Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046730 | XP_003626013.1 | 99.176 | 728 | 2 | 1 | 1 | 728 | 1 | 724 | 0.0 | 1481 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046730 | sp|Q9M1P7|BOR2_ARATH | 81.935 | 703 | 111 | 6 | 1 | 701 | 1 | 689 | 0.0 | 1165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046730 | G7KTQ1 | 99.176 | 728 | 2 | 1 | 1 | 728 | 1 | 724 | 0.0 | 1481 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046730 | Msa0143450 | 0.936979 | 7.280563e-98 | -8.615850e-47 |
| Msa0046730 | Msa0606120 | 0.815648 | 8.300017e-52 | -8.615850e-47 |
| Msa0046730 | Msa1082720 | 0.928781 | 1.774379e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046730 | MtrunA17_Chr7g0270341 | 99.176 | 728 | 2 | 1 | 1 | 728 | 1 | 724 | 0.0 | 1481 |
| Msa0046730 | MtrunA17_Chr3g0117521 | 73.938 | 706 | 163 | 8 | 1 | 702 | 1 | 689 | 0.0 | 1008 |
| Msa0046730 | MtrunA17_Chr2g0293661 | 74.169 | 662 | 164 | 3 | 1 | 662 | 1 | 655 | 0.0 | 1000 |
| Msa0046730 | MtrunA17_Chr3g0138161 | 57.703 | 688 | 255 | 8 | 7 | 683 | 4 | 666 | 0.0 | 782 |
| Msa0046730 | MtrunA17_Chr2g0332471 | 58.912 | 662 | 249 | 8 | 1 | 654 | 5 | 651 | 0.0 | 775 |
| Msa0046730 | MtrunA17_Chr2g0332351 | 58.735 | 664 | 251 | 8 | 1 | 656 | 5 | 653 | 0.0 | 773 |
| Msa0046730 | MtrunA17_Chr2g0332331 | 58.584 | 664 | 252 | 8 | 1 | 656 | 5 | 653 | 0.0 | 773 |
| Msa0046730 | MtrunA17_Chr1g0148971 | 55.606 | 660 | 263 | 6 | 7 | 654 | 20 | 661 | 0.0 | 741 |
| Msa0046730 | MtrunA17_Chr2g0332441 | 59.833 | 600 | 221 | 6 | 42 | 635 | 2 | 587 | 0.0 | 724 |
| Msa0046730 | MtrunA17_Chr2g0332491 | 53.869 | 659 | 202 | 6 | 1 | 654 | 5 | 566 | 0.0 | 678 |
| Msa0046730 | MtrunA17_Chr2g0332391 | 56.077 | 362 | 142 | 5 | 175 | 533 | 1 | 348 | 7.75e-137 | 406 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046730 | AT3G62270.1 | 81.935 | 703 | 111 | 6 | 1 | 701 | 1 | 689 | 0.0 | 1165 |
| Msa0046730 | AT2G47160.1 | 80.000 | 725 | 123 | 8 | 1 | 724 | 1 | 704 | 0.0 | 1150 |
| Msa0046730 | AT2G47160.2 | 77.333 | 750 | 123 | 9 | 1 | 724 | 1 | 729 | 0.0 | 1137 |
| Msa0046730 | AT3G06450.3 | 71.933 | 652 | 171 | 5 | 3 | 653 | 5 | 645 | 0.0 | 977 |
| Msa0046730 | AT3G06450.1 | 71.933 | 652 | 171 | 5 | 3 | 653 | 5 | 645 | 0.0 | 977 |
| Msa0046730 | AT3G06450.2 | 71.933 | 652 | 171 | 5 | 3 | 653 | 5 | 645 | 0.0 | 977 |
| Msa0046730 | AT3G06450.4 | 71.933 | 652 | 171 | 5 | 3 | 653 | 5 | 645 | 0.0 | 977 |
| Msa0046730 | AT1G15460.2 | 59.520 | 667 | 254 | 7 | 8 | 667 | 13 | 670 | 0.0 | 818 |
| Msa0046730 | AT1G15460.1 | 59.520 | 667 | 254 | 7 | 8 | 667 | 13 | 670 | 0.0 | 818 |
| Msa0046730 | AT1G15460.3 | 61.990 | 613 | 224 | 4 | 8 | 619 | 13 | 617 | 0.0 | 801 |
| Msa0046730 | AT1G74810.7 | 56.949 | 662 | 269 | 5 | 1 | 654 | 1 | 654 | 0.0 | 786 |
| Msa0046730 | AT1G74810.4 | 56.949 | 662 | 269 | 5 | 1 | 654 | 1 | 654 | 0.0 | 786 |
| Msa0046730 | AT1G74810.1 | 56.949 | 662 | 269 | 5 | 1 | 654 | 1 | 654 | 0.0 | 786 |
| Msa0046730 | AT5G25430.1 | 56.018 | 673 | 269 | 10 | 7 | 668 | 9 | 665 | 0.0 | 762 |
| Msa0046730 | AT1G74810.6 | 57.624 | 623 | 253 | 4 | 35 | 654 | 8 | 622 | 0.0 | 748 |
| Msa0046730 | AT1G74810.3 | 57.624 | 623 | 253 | 4 | 35 | 654 | 8 | 622 | 0.0 | 748 |
| Msa0046730 | AT4G32510.1 | 53.744 | 681 | 279 | 7 | 1 | 662 | 1 | 664 | 0.0 | 741 |
| Msa0046730 | AT4G32510.2 | 53.324 | 692 | 286 | 8 | 1 | 672 | 1 | 675 | 0.0 | 740 |
| Msa0046730 | AT1G15460.4 | 57.417 | 573 | 228 | 7 | 102 | 667 | 1 | 564 | 0.0 | 668 |
| Msa0046730 | AT1G74810.5 | 55.576 | 556 | 236 | 4 | 102 | 654 | 1 | 548 | 0.0 | 643 |
| Msa0046730 | AT1G74810.2 | 54.913 | 519 | 223 | 4 | 139 | 654 | 1 | 511 | 0.0 | 584 |
Find 196 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCTTCATTTCCAGTTTA+TGG | 0.059987 | 1_1:-79060110 | Msa0046730:three_prime_UTR |
| TTGGGGCTACTTTGCCTTTA+TGG | 0.123064 | 1_1:-79061040 | Msa0046730:CDS |
| TCATTATGATTTGCTCCTTT+TGG | 0.138425 | 1_1:-79061829 | Msa0046730:CDS |
| TGTCTTTCCTTAACCTTCTT+TGG | 0.168286 | 1_1:-79063890 | Msa0046730:five_prime_UTR |
| ACATTATTGTGTGGCCTTAT+TGG | 0.170662 | 1_1:-79061704 | Msa0046730:CDS |
| TGATTCACTTTACAGGATTT+TGG | 0.172961 | 1_1:-79063600 | Msa0046730:intron |
| GTTCCTGTTGTGTTCATAAT+TGG | 0.189623 | 1_1:-79061960 | Msa0046730:CDS |
| AATAATGCTATTGTCTTAAA+AGG | 0.213365 | 1_1:+79060798 | None:intergenic |
| TTGTCTTGGTGTTTGGAATC+AGG | 0.217098 | 1_1:+79060181 | None:intergenic |
| ATTTATCTATTTATATGTTT+TGG | 0.242133 | 1_1:-79060759 | Msa0046730:CDS |
| GCAAGCACATTGTTGTTATT+AGG | 0.266639 | 1_1:-79064156 | Msa0046730:five_prime_UTR |
| TGCTTTGATACTATTCTTAC+TGG | 0.270594 | 1_1:-79062778 | Msa0046730:CDS |
| ACCTGACAATCTCATTTCTT+TGG | 0.287431 | 1_1:+79060225 | None:intergenic |
| CTATTCTTACTGGCCATCTT+AGG | 0.291093 | 1_1:-79062768 | Msa0046730:CDS |
| CTTTCCCAAAACTGGTTTCC+AGG | 0.295534 | 1_1:+79061003 | None:intergenic |
| TAAACTTTCAATTGCCATAA+AGG | 0.296865 | 1_1:+79061026 | None:intergenic |
| AATACCAACTTCAGTACTTT+GGG | 0.301075 | 1_1:-79061058 | Msa0046730:CDS |
| TTATTTCTTGTCTTGGTGTT+TGG | 0.301293 | 1_1:+79060174 | None:intergenic |
| GCGCCGGGCGACCACGGATT+TGG | 0.306746 | 1_1:+79062128 | None:intergenic |
| AAAGGATCCTTTCCCAAAAC+TGG | 0.307317 | 1_1:+79060995 | None:intergenic |
| CATTCAAGCAGCTACGAGTA+TGG | 0.307917 | 1_1:-79061235 | Msa0046730:CDS |
| AATCTCATTTCTTTGGTCAT+TGG | 0.313846 | 1_1:+79060232 | None:intergenic |
| TTCGCTTTGGTCCTTTCATT+TGG | 0.315725 | 1_1:-79062420 | Msa0046730:CDS |
| GTTTACCTGGAAACCAGTTT+TGG | 0.316421 | 1_1:-79061008 | Msa0046730:CDS |
| GGAGTGGAGCTATTGATCTT+TGG | 0.338665 | 1_1:+79060370 | None:intergenic |
| GCAATACCTGTCATTTCATT+TGG | 0.339007 | 1_1:-79063548 | Msa0046730:CDS |
| GATTTCGTATCTTCTCTCTT+TGG | 0.340460 | 1_1:+79062483 | None:intergenic |
| CGACTATGGTGTGCCACTTA+TGG | 0.341912 | 1_1:-79062225 | Msa0046730:CDS |
| CTTCGTGGAGGTTTGCTAAT+GGG | 0.346782 | 1_1:-79062446 | Msa0046730:CDS |
| AAAACATATAAATAGATAAA+TGG | 0.347506 | 1_1:+79060761 | None:intergenic |
| CGTTGTTCCTTTACCTCAAC+AGG | 0.355491 | 1_1:+79061147 | None:intergenic |
| GATTAACAGCAATCTGAGTT+TGG | 0.355558 | 1_1:-79060481 | Msa0046730:intron |
| CAAGAAGCCGTGGTGAATTT+AGG | 0.358792 | 1_1:-79060408 | Msa0046730:CDS |
| CCTTCGTGGAGGTTTGCTAA+TGG | 0.359784 | 1_1:-79062447 | Msa0046730:CDS |
| AACCGCTTTACCCGAATTGC+GGG | 0.360056 | 1_1:-79062729 | Msa0046730:CDS |
| TTGGGTAGAAACCTGTTTCT+TGG | 0.364718 | 1_1:-79063217 | Msa0046730:CDS |
| TCTTAAATTATTTCTTGTCT+TGG | 0.364780 | 1_1:+79060167 | None:intergenic |
| TGCCACTTATGGTCCTAGTT+TGG | 0.369045 | 1_1:-79062214 | Msa0046730:CDS |
| TGCGGTATGACTCCGTTTGC+AGG | 0.370416 | 1_1:+79061674 | None:intergenic |
| CAAACAACTCTCCCGCAATT+CGG | 0.374938 | 1_1:+79062718 | None:intergenic |
| CGAATTGCGGGAGAGTTGTT+TGG | 0.375063 | 1_1:-79062717 | Msa0046730:CDS |
| TTCTTTGGTCATTGGACTGT+TGG | 0.381083 | 1_1:+79060240 | None:intergenic |
| GGGAGAAAGTATTGTCTTAG+TGG | 0.386465 | 1_1:+79060678 | None:intergenic |
| TTAGGATCATTTCTTGGTGT+TGG | 0.387898 | 1_1:+79060349 | None:intergenic |
| AAATACCAACTTCAGTACTT+TGG | 0.388661 | 1_1:-79061059 | Msa0046730:CDS |
| TGCTAATGGGATGTTCGCTT+TGG | 0.391611 | 1_1:-79062433 | Msa0046730:CDS |
| TTGCAGGAGGAATTCCAATA+AGG | 0.392276 | 1_1:+79061690 | None:intergenic |
| CGCCCGGCGCATATGACAAT+TGG | 0.395913 | 1_1:-79062115 | Msa0046730:CDS |
| TTTCCCACCAAAGAAGGTTA+AGG | 0.399439 | 1_1:+79063883 | None:intergenic |
| GCACACCATAGTCGGCTATA+AGG | 0.404541 | 1_1:+79062234 | None:intergenic |
| ATCAGTAAGAATGCTAGTTT+AGG | 0.405750 | 1_1:-79061460 | Msa0046730:CDS |
| CAGCTGCATCCAAGTCTTGA+AGG | 0.411041 | 1_1:+79060634 | None:intergenic |
| TGCTAAAGAAAGACCTGAGT+TGG | 0.415592 | 1_1:-79063236 | Msa0046730:CDS |
| TGACAATTGGACTGTTGTTA+AGG | 0.417329 | 1_1:-79062102 | Msa0046730:CDS |
| ATATAAATAGATAAATGGTT+TGG | 0.420632 | 1_1:+79060766 | None:intergenic |
| AACCTGTTTCTTGGATGGGC+TGG | 0.422896 | 1_1:-79063208 | Msa0046730:CDS |
| AGGCGCCTTGGGATACCGTT+TGG | 0.423298 | 1_1:+79062158 | None:intergenic |
| GCTAGTTTAGGACAGTTATA+CGG | 0.423941 | 1_1:-79061448 | Msa0046730:CDS |
| TGTCTTGGTGTTTGGAATCA+GGG | 0.423999 | 1_1:+79060182 | None:intergenic |
| CATACTCGTAGCTGCTTGAA+TGG | 0.424821 | 1_1:+79061236 | None:intergenic |
| AAAATTAAAGAACCATAAAC+TGG | 0.426033 | 1_1:+79060098 | None:intergenic |
| CTTTCCTTAACCTTCTTTGG+TGG | 0.427045 | 1_1:-79063887 | Msa0046730:five_prime_UTR |
| TTGGACTAAAGAGGCGCCTT+GGG | 0.427252 | 1_1:+79062147 | None:intergenic |
| GAGTTTATATAACAATTGTA+TGG | 0.427377 | 1_1:-79059860 | Msa0046730:three_prime_UTR |
| ACCAAAGAAATGAGATTGTC+AGG | 0.428973 | 1_1:-79060226 | Msa0046730:CDS |
| TACATACACCTGTTGTATAT+AGG | 0.431011 | 1_1:+79060035 | None:intergenic |
| ACACTTTGTTGTGATTTGTT+TGG | 0.434386 | 1_1:-79063920 | Msa0046730:five_prime_UTR |
| CTAACTTGGGTACCTATTGC+TGG | 0.436565 | 1_1:-79060735 | Msa0046730:CDS |
| AGCACTGCAATCATAGTTGC+TGG | 0.439606 | 1_1:+79061927 | None:intergenic |
| CTCATTATCCTATATACAAC+AGG | 0.439784 | 1_1:-79060043 | Msa0046730:three_prime_UTR |
| GGAAACATGACTCCAGCAAT+AGG | 0.440092 | 1_1:+79060723 | None:intergenic |
| TCGGTGCTGTGAAAAGTAAA+AGG | 0.440388 | 1_1:+79060977 | None:intergenic |
| AAACAACTCTCCCGCAATTC+GGG | 0.442782 | 1_1:+79062719 | None:intergenic |
| CTTGCTTCCTGTTGAGGTAA+AGG | 0.444141 | 1_1:-79061154 | Msa0046730:CDS |
| AGTCCTCGGTCTGGCGTAAG+AGG | 0.444825 | 1_1:-79060265 | Msa0046730:CDS |
| AGGTTGGCTTCAAAGACATA+TGG | 0.445651 | 1_1:+79064068 | None:intergenic |
| TAACTTGCTTCAATCAGTAT+TGG | 0.448829 | 1_1:-79061118 | Msa0046730:CDS |
| GTAGAAACCTGTTTCTTGGA+TGG | 0.449097 | 1_1:-79063213 | Msa0046730:CDS |
| GAACAACTAGAGAGAAATAC+TGG | 0.450622 | 1_1:-79063524 | Msa0046730:intron |
| ATCCAGCCCATCCAAGAAAC+AGG | 0.452822 | 1_1:+79063206 | None:intergenic |
| TAATGTGCTACAAGCAAGAT+TGG | 0.456259 | 1_1:-79063791 | Msa0046730:CDS |
| CTTCAATCAGTATTGGTTGG+AGG | 0.463638 | 1_1:-79061111 | Msa0046730:CDS |
| GGAGCTGGTGCTTCTCATAT+CGG | 0.465563 | 1_1:-79060460 | Msa0046730:CDS |
| AAGGCTAGATCATGGCGTTA+TGG | 0.470484 | 1_1:-79062369 | Msa0046730:CDS |
| ATGGCAATTGAAAGTTTACC+TGG | 0.470571 | 1_1:-79061021 | Msa0046730:CDS |
| TTTCCTTAACCTTCTTTGGT+GGG | 0.471292 | 1_1:-79063886 | Msa0046730:five_prime_UTR |
| GCTCCAATTATGAACACAAC+AGG | 0.475392 | 1_1:+79061957 | None:intergenic |
| ATCATTTCTTGGTGTTGGAG+TGG | 0.476671 | 1_1:+79060354 | None:intergenic |
| CTTGGATGCAGCTGAGTATG+AGG | 0.477776 | 1_1:-79060625 | Msa0046730:CDS |
| TTTGGACTAAAGAGGCGCCT+TGG | 0.478346 | 1_1:+79062146 | None:intergenic |
| TCTAGCAACTCTTAAACATC+AGG | 0.479084 | 1_1:-79061630 | Msa0046730:intron |
| GGCATTATACACTCAATCAT+TGG | 0.482191 | 1_1:-79063328 | Msa0046730:CDS |
| AGTCCAAATCCGTGGTCGCC+CGG | 0.483928 | 1_1:-79062131 | Msa0046730:CDS |
| ATTTACTTGTATCTTCTGCT+CGG | 0.484482 | 1_1:+79060958 | None:intergenic |
| TTGCTTCAATCAGTATTGGT+TGG | 0.485493 | 1_1:-79061114 | Msa0046730:CDS |
| CGTAGCCTTATAGCCGACTA+TGG | 0.485953 | 1_1:-79062239 | Msa0046730:CDS |
| TTTGTGTCTTAGAATGATGT+AGG | 0.486124 | 1_1:-79060143 | Msa0046730:three_prime_UTR |
| TAAGAGGTGTCTGCATTTGA+TGG | 0.489462 | 1_1:+79061407 | None:intergenic |
| TAGAAACCTGTTTCTTGGAT+GGG | 0.489881 | 1_1:-79063212 | Msa0046730:CDS |
| TCGGGTAAAGCGGTTGATGA+TGG | 0.490490 | 1_1:+79062737 | None:intergenic |
| AGATGACTTGCTTCCTGTTG+AGG | 0.490643 | 1_1:-79061160 | Msa0046730:CDS |
| GTCCTTGTGCCAGGGACTTG+TGG | 0.493396 | 1_1:-79062520 | Msa0046730:intron |
| ATTGGAATTCCTCCTGCAAA+CGG | 0.495864 | 1_1:-79061686 | Msa0046730:CDS |
| GTGGAATCAAAGCAGGTGTA+AGG | 0.505469 | 1_1:-79063764 | Msa0046730:intron |
| GCTAAAGAAAGACCTGAGTT+GGG | 0.505588 | 1_1:-79063235 | Msa0046730:CDS |
| AGATCATGGCGTTATGGTAG+TGG | 0.507525 | 1_1:-79062363 | Msa0046730:intron |
| CTTATGGTCCTAGTTTGGAC+AGG | 0.509478 | 1_1:-79062209 | Msa0046730:CDS |
| GAGAATTAAAAGAGAGGTGC+GGG | 0.510378 | 1_1:+79060314 | None:intergenic |
| AGAAATGAGATTGTCAGGTA+GGG | 0.510643 | 1_1:-79060221 | Msa0046730:CDS |
| AAGAGAGGTGCGGGCTCAGA+CGG | 0.517099 | 1_1:+79060323 | None:intergenic |
| CAGCAATCTGAGTTTGGAGC+TGG | 0.517149 | 1_1:-79060475 | Msa0046730:CDS |
| AAGAAATGAGATTGTCAGGT+AGG | 0.518072 | 1_1:-79060222 | Msa0046730:CDS |
| GATCGACTTACTCGAGCAGA+TGG | 0.522727 | 1_1:+79061373 | None:intergenic |
| AGGACACACCTGTCCAAACT+AGG | 0.523221 | 1_1:+79062201 | None:intergenic |
| TAGCCCCAAAGTACTGAAGT+TGG | 0.525039 | 1_1:+79061054 | None:intergenic |
| GATGGGTCCTGGTAAATAAG+AGG | 0.526245 | 1_1:+79061391 | None:intergenic |
| TTACTCGAGCAGATGGGTCC+TGG | 0.527068 | 1_1:+79061380 | None:intergenic |
| TATGGGAAACGTGGACGCCC+CGG | 0.529193 | 1_1:-79061217 | Msa0046730:CDS |
| TCAAATATAGTCTCATCGAC+CGG | 0.529909 | 1_1:+79061198 | None:intergenic |
| ACTGAGCAAAGTCCTCGGTC+TGG | 0.531263 | 1_1:-79060274 | Msa0046730:CDS |
| AGTCCAATTGTCATATGCGC+CGG | 0.534376 | 1_1:+79062112 | None:intergenic |
| ACATATTGAAGTTGATGCCA+AGG | 0.539736 | 1_1:+79063351 | None:intergenic |
| CAAATATAGTCTCATCGACC+GGG | 0.540975 | 1_1:+79061199 | None:intergenic |
| GCTAGACTCTTTGTATGCAT+CGG | 0.543376 | 1_1:+79061647 | None:intergenic |
| ATTCAAGCAGCTACGAGTAT+GGG | 0.543742 | 1_1:-79061234 | Msa0046730:CDS |
| GCCACTCCTAAAATCAGTAA+AGG | 0.544686 | 1_1:+79063298 | None:intergenic |
| GTCCAATTGTCATATGCGCC+GGG | 0.545574 | 1_1:+79062113 | None:intergenic |
| TTATTAGGAACCACTTGAGA+AGG | 0.549474 | 1_1:-79064141 | Msa0046730:five_prime_UTR |
| ATGTGATGATGAATTAATCA+AGG | 0.549636 | 1_1:+79064021 | None:intergenic |
| TGTTCACCAAATGAAATGAC+AGG | 0.550764 | 1_1:+79063542 | None:intergenic |
| TAACAGTTACAATTTGACAT+AGG | 0.550891 | 1_1:+79059994 | None:intergenic |
| AAATCATAATGATAAGAAGA+TGG | 0.551493 | 1_1:+79061840 | None:intergenic |
| GGTTGGCTTCAAAGACATAT+GGG | 0.552167 | 1_1:+79064069 | None:intergenic |
| TCATTCTTGATACCTTCAAA+AGG | 0.552421 | 1_1:+79063828 | None:intergenic |
| TCTAACAGCTGTTCAAACCT+TGG | 0.553634 | 1_1:-79063368 | Msa0046730:CDS |
| ATGCCAGCTGTATCAAAAGC+AGG | 0.559487 | 1_1:+79064112 | None:intergenic |
| GTCCAAACTAGGACCATAAG+TGG | 0.562627 | 1_1:+79062212 | None:intergenic |
| GCAAATAGCATGAATAGTGC+AGG | 0.563740 | 1_1:+79064048 | None:intergenic |
| TGCTACAAGCAAGATTGGAC+AGG | 0.567931 | 1_1:-79063786 | Msa0046730:CDS |
| GGTATCAAGAATGATCTAAG+AGG | 0.570702 | 1_1:-79063819 | Msa0046730:CDS |
| AGGTGCACACCTTCAAGACT+TGG | 0.572324 | 1_1:-79060643 | Msa0046730:CDS |
| TGGACAGGTGGAATCAAAGC+AGG | 0.574832 | 1_1:-79063771 | Msa0046730:CDS |
| GAAATGAGATTGTCAGGTAG+GGG | 0.575756 | 1_1:-79060220 | Msa0046730:CDS |
| GTGTCTTAGAATGATGTAGG+AGG | 0.575829 | 1_1:-79060140 | Msa0046730:three_prime_UTR |
| TAAGGAGAAGGCCAAATGAA+AGG | 0.576331 | 1_1:+79062409 | None:intergenic |
| CAATATATCTTACCGATGCA+AGG | 0.577470 | 1_1:+79060580 | None:intergenic |
| CAACCGCTTTACCCGAATTG+CGG | 0.578492 | 1_1:-79062730 | Msa0046730:CDS |
| GATGGAACATGCTCCTAAGA+TGG | 0.580149 | 1_1:+79062755 | None:intergenic |
| ACTAAGAGCATGATCATCAA+AGG | 0.581858 | 1_1:+79060702 | None:intergenic |
| TGTTTCTTGGATGGGCTGGA+TGG | 0.584884 | 1_1:-79063204 | Msa0046730:intron |
| AAAGCAGAAAGGCTAGATCA+TGG | 0.585011 | 1_1:-79062377 | Msa0046730:CDS |
| TTGGCATCAACTTCAATATG+TGG | 0.585839 | 1_1:-79063349 | Msa0046730:CDS |
| TGCTGGAAGACATTATTGTG+TGG | 0.586710 | 1_1:-79061713 | Msa0046730:intron |
| CATAAGTGGCACACCATAGT+CGG | 0.587251 | 1_1:+79062226 | None:intergenic |
| GCAGACACCTCTTATTTACC+AGG | 0.589449 | 1_1:-79061398 | Msa0046730:CDS |
| ACCACGGATTTGGACTAAAG+AGG | 0.593964 | 1_1:+79062138 | None:intergenic |
| TGTTTGGAATCAGGGTTGAG+AGG | 0.594019 | 1_1:+79060190 | None:intergenic |
| TTTACCGTTCAACCTTGCAT+CGG | 0.594284 | 1_1:-79060592 | Msa0046730:intron |
| TCATATGCGCCGGGCGACCA+CGG | 0.597510 | 1_1:+79062122 | None:intergenic |
| AACAGGTTTCTACCCAACTC+AGG | 0.597836 | 1_1:+79063223 | None:intergenic |
| CACAAACAAACTGAGGAAGT+AGG | 0.599980 | 1_1:+79063990 | None:intergenic |
| CTCCCGCAATTCGGGTAAAG+CGG | 0.606782 | 1_1:+79062727 | None:intergenic |
| CTTACCGATGCAAGGTTGAA+CGG | 0.608240 | 1_1:+79060588 | None:intergenic |
| TCGCGACTGAGCAAAGTCCT+CGG | 0.608512 | 1_1:-79060279 | Msa0046730:CDS |
| GGTGCTTCTCATATCGGAGA+AGG | 0.609058 | 1_1:-79060454 | Msa0046730:CDS |
| AGTATACTGTATAATGACAC+TGG | 0.615417 | 1_1:+79064253 | None:intergenic |
| CAGGTTGTGACCTTCTCAAG+TGG | 0.616469 | 1_1:+79064131 | None:intergenic |
| ATACCAACTTCAGTACTTTG+GGG | 0.618229 | 1_1:-79061057 | Msa0046730:CDS |
| CCGTTTGGAACACTTGCAGT+CGG | 0.622641 | 1_1:+79062173 | None:intergenic |
| TCAAGAATGATCTAAGAGGA+AGG | 0.623945 | 1_1:-79063815 | Msa0046730:CDS |
| CCGACTGCAAGTGTTCCAAA+CGG | 0.624889 | 1_1:-79062173 | Msa0046730:CDS |
| GTGTTCCAAACGGTATCCCA+AGG | 0.628714 | 1_1:-79062163 | Msa0046730:CDS |
| AATGTGTACATGATCACAGT+AGG | 0.629188 | 1_1:+79063271 | None:intergenic |
| CTTACTGATACTGTTTCGAG+CGG | 0.639834 | 1_1:+79061474 | None:intergenic |
| GAAGTTATCACAAGAAGCCG+TGG | 0.642922 | 1_1:-79060418 | Msa0046730:CDS |
| ATTATACACTCAATCATTGG+TGG | 0.645714 | 1_1:-79063325 | Msa0046730:CDS |
| CGAGAATTAAAAGAGAGGTG+CGG | 0.646333 | 1_1:+79060313 | None:intergenic |
| GTGACAAATGATTAGGCACA+AGG | 0.648110 | 1_1:-79061282 | Msa0046730:intron |
| TACAAGCAAGATTGGACAGG+TGG | 0.649360 | 1_1:-79063783 | Msa0046730:CDS |
| ATCGACTTACTCGAGCAGAT+GGG | 0.649721 | 1_1:+79061374 | None:intergenic |
| CTGTTTCAACAAAAGTAGCA+TGG | 0.650562 | 1_1:+79060823 | None:intergenic |
| GCCTCTTTAGTCCAAATCCG+TGG | 0.651698 | 1_1:-79062139 | Msa0046730:CDS |
| ATAGCATGAATAGTGCAGGT+TGG | 0.657205 | 1_1:+79064052 | None:intergenic |
| AACACTTGCAGTCGGCATGT+AGG | 0.670569 | 1_1:+79062181 | None:intergenic |
| TTTGTATGCATCGGAGACTG+CGG | 0.679679 | 1_1:+79061656 | None:intergenic |
| AAATATAGTCTCATCGACCG+GGG | 0.685107 | 1_1:+79061200 | None:intergenic |
| GGTATGACTCCGTTTGCAGG+AGG | 0.685848 | 1_1:+79061677 | None:intergenic |
| GTTTAATCACAAACAAACTG+AGG | 0.691326 | 1_1:+79063983 | None:intergenic |
| GTGCCTCTTACGCCAGACCG+AGG | 0.694511 | 1_1:+79060262 | None:intergenic |
| TAGTATGCCTAAATTCACCA+CGG | 0.697327 | 1_1:+79060401 | None:intergenic |
| CCACACGAGAATTAAAAGAG+AGG | 0.699754 | 1_1:+79060308 | None:intergenic |
| AGCTACGAGTATGGGAAACG+TGG | 0.712689 | 1_1:-79061226 | Msa0046730:CDS |
| TTATTACTTTGACCACAGTG+TGG | 0.712922 | 1_1:-79061904 | Msa0046730:CDS |
| CCATTAGCAAACCTCCACGA+AGG | 0.724265 | 1_1:+79062447 | None:intergenic |
| TGATGATGAATTAATCAAGG+AGG | 0.778516 | 1_1:+79064024 | None:intergenic |
| AAAGCTGAGATGCCACACTG+TGG | 0.814882 | 1_1:+79061892 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 79059847 | 79064303 | 79059847 | ID=Msa0046730;Name=Msa0046730 |
| chr1_1 | mRNA | 79059847 | 79064303 | 79059847 | ID=Msa0046730-mRNA-1;Parent=Msa0046730;Name=Msa0046730-mRNA-1;_AED=0.08;_eAED=0.08;_QI=407|0.91|0.92|1|0.91|0.84|13|327|728 |
| chr1_1 | exon | 79059847 | 79060494 | 79059847 | ID=Msa0046730-mRNA-1:exon:27246;Parent=Msa0046730-mRNA-1 |
| chr1_1 | exon | 79060593 | 79060860 | 79060593 | ID=Msa0046730-mRNA-1:exon:27245;Parent=Msa0046730-mRNA-1 |
| chr1_1 | exon | 79060964 | 79061289 | 79060964 | ID=Msa0046730-mRNA-1:exon:27244;Parent=Msa0046730-mRNA-1 |
| chr1_1 | exon | 79061384 | 79061521 | 79061384 | ID=Msa0046730-mRNA-1:exon:27243;Parent=Msa0046730-mRNA-1 |
| chr1_1 | exon | 79061631 | 79061726 | 79061631 | ID=Msa0046730-mRNA-1:exon:27242;Parent=Msa0046730-mRNA-1 |
| chr1_1 | exon | 79061821 | 79061994 | 79061821 | ID=Msa0046730-mRNA-1:exon:27241;Parent=Msa0046730-mRNA-1 |
| chr1_1 | exon | 79062091 | 79062269 | 79062091 | ID=Msa0046730-mRNA-1:exon:27240;Parent=Msa0046730-mRNA-1 |
| chr1_1 | exon | 79062364 | 79062529 | 79062364 | ID=Msa0046730-mRNA-1:exon:27239;Parent=Msa0046730-mRNA-1 |
| chr1_1 | exon | 79062677 | 79062815 | 79062677 | ID=Msa0046730-mRNA-1:exon:27238;Parent=Msa0046730-mRNA-1 |
| chr1_1 | exon | 79063205 | 79063397 | 79063205 | ID=Msa0046730-mRNA-1:exon:27237;Parent=Msa0046730-mRNA-1 |
| chr1_1 | exon | 79063525 | 79063607 | 79063525 | ID=Msa0046730-mRNA-1:exon:27236;Parent=Msa0046730-mRNA-1 |
| chr1_1 | exon | 79063765 | 79064231 | 79063765 | ID=Msa0046730-mRNA-1:exon:27235;Parent=Msa0046730-mRNA-1 |
| chr1_1 | exon | 79064260 | 79064303 | 79064260 | ID=Msa0046730-mRNA-1:exon:27234;Parent=Msa0046730-mRNA-1 |
| chr1_1 | five_prime_UTR | 79064260 | 79064303 | 79064260 | ID=Msa0046730-mRNA-1:five_prime_utr;Parent=Msa0046730-mRNA-1 |
| chr1_1 | five_prime_UTR | 79063869 | 79064231 | 79063869 | ID=Msa0046730-mRNA-1:five_prime_utr;Parent=Msa0046730-mRNA-1 |
| chr1_1 | CDS | 79063765 | 79063868 | 79063765 | ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1 |
| chr1_1 | CDS | 79063525 | 79063607 | 79063525 | ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1 |
| chr1_1 | CDS | 79063205 | 79063397 | 79063205 | ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1 |
| chr1_1 | CDS | 79062677 | 79062815 | 79062677 | ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1 |
| chr1_1 | CDS | 79062364 | 79062529 | 79062364 | ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1 |
| chr1_1 | CDS | 79062091 | 79062269 | 79062091 | ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1 |
| chr1_1 | CDS | 79061821 | 79061994 | 79061821 | ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1 |
| chr1_1 | CDS | 79061631 | 79061726 | 79061631 | ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1 |
| chr1_1 | CDS | 79061384 | 79061521 | 79061384 | ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1 |
| chr1_1 | CDS | 79060964 | 79061289 | 79060964 | ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1 |
| chr1_1 | CDS | 79060593 | 79060860 | 79060593 | ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1 |
| chr1_1 | CDS | 79060174 | 79060494 | 79060174 | ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1 |
| chr1_1 | three_prime_UTR | 79059847 | 79060173 | 79059847 | ID=Msa0046730-mRNA-1:three_prime_utr;Parent=Msa0046730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
