1872094 | Msa0437860:CDS |
| TCAAATATCAATGTTGCAAG+AGG | 0.565983 | 3_3:-1869856 | Msa0437860:CDS |
| TAATTGTGTAAAGACAGAAC+TGG | 0.566498 | 3_3:-1872752 | Msa0437860:CDS |
| TTAAACCGGTTGAAAGGTGA+TGG | 0.567877 | 3_3:-1872088 | Msa0437860:CDS |
| GAATAGAATCAGTCTTGAGA+AGG | 0.568371 | 3_3:-1872168 | Msa0437860:CDS |
| ACTCGTGAGACGCAGTTGAA+AGG | 0.568903 | 3_3:+1871413 | None:intergenic |
| TTTAACAATTGAGCTTAAAG+CGG | 0.569523 | 3_3:-1871572 | Msa0437860:CDS |
| AGGAGCAGTTCACAGAGGAA+TGG | 0.571707 | 3_3:-1873441 | Msa0437860:CDS |
| GAAAGTGAAACAAATTAGTG+AGG | 0.572556 | 3_3:-1869961 | Msa0437860:CDS |
| AGTTGGATCTTTGACCTGGA+AGG | 0.573525 | 3_3:+1873840 | None:intergenic |
| AAATGCAGATGGAGCTGATG+AGG | 0.574329 | 3_3:-1872198 | Msa0437860:CDS |
| AGAATTAATGAGAAGATCAA+AGG | 0.574358 | 3_3:-1872968 | Msa0437860:CDS |
| GATCACATCATGAGTCATCT+GGG | 0.574946 | 3_3:-1873548 | Msa0437860:CDS |
| TGGACAGGAGGTCAAGTGAC+TGG | 0.574983 | 3_3:-1872666 | Msa0437860:CDS |
| TCATGGCAAAAGTGAGGACA+AGG | 0.575944 | 3_3:-1873956 | Msa0437860:CDS |
| GCACATCAAGAAAATGCAGA+TGG | 0.576565 | 3_3:-1872209 | Msa0437860:CDS |
| AAGGAGCAGGTCAATGTCCT+CGG | 0.578720 | 3_3:-1873866 | Msa0437860:CDS |
| TTCAGATCGTCTGCATCTAG+CGG | 0.579431 | 3_3:-1874063 | Msa0437860:CDS |
| GGAGTGAATAATCAAGCTCA+TGG | 0.581614 | 3_3:-1873973 | Msa0437860:CDS |
| TAGACAAAGAACTATGCGCC+CGG | 0.586346 | 3_3:-1872036 | Msa0437860:CDS |
| ACATACTGACCAACAGCTCA+AGG | 0.587070 | 3_3:-1872503 | Msa0437860:CDS |
| TTGTTAGGCCTTGATTCTGA+AGG | 0.590931 | 3_3:+1872005 | None:intergenic |
| TGACATGGACGGTAATTGCA+GGG | 0.591350 | 3_3:-1873028 | Msa0437860:CDS |
| GAGAAGATCAAAGGAAGCTG+AGG | 0.593539 | 3_3:-1872959 | Msa0437860:CDS |
| TGCTGACAGAGCATCTGCCA+AGG | 0.599459 | 3_3:-1872782 | Msa0437860:CDS |
| ATTGAATAATCAATCGTCAG+AGG | 0.599707 | 3_3:-1871756 | Msa0437860:intron |
| CACTCATATATGTGAATGAG+TGG | 0.600849 | 3_3:-1869751 | Msa0437860:three_prime_UTR |
| ATGATTAATTTGAACGAACG+AGG | 0.601596 | 3_3:+1875123 | None:intergenic |
| CAAGGGAGTTATCAATCATG+AGG | 0.603485 | 3_3:-1870028 | Msa0437860:CDS |
| GCAGACACTGCAGATTGTGT+TGG | 0.604333 | 3_3:+1873618 | None:intergenic |
| TTTGGTGGAAGATTCATGCA+AGG | 0.605034 | 3_3:+1873402 | None:intergenic |
| ATTGGACAGACAATGGGTAT+GGG | 0.606897 | 3_3:-1873272 | Msa0437860:CDS |
| AGTACCAGTCAGAAGAGCAA+AGG | 0.608026 | 3_3:-1872627 | Msa0437860:CDS |
| GAACCTTATAGAATGTCCAA+TGG | 0.608161 | 3_3:-1873057 | Msa0437860:CDS |
| GATGCAGTCAGCATTGGAGA+AGG | 0.610943 | 3_3:-1872692 | Msa0437860:CDS |
| TGCCAAAAGTGTCAGAGGAG+AGG | 0.611276 | 3_3:-1869998 | Msa0437860:CDS |
| AGACTCAAAATTCTAAAATG+CGG | 0.612562 | 3_3:-1873647 | Msa0437860:CDS |
| AACAAATGAGCAGTCTTGGG+AGG | 0.617471 | 3_3:-1874010 | Msa0437860:CDS |
| AAGGGAGTTATCAATCATGA+GGG | 0.619066 | 3_3:-1870027 | Msa0437860:CDS |
| CAAGATAGCTGAAGAAAACA+GGG | 0.623458 | 3_3:-1872401 | Msa0437860:CDS |
| ACCGATATACTCATTAAGGA+AGG | 0.625725 | 3_3:-1869879 | Msa0437860:CDS |
| AATGTTGCCAAAAGTGTCAG+AGG | 0.626739 | 3_3:-1870003 | Msa0437860:CDS |
| GTGGAACTGAGGGGTTAACA+AGG | 0.632898 | 3_3:-1871853 | Msa0437860:CDS |
| ATCAATTTGAGCATTCGTTG+GGG | 0.633663 | 3_3:-1873780 | Msa0437860:intron |
| AGATCGTCTGCATCTAGCGG+TGG | 0.633712 | 3_3:-1874060 | Msa0437860:CDS |
| AATAGAATCAGTCTTGAGAA+GGG | 0.635360 | 3_3:-1872167 | Msa0437860:CDS |
| TGGACTCAAAAGTGGAACTG+AGG | 0.641479 | 3_3:-1871864 | Msa0437860:CDS |
| GACATGGACGGTAATTGCAG+GGG | 0.642445 | 3_3:-1873027 | Msa0437860:CDS |
| AGCTAGAGGAAAGTAGACCC+AGG | 0.644071 | 3_3:-1873461 | Msa0437860:CDS |
| TGGAGTCAAAGACAAACCTA+GGG | 0.644740 | 3_3:-1873346 | Msa0437860:CDS |
| AAATGACATACTTAGATCTG+AGG | 0.646044 | 3_3:-1871455 | Msa0437860:CDS |
| CTTGGGATGAGGAACGAAGA+CGG | 0.646326 | 3_3:+1873295 | None:intergenic |
| GAACTTGCTACAGCAGTAAG+GGG | 0.648518 | 3_3:-1871478 | Msa0437860:CDS |
| AATGGATATCATGACATGGA+CGG | 0.648578 | 3_3:-1873039 | Msa0437860:CDS |
| TGATGGGGAACAACAGCTAG+AGG | 0.652052 | 3_3:-1873475 | Msa0437860:CDS |
| GGAATCACACAAGTTTGAGG+AGG | 0.656353 | 3_3:-1872140 | Msa0437860:CDS |
| TCAAGCTCATGGCAAAAGTG+AGG | 0.660201 | 3_3:-1873962 | Msa0437860:CDS |
| TGGAGAAGGAATTGGACAGG+AGG | 0.660839 | 3_3:-1872678 | Msa0437860:CDS |
| GTCCAATGGATATCATGACA+TGG | 0.663635 | 3_3:-1873043 | Msa0437860:CDS |
| TTTGACCTGGAAGGAAGCCG+AGG | 0.670204 | 3_3:+1873849 | None:intergenic |
| CCTTAATAAGAACCAGTCTG+TGG | 0.672504 | 3_3:-1872245 | Msa0437860:CDS |
| TGATTAATTTGAACGAACGA+GGG | 0.676427 | 3_3:+1875124 | None:intergenic |
| GACAATCAGAAACCTAGCCG+AGG | 0.679751 | 3_3:-1872854 | Msa0437860:CDS |
| TGTGGATCGTTACATTGATG+GGG | 0.681982 | 3_3:-1873490 | Msa0437860:CDS |
| GACCCAGGAGCAGTTCACAG+AGG | 0.686900 | 3_3:-1873446 | Msa0437860:CDS |
| TCAGGACTCCCATAGAGACA+GGG | 0.708382 | 3_3:+1869819 | None:intergenic |
| GACTCAAAAGTGGAACTGAG+GGG | 0.714232 | 3_3:-1871862 | Msa0437860:CDS |
| AGGGAGTTATCAATCATGAG+GGG | 0.716877 | 3_3:-1870026 | Msa0437860:CDS |
| GGATCTTCAAGAGTCTACAA+GGG | 0.733654 | 3_3:-1870045 | Msa0437860:CDS |
| CATGGCAAAAGTGAGGACAA+GGG | 0.735030 | 3_3:-1873955 | Msa0437860:CDS |
| CTGCTGTCCAAAATTCCCAG+AGG | 0.735905 | 3_3:-1873599 | Msa0437860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCATTAAAATTCTAAAA+GGG | + | chr3_3:1870213-1870232 | None:intergenic | 10.0% |
| !! | TATTTCATTAAAATTCTAAA+AGG | + | chr3_3:1870214-1870233 | None:intergenic | 10.0% |
| !!! | ATAATAATGATTTTAAAGAA+AGG | + | chr3_3:1873051-1873070 | None:intergenic | 10.0% |
| !! | ACTACAAAAAATAAAATTAT+GGG | + | chr3_3:1874362-1874381 | None:intergenic | 10.0% |
| !! | AACTACAAAAAATAAAATTA+TGG | + | chr3_3:1874363-1874382 | None:intergenic | 10.0% |
| !! | CAAAAATTGAAATTGAAAAA+TGG | + | chr3_3:1869685-1869704 | None:intergenic | 15.0% |
| !!! | AATTTCTTTCTTTTTTTTGA+AGG | + | chr3_3:1870132-1870151 | None:intergenic | 15.0% |
| !! | TTCAAAAAAAAGAAAGAAAT+TGG | - | chr3_3:1870131-1870150 | Msa0437860:intron | 15.0% |
| !!! | ATTGTCTTAACTATAAATTT+TGG | - | chr3_3:1870154-1870173 | Msa0437860:intron | 15.0% |
| !!! | TTGTCTTAACTATAAATTTT+GGG | - | chr3_3:1870155-1870174 | Msa0437860:intron | 15.0% |
| !!! | TTTCTTTAATTGAATTTTAG+AGG | - | chr3_3:1872985-1873004 | Msa0437860:CDS | 15.0% |
| !! | TAATCAATAAATTTCAATGT+TGG | + | chr3_3:1873340-1873359 | None:intergenic | 15.0% |
| !! | AAAAAATAAAATTATGGGAT+TGG | + | chr3_3:1874357-1874376 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTAGTTTAATTTC+TGG | - | chr3_3:1874370-1874389 | Msa0437860:intron | 15.0% |
| !!! | GATTAGTCTAAGAATAAAAA+AGG | + | chr3_3:1869760-1869779 | None:intergenic | 20.0% |
| !!! | TTTTCTAGGAAAATTGATAA+AGG | - | chr3_3:1869969-1869988 | Msa0437860:CDS | 20.0% |
| !!! | TTTCTAGGAAAATTGATAAA+GGG | - | chr3_3:1869970-1869989 | Msa0437860:CDS | 20.0% |
| !! | CTAAATTACATATGAAAACA+TGG | + | chr3_3:1870054-1870073 | None:intergenic | 20.0% |
| !! | TAACACAGAAGAAAAAAAAA+GGG | + | chr3_3:1870083-1870102 | None:intergenic | 20.0% |
| !! | TTAACACAGAAGAAAAAAAA+AGG | + | chr3_3:1870084-1870103 | None:intergenic | 20.0% |
| !! | TTAATCAGTTAGAAAGAAAT+TGG | - | chr3_3:1870100-1870119 | Msa0437860:intron | 20.0% |
| !!! | TGTCTTAACTATAAATTTTG+GGG | - | chr3_3:1870156-1870175 | Msa0437860:intron | 20.0% |
| !!! | CATTTTGCACATATTAATTT+TGG | - | chr3_3:1870997-1871016 | Msa0437860:intron | 20.0% |
| !!! | AAACTTGTGATATTTCTAAA+AGG | - | chr3_3:1871499-1871518 | Msa0437860:CDS | 20.0% |
| !! | TATTCTTCTTTCAAAGAAAT+TGG | - | chr3_3:1871770-1871789 | Msa0437860:CDS | 20.0% |
| !!! | TTAAGAGAGTTATATTTTCT+TGG | + | chr3_3:1872595-1872614 | None:intergenic | 20.0% |
| !! | AAAATATAACTCTCTTAAAC+CGG | - | chr3_3:1872597-1872616 | Msa0437860:CDS | 20.0% |
| !! | AGTAACAAAAGTTTGAATAT+GGG | + | chr3_3:1873705-1873724 | None:intergenic | 20.0% |
| !!! | TCAATTTCATTTAAGATTGT+TGG | - | chr3_3:1873903-1873922 | Msa0437860:CDS | 20.0% |
| !!! | ATTATGTTTTAGTGTTCTTT+AGG | + | chr3_3:1873986-1874005 | None:intergenic | 20.0% |
| !!! | CCTAACATTAACTTTAATTT+AGG | + | chr3_3:1874053-1874072 | None:intergenic | 20.0% |
| !! | CCTAAATTAAAGTTAATGTT+AGG | - | chr3_3:1874050-1874069 | Msa0437860:CDS | 20.0% |
| !! | GATAATCTATGATCATTATT+TGG | + | chr3_3:1874157-1874176 | None:intergenic | 20.0% |
| !!! | TTTTTATTAGTTGTCTTTGT+GGG | - | chr3_3:1874531-1874550 | Msa0437860:intron | 20.0% |
| !! | TATGTGAAAAAAATTGTATC+AGG | + | chr3_3:1874901-1874920 | None:intergenic | 20.0% |
| !!! | TGATACAATTTTTTTCACAT+AGG | - | chr3_3:1874900-1874919 | Msa0437860:intron | 20.0% |
| !!! | TTAGATTTTGTTTTTAGAGT+TGG | - | chr3_3:1874987-1875006 | Msa0437860:intron | 20.0% |
| ! | AATTCATATCTCTCTCTTTA+TGG | - | chr3_3:1869632-1869651 | Msa0437860:three_prime_UTR | 25.0% |
| ! | AGAATAAAAAAGGAAGAGAA+AGG | + | chr3_3:1869750-1869769 | None:intergenic | 25.0% |
| !! | TTTGACCATTTTCTTTTTCT+TGG | - | chr3_3:1869934-1869953 | Msa0437860:CDS | 25.0% |
| !! | CAAGAAAAATGTTACCTTTT+TGG | + | chr3_3:1870020-1870039 | None:intergenic | 25.0% |
| ! | ATATGAAAACATGGAATCAA+GGG | + | chr3_3:1870045-1870064 | None:intergenic | 25.0% |
| ! | AACACAGAAGAAAAAAAAAG+GGG | + | chr3_3:1870082-1870101 | None:intergenic | 25.0% |
| ! | ATCTATGAGTAAAATGAACA+TGG | + | chr3_3:1870299-1870318 | None:intergenic | 25.0% |
| ! | AACAAGTGCAATGAATAAAA+AGG | + | chr3_3:1870350-1870369 | None:intergenic | 25.0% |
| ! | AAAAACCATCAAGACAAAAT+AGG | + | chr3_3:1870476-1870495 | None:intergenic | 25.0% |
| !!! | TTTGTTTTCTTTTCTGTCAT+AGG | - | chr3_3:1870495-1870514 | Msa0437860:intron | 25.0% |
| !!! | TTAAAGTGTCAAGATTTTGA+AGG | + | chr3_3:1870562-1870581 | None:intergenic | 25.0% |
| ! | CAGTTTCAAAGTTAGATTAT+CGG | + | chr3_3:1870951-1870970 | None:intergenic | 25.0% |
| ! | TGCAAAATGTAACTAATACA+AGG | + | chr3_3:1870986-1871005 | None:intergenic | 25.0% |
| !!! | AGACTCAAAATTCTAAAATG+CGG | - | chr3_3:1871052-1871071 | Msa0437860:intron | 25.0% |
| ! | AGAATTAATGAGAAGATCAA+AGG | - | chr3_3:1871731-1871750 | Msa0437860:intron | 25.0% |
| ! | TTTAACAATTGAGCTTAAAG+CGG | - | chr3_3:1873127-1873146 | Msa0437860:CDS | 25.0% |
| !! | TTCCTATAAAAGTGCATATA+TGG | - | chr3_3:1873402-1873421 | Msa0437860:CDS | 25.0% |
| !! | TCCTATAAAAGTGCATATAT+GGG | - | chr3_3:1873403-1873422 | Msa0437860:CDS | 25.0% |
| ! | TTCATATATATCGAGACTTA+TGG | + | chr3_3:1873455-1873474 | None:intergenic | 25.0% |
| ! | TAGTATTTAAGTGCGAAAAT+GGG | + | chr3_3:1873638-1873657 | None:intergenic | 25.0% |
| ! | TTAGTATTTAAGTGCGAAAA+TGG | + | chr3_3:1873639-1873658 | None:intergenic | 25.0% |
| ! | TTTGAATATGGGTGAAAAAA+TGG | + | chr3_3:1873694-1873713 | None:intergenic | 25.0% |
| ! | CAGTAACAAAAGTTTGAATA+TGG | + | chr3_3:1873706-1873725 | None:intergenic | 25.0% |
| !!! | CTTATGTCCTATTTTTTTCA+AGG | - | chr3_3:1873776-1873795 | Msa0437860:intron | 25.0% |
| ! | CATCATTCCTTGAAAAAAAT+AGG | + | chr3_3:1873786-1873805 | None:intergenic | 25.0% |
| ! | TTAGAATCTATGATGAGTAT+TGG | + | chr3_3:1873817-1873836 | None:intergenic | 25.0% |
| !!! | TAGTCGATCATTTTGTTTAT+TGG | + | chr3_3:1873880-1873899 | None:intergenic | 25.0% |
| !! | TTGTGATATGATTTAGAACT+AGG | - | chr3_3:1874089-1874108 | Msa0437860:exon | 25.0% |
| !!! | GTAGTTTATTGACTCATAAA+AGG | + | chr3_3:1874118-1874137 | None:intergenic | 25.0% |
| ! | TTTATGAGTCAATAAACTAC+TGG | - | chr3_3:1874118-1874137 | Msa0437860:five_prime_UTR | 25.0% |
| ! | GATCATTATTTGGTTATATC+TGG | + | chr3_3:1874147-1874166 | None:intergenic | 25.0% |
| ! | ATTTGATCATAGAGATTATC+CGG | + | chr3_3:1874310-1874329 | None:intergenic | 25.0% |
| ! | AAATAAAATTATGGGATTGG+TGG | + | chr3_3:1874354-1874373 | None:intergenic | 25.0% |
| !! | GTTTTTATTAGTTGTCTTTG+TGG | - | chr3_3:1874530-1874549 | Msa0437860:intron | 25.0% |
| !! | TTTTATTAGTTGTCTTTGTG+GGG | - | chr3_3:1874532-1874551 | Msa0437860:intron | 25.0% |
| ! | ATGATTAATTTGAACGAACG+AGG | + | chr3_3:1869579-1869598 | None:intergenic | 30.0% |
| CAAGTCCAAGAAAAAGAAAA+TGG | + | chr3_3:1869942-1869961 | None:intergenic | 30.0% | |
| !! | GGACTTGTTTATTGTTTTCT+AGG | - | chr3_3:1869955-1869974 | Msa0437860:CDS | 30.0% |
| AGACAAAATCGAATCCAAAA+AGG | - | chr3_3:1870003-1870022 | Msa0437860:CDS | 30.0% | |
| CATATGAAAACATGGAATCA+AGG | + | chr3_3:1870046-1870065 | None:intergenic | 30.0% | |
| GAATAATCTTAGGCATAACA+TGG | - | chr3_3:1870324-1870343 | Msa0437860:intron | 30.0% | |
| ! | GTAATCCTATTTTGTCTTGA+TGG | - | chr3_3:1870468-1870487 | Msa0437860:intron | 30.0% |
| ! | TTTCTTTTCTGTCATAGGTT+TGG | - | chr3_3:1870500-1870519 | Msa0437860:intron | 30.0% |
| !! | TCAAGATTTTGAAGGATTGA+AGG | + | chr3_3:1870554-1870573 | None:intergenic | 30.0% |
| GAAAAAGAATAGCTTCTTCA+TGG | + | chr3_3:1870619-1870638 | None:intergenic | 30.0% | |
| ! | GAATGCTCAAATTGATGATA+CGG | + | chr3_3:1870915-1870934 | None:intergenic | 30.0% |
| !!! | GCATTTTAGAATTTTGAGTC+TGG | + | chr3_3:1871053-1871072 | None:intergenic | 30.0% |
| !! | GACTCAAAATTCTAAAATGC+GGG | - | chr3_3:1871053-1871072 | Msa0437860:intron | 30.0% |
| !!! | ACATTTTTTGCAAGAGTTCT+TGG | + | chr3_3:1871462-1871481 | None:intergenic | 30.0% |
| TTGCAAAAAATGTCATTGAG+AGG | - | chr3_3:1871469-1871488 | Msa0437860:CDS | 30.0% | |
| TAGATATCTTCGATTGTGAT+TGG | + | chr3_3:1871552-1871571 | None:intergenic | 30.0% | |
| ATCTATGCTAGATCATTGAA+TGG | - | chr3_3:1871567-1871586 | Msa0437860:CDS | 30.0% | |
| ! | TCTTCCAATGAATAGCTTTT+CGG | + | chr3_3:1871624-1871643 | None:intergenic | 30.0% |
| TATCCATTGGACATTCTATA+AGG | + | chr3_3:1871648-1871667 | None:intergenic | 30.0% | |
| !!! | GAAAACTTTTTTCCTGACTA+TGG | - | chr3_3:1871798-1871817 | Msa0437860:CDS | 30.0% |
| TAGAAGTTTCAACCCATATA+AGG | - | chr3_3:1871886-1871905 | Msa0437860:CDS | 30.0% | |
| TACACAATTAAGTTCTTCCT+TGG | + | chr3_3:1871937-1871956 | None:intergenic | 30.0% | |
| TAATTGTGTAAAGACAGAAC+TGG | - | chr3_3:1871947-1871966 | Msa0437860:CDS | 30.0% | |
| AGTAAGGCAGAAAAAATGAA+AGG | - | chr3_3:1872227-1872246 | Msa0437860:CDS | 30.0% | |
| GTAAGGCAGAAAAAATGAAA+GGG | - | chr3_3:1872228-1872247 | Msa0437860:CDS | 30.0% | |
| TAAGGCAGAAAAAATGAAAG+GGG | - | chr3_3:1872229-1872248 | Msa0437860:CDS | 30.0% | |
| TCTCTTCAAAATTTCTTCGA+AGG | + | chr3_3:1872328-1872347 | None:intergenic | 30.0% | |
| !! | TCGAAGAAATTTTGAAGAGA+AGG | - | chr3_3:1872328-1872347 | Msa0437860:CDS | 30.0% |
| !! | AAATTTTGAAGAGAAGGAGA+AGG | - | chr3_3:1872334-1872353 | Msa0437860:CDS | 30.0% |
| ACAATAATAGGATTACGAGA+TGG | - | chr3_3:1872419-1872438 | Msa0437860:CDS | 30.0% | |
| CAATAATAGGATTACGAGAT+GGG | - | chr3_3:1872420-1872439 | Msa0437860:CDS | 30.0% | |
| AATAGAATCAGTCTTGAGAA+GGG | - | chr3_3:1872532-1872551 | Msa0437860:CDS | 30.0% | |
| ATACTTGTGTTCAAAGTTAC+TGG | - | chr3_3:1872733-1872752 | Msa0437860:CDS | 30.0% | |
| AAAGAGAATGGACAGATTAT+TGG | - | chr3_3:1872764-1872783 | Msa0437860:CDS | 30.0% | |
| AATGGACAGATTATTGGAAA+TGG | - | chr3_3:1872770-1872789 | Msa0437860:CDS | 30.0% | |
| ATGGACAGATTATTGGAAAT+GGG | - | chr3_3:1872771-1872790 | Msa0437860:CDS | 30.0% | |
| ! | GAATCTGAAACCAAAATTCA+TGG | - | chr3_3:1872815-1872834 | Msa0437860:CDS | 30.0% |
| !! | ACTTTTGAGTCCATGAATTT+TGG | + | chr3_3:1872828-1872847 | None:intergenic | 30.0% |
| AAAATTCATGGACTCAAAAG+TGG | - | chr3_3:1872827-1872846 | Msa0437860:CDS | 30.0% | |
| ! | GACTTTTCTTTCAACAAAGA+AGG | + | chr3_3:1872887-1872906 | None:intergenic | 30.0% |
| ATTGAATAATCAATCGTCAG+AGG | - | chr3_3:1872943-1872962 | Msa0437860:CDS | 30.0% | |
| AAATGACATACTTAGATCTG+AGG | - | chr3_3:1873244-1873263 | Msa0437860:CDS | 30.0% | |
| ! | TATCCTTTTCTAACAATGCA+CGG | + | chr3_3:1873380-1873399 | None:intergenic | 30.0% |
| ! | ACCCATATATGCACTTTTAT+AGG | + | chr3_3:1873407-1873426 | None:intergenic | 30.0% |
| ! | ATAAAAGTGCATATATGGGT+AGG | - | chr3_3:1873407-1873426 | Msa0437860:CDS | 30.0% |
| AACACTAAAACATAATGCCA+CGG | - | chr3_3:1873990-1874009 | Msa0437860:CDS | 30.0% | |
| ! | ACTTTAATTTAGGCCTCTAT+GGG | + | chr3_3:1874043-1874062 | None:intergenic | 30.0% |
| ! | AACTTTAATTTAGGCCTCTA+TGG | + | chr3_3:1874044-1874063 | None:intergenic | 30.0% |
| TTTGATCATAGAGATTATCC+GGG | + | chr3_3:1874309-1874328 | None:intergenic | 30.0% | |
| TTTGTCGAATCTCTATGATA+TGG | + | chr3_3:1874432-1874451 | None:intergenic | 30.0% | |
| !!! | GATTCGACAAAGTTTTAAGT+TGG | - | chr3_3:1874441-1874460 | Msa0437860:intron | 30.0% |
| GAAAGTGAAACAAATTAGTG+AGG | - | chr3_3:1874738-1874757 | Msa0437860:intron | 30.0% | |
| TGATACCGATATACTCATTA+AGG | - | chr3_3:1874816-1874835 | Msa0437860:intron | 30.0% | |
| ACCTTCCTTAATGAGTATAT+CGG | + | chr3_3:1874824-1874843 | None:intergenic | 30.0% | |
| TCAAATATCAATGTTGCAAG+AGG | - | chr3_3:1874843-1874862 | Msa0437860:intron | 30.0% | |
| ! | CTTTTCATAATCTGTTTCAC+AGG | - | chr3_3:1875014-1875033 | Msa0437860:intron | 30.0% |
| AGGACAAAGAAGTAAAAGAA+AGG | - | chr3_3:1875034-1875053 | Msa0437860:intron | 30.0% | |
| ! | GTGACTCACAAGCATTTTAA+CGG | + | chr3_3:1869866-1869885 | None:intergenic | 35.0% |
| TAGATGCTGCGAATAATCTT+AGG | - | chr3_3:1870314-1870333 | Msa0437860:intron | 35.0% | |
| GATTACACAAACAAGCACAA+TGG | + | chr3_3:1870454-1870473 | None:intergenic | 35.0% | |
| !! | ACCTGAGCTATTTTCAGTTT+AGG | - | chr3_3:1870527-1870546 | Msa0437860:intron | 35.0% |
| ACCTAAACTGAAAATAGCTC+AGG | + | chr3_3:1870531-1870550 | None:intergenic | 35.0% | |
| TTGACACTTTAATGAGCTTG+TGG | - | chr3_3:1870570-1870589 | Msa0437860:intron | 35.0% | |
| ! | AGCAACTTGCTTTCTAGATT+TGG | + | chr3_3:1870778-1870797 | None:intergenic | 35.0% |
| ! | GATAACCAAATTTCAAGTGC+TGG | - | chr3_3:1870798-1870817 | Msa0437860:intron | 35.0% |
| TCATCAATTTGAGCATTCGT+TGG | - | chr3_3:1870917-1870936 | Msa0437860:intron | 35.0% | |
| CATCAATTTGAGCATTCGTT+GGG | - | chr3_3:1870918-1870937 | Msa0437860:intron | 35.0% | |
| ATCAATTTGAGCATTCGTTG+GGG | - | chr3_3:1870919-1870938 | Msa0437860:intron | 35.0% | |
| !!! | AATTTTGGCTGTACTTTCTG+TGG | - | chr3_3:1871012-1871031 | Msa0437860:intron | 35.0% |
| !! | AAAATTCTAAAATGCGGGAC+AGG | - | chr3_3:1871058-1871077 | Msa0437860:intron | 35.0% |
| TTGTGGATCGTTACATTGAT+GGG | - | chr3_3:1871208-1871227 | Msa0437860:intron | 35.0% | |
| ! | GTTGTATGTTGAACTTTTGG+TGG | + | chr3_3:1871315-1871334 | None:intergenic | 35.0% |
| !! | GGTGTTGTATGTTGAACTTT+TGG | + | chr3_3:1871318-1871337 | None:intergenic | 35.0% |
| TTGTCTTTGACTCCATTAGT+TGG | + | chr3_3:1871348-1871367 | None:intergenic | 35.0% | |
| GAACCTTATAGAATGTCCAA+TGG | - | chr3_3:1871642-1871661 | Msa0437860:intron | 35.0% | |
| AATGGATATCATGACATGGA+CGG | - | chr3_3:1871660-1871679 | Msa0437860:intron | 35.0% | |
| ! | AGCAATTTGGGACCTTATAT+GGG | + | chr3_3:1871901-1871920 | None:intergenic | 35.0% |
| TAAAGACAGAACTGGAGATT+CGG | - | chr3_3:1871955-1871974 | Msa0437860:CDS | 35.0% | |
| ! | AAGTTTCCTCTTTTAGTGAG+AGG | - | chr3_3:1872147-1872166 | Msa0437860:CDS | 35.0% |
| ! | AGTTTCCTCTTTTAGTGAGA+GGG | - | chr3_3:1872148-1872167 | Msa0437860:CDS | 35.0% |
| AAAAATGAAAGGGGAGATTC+TGG | - | chr3_3:1872238-1872257 | Msa0437860:CDS | 35.0% | |
| AAAATGAAAGGGGAGATTCT+GGG | - | chr3_3:1872239-1872258 | Msa0437860:CDS | 35.0% | |
| !! | ATCTGTCTTGTAGTTCTAAG+AGG | + | chr3_3:1872277-1872296 | None:intergenic | 35.0% |
| CAAGATAGCTGAAGAAAACA+GGG | - | chr3_3:1872298-1872317 | Msa0437860:CDS | 35.0% | |
| GAGCAAGAGAAGACAATAAT+AGG | - | chr3_3:1872407-1872426 | Msa0437860:CDS | 35.0% | |
| GAATAGAATCAGTCTTGAGA+AGG | - | chr3_3:1872531-1872550 | Msa0437860:CDS | 35.0% | |
| TGCCTTCATTTAGCATTGTT+AGG | + | chr3_3:1872712-1872731 | None:intergenic | 35.0% | |
| !! | ATTATTGGAAATGGGTTAGC+TGG | - | chr3_3:1872779-1872798 | Msa0437860:CDS | 35.0% |
| !! | CATCATGCTGTTTCTTGTAT+AGG | - | chr3_3:1873100-1873119 | Msa0437860:CDS | 35.0% |
| TTTCTAACAATGCACGGAAT+AGG | + | chr3_3:1873374-1873393 | None:intergenic | 35.0% | |
| ATTCCGTGCATTGTTAGAAA+AGG | - | chr3_3:1873374-1873393 | Msa0437860:CDS | 35.0% | |
| AGTGAATTTCAATGATCTGC+TGG | + | chr3_3:1873507-1873526 | None:intergenic | 35.0% | |
| TAAACTATATAACCAGCAGC+AGG | - | chr3_3:1873527-1873546 | Msa0437860:CDS | 35.0% | |
| TAAGTGCGAAAATGGGAATT+AGG | + | chr3_3:1873631-1873650 | None:intergenic | 35.0% | |
| GTCGTGAAATTAAAGTAGGT+TGG | + | chr3_3:1873934-1873953 | None:intergenic | 35.0% | |
| ACACTAAAACATAATGCCAC+GGG | - | chr3_3:1873991-1874010 | Msa0437860:CDS | 35.0% | |
| !! | GGTTTCTTGTGCTTTTTACA+CGG | + | chr3_3:1874261-1874280 | None:intergenic | 35.0% |
| TTTCGTTCATATAGGATTGG+TGG | + | chr3_3:1874282-1874301 | None:intergenic | 35.0% | |
| ACCAATCCTATATGAACGAA+AGG | - | chr3_3:1874281-1874300 | Msa0437860:intron | 35.0% | |
| ACCTTTCGTTCATATAGGAT+TGG | + | chr3_3:1874285-1874304 | None:intergenic | 35.0% | |
| ACAGTATAAACTGCCTTCAA+CGG | - | chr3_3:1874632-1874651 | Msa0437860:intron | 35.0% | |
| AAGGGAGTTATCAATCATGA+GGG | - | chr3_3:1874672-1874691 | Msa0437860:intron | 35.0% | |
| ACCGATATACTCATTAAGGA+AGG | - | chr3_3:1874820-1874839 | Msa0437860:intron | 35.0% | |
| CACTCATATATGTGAATGAG+TGG | - | chr3_3:1874948-1874967 | Msa0437860:intron | 35.0% | |
| ! | AATCTCTCGCTAGCTTCAAT+TGG | - | chr3_3:1869902-1869921 | Msa0437860:CDS | 40.0% |
| TTCTCTGATGTAGTAGCTTG+TGG | - | chr3_3:1870262-1870281 | Msa0437860:intron | 40.0% | |
| TAGCGGTGGAAGCAATAATT+TGG | - | chr3_3:1870653-1870672 | Msa0437860:intron | 40.0% | |
| !! | TGCTCATTTGTTGACTTTGG+AGG | + | chr3_3:1870681-1870700 | None:intergenic | 40.0% |
| !! | GACTGCTCATTTGTTGACTT+TGG | + | chr3_3:1870684-1870703 | None:intergenic | 40.0% |
| AGTCAACAAATGAGCAGTCT+TGG | - | chr3_3:1870685-1870704 | Msa0437860:intron | 40.0% | |
| GTCAACAAATGAGCAGTCTT+GGG | - | chr3_3:1870686-1870705 | Msa0437860:intron | 40.0% | |
| !!! | TGGGAGGTTTTTTCAGATAG+TGG | - | chr3_3:1870705-1870724 | Msa0437860:intron | 40.0% |
| GGAGTGAATAATCAAGCTCA+TGG | - | chr3_3:1870726-1870745 | Msa0437860:intron | 40.0% | |
| TTGGACCAGCACTTGAAATT+TGG | + | chr3_3:1870806-1870825 | None:intergenic | 40.0% | |
| ATCTAGTTGGATCTTTGACC+TGG | + | chr3_3:1870866-1870885 | None:intergenic | 40.0% | |
| CTACTTGTAGGAGATCTAGT+TGG | + | chr3_3:1870879-1870898 | None:intergenic | 40.0% | |
| ! | TCACTAGCAATGCTACTTGT+AGG | + | chr3_3:1870891-1870910 | None:intergenic | 40.0% |
| AGATCACATCATGAGTCATC+TGG | - | chr3_3:1871150-1871169 | Msa0437860:intron | 40.0% | |
| GATCACATCATGAGTCATCT+GGG | - | chr3_3:1871151-1871170 | Msa0437860:intron | 40.0% | |
| TTCTAGCAACGTTTCAAGCA+TGG | - | chr3_3:1871185-1871204 | Msa0437860:intron | 40.0% | |
| GTTGTGGATCGTTACATTGA+TGG | - | chr3_3:1871207-1871226 | Msa0437860:intron | 40.0% | |
| TGTGGATCGTTACATTGATG+GGG | - | chr3_3:1871209-1871228 | Msa0437860:intron | 40.0% | |
| TTTGGTGGAAGATTCATGCA+AGG | + | chr3_3:1871300-1871319 | None:intergenic | 40.0% | |
| ACACCTAATTCGCCAACTAA+TGG | - | chr3_3:1871333-1871352 | Msa0437860:intron | 40.0% | |
| ACTCCATTAGTTGGCGAATT+AGG | + | chr3_3:1871339-1871358 | None:intergenic | 40.0% | |
| ATGGAGTCAAAGACAAACCT+AGG | - | chr3_3:1871352-1871371 | Msa0437860:intron | 40.0% | |
| TGGAGTCAAAGACAAACCTA+GGG | - | chr3_3:1871353-1871372 | Msa0437860:intron | 40.0% | |
| TCTCTAAATGAATGAGCCCT+AGG | + | chr3_3:1871372-1871391 | None:intergenic | 40.0% | |
| ATTGGACAGACAATGGGTAT+GGG | - | chr3_3:1871427-1871446 | Msa0437860:CDS | 40.0% | |
| TCCACCGAAAAGCTATTCAT+TGG | - | chr3_3:1871617-1871636 | Msa0437860:intron | 40.0% | |
| ! | TCCAATGAATAGCTTTTCGG+TGG | + | chr3_3:1871621-1871640 | None:intergenic | 40.0% |
| GTCCAATGGATATCATGACA+TGG | - | chr3_3:1871656-1871675 | Msa0437860:intron | 40.0% | |
| GTCCATGTCATGATATCCAT+TGG | + | chr3_3:1871661-1871680 | None:intergenic | 40.0% | |
| AAGCTATGATGAACCTGAAG+AGG | - | chr3_3:1871698-1871717 | Msa0437860:intron | 40.0% | |
| !! | AGCCAAGCTTATTTTCTCCT+CGG | + | chr3_3:1871865-1871884 | None:intergenic | 40.0% |
| ! | CAGCAATTTGGGACCTTATA+TGG | + | chr3_3:1871902-1871921 | None:intergenic | 40.0% |
| AGATGCTCTGTCAGCAATTT+GGG | + | chr3_3:1871913-1871932 | None:intergenic | 40.0% | |
| TGTTTCCCTCTCACTAAAAG+AGG | + | chr3_3:1872156-1872175 | None:intergenic | 40.0% | |
| GCAAGATAGCTGAAGAAAAC+AGG | - | chr3_3:1872297-1872316 | Msa0437860:CDS | 40.0% | |
| ! | CCACAGACTGGTTCTTATTA+AGG | + | chr3_3:1872457-1872476 | None:intergenic | 40.0% |
| CCTTAATAAGAACCAGTCTG+TGG | - | chr3_3:1872454-1872473 | Msa0437860:CDS | 40.0% | |
| GCACATCAAGAAAATGCAGA+TGG | - | chr3_3:1872490-1872509 | Msa0437860:CDS | 40.0% | |
| GTTGGAATCACACAAGTTTG+AGG | - | chr3_3:1872556-1872575 | Msa0437860:CDS | 40.0% | |
| ACTCTCTTAAACCGGTTGAA+AGG | - | chr3_3:1872605-1872624 | Msa0437860:CDS | 40.0% | |
| TTAAACCGGTTGAAAGGTGA+TGG | - | chr3_3:1872611-1872630 | Msa0437860:CDS | 40.0% | |
| TTGTTAGGCCTTGATTCTGA+AGG | + | chr3_3:1872697-1872716 | None:intergenic | 40.0% | |
| GGCCTAACAATGCTAAATGA+AGG | - | chr3_3:1872707-1872726 | Msa0437860:CDS | 40.0% | |
| CTGGAACTCGTTAAAGAGAA+TGG | - | chr3_3:1872752-1872771 | Msa0437860:CDS | 40.0% | |
| !! | TGAACTTGCTACAGCAGTAA+GGG | - | chr3_3:1873220-1873239 | Msa0437860:CDS | 40.0% |
| GTTGAAGAACCTTGAACTTC+AGG | - | chr3_3:1873307-1873326 | Msa0437860:CDS | 40.0% | |
| !!! | CAGCAGGTTTTAGAGTGATT+TGG | - | chr3_3:1873543-1873562 | Msa0437860:CDS | 40.0% |
| TGGGTGAAAAAATGGTGAAG+TGG | + | chr3_3:1873686-1873705 | None:intergenic | 40.0% | |
| TAGCAGGCTTGAGAAAGATT+TGG | - | chr3_3:1873849-1873868 | Msa0437860:CDS | 40.0% | |
| CCTCGTCGTGAAATTAAAGT+AGG | + | chr3_3:1873938-1873957 | None:intergenic | 40.0% | |
| ! | CCTACTTTAATTTCACGACG+AGG | - | chr3_3:1873935-1873954 | Msa0437860:CDS | 40.0% |
| GTGTTCTTTAGGTGCAATGA+TGG | + | chr3_3:1873975-1873994 | None:intergenic | 40.0% | |
| ATGTCATGTCTCATGGTTTC+TGG | + | chr3_3:1874201-1874220 | None:intergenic | 40.0% | |
| AACCATGAGACATGACATCT+CGG | - | chr3_3:1874203-1874222 | Msa0437860:intron | 40.0% | |
| CTATATGAACGAAAGGTTCC+CGG | - | chr3_3:1874288-1874307 | Msa0437860:intron | 40.0% | |
| !!! | AAGTTTTAAGTTGGCAGTCG+AGG | - | chr3_3:1874450-1874469 | Msa0437860:intron | 40.0% |
| CTTATCCCACTAAAAGGAGA+GGG | + | chr3_3:1874486-1874505 | None:intergenic | 40.0% | |
| TCTTATCCCACTAAAAGGAG+AGG | + | chr3_3:1874487-1874506 | None:intergenic | 40.0% | |
| ! | CCAAGTCTTATCCCACTAAA+AGG | + | chr3_3:1874492-1874511 | None:intergenic | 40.0% |
| ! | CCTTTTAGTGGGATAAGACT+TGG | - | chr3_3:1874489-1874508 | Msa0437860:intron | 40.0% |
| CAGTATAAACTGCCTTCAAC+GGG | - | chr3_3:1874633-1874652 | Msa0437860:intron | 40.0% | |
| GGATCTTCAAGAGTCTACAA+GGG | - | chr3_3:1874654-1874673 | Msa0437860:intron | 40.0% | |
| CAAGGGAGTTATCAATCATG+AGG | - | chr3_3:1874671-1874690 | Msa0437860:intron | 40.0% | |
| AGGGAGTTATCAATCATGAG+GGG | - | chr3_3:1874673-1874692 | Msa0437860:intron | 40.0% | |
| !! | AATGTTGCCAAAAGTGTCAG+AGG | - | chr3_3:1874696-1874715 | Msa0437860:intron | 40.0% |
| CTCAGAGATCGAAATGCTAA+AGG | - | chr3_3:1874777-1874796 | Msa0437860:intron | 40.0% | |
| ACAAAAGACCCTGTCTCTAT+GGG | - | chr3_3:1874872-1874891 | Msa0437860:intron | 40.0% | |
| CTTTAATGAGCTTGTGGCAG+CGG | - | chr3_3:1870576-1870595 | Msa0437860:intron | 45.0% | |
| TTCAGATCGTCTGCATCTAG+CGG | - | chr3_3:1870636-1870655 | Msa0437860:intron | 45.0% | |
| AACAAATGAGCAGTCTTGGG+AGG | - | chr3_3:1870689-1870708 | Msa0437860:intron | 45.0% | |
| TCAAGCTCATGGCAAAAGTG+AGG | - | chr3_3:1870737-1870756 | Msa0437860:intron | 45.0% | |
| TCATGGCAAAAGTGAGGACA+AGG | - | chr3_3:1870743-1870762 | Msa0437860:intron | 45.0% | |
| CATGGCAAAAGTGAGGACAA+GGG | - | chr3_3:1870744-1870763 | Msa0437860:intron | 45.0% | |
| ACATTGACCTGCTCCTTCTA+AGG | + | chr3_3:1870830-1870849 | None:intergenic | 45.0% | |
| AGTTGGATCTTTGACCTGGA+AGG | + | chr3_3:1870862-1870881 | None:intergenic | 45.0% | |
| GATCTTGAAGAACTGCTAGC+AGG | + | chr3_3:1871135-1871154 | None:intergenic | 45.0% | |
| CAACGTTTCAAGCATGGTTG+TGG | - | chr3_3:1871191-1871210 | Msa0437860:intron | 45.0% | |
| TTCGTTCCTCATCCCAAGAT+TGG | - | chr3_3:1871409-1871428 | Msa0437860:CDS | 45.0% | |
| TCCCAAGATTGGACAGACAA+TGG | - | chr3_3:1871420-1871439 | Msa0437860:CDS | 45.0% | |
| CCCATTGTCTGTCCAATCTT+GGG | + | chr3_3:1871424-1871443 | None:intergenic | 45.0% | |
| CCCAAGATTGGACAGACAAT+GGG | - | chr3_3:1871421-1871440 | Msa0437860:CDS | 45.0% | |
| ACCCATTGTCTGTCCAATCT+TGG | + | chr3_3:1871425-1871444 | None:intergenic | 45.0% | |
| GATTGGACAGACAATGGGTA+TGG | - | chr3_3:1871426-1871445 | Msa0437860:CDS | 45.0% | |
| ATGACATGGACGGTAATTGC+AGG | - | chr3_3:1871670-1871689 | Msa0437860:intron | 45.0% | |
| TGACATGGACGGTAATTGCA+GGG | - | chr3_3:1871671-1871690 | Msa0437860:intron | 45.0% | |
| TCTGCATCAAGATCCTCTTC+AGG | + | chr3_3:1871714-1871733 | None:intergenic | 45.0% | |
| GAGAAGATCAAAGGAAGCTG+AGG | - | chr3_3:1871740-1871759 | Msa0437860:intron | 45.0% | |
| GTCACGTCATAACCATAGTC+AGG | + | chr3_3:1871813-1871832 | None:intergenic | 45.0% | |
| !! | AGCTTATTTTCTCCTCGGCT+AGG | + | chr3_3:1871860-1871879 | None:intergenic | 45.0% |
| AGCCGAGGAGAAAATAAGCT+TGG | - | chr3_3:1871860-1871879 | Msa0437860:CDS | 45.0% | |
| CAGATGCTCTGTCAGCAATT+TGG | + | chr3_3:1871914-1871933 | None:intergenic | 45.0% | |
| GAATGAGATGCAGTCAGCAT+TGG | - | chr3_3:1872001-1872020 | Msa0437860:CDS | 45.0% | |
| ! | GTCAGCATTGGAGAAGGAAT+TGG | - | chr3_3:1872013-1872032 | Msa0437860:CDS | 45.0% |
| CATTGGAGAAGGAATTGGAC+AGG | - | chr3_3:1872018-1872037 | Msa0437860:CDS | 45.0% | |
| AGTACCAGTCAGAAGAGCAA+AGG | - | chr3_3:1872072-1872091 | Msa0437860:CDS | 45.0% | |
| ACATACTGACCAACAGCTCA+AGG | - | chr3_3:1872196-1872215 | Msa0437860:CDS | 45.0% | |
| TAGTCAACACCTTGAGCTGT+TGG | + | chr3_3:1872208-1872227 | None:intergenic | 45.0% | |
| !! | GCTCAAGGTGTTGACTAGTA+AGG | - | chr3_3:1872211-1872230 | Msa0437860:CDS | 45.0% |
| TATCAATGCTCTCCACAGAC+TGG | + | chr3_3:1872469-1872488 | None:intergenic | 45.0% | |
| AAATGCAGATGGAGCTGATG+AGG | - | chr3_3:1872501-1872520 | Msa0437860:CDS | 45.0% | |
| GATGGAGCTGATGAGGTTAA+CGG | - | chr3_3:1872508-1872527 | Msa0437860:CDS | 45.0% | |
| ATGGAGCTGATGAGGTTAAC+GGG | - | chr3_3:1872509-1872528 | Msa0437860:CDS | 45.0% | |
| ATCAGTCTTGAGAAGGGAGT+TGG | - | chr3_3:1872538-1872557 | Msa0437860:CDS | 45.0% | |
| GGAATCACACAAGTTTGAGG+AGG | - | chr3_3:1872559-1872578 | Msa0437860:CDS | 45.0% | |
| CTTTGCCATCACCTTTCAAC+CGG | + | chr3_3:1872619-1872638 | None:intergenic | 45.0% | |
| TAGACAAAGAACTATGCGCC+CGG | - | chr3_3:1872663-1872682 | Msa0437860:CDS | 45.0% | |
| ATCTGCTGCCTTCAGAATCA+AGG | - | chr3_3:1872686-1872705 | Msa0437860:CDS | 45.0% | |
| TGGACTCAAAAGTGGAACTG+AGG | - | chr3_3:1872835-1872854 | Msa0437860:CDS | 45.0% | |
| GGACTCAAAAGTGGAACTGA+GGG | - | chr3_3:1872836-1872855 | Msa0437860:CDS | 45.0% | |
| GACTCAAAAGTGGAACTGAG+GGG | - | chr3_3:1872837-1872856 | Msa0437860:CDS | 45.0% | |
| TGAGCTTAAAGCGGAACGTT+TGG | - | chr3_3:1873136-1873155 | Msa0437860:CDS | 45.0% | |
| CAGCTTGTATCTGCTCAACT+TGG | + | chr3_3:1873202-1873221 | None:intergenic | 45.0% | |
| !! | CTGAACTTGCTACAGCAGTA+AGG | - | chr3_3:1873219-1873238 | Msa0437860:CDS | 45.0% |
| !! | GAACTTGCTACAGCAGTAAG+GGG | - | chr3_3:1873221-1873240 | Msa0437860:CDS | 45.0% |
| !! | ATCACTCTAAAACCTGCTGC+TGG | + | chr3_3:1873542-1873561 | None:intergenic | 45.0% |
| CTAACCTTGTAACTGCTAGC+AGG | - | chr3_3:1873833-1873852 | Msa0437860:CDS | 45.0% | |
| GGCTTGAGAAAGATTTGGCA+CGG | - | chr3_3:1873854-1873873 | Msa0437860:CDS | 45.0% | |
| ! | CTTTAGGTGCAATGATGGTG+TGG | + | chr3_3:1873970-1873989 | None:intergenic | 45.0% |
| AAACATAATGCCACGGGCAA+TGG | - | chr3_3:1873997-1874016 | Msa0437860:CDS | 45.0% | |
| AACCGAGATGTCATGTCTCA+TGG | + | chr3_3:1874208-1874227 | None:intergenic | 45.0% | |
| ATGAGACATGACATCTCGGT+TGG | - | chr3_3:1874207-1874226 | Msa0437860:intron | 45.0% | |
| CGGGAACCTTTCGTTCATAT+AGG | + | chr3_3:1874290-1874309 | None:intergenic | 45.0% | |
| TGGTTTCTTGTACTCGTCGA+TGG | + | chr3_3:1874334-1874353 | None:intergenic | 45.0% | |
| ! | ACACAACCCTCTCCTTTTAG+TGG | - | chr3_3:1874477-1874496 | Msa0437860:intron | 45.0% |
| ! | CACAACCCTCTCCTTTTAGT+GGG | - | chr3_3:1874478-1874497 | Msa0437860:intron | 45.0% |
| ACTCTTGAAGATCCCGTTGA+AGG | + | chr3_3:1874648-1874667 | None:intergenic | 45.0% | |
| GGGATCTTCAAGAGTCTACA+AGG | - | chr3_3:1874653-1874672 | Msa0437860:intron | 45.0% | |
| AGAGGAGAGGGATAAGTTGT+GGG | - | chr3_3:1874714-1874733 | Msa0437860:five_prime_UTR | 45.0% | |
| GACAAAAGACCCTGTCTCTA+TGG | - | chr3_3:1874871-1874890 | Msa0437860:intron | 45.0% | |
| ! | GTGCTGGTCCAAACCTTAGA+AGG | - | chr3_3:1870814-1870833 | Msa0437860:intron | 50.0% |
| GTCCAAACCTTAGAAGGAGC+AGG | - | chr3_3:1870820-1870839 | Msa0437860:intron | 50.0% | |
| !! | GACCTGCTCCTTCTAAGGTT+TGG | + | chr3_3:1870825-1870844 | None:intergenic | 50.0% |
| AAGGAGCAGGTCAATGTCCT+CGG | - | chr3_3:1870833-1870852 | Msa0437860:intron | 50.0% | |
| GCAGACACTGCAGATTGTGT+TGG | + | chr3_3:1871084-1871103 | None:intergenic | 50.0% | |
| CTGCTGTCCAAAATTCCCAG+AGG | - | chr3_3:1871100-1871119 | Msa0437860:intron | 50.0% | |
| !! | TCTCGCACCTCTGGGAATTT+TGG | + | chr3_3:1871110-1871129 | None:intergenic | 50.0% |
| TGATGGGGAACAACAGCTAG+AGG | - | chr3_3:1871224-1871243 | Msa0437860:intron | 50.0% | |
| AGCTAGAGGAAAGTAGACCC+AGG | - | chr3_3:1871238-1871257 | Msa0437860:intron | 50.0% | |
| TTCCTCTGTGAACTGCTCCT+GGG | + | chr3_3:1871258-1871277 | None:intergenic | 50.0% | |
| ATTCCTCTGTGAACTGCTCC+TGG | + | chr3_3:1871259-1871278 | None:intergenic | 50.0% | |
| AGGAGCAGTTCACAGAGGAA+TGG | - | chr3_3:1871258-1871277 | Msa0437860:intron | 50.0% | |
| CAGAGGAATGGCAGTAGACA+TGG | - | chr3_3:1871270-1871289 | Msa0437860:intron | 50.0% | |
| CTTGGGATGAGGAACGAAGA+CGG | + | chr3_3:1871407-1871426 | None:intergenic | 50.0% | |
| GTCTGTCCAATCTTGGGATG+AGG | + | chr3_3:1871418-1871437 | None:intergenic | 50.0% | |
| GACATGGACGGTAATTGCAG+GGG | - | chr3_3:1871672-1871691 | Msa0437860:intron | 50.0% | |
| GACAATCAGAAACCTAGCCG+AGG | - | chr3_3:1871845-1871864 | Msa0437860:CDS | 50.0% | |
| ! | GATGCAGTCAGCATTGGAGA+AGG | - | chr3_3:1872007-1872026 | Msa0437860:CDS | 50.0% |
| TGGAGAAGGAATTGGACAGG+AGG | - | chr3_3:1872021-1872040 | Msa0437860:CDS | 50.0% | |
| GAAGCCTTTGCTCTTCTGAC+TGG | + | chr3_3:1872079-1872098 | None:intergenic | 50.0% | |
| ! | ATTCTGAAGGCAGCAGATCC+GGG | + | chr3_3:1872684-1872703 | None:intergenic | 50.0% |
| ! | GATTCTGAAGGCAGCAGATC+CGG | + | chr3_3:1872685-1872704 | None:intergenic | 50.0% |
| GTGGAACTGAGGGGTTAACA+AGG | - | chr3_3:1872846-1872865 | Msa0437860:CDS | 50.0% | |
| ACTCGTGAGACGCAGTTGAA+AGG | + | chr3_3:1873289-1873308 | None:intergenic | 50.0% | |
| GGTGACAGACCTGAAGTTCA+AGG | + | chr3_3:1873319-1873338 | None:intergenic | 50.0% | |
| CAAGCCTGCTAGCAGTTACA+AGG | + | chr3_3:1873840-1873859 | None:intergenic | 50.0% | |
| CTGCATGACAAAGCCCATAG+AGG | - | chr3_3:1874027-1874046 | Msa0437860:CDS | 50.0% | |
| CATGACATCTCGGTTGGCAT+TGG | - | chr3_3:1874213-1874232 | Msa0437860:intron | 50.0% | |
| !! | TGCCAAAAGTGTCAGAGGAG+AGG | - | chr3_3:1874701-1874720 | Msa0437860:five_prime_UTR | 50.0% |
| !! | GCCAAAAGTGTCAGAGGAGA+GGG | - | chr3_3:1874702-1874721 | Msa0437860:five_prime_UTR | 50.0% |
| ! | TCCCTCTCCTCTGACACTTT+TGG | + | chr3_3:1874706-1874725 | None:intergenic | 50.0% |
| CAGAGGAGAGGGATAAGTTG+TGG | - | chr3_3:1874713-1874732 | Msa0437860:five_prime_UTR | 50.0% | |
| TCAGGACTCCCATAGAGACA+GGG | + | chr3_3:1874883-1874902 | None:intergenic | 50.0% | |
| ATCAGGACTCCCATAGAGAC+AGG | + | chr3_3:1874884-1874903 | None:intergenic | 50.0% | |
| AGATCGTCTGCATCTAGCGG+TGG | - | chr3_3:1870639-1870658 | Msa0437860:intron | 55.0% | |
| AATGTCCTCGGCTTCCTTCC+AGG | - | chr3_3:1870845-1870864 | Msa0437860:intron | 55.0% | |
| TTTGACCTGGAAGGAAGCCG+AGG | + | chr3_3:1870853-1870872 | None:intergenic | 55.0% | |
| AGCAGGTTTCTCGCACCTCT+GGG | + | chr3_3:1871118-1871137 | None:intergenic | 55.0% | |
| TAGCAGGTTTCTCGCACCTC+TGG | + | chr3_3:1871119-1871138 | None:intergenic | 55.0% | |
| ! | TGCTGACAGAGCATCTGCCA+AGG | - | chr3_3:1871917-1871936 | Msa0437860:CDS | 55.0% |
| TGGACAGGAGGTCAAGTGAC+TGG | - | chr3_3:1872033-1872052 | Msa0437860:CDS | 55.0% | |
| ! | GGGCTTTGTCATGCAGCCAT+AGG | + | chr3_3:1874023-1874042 | None:intergenic | 55.0% |
| GACCCAGGAGCAGTTCACAG+AGG | - | chr3_3:1871253-1871272 | Msa0437860:intron | 60.0% | |
| ATGCCACGGGCAATGGCCTA+TGG | - | chr3_3:1874004-1874023 | Msa0437860:CDS | 60.0% | |
| CAGCCATAGGCCATTGCCCG+TGG | + | chr3_3:1874010-1874029 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 1869576 | 1875145 | 1869576 | ID=Msa0437860;Name=Msa0437860 |
| chr3_3 | mRNA | 1869576 | 1875145 | 1869576 | ID=Msa0437860-mRNA-1;Parent=Msa0437860;Name=Msa0437860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=227|1|1|1|0.6|0.5|6|224|917 |
| chr3_3 | exon | 1869576 | 1870105 | 1869576 | ID=Msa0437860-mRNA-1:exon:341;Parent=Msa0437860-mRNA-1 |
| chr3_3 | exon | 1871393 | 1871599 | 1871393 | ID=Msa0437860-mRNA-1:exon:340;Parent=Msa0437860-mRNA-1 |
| chr3_3 | exon | 1871757 | 1873674 | 1871757 | ID=Msa0437860-mRNA-1:exon:339;Parent=Msa0437860-mRNA-1 |
| chr3_3 | exon | 1873781 | 1874204 | 1873781 | ID=Msa0437860-mRNA-1:exon:338;Parent=Msa0437860-mRNA-1 |
| chr3_3 | exon | 1874697 | 1874744 | 1874697 | ID=Msa0437860-mRNA-1:exon:337;Parent=Msa0437860-mRNA-1 |
| chr3_3 | exon | 1875068 | 1875145 | 1875068 | ID=Msa0437860-mRNA-1:exon:336;Parent=Msa0437860-mRNA-1 |
| chr3_3 | five_prime_UTR | 1875068 | 1875145 | 1875068 | ID=Msa0437860-mRNA-1:five_prime_utr;Parent=Msa0437860-mRNA-1 |
| chr3_3 | five_prime_UTR | 1874697 | 1874744 | 1874697 | ID=Msa0437860-mRNA-1:five_prime_utr;Parent=Msa0437860-mRNA-1 |
| chr3_3 | five_prime_UTR | 1874104 | 1874204 | 1874104 | ID=Msa0437860-mRNA-1:five_prime_utr;Parent=Msa0437860-mRNA-1 |
| chr3_3 | CDS | 1873781 | 1874103 | 1873781 | ID=Msa0437860-mRNA-1:cds;Parent=Msa0437860-mRNA-1 |
| chr3_3 | CDS | 1871757 | 1873674 | 1871757 | ID=Msa0437860-mRNA-1:cds;Parent=Msa0437860-mRNA-1 |
| chr3_3 | CDS | 1871393 | 1871599 | 1871393 | ID=Msa0437860-mRNA-1:cds;Parent=Msa0437860-mRNA-1 |
| chr3_3 | CDS | 1869800 | 1870105 | 1869800 | ID=Msa0437860-mRNA-1:cds;Parent=Msa0437860-mRNA-1 |
| chr3_3 | three_prime_UTR | 1869576 | 1869799 | 1869576 | ID=Msa0437860-mRNA-1:three_prime_utr;Parent=Msa0437860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
