AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0046730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046730 MtrunA17_Chr7g0270341 99.176 728 2 1 1 728 1 724 0.0 1481
Msa0046730 MtrunA17_Chr3g0117521 73.938 706 163 8 1 702 1 689 0.0 1008
Msa0046730 MtrunA17_Chr2g0293661 74.169 662 164 3 1 662 1 655 0.0 1000
Msa0046730 MtrunA17_Chr3g0138161 57.703 688 255 8 7 683 4 666 0.0 782
Msa0046730 MtrunA17_Chr2g0332471 58.912 662 249 8 1 654 5 651 0.0 775
Msa0046730 MtrunA17_Chr2g0332351 58.735 664 251 8 1 656 5 653 0.0 773
Msa0046730 MtrunA17_Chr2g0332331 58.584 664 252 8 1 656 5 653 0.0 773
Msa0046730 MtrunA17_Chr1g0148971 55.606 660 263 6 7 654 20 661 0.0 741
Msa0046730 MtrunA17_Chr2g0332441 59.833 600 221 6 42 635 2 587 0.0 724
Msa0046730 MtrunA17_Chr2g0332491 53.869 659 202 6 1 654 5 566 0.0 678
Msa0046730 MtrunA17_Chr2g0332391 56.077 362 142 5 175 533 1 348 7.75e-137 406
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046730 AT3G62270.1 81.935 703 111 6 1 701 1 689 0.0 1165
Msa0046730 AT2G47160.1 80.000 725 123 8 1 724 1 704 0.0 1150
Msa0046730 AT2G47160.2 77.333 750 123 9 1 724 1 729 0.0 1137
Msa0046730 AT3G06450.3 71.933 652 171 5 3 653 5 645 0.0 977
Msa0046730 AT3G06450.1 71.933 652 171 5 3 653 5 645 0.0 977
Msa0046730 AT3G06450.2 71.933 652 171 5 3 653 5 645 0.0 977
Msa0046730 AT3G06450.4 71.933 652 171 5 3 653 5 645 0.0 977
Msa0046730 AT1G15460.2 59.520 667 254 7 8 667 13 670 0.0 818
Msa0046730 AT1G15460.1 59.520 667 254 7 8 667 13 670 0.0 818
Msa0046730 AT1G15460.3 61.990 613 224 4 8 619 13 617 0.0 801
Msa0046730 AT1G74810.7 56.949 662 269 5 1 654 1 654 0.0 786
Msa0046730 AT1G74810.4 56.949 662 269 5 1 654 1 654 0.0 786
Msa0046730 AT1G74810.1 56.949 662 269 5 1 654 1 654 0.0 786
Msa0046730 AT5G25430.1 56.018 673 269 10 7 668 9 665 0.0 762
Msa0046730 AT1G74810.6 57.624 623 253 4 35 654 8 622 0.0 748
Msa0046730 AT1G74810.3 57.624 623 253 4 35 654 8 622 0.0 748
Msa0046730 AT4G32510.1 53.744 681 279 7 1 662 1 664 0.0 741
Msa0046730 AT4G32510.2 53.324 692 286 8 1 672 1 675 0.0 740
Msa0046730 AT1G15460.4 57.417 573 228 7 102 667 1 564 0.0 668
Msa0046730 AT1G74810.5 55.576 556 236 4 102 654 1 548 0.0 643
Msa0046730 AT1G74810.2 54.913 519 223 4 139 654 1 511 0.0 584

Find 196 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCTTCATTTCCAGTTTA+TGG 0.059987 1_1:-79060110 Msa0046730:three_prime_UTR
TTGGGGCTACTTTGCCTTTA+TGG 0.123064 1_1:-79061040 Msa0046730:CDS
TCATTATGATTTGCTCCTTT+TGG 0.138425 1_1:-79061829 Msa0046730:CDS
TGTCTTTCCTTAACCTTCTT+TGG 0.168286 1_1:-79063890 Msa0046730:five_prime_UTR
ACATTATTGTGTGGCCTTAT+TGG 0.170662 1_1:-79061704 Msa0046730:CDS
TGATTCACTTTACAGGATTT+TGG 0.172961 1_1:-79063600 Msa0046730:intron
GTTCCTGTTGTGTTCATAAT+TGG 0.189623 1_1:-79061960 Msa0046730:CDS
AATAATGCTATTGTCTTAAA+AGG 0.213365 1_1:+79060798 None:intergenic
TTGTCTTGGTGTTTGGAATC+AGG 0.217098 1_1:+79060181 None:intergenic
ATTTATCTATTTATATGTTT+TGG 0.242133 1_1:-79060759 Msa0046730:CDS
GCAAGCACATTGTTGTTATT+AGG 0.266639 1_1:-79064156 Msa0046730:five_prime_UTR
TGCTTTGATACTATTCTTAC+TGG 0.270594 1_1:-79062778 Msa0046730:CDS
ACCTGACAATCTCATTTCTT+TGG 0.287431 1_1:+79060225 None:intergenic
CTATTCTTACTGGCCATCTT+AGG 0.291093 1_1:-79062768 Msa0046730:CDS
CTTTCCCAAAACTGGTTTCC+AGG 0.295534 1_1:+79061003 None:intergenic
TAAACTTTCAATTGCCATAA+AGG 0.296865 1_1:+79061026 None:intergenic
AATACCAACTTCAGTACTTT+GGG 0.301075 1_1:-79061058 Msa0046730:CDS
TTATTTCTTGTCTTGGTGTT+TGG 0.301293 1_1:+79060174 None:intergenic
GCGCCGGGCGACCACGGATT+TGG 0.306746 1_1:+79062128 None:intergenic
AAAGGATCCTTTCCCAAAAC+TGG 0.307317 1_1:+79060995 None:intergenic
CATTCAAGCAGCTACGAGTA+TGG 0.307917 1_1:-79061235 Msa0046730:CDS
AATCTCATTTCTTTGGTCAT+TGG 0.313846 1_1:+79060232 None:intergenic
TTCGCTTTGGTCCTTTCATT+TGG 0.315725 1_1:-79062420 Msa0046730:CDS
GTTTACCTGGAAACCAGTTT+TGG 0.316421 1_1:-79061008 Msa0046730:CDS
GGAGTGGAGCTATTGATCTT+TGG 0.338665 1_1:+79060370 None:intergenic
GCAATACCTGTCATTTCATT+TGG 0.339007 1_1:-79063548 Msa0046730:CDS
GATTTCGTATCTTCTCTCTT+TGG 0.340460 1_1:+79062483 None:intergenic
CGACTATGGTGTGCCACTTA+TGG 0.341912 1_1:-79062225 Msa0046730:CDS
CTTCGTGGAGGTTTGCTAAT+GGG 0.346782 1_1:-79062446 Msa0046730:CDS
AAAACATATAAATAGATAAA+TGG 0.347506 1_1:+79060761 None:intergenic
CGTTGTTCCTTTACCTCAAC+AGG 0.355491 1_1:+79061147 None:intergenic
GATTAACAGCAATCTGAGTT+TGG 0.355558 1_1:-79060481 Msa0046730:intron
CAAGAAGCCGTGGTGAATTT+AGG 0.358792 1_1:-79060408 Msa0046730:CDS
CCTTCGTGGAGGTTTGCTAA+TGG 0.359784 1_1:-79062447 Msa0046730:CDS
AACCGCTTTACCCGAATTGC+GGG 0.360056 1_1:-79062729 Msa0046730:CDS
TTGGGTAGAAACCTGTTTCT+TGG 0.364718 1_1:-79063217 Msa0046730:CDS
TCTTAAATTATTTCTTGTCT+TGG 0.364780 1_1:+79060167 None:intergenic
TGCCACTTATGGTCCTAGTT+TGG 0.369045 1_1:-79062214 Msa0046730:CDS
TGCGGTATGACTCCGTTTGC+AGG 0.370416 1_1:+79061674 None:intergenic
CAAACAACTCTCCCGCAATT+CGG 0.374938 1_1:+79062718 None:intergenic
CGAATTGCGGGAGAGTTGTT+TGG 0.375063 1_1:-79062717 Msa0046730:CDS
TTCTTTGGTCATTGGACTGT+TGG 0.381083 1_1:+79060240 None:intergenic
GGGAGAAAGTATTGTCTTAG+TGG 0.386465 1_1:+79060678 None:intergenic
TTAGGATCATTTCTTGGTGT+TGG 0.387898 1_1:+79060349 None:intergenic
AAATACCAACTTCAGTACTT+TGG 0.388661 1_1:-79061059 Msa0046730:CDS
TGCTAATGGGATGTTCGCTT+TGG 0.391611 1_1:-79062433 Msa0046730:CDS
TTGCAGGAGGAATTCCAATA+AGG 0.392276 1_1:+79061690 None:intergenic
CGCCCGGCGCATATGACAAT+TGG 0.395913 1_1:-79062115 Msa0046730:CDS
TTTCCCACCAAAGAAGGTTA+AGG 0.399439 1_1:+79063883 None:intergenic
GCACACCATAGTCGGCTATA+AGG 0.404541 1_1:+79062234 None:intergenic
ATCAGTAAGAATGCTAGTTT+AGG 0.405750 1_1:-79061460 Msa0046730:CDS
CAGCTGCATCCAAGTCTTGA+AGG 0.411041 1_1:+79060634 None:intergenic
TGCTAAAGAAAGACCTGAGT+TGG 0.415592 1_1:-79063236 Msa0046730:CDS
TGACAATTGGACTGTTGTTA+AGG 0.417329 1_1:-79062102 Msa0046730:CDS
ATATAAATAGATAAATGGTT+TGG 0.420632 1_1:+79060766 None:intergenic
AACCTGTTTCTTGGATGGGC+TGG 0.422896 1_1:-79063208 Msa0046730:CDS
AGGCGCCTTGGGATACCGTT+TGG 0.423298 1_1:+79062158 None:intergenic
GCTAGTTTAGGACAGTTATA+CGG 0.423941 1_1:-79061448 Msa0046730:CDS
TGTCTTGGTGTTTGGAATCA+GGG 0.423999 1_1:+79060182 None:intergenic
CATACTCGTAGCTGCTTGAA+TGG 0.424821 1_1:+79061236 None:intergenic
AAAATTAAAGAACCATAAAC+TGG 0.426033 1_1:+79060098 None:intergenic
CTTTCCTTAACCTTCTTTGG+TGG 0.427045 1_1:-79063887 Msa0046730:five_prime_UTR
TTGGACTAAAGAGGCGCCTT+GGG 0.427252 1_1:+79062147 None:intergenic
GAGTTTATATAACAATTGTA+TGG 0.427377 1_1:-79059860 Msa0046730:three_prime_UTR
ACCAAAGAAATGAGATTGTC+AGG 0.428973 1_1:-79060226 Msa0046730:CDS
TACATACACCTGTTGTATAT+AGG 0.431011 1_1:+79060035 None:intergenic
ACACTTTGTTGTGATTTGTT+TGG 0.434386 1_1:-79063920 Msa0046730:five_prime_UTR
CTAACTTGGGTACCTATTGC+TGG 0.436565 1_1:-79060735 Msa0046730:CDS
AGCACTGCAATCATAGTTGC+TGG 0.439606 1_1:+79061927 None:intergenic
CTCATTATCCTATATACAAC+AGG 0.439784 1_1:-79060043 Msa0046730:three_prime_UTR
GGAAACATGACTCCAGCAAT+AGG 0.440092 1_1:+79060723 None:intergenic
TCGGTGCTGTGAAAAGTAAA+AGG 0.440388 1_1:+79060977 None:intergenic
AAACAACTCTCCCGCAATTC+GGG 0.442782 1_1:+79062719 None:intergenic
CTTGCTTCCTGTTGAGGTAA+AGG 0.444141 1_1:-79061154 Msa0046730:CDS
AGTCCTCGGTCTGGCGTAAG+AGG 0.444825 1_1:-79060265 Msa0046730:CDS
AGGTTGGCTTCAAAGACATA+TGG 0.445651 1_1:+79064068 None:intergenic
TAACTTGCTTCAATCAGTAT+TGG 0.448829 1_1:-79061118 Msa0046730:CDS
GTAGAAACCTGTTTCTTGGA+TGG 0.449097 1_1:-79063213 Msa0046730:CDS
GAACAACTAGAGAGAAATAC+TGG 0.450622 1_1:-79063524 Msa0046730:intron
ATCCAGCCCATCCAAGAAAC+AGG 0.452822 1_1:+79063206 None:intergenic
TAATGTGCTACAAGCAAGAT+TGG 0.456259 1_1:-79063791 Msa0046730:CDS
CTTCAATCAGTATTGGTTGG+AGG 0.463638 1_1:-79061111 Msa0046730:CDS
GGAGCTGGTGCTTCTCATAT+CGG 0.465563 1_1:-79060460 Msa0046730:CDS
AAGGCTAGATCATGGCGTTA+TGG 0.470484 1_1:-79062369 Msa0046730:CDS
ATGGCAATTGAAAGTTTACC+TGG 0.470571 1_1:-79061021 Msa0046730:CDS
TTTCCTTAACCTTCTTTGGT+GGG 0.471292 1_1:-79063886 Msa0046730:five_prime_UTR
GCTCCAATTATGAACACAAC+AGG 0.475392 1_1:+79061957 None:intergenic
ATCATTTCTTGGTGTTGGAG+TGG 0.476671 1_1:+79060354 None:intergenic
CTTGGATGCAGCTGAGTATG+AGG 0.477776 1_1:-79060625 Msa0046730:CDS
TTTGGACTAAAGAGGCGCCT+TGG 0.478346 1_1:+79062146 None:intergenic
TCTAGCAACTCTTAAACATC+AGG 0.479084 1_1:-79061630 Msa0046730:intron
GGCATTATACACTCAATCAT+TGG 0.482191 1_1:-79063328 Msa0046730:CDS
AGTCCAAATCCGTGGTCGCC+CGG 0.483928 1_1:-79062131 Msa0046730:CDS
ATTTACTTGTATCTTCTGCT+CGG 0.484482 1_1:+79060958 None:intergenic
TTGCTTCAATCAGTATTGGT+TGG 0.485493 1_1:-79061114 Msa0046730:CDS
CGTAGCCTTATAGCCGACTA+TGG 0.485953 1_1:-79062239 Msa0046730:CDS
TTTGTGTCTTAGAATGATGT+AGG 0.486124 1_1:-79060143 Msa0046730:three_prime_UTR
TAAGAGGTGTCTGCATTTGA+TGG 0.489462 1_1:+79061407 None:intergenic
TAGAAACCTGTTTCTTGGAT+GGG 0.489881 1_1:-79063212 Msa0046730:CDS
TCGGGTAAAGCGGTTGATGA+TGG 0.490490 1_1:+79062737 None:intergenic
AGATGACTTGCTTCCTGTTG+AGG 0.490643 1_1:-79061160 Msa0046730:CDS
GTCCTTGTGCCAGGGACTTG+TGG 0.493396 1_1:-79062520 Msa0046730:intron
ATTGGAATTCCTCCTGCAAA+CGG 0.495864 1_1:-79061686 Msa0046730:CDS
GTGGAATCAAAGCAGGTGTA+AGG 0.505469 1_1:-79063764 Msa0046730:intron
GCTAAAGAAAGACCTGAGTT+GGG 0.505588 1_1:-79063235 Msa0046730:CDS
AGATCATGGCGTTATGGTAG+TGG 0.507525 1_1:-79062363 Msa0046730:intron
CTTATGGTCCTAGTTTGGAC+AGG 0.509478 1_1:-79062209 Msa0046730:CDS
GAGAATTAAAAGAGAGGTGC+GGG 0.510378 1_1:+79060314 None:intergenic
AGAAATGAGATTGTCAGGTA+GGG 0.510643 1_1:-79060221 Msa0046730:CDS
AAGAGAGGTGCGGGCTCAGA+CGG 0.517099 1_1:+79060323 None:intergenic
CAGCAATCTGAGTTTGGAGC+TGG 0.517149 1_1:-79060475 Msa0046730:CDS
AAGAAATGAGATTGTCAGGT+AGG 0.518072 1_1:-79060222 Msa0046730:CDS
GATCGACTTACTCGAGCAGA+TGG 0.522727 1_1:+79061373 None:intergenic
AGGACACACCTGTCCAAACT+AGG 0.523221 1_1:+79062201 None:intergenic
TAGCCCCAAAGTACTGAAGT+TGG 0.525039 1_1:+79061054 None:intergenic
GATGGGTCCTGGTAAATAAG+AGG 0.526245 1_1:+79061391 None:intergenic
TTACTCGAGCAGATGGGTCC+TGG 0.527068 1_1:+79061380 None:intergenic
TATGGGAAACGTGGACGCCC+CGG 0.529193 1_1:-79061217 Msa0046730:CDS
TCAAATATAGTCTCATCGAC+CGG 0.529909 1_1:+79061198 None:intergenic
ACTGAGCAAAGTCCTCGGTC+TGG 0.531263 1_1:-79060274 Msa0046730:CDS
AGTCCAATTGTCATATGCGC+CGG 0.534376 1_1:+79062112 None:intergenic
ACATATTGAAGTTGATGCCA+AGG 0.539736 1_1:+79063351 None:intergenic
CAAATATAGTCTCATCGACC+GGG 0.540975 1_1:+79061199 None:intergenic
GCTAGACTCTTTGTATGCAT+CGG 0.543376 1_1:+79061647 None:intergenic
ATTCAAGCAGCTACGAGTAT+GGG 0.543742 1_1:-79061234 Msa0046730:CDS
GCCACTCCTAAAATCAGTAA+AGG 0.544686 1_1:+79063298 None:intergenic
GTCCAATTGTCATATGCGCC+GGG 0.545574 1_1:+79062113 None:intergenic
TTATTAGGAACCACTTGAGA+AGG 0.549474 1_1:-79064141 Msa0046730:five_prime_UTR
ATGTGATGATGAATTAATCA+AGG 0.549636 1_1:+79064021 None:intergenic
TGTTCACCAAATGAAATGAC+AGG 0.550764 1_1:+79063542 None:intergenic
TAACAGTTACAATTTGACAT+AGG 0.550891 1_1:+79059994 None:intergenic
AAATCATAATGATAAGAAGA+TGG 0.551493 1_1:+79061840 None:intergenic
GGTTGGCTTCAAAGACATAT+GGG 0.552167 1_1:+79064069 None:intergenic
TCATTCTTGATACCTTCAAA+AGG 0.552421 1_1:+79063828 None:intergenic
TCTAACAGCTGTTCAAACCT+TGG 0.553634 1_1:-79063368 Msa0046730:CDS
ATGCCAGCTGTATCAAAAGC+AGG 0.559487 1_1:+79064112 None:intergenic
GTCCAAACTAGGACCATAAG+TGG 0.562627 1_1:+79062212 None:intergenic
GCAAATAGCATGAATAGTGC+AGG 0.563740 1_1:+79064048 None:intergenic
TGCTACAAGCAAGATTGGAC+AGG 0.567931 1_1:-79063786 Msa0046730:CDS
GGTATCAAGAATGATCTAAG+AGG 0.570702 1_1:-79063819 Msa0046730:CDS
AGGTGCACACCTTCAAGACT+TGG 0.572324 1_1:-79060643 Msa0046730:CDS
TGGACAGGTGGAATCAAAGC+AGG 0.574832 1_1:-79063771 Msa0046730:CDS
GAAATGAGATTGTCAGGTAG+GGG 0.575756 1_1:-79060220 Msa0046730:CDS
GTGTCTTAGAATGATGTAGG+AGG 0.575829 1_1:-79060140 Msa0046730:three_prime_UTR
TAAGGAGAAGGCCAAATGAA+AGG 0.576331 1_1:+79062409 None:intergenic
CAATATATCTTACCGATGCA+AGG 0.577470 1_1:+79060580 None:intergenic
CAACCGCTTTACCCGAATTG+CGG 0.578492 1_1:-79062730 Msa0046730:CDS
GATGGAACATGCTCCTAAGA+TGG 0.580149 1_1:+79062755 None:intergenic
ACTAAGAGCATGATCATCAA+AGG 0.581858 1_1:+79060702 None:intergenic
TGTTTCTTGGATGGGCTGGA+TGG 0.584884 1_1:-79063204 Msa0046730:intron
AAAGCAGAAAGGCTAGATCA+TGG 0.585011 1_1:-79062377 Msa0046730:CDS
TTGGCATCAACTTCAATATG+TGG 0.585839 1_1:-79063349 Msa0046730:CDS
TGCTGGAAGACATTATTGTG+TGG 0.586710 1_1:-79061713 Msa0046730:intron
CATAAGTGGCACACCATAGT+CGG 0.587251 1_1:+79062226 None:intergenic
GCAGACACCTCTTATTTACC+AGG 0.589449 1_1:-79061398 Msa0046730:CDS
ACCACGGATTTGGACTAAAG+AGG 0.593964 1_1:+79062138 None:intergenic
TGTTTGGAATCAGGGTTGAG+AGG 0.594019 1_1:+79060190 None:intergenic
TTTACCGTTCAACCTTGCAT+CGG 0.594284 1_1:-79060592 Msa0046730:intron
TCATATGCGCCGGGCGACCA+CGG 0.597510 1_1:+79062122 None:intergenic
AACAGGTTTCTACCCAACTC+AGG 0.597836 1_1:+79063223 None:intergenic
CACAAACAAACTGAGGAAGT+AGG 0.599980 1_1:+79063990 None:intergenic
CTCCCGCAATTCGGGTAAAG+CGG 0.606782 1_1:+79062727 None:intergenic
CTTACCGATGCAAGGTTGAA+CGG 0.608240 1_1:+79060588 None:intergenic
TCGCGACTGAGCAAAGTCCT+CGG 0.608512 1_1:-79060279 Msa0046730:CDS
GGTGCTTCTCATATCGGAGA+AGG 0.609058 1_1:-79060454 Msa0046730:CDS
AGTATACTGTATAATGACAC+TGG 0.615417 1_1:+79064253 None:intergenic
CAGGTTGTGACCTTCTCAAG+TGG 0.616469 1_1:+79064131 None:intergenic
ATACCAACTTCAGTACTTTG+GGG 0.618229 1_1:-79061057 Msa0046730:CDS
CCGTTTGGAACACTTGCAGT+CGG 0.622641 1_1:+79062173 None:intergenic
TCAAGAATGATCTAAGAGGA+AGG 0.623945 1_1:-79063815 Msa0046730:CDS
CCGACTGCAAGTGTTCCAAA+CGG 0.624889 1_1:-79062173 Msa0046730:CDS
GTGTTCCAAACGGTATCCCA+AGG 0.628714 1_1:-79062163 Msa0046730:CDS
AATGTGTACATGATCACAGT+AGG 0.629188 1_1:+79063271 None:intergenic
CTTACTGATACTGTTTCGAG+CGG 0.639834 1_1:+79061474 None:intergenic
GAAGTTATCACAAGAAGCCG+TGG 0.642922 1_1:-79060418 Msa0046730:CDS
ATTATACACTCAATCATTGG+TGG 0.645714 1_1:-79063325 Msa0046730:CDS
CGAGAATTAAAAGAGAGGTG+CGG 0.646333 1_1:+79060313 None:intergenic
GTGACAAATGATTAGGCACA+AGG 0.648110 1_1:-79061282 Msa0046730:intron
TACAAGCAAGATTGGACAGG+TGG 0.649360 1_1:-79063783 Msa0046730:CDS
ATCGACTTACTCGAGCAGAT+GGG 0.649721 1_1:+79061374 None:intergenic
CTGTTTCAACAAAAGTAGCA+TGG 0.650562 1_1:+79060823 None:intergenic
GCCTCTTTAGTCCAAATCCG+TGG 0.651698 1_1:-79062139 Msa0046730:CDS
ATAGCATGAATAGTGCAGGT+TGG 0.657205 1_1:+79064052 None:intergenic
AACACTTGCAGTCGGCATGT+AGG 0.670569 1_1:+79062181 None:intergenic
TTTGTATGCATCGGAGACTG+CGG 0.679679 1_1:+79061656 None:intergenic
AAATATAGTCTCATCGACCG+GGG 0.685107 1_1:+79061200 None:intergenic
GGTATGACTCCGTTTGCAGG+AGG 0.685848 1_1:+79061677 None:intergenic
GTTTAATCACAAACAAACTG+AGG 0.691326 1_1:+79063983 None:intergenic
GTGCCTCTTACGCCAGACCG+AGG 0.694511 1_1:+79060262 None:intergenic
TAGTATGCCTAAATTCACCA+CGG 0.697327 1_1:+79060401 None:intergenic
CCACACGAGAATTAAAAGAG+AGG 0.699754 1_1:+79060308 None:intergenic
AGCTACGAGTATGGGAAACG+TGG 0.712689 1_1:-79061226 Msa0046730:CDS
TTATTACTTTGACCACAGTG+TGG 0.712922 1_1:-79061904 Msa0046730:CDS
CCATTAGCAAACCTCCACGA+AGG 0.724265 1_1:+79062447 None:intergenic
TGATGATGAATTAATCAAGG+AGG 0.778516 1_1:+79064024 None:intergenic
AAAGCTGAGATGCCACACTG+TGG 0.814882 1_1:+79061892 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
chr1_1 gene 79059847 79064303 79059847 ID=Msa0046730;Name=Msa0046730
chr1_1 mRNA 79059847 79064303 79059847 ID=Msa0046730-mRNA-1;Parent=Msa0046730;Name=Msa0046730-mRNA-1;_AED=0.08;_eAED=0.08;_QI=407|0.91|0.92|1|0.91|0.84|13|327|728
chr1_1 exon 79059847 79060494 79059847 ID=Msa0046730-mRNA-1:exon:27246;Parent=Msa0046730-mRNA-1
chr1_1 exon 79060593 79060860 79060593 ID=Msa0046730-mRNA-1:exon:27245;Parent=Msa0046730-mRNA-1
chr1_1 exon 79060964 79061289 79060964 ID=Msa0046730-mRNA-1:exon:27244;Parent=Msa0046730-mRNA-1
chr1_1 exon 79061384 79061521 79061384 ID=Msa0046730-mRNA-1:exon:27243;Parent=Msa0046730-mRNA-1
chr1_1 exon 79061631 79061726 79061631 ID=Msa0046730-mRNA-1:exon:27242;Parent=Msa0046730-mRNA-1
chr1_1 exon 79061821 79061994 79061821 ID=Msa0046730-mRNA-1:exon:27241;Parent=Msa0046730-mRNA-1
chr1_1 exon 79062091 79062269 79062091 ID=Msa0046730-mRNA-1:exon:27240;Parent=Msa0046730-mRNA-1
chr1_1 exon 79062364 79062529 79062364 ID=Msa0046730-mRNA-1:exon:27239;Parent=Msa0046730-mRNA-1
chr1_1 exon 79062677 79062815 79062677 ID=Msa0046730-mRNA-1:exon:27238;Parent=Msa0046730-mRNA-1
chr1_1 exon 79063205 79063397 79063205 ID=Msa0046730-mRNA-1:exon:27237;Parent=Msa0046730-mRNA-1
chr1_1 exon 79063525 79063607 79063525 ID=Msa0046730-mRNA-1:exon:27236;Parent=Msa0046730-mRNA-1
chr1_1 exon 79063765 79064231 79063765 ID=Msa0046730-mRNA-1:exon:27235;Parent=Msa0046730-mRNA-1
chr1_1 exon 79064260 79064303 79064260 ID=Msa0046730-mRNA-1:exon:27234;Parent=Msa0046730-mRNA-1
chr1_1 five_prime_UTR 79064260 79064303 79064260 ID=Msa0046730-mRNA-1:five_prime_utr;Parent=Msa0046730-mRNA-1
chr1_1 five_prime_UTR 79063869 79064231 79063869 ID=Msa0046730-mRNA-1:five_prime_utr;Parent=Msa0046730-mRNA-1
chr1_1 CDS 79063765 79063868 79063765 ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1
chr1_1 CDS 79063525 79063607 79063525 ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1
chr1_1 CDS 79063205 79063397 79063205 ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1
chr1_1 CDS 79062677 79062815 79062677 ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1
chr1_1 CDS 79062364 79062529 79062364 ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1
chr1_1 CDS 79062091 79062269 79062091 ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1
chr1_1 CDS 79061821 79061994 79061821 ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1
chr1_1 CDS 79061631 79061726 79061631 ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1
chr1_1 CDS 79061384 79061521 79061384 ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1
chr1_1 CDS 79060964 79061289 79060964 ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1
chr1_1 CDS 79060593 79060860 79060593 ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1
chr1_1 CDS 79060174 79060494 79060174 ID=Msa0046730-mRNA-1:cds;Parent=Msa0046730-mRNA-1
chr1_1 three_prime_UTR 79059847 79060173 79059847 ID=Msa0046730-mRNA-1:three_prime_utr;Parent=Msa0046730-mRNA-1
Gene Sequence

>Msa0046730

ATGGAAGAAACATTTGTACCTTTTGAAGGTATCAAGAATGATCTAAGAGGAAGGTTAATGTGCTACAAGCAAGATTGGACAGGTGGAATCAAAGCAGGTGTAAGGATTTTGGCCCCCACAACATACATATTTTTTGCTTCTGCAATACCTGTCATTTCATTTGGTGAACAACTAGAGAGAAATACTGAGGGTGTTCTAACAGCTGTTCAAACCTTGGCATCAACTTCAATATGTGGCATTATACACTCAATCATTGGTGGTCAACCTTTACTGATTTTAGGAGTGGCAGAACCTACTGTGATCATGTACACATTCATGTTCAATTTTGCTAAAGAAAGACCTGAGTTGGGTAGAAACCTGTTTCTTGGATGGGCTGGATGGGTATGTGTATGGACTGCTTTGATACTATTCTTACTGGCCATCTTAGGAGCATGTTCCATCATCAACCGCTTTACCCGAATTGCGGGAGAGTTGTTTGGCATGCTCATTGCAATGCTTTTCATGCAGCAAGCTATCAAAGGACTTGTGGATGAGTTTCGCATACCAAAGAGAGAAGATACGAAATCAATTGAGTTTTTACCTTCGTGGAGGTTTGCTAATGGGATGTTCGCTTTGGTCCTTTCATTTGGCCTTCTCCTTACTGCATTAAAAAGCAGAAAGGCTAGATCATGGCGTTATGGTAGTGGTTGGCTTCGTAGCCTTATAGCCGACTATGGTGTGCCACTTATGGTCCTAGTTTGGACAGGTGTGTCCTACATGCCGACTGCAAGTGTTCCAAACGGTATCCCAAGGCGCCTCTTTAGTCCAAATCCGTGGTCGCCCGGCGCATATGACAATTGGACTGTTGTTAAGGCATGTAAACAAGATATGGTTCAAGTTCCTGTTGTGTTCATAATTGGAGCATTTATACCAGCAACTATGATTGCAGTGCTTTATTACTTTGACCACAGTGTGGCATCTCAGCTTTCTCAGCAGAAAGAGTTCAATTTGAGAAAGCCATCTTCTTATCATTATGATTTGCTCCTTTTGGGATTTTTGACATTATTGTGTGGCCTTATTGGAATTCCTCCTGCAAACGGAGTCATACCGCAGTCTCCGATGCATACAAAGAGTCTAGCAACTCTTAAACATCAGTTGCTTCGTAACAGACTCGTGATAACCGCTCGAAACAGTATCAGTAAGAATGCTAGTTTAGGACAGTTATACGGTAATATGCAAGAAGTATACCATCAAATGCAGACACCTCTTATTTACCAGGACCCATCTGCTCGAGCACAAGGACTAAAAGAATTAAAAGAAACAACCATTCAAGCAGCTACGAGTATGGGAAACGTGGACGCCCCGGTCGATGAGACTATATTTGACGTCGAGAAAGAAATAGATGACTTGCTTCCTGTTGAGGTAAAGGAACAACGTGTCAGTAACTTGCTTCAATCAGTATTGGTTGGAGGATGTGTTGCAGCCATGCCTATTCTCAAGAAAATACCAACTTCAGTACTTTGGGGCTACTTTGCCTTTATGGCAATTGAAAGTTTACCTGGAAACCAGTTTTGGGAAAGGATCCTTTTACTTTTCACAGCACCGAGCAGAAGATACAAGGTGCTTGAAGATTACCATGCTACTTTTGTTGAAACAGTTCCTTTTAAGACAATAGCATTATTCACAATTTTCCAAACCATTTATCTATTTATATGTTTTGGACTAACTTGGGTACCTATTGCTGGAGTCATGTTTCCTTTGATGATCATGCTCTTAGTTCCACTAAGACAATACTTTCTCCCCAAATTTTTCAAAGGTGCACACCTTCAAGACTTGGATGCAGCTGAGTATGAGGAGCAAACTGCTTTACCGTTCAACCTTGCATCGCAATCTGAGTTTGGAGCTGGTGCTTCTCATATCGGAGAAGGTGAGATATTTGATGAAGTTATCACAAGAAGCCGTGGTGAATTTAGGCATACTACTAACAGTCCAAAGATCAATAGCTCCACTCCAACACCAAGAAATGATCCTAAAAGCCGTCTGAGCCCGCACCTCTCTTTTAATTCTCGTGTGGGCGAGTTCGCGACTGAGCAAAGTCCTCGGTCTGGCGTAAGAGGCACCAACAGTCCAATGACCAAAGAAATGAGATTGTCAGGTAGGGGAATAAGTCCTCTCAACCCTGATTCCAAACACCAAGACAAGAAATAA

Protein sequence

>Msa0046730

MEETFVPFEGIKNDLRGRLMCYKQDWTGGIKAGVRILAPTTYIFFASAIPVISFGEQLERNTEGVLTAVQTLASTSICGIIHSIIGGQPLLILGVAEPTVIMYTFMFNFAKERPELGRNLFLGWAGWVCVWTALILFLLAILGACSIINRFTRIAGELFGMLIAMLFMQQAIKGLVDEFRIPKREDTKSIEFLPSWRFANGMFALVLSFGLLLTALKSRKARSWRYGSGWLRSLIADYGVPLMVLVWTGVSYMPTASVPNGIPRRLFSPNPWSPGAYDNWTVVKACKQDMVQVPVVFIIGAFIPATMIAVLYYFDHSVASQLSQQKEFNLRKPSSYHYDLLLLGFLTLLCGLIGIPPANGVIPQSPMHTKSLATLKHQLLRNRLVITARNSISKNASLGQLYGNMQEVYHQMQTPLIYQDPSARAQGLKELKETTIQAATSMGNVDAPVDETIFDVEKEIDDLLPVEVKEQRVSNLLQSVLVGGCVAAMPILKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEDYHATFVETVPFKTIALFTIFQTIYLFICFGLTWVPIAGVMFPLMIMLLVPLRQYFLPKFFKGAHLQDLDAAEYEEQTALPFNLASQSEFGAGASHIGEGEIFDEVITRSRGEFRHTTNSPKINSSTPTPRNDPKSRLSPHLSFNSRVGEFATEQSPRSGVRGTNSPMTKEMRLSGRGISPLNPDSKHQDKK*