Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143450 | sp|Q9M1P7|BOR2_ARATH | 81.935 | 703 | 111 | 6 | 1 | 701 | 1 | 689 | 0.0 | 1164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143450 | G7KTQ1 | 99.038 | 728 | 3 | 1 | 1 | 728 | 1 | 724 | 0.0 | 1479 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046730 | Msa0143450 | 0.936979 | 7.280563e-98 | -8.615850e-47 |
| Msa0143450 | Msa0343530 | 0.816954 | 4.236143e-52 | -8.615850e-47 |
| Msa0143450 | Msa1082720 | 0.975148 | 2.001355e-139 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143450 | MtrunA17_Chr7g0270341 | 99.038 | 728 | 3 | 1 | 1 | 728 | 1 | 724 | 0.0 | 1479 |
| Msa0143450 | MtrunA17_Chr3g0117521 | 73.938 | 706 | 163 | 8 | 1 | 702 | 1 | 689 | 0.0 | 1007 |
| Msa0143450 | MtrunA17_Chr2g0293661 | 74.169 | 662 | 164 | 3 | 1 | 662 | 1 | 655 | 0.0 | 1000 |
| Msa0143450 | MtrunA17_Chr3g0138161 | 57.703 | 688 | 255 | 8 | 7 | 683 | 4 | 666 | 0.0 | 782 |
| Msa0143450 | MtrunA17_Chr2g0332471 | 58.912 | 662 | 249 | 8 | 1 | 654 | 5 | 651 | 0.0 | 775 |
| Msa0143450 | MtrunA17_Chr2g0332331 | 58.584 | 664 | 252 | 8 | 1 | 656 | 5 | 653 | 0.0 | 773 |
| Msa0143450 | MtrunA17_Chr2g0332351 | 58.735 | 664 | 251 | 8 | 1 | 656 | 5 | 653 | 0.0 | 773 |
| Msa0143450 | MtrunA17_Chr1g0148971 | 55.606 | 660 | 263 | 6 | 7 | 654 | 20 | 661 | 0.0 | 741 |
| Msa0143450 | MtrunA17_Chr2g0332441 | 59.833 | 600 | 221 | 6 | 42 | 635 | 2 | 587 | 0.0 | 724 |
| Msa0143450 | MtrunA17_Chr2g0332491 | 53.869 | 659 | 202 | 6 | 1 | 654 | 5 | 566 | 0.0 | 677 |
| Msa0143450 | MtrunA17_Chr2g0332391 | 56.077 | 362 | 142 | 5 | 175 | 533 | 1 | 348 | 8.63e-137 | 406 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143450 | AT3G62270.1 | 81.935 | 703 | 111 | 6 | 1 | 701 | 1 | 689 | 0.0 | 1164 |
| Msa0143450 | AT2G47160.1 | 80.417 | 720 | 119 | 8 | 1 | 719 | 1 | 699 | 0.0 | 1148 |
| Msa0143450 | AT2G47160.2 | 77.718 | 745 | 119 | 9 | 1 | 719 | 1 | 724 | 0.0 | 1135 |
| Msa0143450 | AT3G06450.3 | 71.933 | 652 | 171 | 5 | 3 | 653 | 5 | 645 | 0.0 | 976 |
| Msa0143450 | AT3G06450.1 | 71.933 | 652 | 171 | 5 | 3 | 653 | 5 | 645 | 0.0 | 976 |
| Msa0143450 | AT3G06450.2 | 71.933 | 652 | 171 | 5 | 3 | 653 | 5 | 645 | 0.0 | 976 |
| Msa0143450 | AT3G06450.4 | 71.933 | 652 | 171 | 5 | 3 | 653 | 5 | 645 | 0.0 | 976 |
| Msa0143450 | AT1G15460.2 | 59.520 | 667 | 254 | 7 | 8 | 667 | 13 | 670 | 0.0 | 818 |
| Msa0143450 | AT1G15460.1 | 59.520 | 667 | 254 | 7 | 8 | 667 | 13 | 670 | 0.0 | 818 |
| Msa0143450 | AT1G15460.3 | 61.990 | 613 | 224 | 4 | 8 | 619 | 13 | 617 | 0.0 | 800 |
| Msa0143450 | AT1G74810.7 | 56.949 | 662 | 269 | 5 | 1 | 654 | 1 | 654 | 0.0 | 786 |
| Msa0143450 | AT1G74810.4 | 56.949 | 662 | 269 | 5 | 1 | 654 | 1 | 654 | 0.0 | 786 |
| Msa0143450 | AT1G74810.1 | 56.949 | 662 | 269 | 5 | 1 | 654 | 1 | 654 | 0.0 | 786 |
| Msa0143450 | AT5G25430.1 | 56.018 | 673 | 269 | 10 | 7 | 668 | 9 | 665 | 0.0 | 761 |
| Msa0143450 | AT1G74810.6 | 57.624 | 623 | 253 | 4 | 35 | 654 | 8 | 622 | 0.0 | 748 |
| Msa0143450 | AT1G74810.3 | 57.624 | 623 | 253 | 4 | 35 | 654 | 8 | 622 | 0.0 | 748 |
| Msa0143450 | AT4G32510.1 | 53.744 | 681 | 279 | 7 | 1 | 662 | 1 | 664 | 0.0 | 741 |
| Msa0143450 | AT4G32510.2 | 53.324 | 692 | 286 | 8 | 1 | 672 | 1 | 675 | 0.0 | 740 |
| Msa0143450 | AT1G15460.4 | 57.417 | 573 | 228 | 7 | 102 | 667 | 1 | 564 | 0.0 | 668 |
| Msa0143450 | AT1G74810.5 | 55.576 | 556 | 236 | 4 | 102 | 654 | 1 | 548 | 0.0 | 642 |
| Msa0143450 | AT1G74810.2 | 54.913 | 519 | 223 | 4 | 139 | 654 | 1 | 511 | 0.0 | 584 |
Find 201 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCTTCATTTCCAGTTTA+TGG | 0.059987 | 1_4:+2391470 | Msa0143450:three_prime_UTR |
| TTGGGGCTACTTTGCCTTTA+TGG | 0.123064 | 1_4:+2390540 | Msa0143450:CDS |
| TGTCTTTCCTTAACCTTCTT+TGG | 0.168286 | 1_4:+2387248 | Msa0143450:five_prime_UTR |
| TCATTATGATTTGCTACTTT+TGG | 0.168789 | 1_4:+2389776 | Msa0143450:CDS |
| ACATTATTGTGTGGCCTTAT+TGG | 0.170662 | 1_4:+2389901 | Msa0143450:CDS |
| TGATTCACTTTACAGGATTT+TGG | 0.172961 | 1_4:+2387960 | Msa0143450:intron |
| GTTCCTGTTGTGTTCATAAT+TGG | 0.189623 | 1_4:+2389645 | Msa0143450:CDS |
| TTATTTCTTGTCTTGGTGTT+TGG | 0.236504 | 1_4:-2391407 | None:intergenic |
| ATTTATCTATTTATATGTTT+TGG | 0.242133 | 1_4:+2390822 | Msa0143450:CDS |
| TATTTCTTGTCTTGGTGTTT+GGG | 0.250913 | 1_4:-2391406 | None:intergenic |
| GCAAGCACATTGTTGTTATT+AGG | 0.266639 | 1_4:+2386984 | Msa0143450:five_prime_UTR |
| TGCTTTGATACTATTCTTAC+TGG | 0.270594 | 1_4:+2388784 | Msa0143450:CDS |
| ACCTGACAATCTCATTTCTT+TGG | 0.287431 | 1_4:-2391356 | None:intergenic |
| CTATTCTTACTGGCCATCTT+AGG | 0.291093 | 1_4:+2388794 | Msa0143450:CDS |
| CTTTCCCAAAACTGGTTTCC+AGG | 0.295534 | 1_4:-2390577 | None:intergenic |
| TTGTCTTGGTGTTTGGGATC+AGG | 0.296206 | 1_4:-2391400 | None:intergenic |
| TAAACTTTCAATTGCCATAA+AGG | 0.296865 | 1_4:-2390554 | None:intergenic |
| AATACCAACTTCAGTACTTT+GGG | 0.301075 | 1_4:+2390522 | Msa0143450:CDS |
| CATTCAAGCAGCTACAAGTA+TGG | 0.304452 | 1_4:+2390345 | Msa0143450:CDS |
| AAAGGATCCTTTCCCAAAAC+TGG | 0.307317 | 1_4:-2390585 | None:intergenic |
| AATCTCATTTCTTTGGTCAT+TGG | 0.313846 | 1_4:-2391349 | None:intergenic |
| TTCGCTTTGGTCCTTTCATT+TGG | 0.315725 | 1_4:+2389142 | Msa0143450:CDS |
| GTTTACCTGGAAACCAGTTT+TGG | 0.316421 | 1_4:+2390572 | Msa0143450:CDS |
| CGACTATGGTGTGCCGCTTA+TGG | 0.321717 | 1_4:+2389380 | Msa0143450:CDS |
| GCGCCGGGCGACCACGGATT+TGG | 0.326784 | 1_4:-2389477 | None:intergenic |
| GTCTTAATTATTTCTTGTCT+TGG | 0.335456 | 1_4:-2391414 | None:intergenic |
| GGAGTGGAGCTATTGATCTT+TGG | 0.338665 | 1_4:-2391211 | None:intergenic |
| GCAATACCTGTCATTTCATT+TGG | 0.339007 | 1_4:+2388012 | Msa0143450:CDS |
| GATTTCGTATCTTCTCTCTT+TGG | 0.340460 | 1_4:-2389079 | None:intergenic |
| CTTCGTGGAGGTTTGCTAAT+GGG | 0.346782 | 1_4:+2389116 | Msa0143450:CDS |
| AAAACATATAAATAGATAAA+TGG | 0.347506 | 1_4:-2390820 | None:intergenic |
| CGTTGTTCCTTTACCTCAAC+AGG | 0.355491 | 1_4:-2390433 | None:intergenic |
| GATTAACAGCAATCTGAGTT+TGG | 0.355558 | 1_4:+2391100 | Msa0143450:intron |
| CAAGAAGCCGTGGTGAATTT+AGG | 0.358792 | 1_4:+2391173 | Msa0143450:CDS |
| CCTTCGTGGAGGTTTGCTAA+TGG | 0.359784 | 1_4:+2389115 | Msa0143450:CDS |
| AACCGCTTTACCCGAATTGC+GGG | 0.360056 | 1_4:+2388833 | Msa0143450:CDS |
| GCTAGTTTAGGACAGTTATA+TGG | 0.368479 | 1_4:+2390132 | Msa0143450:CDS |
| TTGGGTAGGAACCTGTTTCT+TGG | 0.368684 | 1_4:+2388343 | Msa0143450:CDS |
| TGCGGTATGACTCCGTTTGC+AGG | 0.370416 | 1_4:-2389931 | None:intergenic |
| CGCCCGGCGCCTATGACAAT+TGG | 0.370935 | 1_4:+2389490 | Msa0143450:CDS |
| CAAACAACTCTCCCGCAATT+CGG | 0.374938 | 1_4:-2388844 | None:intergenic |
| CGAATTGCGGGAGAGTTGTT+TGG | 0.375063 | 1_4:+2388845 | Msa0143450:CDS |
| TTCTTTGGTCATTGGACTGT+TGG | 0.381083 | 1_4:-2391341 | None:intergenic |
| GGGAGAAAGTATTGTCTTAG+TGG | 0.386465 | 1_4:-2390903 | None:intergenic |
| TTAGGATCATTTCTTGGTGT+TGG | 0.387898 | 1_4:-2391232 | None:intergenic |
| AAATACCAACTTCAGTACTT+TGG | 0.388661 | 1_4:+2390521 | Msa0143450:CDS |
| TGCTAATGGGATGTTCGCTT+TGG | 0.391611 | 1_4:+2389129 | Msa0143450:CDS |
| TTGCAGGAGGAATTCCAATA+AGG | 0.392276 | 1_4:-2389915 | None:intergenic |
| TGCCGCTTATGGTCCTAGTT+TGG | 0.397731 | 1_4:+2389391 | Msa0143450:CDS |
| AGGCGCCTTGGGATACCATT+TGG | 0.398546 | 1_4:-2389447 | None:intergenic |
| TTCATTATCCTATATACAAC+AGG | 0.398618 | 1_4:+2391537 | Msa0143450:three_prime_UTR |
| TTTCCCACCAAAGAAGGTTA+AGG | 0.399439 | 1_4:-2387255 | None:intergenic |
| ATTGATCTTTGGACTGTTAG+TGG | 0.403340 | 1_4:-2391200 | None:intergenic |
| AACCTGTTTCTTGGATGGGC+TGG | 0.403846 | 1_4:+2388352 | Msa0143450:CDS |
| ATCAGTAAGAATGCTAGTTT+AGG | 0.405750 | 1_4:+2390120 | Msa0143450:CDS |
| CATACTTGTAGCTGCTTGAA+TGG | 0.407531 | 1_4:-2390344 | None:intergenic |
| CAGCTGCATCCAAGTCTTGA+AGG | 0.411041 | 1_4:-2390947 | None:intergenic |
| TGCTAAAGAAAGACCTGAGT+TGG | 0.415592 | 1_4:+2388324 | Msa0143450:CDS |
| TGACAATTGGACTGTTGTTA+AGG | 0.418583 | 1_4:+2389503 | Msa0143450:CDS |
| ATATAAATAGATAAATGGTT+TGG | 0.420632 | 1_4:-2390815 | None:intergenic |
| GTAGGAACCTGTTTCTTGGA+TGG | 0.424396 | 1_4:+2388347 | Msa0143450:CDS |
| GCACACCATAGTCGGCTATA+AGG | 0.425913 | 1_4:-2389371 | None:intergenic |
| AAAATTAAAGAACCATAAAC+TGG | 0.426033 | 1_4:-2391482 | None:intergenic |
| CTTTCCTTAACCTTCTTTGG+TGG | 0.427045 | 1_4:+2387251 | Msa0143450:five_prime_UTR |
| TGTCTTGGTGTTTGGGATCA+GGG | 0.427048 | 1_4:-2391399 | None:intergenic |
| TTGGACTAAAGAGGCGCCTT+GGG | 0.427252 | 1_4:-2389458 | None:intergenic |
| GAATTTATATAACAATTGTA+TGG | 0.427377 | 1_4:+2391720 | Msa0143450:three_prime_UTR |
| ACCAAAGAAATGAGATTGTC+AGG | 0.428973 | 1_4:+2391355 | Msa0143450:CDS |
| TACATACACCTGTTGTATAT+AGG | 0.431011 | 1_4:-2391545 | None:intergenic |
| ACACTTTGTTGTGATTTGTT+TGG | 0.434386 | 1_4:+2387218 | Msa0143450:five_prime_UTR |
| CTAACTTGGGTACCTATTGC+TGG | 0.436565 | 1_4:+2390846 | Msa0143450:CDS |
| AGCACTGCAATCATAGTTGC+TGG | 0.439606 | 1_4:-2389678 | None:intergenic |
| GGAAACATGACTCCAGCAAT+AGG | 0.440092 | 1_4:-2390858 | None:intergenic |
| TCGGTGCTGTGAAAAGTAAA+AGG | 0.440388 | 1_4:-2390603 | None:intergenic |
| AAACAACTCTCCCGCAATTC+GGG | 0.442782 | 1_4:-2388843 | None:intergenic |
| CTTGCTTCCTGTTGAGGTAA+AGG | 0.444141 | 1_4:+2390426 | Msa0143450:CDS |
| AGTCCTCGGTCTGGCGTAAG+AGG | 0.444825 | 1_4:+2391316 | Msa0143450:CDS |
| TAACTTGCTTCAATCAGTAT+TGG | 0.448829 | 1_4:+2390462 | Msa0143450:CDS |
| GAACAACTAGAGAGAAATAC+TGG | 0.450622 | 1_4:+2388036 | Msa0143450:CDS |
| ATCCAGCCCATCCAAGAAAC+AGG | 0.452822 | 1_4:-2388354 | None:intergenic |
| TAATGTGCTACAAGCAAGAT+TGG | 0.456259 | 1_4:+2387347 | Msa0143450:CDS |
| TAGGAACCTGTTTCTTGGAT+GGG | 0.458223 | 1_4:+2388348 | Msa0143450:CDS |
| CTTCAATCAGTATTGGTTGG+AGG | 0.463638 | 1_4:+2390469 | Msa0143450:CDS |
| GGAGCTGGTGCTTCTCATAT+CGG | 0.465563 | 1_4:+2391121 | Msa0143450:CDS |
| AAGGCTAGATCATGGCGTTA+TGG | 0.470484 | 1_4:+2389193 | Msa0143450:CDS |
| ATGGCAATTGAAAGTTTACC+TGG | 0.470571 | 1_4:+2390559 | Msa0143450:CDS |
| TTTCCTTAACCTTCTTTGGT+GGG | 0.471292 | 1_4:+2387252 | Msa0143450:five_prime_UTR |
| CGCAGCCTTATAGCCGACTA+TGG | 0.473989 | 1_4:+2389366 | Msa0143450:CDS |
| GCTCCAATTATGAACACAAC+AGG | 0.475392 | 1_4:-2389648 | None:intergenic |
| ATCATTTCTTGGTGTTGGAG+TGG | 0.476671 | 1_4:-2391227 | None:intergenic |
| CTTGGATGCAGCTGAGTATG+AGG | 0.477776 | 1_4:+2390956 | Msa0143450:CDS |
| TTTGGACTAAAGAGGCGCCT+TGG | 0.478346 | 1_4:-2389459 | None:intergenic |
| TCTAGCAACTCTTAAACATC+AGG | 0.479084 | 1_4:+2389975 | Msa0143450:CDS |
| GGCATTATACACTCAATCAT+TGG | 0.482191 | 1_4:+2388232 | Msa0143450:CDS |
| AGTCCAAATCCGTGGTCGCC+CGG | 0.483928 | 1_4:+2389474 | Msa0143450:CDS |
| ATTTACTTGTATCTTCTGCT+CGG | 0.484482 | 1_4:-2390622 | None:intergenic |
| TTGCTTCAATCAGTATTGGT+TGG | 0.485493 | 1_4:+2390466 | Msa0143450:CDS |
| TTTGTGTCTTAGAATGATGT+AGG | 0.486124 | 1_4:+2391437 | Msa0143450:three_prime_UTR |
| TAAGAGGTGTCTGCATTTGA+TGG | 0.489462 | 1_4:-2390173 | None:intergenic |
| TCGGGTAAAGCGGTTGATGA+TGG | 0.490490 | 1_4:-2388825 | None:intergenic |
| AGATGACTTGCTTCCTGTTG+AGG | 0.490643 | 1_4:+2390420 | Msa0143450:CDS |
| ATTCTTCAATCCTACTTCCT+CGG | 0.492491 | 1_4:+2387138 | Msa0143450:five_prime_UTR |
| GTCCTTGTGCCAGGGACTTG+TGG | 0.493396 | 1_4:+2389042 | Msa0143450:intron |
| ATTGGAATTCCTCCTGCAAA+CGG | 0.495864 | 1_4:+2389919 | Msa0143450:CDS |
| GTGGAATCAAAGCAGGTGTA+AGG | 0.505469 | 1_4:+2387374 | Msa0143450:CDS |
| GCTAAAGAAAGACCTGAGTT+GGG | 0.505588 | 1_4:+2388325 | Msa0143450:CDS |
| AGATCATGGCGTTATGGTAG+TGG | 0.507525 | 1_4:+2389199 | Msa0143450:CDS |
| GAGAATTAAAAGAGAGGTGC+GGG | 0.510378 | 1_4:-2391267 | None:intergenic |
| AGAAATGAGATTGTCAGGTA+GGG | 0.510643 | 1_4:+2391360 | Msa0143450:CDS |
| AACAACAGTCCAATTGTCAT+AGG | 0.516200 | 1_4:-2389499 | None:intergenic |
| AAGAGAGGTGCGGGCTCAGA+CGG | 0.517099 | 1_4:-2391258 | None:intergenic |
| CAGCAATCTGAGTTTGGAGC+TGG | 0.517149 | 1_4:+2391106 | Msa0143450:intron |
| AAGAAATGAGATTGTCAGGT+AGG | 0.518072 | 1_4:+2391359 | Msa0143450:CDS |
| AGTCCAATTGTCATAGGCGC+CGG | 0.518211 | 1_4:-2389493 | None:intergenic |
| CTTATGGTCCTAGTTTGGAC+AGG | 0.522059 | 1_4:+2389396 | Msa0143450:CDS |
| GATCGACTTACTCGAGCAGA+TGG | 0.522727 | 1_4:-2390207 | None:intergenic |
| AGGACACACCTGTCCAAACT+AGG | 0.523221 | 1_4:-2389404 | None:intergenic |
| TAGCCCCAAAGTACTGAAGT+TGG | 0.525039 | 1_4:-2390526 | None:intergenic |
| GATGGGTCCTGGTAAATAAG+AGG | 0.526245 | 1_4:-2390189 | None:intergenic |
| TTACTCGAGCAGATGGGTCC+TGG | 0.527068 | 1_4:-2390200 | None:intergenic |
| TCAAATATAGTCTCATCGAC+CGG | 0.529909 | 1_4:-2390382 | None:intergenic |
| TATGGGAAACGTGGACGCCC+CGG | 0.531213 | 1_4:+2390363 | Msa0143450:CDS |
| ACTGAGCAAAGTCCTCGGTC+TGG | 0.531263 | 1_4:+2391307 | Msa0143450:CDS |
| GTCCAATTGTCATAGGCGCC+GGG | 0.533568 | 1_4:-2389492 | None:intergenic |
| ACATATTGAAGTTGATGCCA+AGG | 0.539736 | 1_4:-2388209 | None:intergenic |
| CAAATATAGTCTCATCGACC+GGG | 0.540975 | 1_4:-2390381 | None:intergenic |
| GCTAGACTCTTTGTATGCAT+CGG | 0.543376 | 1_4:-2389958 | None:intergenic |
| GCCACTCCTAAAATCAGTAA+AGG | 0.544686 | 1_4:-2388262 | None:intergenic |
| AATAATGCTATTGTCTTGAA+AGG | 0.546307 | 1_4:-2390783 | None:intergenic |
| TGTTTGGGATCAGGGTTGAG+AGG | 0.546974 | 1_4:-2391391 | None:intergenic |
| TCTGACAGCTGTTCAAACCT+TGG | 0.548609 | 1_4:+2388192 | Msa0143450:CDS |
| TTATTAGGAACCACTTGAGA+AGG | 0.549474 | 1_4:+2386999 | Msa0143450:five_prime_UTR |
| ATGTGATGATGAATTAATCA+AGG | 0.549636 | 1_4:-2387117 | None:intergenic |
| TGTTCACCAAATGAAATGAC+AGG | 0.550764 | 1_4:-2388018 | None:intergenic |
| TAACAGTTACAATTTGACAT+AGG | 0.550891 | 1_4:-2391586 | None:intergenic |
| AAATCATAATGATAAGAAGA+TGG | 0.551493 | 1_4:-2389765 | None:intergenic |
| TCATTCTTGATACCTTCAAA+AGG | 0.552421 | 1_4:-2387310 | None:intergenic |
| GCAGGTTGGCTTCAAAGACA+TGG | 0.559142 | 1_4:-2387072 | None:intergenic |
| ATGCCAGCTGTATCAAAAGC+AGG | 0.559487 | 1_4:-2387028 | None:intergenic |
| CCGACTGCAAGTGTTCCAAA+TGG | 0.560718 | 1_4:+2389432 | Msa0143450:CDS |
| GCAAATAGCATGAATAGTGC+AGG | 0.563740 | 1_4:-2387090 | None:intergenic |
| ATTCAAGCAGCTACAAGTAT+GGG | 0.564842 | 1_4:+2390346 | Msa0143450:CDS |
| AACAGGTTCCTACCCAACTC+AGG | 0.566862 | 1_4:-2388337 | None:intergenic |
| TGCTACAAGCAAGATTGGAC+AGG | 0.567931 | 1_4:+2387352 | Msa0143450:CDS |
| GTGTCTTAGAATGATGTAGG+AGG | 0.569957 | 1_4:+2391440 | Msa0143450:three_prime_UTR |
| GGTATCAAGAATGATCTAAG+AGG | 0.570702 | 1_4:+2387319 | Msa0143450:CDS |
| AGGTGCACACCTTCAAGACT+TGG | 0.572324 | 1_4:+2390938 | Msa0143450:CDS |
| TGGACAGGTGGAATCAAAGC+AGG | 0.574832 | 1_4:+2387367 | Msa0143450:CDS |
| GAAATGAGATTGTCAGGTAG+GGG | 0.575756 | 1_4:+2391361 | Msa0143450:CDS |
| TAAGAAGAAGGCCAAATGAA+AGG | 0.576331 | 1_4:-2389153 | None:intergenic |
| CAATATATCTTACCGATGCA+AGG | 0.577470 | 1_4:-2391001 | None:intergenic |
| CAACCGCTTTACCCGAATTG+CGG | 0.578492 | 1_4:+2388832 | Msa0143450:CDS |
| GATGGAACATGCTCCTAAGA+TGG | 0.580149 | 1_4:-2388807 | None:intergenic |
| ACTAAGAGCATGATCATCAA+AGG | 0.581858 | 1_4:-2390879 | None:intergenic |
| TGTTTCTTGGATGGGCTGGA+TGG | 0.584884 | 1_4:+2388356 | Msa0143450:CDS |
| AAAGCAGAAAGGCTAGATCA+TGG | 0.585011 | 1_4:+2389185 | Msa0143450:CDS |
| TTGGCATCAACTTCAATATG+TGG | 0.585839 | 1_4:+2388211 | Msa0143450:CDS |
| TGCTGGAAGACATTATTGTG+TGG | 0.586710 | 1_4:+2389892 | Msa0143450:intron |
| AAGAAAGACCTGAGTTGGGT+AGG | 0.589140 | 1_4:+2388329 | Msa0143450:CDS |
| GCAGACACCTCTTATTTACC+AGG | 0.589449 | 1_4:+2390182 | Msa0143450:CDS |
| ACCACGGATTTGGACTAAAG+AGG | 0.593964 | 1_4:-2389467 | None:intergenic |
| TTTACCGTTCAACCTTGCAT+CGG | 0.594284 | 1_4:+2390989 | Msa0143450:CDS |
| GTGTTCCAAATGGTATCCCA+AGG | 0.594369 | 1_4:+2389442 | Msa0143450:CDS |
| TCATAGGCGCCGGGCGACCA+CGG | 0.600175 | 1_4:-2389483 | None:intergenic |
| CTCCCGCAATTCGGGTAAAG+CGG | 0.606782 | 1_4:-2388835 | None:intergenic |
| CACAAAGAAACCGAGGAAGT+AGG | 0.608199 | 1_4:-2387148 | None:intergenic |
| CTTACCGATGCAAGGTTGAA+CGG | 0.608240 | 1_4:-2390993 | None:intergenic |
| TCGCGACTGAGCAAAGTCCT+CGG | 0.608512 | 1_4:+2391302 | Msa0143450:CDS |
| CATAAGCGGCACACCATAGT+CGG | 0.608622 | 1_4:-2389379 | None:intergenic |
| GGTGCTTCTCATATCGGAGA+AGG | 0.609058 | 1_4:+2391127 | Msa0143450:CDS |
| AGTATACTGTATAATGACAC+TGG | 0.615417 | 1_4:-2386887 | None:intergenic |
| CAGGTTGTGACCTTCTCAAG+TGG | 0.616469 | 1_4:-2387009 | None:intergenic |
| ATACCAACTTCAGTACTTTG+GGG | 0.618229 | 1_4:+2390523 | Msa0143450:CDS |
| CCATTTGGAACACTTGCAGT+CGG | 0.622641 | 1_4:-2389432 | None:intergenic |
| TCAAGAATGATCTAAGAGGA+AGG | 0.623945 | 1_4:+2387323 | Msa0143450:CDS |
| AATGTGTACATGATCACAGT+AGG | 0.629188 | 1_4:-2388289 | None:intergenic |
| CAGGTTGGCTTCAAAGACAT+GGG | 0.630155 | 1_4:-2387071 | None:intergenic |
| GTCCAAACTAGGACCATAAG+CGG | 0.639230 | 1_4:-2389393 | None:intergenic |
| CTTACTGATACTGTTTCGAG+CGG | 0.639834 | 1_4:-2390106 | None:intergenic |
| GAAGTCATCACAAGAAGCCG+TGG | 0.640480 | 1_4:+2391163 | Msa0143450:CDS |
| ATTATACACTCAATCATTGG+TGG | 0.645714 | 1_4:+2388235 | Msa0143450:CDS |
| CGAGAATTAAAAGAGAGGTG+CGG | 0.646333 | 1_4:-2391268 | None:intergenic |
| GTGACAAATGATTAGGCACA+AGG | 0.648110 | 1_4:+2390298 | Msa0143450:intron |
| TACAAGCAAGATTGGACAGG+TGG | 0.649360 | 1_4:+2387355 | Msa0143450:CDS |
| ATCGACTTACTCGAGCAGAT+GGG | 0.649721 | 1_4:-2390206 | None:intergenic |
| CTGTTTCAACAAAAGTAGCA+TGG | 0.650562 | 1_4:-2390758 | None:intergenic |
| GCCTCTTTAGTCCAAATCCG+TGG | 0.651698 | 1_4:+2389466 | Msa0143450:CDS |
| ATAGCATGAATAGTGCAGGT+TGG | 0.657205 | 1_4:-2387086 | None:intergenic |
| AACACTTGCAGTCGGCATGT+AGG | 0.670569 | 1_4:-2389424 | None:intergenic |
| TTTGTATGCATCGGAGACTG+CGG | 0.679679 | 1_4:-2389949 | None:intergenic |
| AAATATAGTCTCATCGACCG+GGG | 0.685107 | 1_4:-2390380 | None:intergenic |
| GGTATGACTCCGTTTGCAGG+AGG | 0.685848 | 1_4:-2389928 | None:intergenic |
| GTTTAATCACAAAGAAACCG+AGG | 0.686402 | 1_4:-2387155 | None:intergenic |
| AGCTACAAGTATGGGAAACG+TGG | 0.688327 | 1_4:+2390354 | Msa0143450:CDS |
| GTGCCTCTTACGCCAGACCG+AGG | 0.694511 | 1_4:-2391319 | None:intergenic |
| CCACACGAGAATTAAAAGAG+AGG | 0.699754 | 1_4:-2391273 | None:intergenic |
| TGGTATGCCTAAATTCACCA+CGG | 0.709495 | 1_4:-2391180 | None:intergenic |
| TTATTACTTTGACCACAGTG+TGG | 0.712922 | 1_4:+2389701 | Msa0143450:CDS |
| CCATTAGCAAACCTCCACGA+AGG | 0.724265 | 1_4:-2389115 | None:intergenic |
| TGATGATGAATTAATCAAGG+AGG | 0.778516 | 1_4:-2387114 | None:intergenic |
| AAAGCTGAGATGCCACACTG+TGG | 0.814882 | 1_4:-2389713 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAACAAAACTAA+CGG | - | chr1_4:2387758-2387777 | None:intergenic | 10.0% |
| !!! | TAACTATAAGTATATTATTT+TGG | + | chr1_4:2388082-2388101 | Msa0143450:intron | 10.0% |
| !! | AACATTATTTATTAAAAAGA+TGG | + | chr1_4:2389557-2389576 | Msa0143450:intron | 10.0% |
| !! | AAAACATATAAATAGATAAA+TGG | - | chr1_4:2390823-2390842 | None:intergenic | 10.0% |
| !!! | ATTTATCTATTTATATGTTT+TGG | + | chr1_4:2390822-2390841 | Msa0143450:CDS | 10.0% |
| !! | TTAAAAAAAGAAAGAAACAA+AGG | - | chr1_4:2386949-2386968 | None:intergenic | 15.0% |
| !!! | TTTTGATTTATATATCAACA+AGG | - | chr1_4:2387180-2387199 | None:intergenic | 15.0% |
| !! | AAGATTAAGATATAGATTAT+AGG | + | chr1_4:2387474-2387493 | Msa0143450:intron | 15.0% |
| !!! | CATAGATTATAAAGTTTTTT+TGG | + | chr1_4:2387907-2387926 | Msa0143450:intron | 15.0% |
| !! | TATGAAAGTTATATTTCAAT+TGG | - | chr1_4:2387933-2387952 | None:intergenic | 15.0% |
| !!! | ACTTAATTATGTTTTGTTAT+TGG | + | chr1_4:2388460-2388479 | Msa0143450:intron | 15.0% |
| !!! | ATTATTAACTTGATTTTGTA+GGG | + | chr1_4:2388748-2388767 | Msa0143450:intron | 15.0% |
| !! | TTTAATAAATAATGTTACAG+TGG | - | chr1_4:2389553-2389572 | None:intergenic | 15.0% |
| !!! | AATAAATTTTAAGAAGGTTT+AGG | - | chr1_4:2390232-2390251 | None:intergenic | 15.0% |
| !!! | CAAGAAAATAAATTTTAAGA+AGG | - | chr1_4:2390238-2390257 | None:intergenic | 15.0% |
| !!! | AAATTTTCTTTTAATGTGTA+GGG | + | chr1_4:2390722-2390741 | Msa0143450:intron | 15.0% |
| !! | ATATAAATAGATAAATGGTT+TGG | - | chr1_4:2390818-2390837 | None:intergenic | 15.0% |
| !! | GAATTTATATAACAATTGTA+TGG | + | chr1_4:2391720-2391739 | Msa0143450:three_prime_UTR | 15.0% |
| !! | CTTTGTAAAAATATTGGTAT+TGG | + | chr1_4:2387582-2387601 | Msa0143450:intron | 20.0% |
| !! | AAAACAAAACACAAAACTAT+TGG | + | chr1_4:2387627-2387646 | Msa0143450:intron | 20.0% |
| !! | CTTTGTAAATATATTGGTAT+TGG | + | chr1_4:2387664-2387683 | Msa0143450:intron | 20.0% |
| !! | CTTTGTAAAAATATTGGTAT+TGG | + | chr1_4:2387582-2387601 | Msa0143450:intron | 20.0% |
| !!! | TTTTAACAGAAAGTTAACAT+AGG | + | chr1_4:2387774-2387793 | Msa0143450:intron | 20.0% |
| !! | TTTAACAGAAAGTTAACATA+GGG | + | chr1_4:2387775-2387794 | Msa0143450:intron | 20.0% |
| !! | CTTTGTAAAAATATTGGTAT+TGG | - | chr1_4:2387582-2387601 | None:intergenic | 20.0% |
| !!! | TTTGGAATATGTTTTCATAA+AGG | + | chr1_4:2388100-2388119 | Msa0143450:intron | 20.0% |
| !!! | ATATGTTTTCATAAAGGAAA+AGG | + | chr1_4:2388106-2388125 | Msa0143450:intron | 20.0% |
| !!! | AATTAAGTTGTTTATCCAAA+CGG | - | chr1_4:2388448-2388467 | None:intergenic | 20.0% |
| !! | TCAAGTTAATAATGAAAACA+AGG | - | chr1_4:2388741-2388760 | None:intergenic | 20.0% |
| !!! | CATTATTAACTTGATTTTGT+AGG | + | chr1_4:2388747-2388766 | Msa0143450:intron | 20.0% |
| !! | ACAATTATCAAAGTTTACAT+TGG | + | chr1_4:2388913-2388932 | Msa0143450:intron | 20.0% |
| !!! | ATTTGTTTAACTTTAACTAC+AGG | + | chr1_4:2389336-2389355 | Msa0143450:intron | 20.0% |
| !!! | TTTTTTTTTTCTTTCTGAAC+AGG | + | chr1_4:2389611-2389630 | Msa0143450:intron | 20.0% |
| !! | AAATCATAATGATAAGAAGA+TGG | - | chr1_4:2389768-2389787 | None:intergenic | 20.0% |
| !!! | TTGCTTAATTCTTTTTCTAA+TGG | + | chr1_4:2389853-2389872 | Msa0143450:intron | 20.0% |
| !!! | CAAATTTTCTTTTAATGTGT+AGG | + | chr1_4:2390721-2390740 | Msa0143450:intron | 20.0% |
| !! | AAAATTAAAGAACCATAAAC+TGG | - | chr1_4:2391485-2391504 | None:intergenic | 20.0% |
| ! | AAATGAAGGTAGATTTGATT+TGG | - | chr1_4:2386914-2386933 | None:intergenic | 25.0% |
| ! | GGAAATGAATAATGAAATGA+AGG | - | chr1_4:2386928-2386947 | None:intergenic | 25.0% |
| !! | ATGTGATGATGAATTAATCA+AGG | - | chr1_4:2387120-2387139 | None:intergenic | 25.0% |
| ! | GGAAAAAGAAAAAAACACTA+TGG | + | chr1_4:2387273-2387292 | Msa0143450:exon | 25.0% |
| !!! | CACTTTTTTTTGTTTGGAAT+TGG | + | chr1_4:2387551-2387570 | Msa0143450:intron | 25.0% |
| !!! | CAATATTTTTACAAAGTGCA+GGG | - | chr1_4:2387806-2387825 | None:intergenic | 25.0% |
| ! | TTTACCAGAAAATTAACAGA+GGG | - | chr1_4:2387609-2387628 | None:intergenic | 25.0% |
| !! | TTTTACCAGAAAATTAACAG+AGG | - | chr1_4:2387610-2387629 | None:intergenic | 25.0% |
| ! | AAACACAAAACTATTGGTAT+TGG | + | chr1_4:2387633-2387652 | Msa0143450:intron | 25.0% |
| ! | CAATATATTTACAAAGTGCA+GGG | - | chr1_4:2387660-2387679 | None:intergenic | 25.0% |
| !!! | CAATATTTTTACAAAGTGCA+GGG | + | chr1_4:2387806-2387825 | Msa0143450:intron | 25.0% |
| ! | TCTATGTTTAAATGTGTCAT+TGG | - | chr1_4:2387893-2387912 | None:intergenic | 25.0% |
| !!! | AATGTTTTGATTCACTTTAC+AGG | + | chr1_4:2387953-2387972 | Msa0143450:intron | 25.0% |
| ! | AAAAAATATGTATGTTGTGG+GGG | - | chr1_4:2387986-2388005 | None:intergenic | 25.0% |
| ! | CAAAAAATATGTATGTTGTG+GGG | - | chr1_4:2387987-2388006 | None:intergenic | 25.0% |
| ! | GCAAAAAATATGTATGTTGT+GGG | - | chr1_4:2387988-2388007 | None:intergenic | 25.0% |
| ! | AGCAAAAAATATGTATGTTG+TGG | - | chr1_4:2387989-2388008 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+GGG | - | chr1_4:2388447-2388466 | None:intergenic | 25.0% |
| !! | ACTTCTTTTATAAGCTATCA+TGG | + | chr1_4:2388556-2388575 | Msa0143450:intron | 25.0% |
| !! | CTTCTTTTATAAGCTATCAT+GGG | + | chr1_4:2388557-2388576 | Msa0143450:intron | 25.0% |
| !!! | AAATAAGGACATGTTTTGAT+TGG | - | chr1_4:2388680-2388699 | None:intergenic | 25.0% |
| ! | TAATAATGAAAACAAGGCAA+TGG | - | chr1_4:2388735-2388754 | None:intergenic | 25.0% |
| ! | ATTTATCTATCTATCAACGA+AGG | + | chr1_4:2388964-2388983 | Msa0143450:intron | 25.0% |
| !! | AATATGTTGGTAAACAACTT+CGG | - | chr1_4:2389019-2389038 | None:intergenic | 25.0% |
| !! | TTTTTAATGCAGTAAGAAGA+AGG | - | chr1_4:2389168-2389187 | None:intergenic | 25.0% |
| !!! | TCATTATGATTTGCTACTTT+TGG | + | chr1_4:2389776-2389795 | Msa0143450:CDS | 25.0% |
| !!! | CATTATGATTTGCTACTTTT+GGG | + | chr1_4:2389777-2389796 | Msa0143450:CDS | 25.0% |
| ! | AGAAAAAGAATTAAGCAAGT+TGG | - | chr1_4:2389851-2389870 | None:intergenic | 25.0% |
| ! | AATATGTGTCTGACTAAAAA+AGG | + | chr1_4:2390039-2390058 | Msa0143450:intron | 25.0% |
| ! | GTTTAATATATGACATGTGT+TGG | + | chr1_4:2390271-2390290 | Msa0143450:intron | 25.0% |
| ! | TAAACTTTCAATTGCCATAA+AGG | - | chr1_4:2390557-2390576 | None:intergenic | 25.0% |
| ! | AATAATGCTATTGTCTTGAA+AGG | - | chr1_4:2390786-2390805 | None:intergenic | 25.0% |
| !!! | TTATATGTTTTGGACTAACT+TGG | + | chr1_4:2390832-2390851 | Msa0143450:CDS | 25.0% |
| !!! | TATATGTTTTGGACTAACTT+GGG | + | chr1_4:2390833-2390852 | Msa0143450:CDS | 25.0% |
| !! | GTCTTAATTATTTCTTGTCT+TGG | - | chr1_4:2391417-2391436 | None:intergenic | 25.0% |
| !!! | TATGGTTCTTTAATTTTGCT+TGG | + | chr1_4:2391488-2391507 | Msa0143450:three_prime_UTR | 25.0% |
| ! | TTCATTATCCTATATACAAC+AGG | + | chr1_4:2391537-2391556 | Msa0143450:three_prime_UTR | 25.0% |
| ! | TAACAGTTACAATTTGACAT+AGG | - | chr1_4:2391589-2391608 | None:intergenic | 25.0% |
| AGTATACTGTATAATGACAC+TGG | - | chr1_4:2386890-2386909 | None:intergenic | 30.0% | |
| ! | TGATGATGAATTAATCAAGG+AGG | - | chr1_4:2387117-2387136 | None:intergenic | 30.0% |
| !! | ACACTTTGTTGTGATTTGTT+TGG | + | chr1_4:2387218-2387237 | Msa0143450:five_prime_UTR | 30.0% |
| ! | GAAACATTTGTACCTTTTGA+AGG | + | chr1_4:2387298-2387317 | Msa0143450:CDS | 30.0% |
| TCATTCTTGATACCTTCAAA+AGG | - | chr1_4:2387313-2387332 | None:intergenic | 30.0% | |
| !!! | TCCTTGCACTTTTTTTTGTT+TGG | + | chr1_4:2387545-2387564 | Msa0143450:intron | 30.0% |
| ! | TCCAAACAAAAAAAAGTGCA+AGG | - | chr1_4:2387549-2387568 | None:intergenic | 30.0% |
| !! | CCAATATTTTTACAAAGTGC+AGG | - | chr1_4:2387805-2387824 | None:intergenic | 30.0% |
| CCTGCACTTTGTAAAAATAT+TGG | + | chr1_4:2387576-2387595 | Msa0143450:intron | 30.0% | |
| CCAATATATTTACAAAGTGC+AGG | - | chr1_4:2387661-2387680 | None:intergenic | 30.0% | |
| CCTGCACTTTGTAAATATAT+TGG | + | chr1_4:2387658-2387677 | Msa0143450:intron | 30.0% | |
| !! | CCAATATTTTTACAAAGTGC+AGG | - | chr1_4:2387805-2387824 | None:intergenic | 30.0% |
| CCTGCACTTTGTAAAAATAT+TGG | + | chr1_4:2387576-2387595 | Msa0143450:intron | 30.0% | |
| CCTGCACTTTGTAAAAATAT+TGG | - | chr1_4:2387576-2387595 | None:intergenic | 30.0% | |
| !! | CCAATATTTTTACAAAGTGC+AGG | + | chr1_4:2387805-2387824 | Msa0143450:intron | 30.0% |
| !!! | CACTTTTTTTTGTTTGGCAT+TGG | - | chr1_4:2387833-2387852 | None:intergenic | 30.0% |
| ! | TGATTCACTTTACAGGATTT+TGG | + | chr1_4:2387960-2387979 | Msa0143450:intron | 30.0% |
| ATTATACACTCAATCATTGG+TGG | + | chr1_4:2388235-2388254 | Msa0143450:CDS | 30.0% | |
| ! | AATAAGTTGAGAACAGCTTA+TGG | + | chr1_4:2388591-2388610 | Msa0143450:intron | 30.0% |
| TTATCTACTGATATAAGCAC+TGG | - | chr1_4:2388646-2388665 | None:intergenic | 30.0% | |
| ACAGCACTAGAACATAAATA+AGG | - | chr1_4:2388695-2388714 | None:intergenic | 30.0% | |
| TGCTTTGATACTATTCTTAC+TGG | + | chr1_4:2388784-2388803 | Msa0143450:CDS | 30.0% | |
| TACTGCATTAAAAAGCAGAA+AGG | + | chr1_4:2389174-2389193 | Msa0143450:CDS | 30.0% | |
| TAGTGGTAAGTGTTACATAA+AGG | + | chr1_4:2389216-2389235 | Msa0143450:intron | 30.0% | |
| CAAATGATTACAAACAGTGA+CGG | - | chr1_4:2389300-2389319 | None:intergenic | 30.0% | |
| ! | GTTTAACTTTAACTACAGGT+TGG | + | chr1_4:2389340-2389359 | Msa0143450:intron | 30.0% |
| ! | TTTTCTTTCTGAACAGGATA+TGG | + | chr1_4:2389617-2389636 | Msa0143450:intron | 30.0% |
| !!! | TTTGCTACTTTTGGGATTTT+TGG | + | chr1_4:2389785-2389804 | Msa0143450:CDS | 30.0% |
| AGTTGGAAGTTTAATGAACT+AGG | - | chr1_4:2389834-2389853 | None:intergenic | 30.0% | |
| GTATAATTCATGTTTCTTGC+TGG | + | chr1_4:2389875-2389894 | Msa0143450:intron | 30.0% | |
| ! | ATCAGTAAGAATGCTAGTTT+AGG | + | chr1_4:2390120-2390139 | Msa0143450:CDS | 30.0% |
| TGGTATTGTGACAAATGATT+AGG | + | chr1_4:2390291-2390310 | Msa0143450:intron | 30.0% | |
| !! | TAACTTGCTTCAATCAGTAT+TGG | + | chr1_4:2390462-2390481 | Msa0143450:CDS | 30.0% |
| ! | TATTTTCTTGAGAATAGGCA+TGG | - | chr1_4:2390506-2390525 | None:intergenic | 30.0% |
| ! | GTTGGTATTTTCTTGAGAAT+AGG | - | chr1_4:2390511-2390530 | None:intergenic | 30.0% |
| AAATACCAACTTCAGTACTT+TGG | + | chr1_4:2390521-2390540 | Msa0143450:CDS | 30.0% | |
| AATACCAACTTCAGTACTTT+GGG | + | chr1_4:2390522-2390541 | Msa0143450:CDS | 30.0% | |
| ATTTACTTGTATCTTCTGCT+CGG | - | chr1_4:2390625-2390644 | None:intergenic | 30.0% | |
| !! | TTTCTCCCCAAATTTTTCAA+AGG | + | chr1_4:2390918-2390937 | Msa0143450:CDS | 30.0% |
| ! | TGTGCACCTTTGAAAAATTT+GGG | - | chr1_4:2390927-2390946 | None:intergenic | 30.0% |
| AATCTCATTTCTTTGGTCAT+TGG | - | chr1_4:2391352-2391371 | None:intergenic | 30.0% | |
| !! | TATTTCTTGTCTTGGTGTTT+GGG | - | chr1_4:2391409-2391428 | None:intergenic | 30.0% |
| !! | TTATTTCTTGTCTTGGTGTT+TGG | - | chr1_4:2391410-2391429 | None:intergenic | 30.0% |
| TTTGTGTCTTAGAATGATGT+AGG | + | chr1_4:2391437-2391456 | Msa0143450:three_prime_UTR | 30.0% | |
| TACATACACCTGTTGTATAT+AGG | - | chr1_4:2391548-2391567 | None:intergenic | 30.0% | |
| GGTGTATGTAACCAAAAATA+TGG | + | chr1_4:2391558-2391577 | Msa0143450:three_prime_UTR | 30.0% | |
| ! | GCAAGCACATTGTTGTTATT+AGG | + | chr1_4:2386984-2387003 | Msa0143450:five_prime_UTR | 35.0% |
| TTATTAGGAACCACTTGAGA+AGG | + | chr1_4:2386999-2387018 | Msa0143450:five_prime_UTR | 35.0% | |
| ATTCTTCAATCCTACTTCCT+CGG | + | chr1_4:2387138-2387157 | Msa0143450:five_prime_UTR | 35.0% | |
| GTTTAATCACAAAGAAACCG+AGG | - | chr1_4:2387158-2387177 | None:intergenic | 35.0% | |
| TGTCTTTCCTTAACCTTCTT+TGG | + | chr1_4:2387248-2387267 | Msa0143450:five_prime_UTR | 35.0% | |
| TTTCCTTAACCTTCTTTGGT+GGG | + | chr1_4:2387252-2387271 | Msa0143450:five_prime_UTR | 35.0% | |
| ! | TTTCTTTTTCCCACCAAAGA+AGG | - | chr1_4:2387264-2387283 | None:intergenic | 35.0% |
| GGTATCAAGAATGATCTAAG+AGG | + | chr1_4:2387319-2387338 | Msa0143450:CDS | 35.0% | |
| TCAAGAATGATCTAAGAGGA+AGG | + | chr1_4:2387323-2387342 | Msa0143450:CDS | 35.0% | |
| TAATGTGCTACAAGCAAGAT+TGG | + | chr1_4:2387347-2387366 | Msa0143450:CDS | 35.0% | |
| ! | CAAAATCTGATGAAAGTGCA+GGG | - | chr1_4:2387866-2387885 | None:intergenic | 35.0% |
| !! | CTTTCATCAGATTTTGGCAT+TGG | + | chr1_4:2387522-2387541 | Msa0143450:intron | 35.0% |
| ! | TGCCAAACAAAAAAAAGTGC+AGG | + | chr1_4:2387834-2387853 | Msa0143450:intron | 35.0% |
| ! | GCCAAACAAAAAAAAGTGCA+GGG | + | chr1_4:2387835-2387854 | Msa0143450:intron | 35.0% |
| !!! | TCCCTGCACTTTTTTTTGTT+TGG | - | chr1_4:2387839-2387858 | None:intergenic | 35.0% |
| !! | CTTTCATCAGATTTTGGCAT+TGG | - | chr1_4:2387522-2387541 | None:intergenic | 35.0% |
| ! | CAAAATCTGATGAAAGTGCA+GGG | + | chr1_4:2387866-2387885 | Msa0143450:intron | 35.0% |
| ! | GCAATACCTGTCATTTCATT+TGG | + | chr1_4:2388012-2388031 | Msa0143450:CDS | 35.0% |
| TGTTCACCAAATGAAATGAC+AGG | - | chr1_4:2388021-2388040 | None:intergenic | 35.0% | |
| GAACAACTAGAGAGAAATAC+TGG | + | chr1_4:2388036-2388055 | Msa0143450:CDS | 35.0% | |
| !! | TGTTGATTTGATACTTGCAG+AGG | + | chr1_4:2388165-2388184 | Msa0143450:intron | 35.0% |
| !! | GTTGATTTGATACTTGCAGA+GGG | + | chr1_4:2388166-2388185 | Msa0143450:intron | 35.0% |
| !! | ACATATTGAAGTTGATGCCA+AGG | - | chr1_4:2388212-2388231 | None:intergenic | 35.0% |
| TTGGCATCAACTTCAATATG+TGG | + | chr1_4:2388211-2388230 | Msa0143450:CDS | 35.0% | |
| GGCATTATACACTCAATCAT+TGG | + | chr1_4:2388232-2388251 | Msa0143450:CDS | 35.0% | |
| !!! | GGTCAACCTTTACTGATTTT+AGG | + | chr1_4:2388256-2388275 | Msa0143450:CDS | 35.0% |
| !!! | ACCTTTACTGATTTTAGGAG+TGG | + | chr1_4:2388261-2388280 | Msa0143450:CDS | 35.0% |
| AATGTGTACATGATCACAGT+AGG | - | chr1_4:2388292-2388311 | None:intergenic | 35.0% | |
| ! | GTTTTACTTCTCCATGTTTC+CGG | + | chr1_4:2388404-2388423 | Msa0143450:intron | 35.0% |
| AAACGGGACCTAAATGTATA+GGG | - | chr1_4:2388431-2388450 | None:intergenic | 35.0% | |
| AAGCTATCATGGGTAACTTA+TGG | + | chr1_4:2388567-2388586 | Msa0143450:intron | 35.0% | |
| ! | GATTTTGTAGGGTATGTGTA+TGG | + | chr1_4:2388759-2388778 | Msa0143450:intron | 35.0% |
| GATTTCGTATCTTCTCTCTT+TGG | - | chr1_4:2389082-2389101 | None:intergenic | 35.0% | |
| ! | CAATTGAGTTTTTACCTTCG+TGG | + | chr1_4:2389101-2389120 | Msa0143450:CDS | 35.0% |
| TAAGAAGAAGGCCAAATGAA+AGG | - | chr1_4:2389156-2389175 | None:intergenic | 35.0% | |
| CGTCACTGTTTGTAATCATT+TGG | + | chr1_4:2389298-2389317 | Msa0143450:intron | 35.0% | |
| AACAACAGTCCAATTGTCAT+AGG | - | chr1_4:2389502-2389521 | None:intergenic | 35.0% | |
| TGACAATTGGACTGTTGTTA+AGG | + | chr1_4:2389503-2389522 | Msa0143450:CDS | 35.0% | |
| GTTCCTGTTGTGTTCATAAT+TGG | + | chr1_4:2389645-2389664 | Msa0143450:CDS | 35.0% | |
| TTATTACTTTGACCACAGTG+TGG | + | chr1_4:2389701-2389720 | Msa0143450:CDS | 35.0% | |
| !! | ACATTATTGTGTGGCCTTAT+TGG | + | chr1_4:2389901-2389920 | Msa0143450:CDS | 35.0% |
| TCTAGCAACTCTTAAACATC+AGG | + | chr1_4:2389975-2389994 | Msa0143450:CDS | 35.0% | |
| TCTGACTAAAAAAGGACCAA+TGG | + | chr1_4:2390047-2390066 | Msa0143450:intron | 35.0% | |
| ! | GCTAGTTTAGGACAGTTATA+TGG | + | chr1_4:2390132-2390151 | Msa0143450:CDS | 35.0% |
| ATTCAAGCAGCTACAAGTAT+GGG | + | chr1_4:2390346-2390365 | Msa0143450:CDS | 35.0% | |
| TCAAATATAGTCTCATCGAC+CGG | - | chr1_4:2390385-2390404 | None:intergenic | 35.0% | |
| !! | TTGCTTCAATCAGTATTGGT+TGG | + | chr1_4:2390466-2390485 | Msa0143450:CDS | 35.0% |
| ATACCAACTTCAGTACTTTG+GGG | + | chr1_4:2390523-2390542 | Msa0143450:CDS | 35.0% | |
| ATGGCAATTGAAAGTTTACC+TGG | + | chr1_4:2390559-2390578 | Msa0143450:CDS | 35.0% | |
| ! | TTTACCTGGAAACCAGTTTT+GGG | + | chr1_4:2390573-2390592 | Msa0143450:CDS | 35.0% |
| CTGTTTCAACAAAAGTAGCA+TGG | - | chr1_4:2390761-2390780 | None:intergenic | 35.0% | |
| ! | ACTAAGAGCATGATCATCAA+AGG | - | chr1_4:2390882-2390901 | None:intergenic | 35.0% |
| ! | GTGCACCTTTGAAAAATTTG+GGG | - | chr1_4:2390926-2390945 | None:intergenic | 35.0% |
| ! | GTGTGCACCTTTGAAAAATT+TGG | - | chr1_4:2390928-2390947 | None:intergenic | 35.0% |
| CAATATATCTTACCGATGCA+AGG | - | chr1_4:2391004-2391023 | None:intergenic | 35.0% | |
| GATTAACAGCAATCTGAGTT+TGG | + | chr1_4:2391100-2391119 | Msa0143450:intron | 35.0% | |
| ATTGATCTTTGGACTGTTAG+TGG | - | chr1_4:2391203-2391222 | None:intergenic | 35.0% | |
| ! | TTAGGATCATTTCTTGGTGT+TGG | - | chr1_4:2391235-2391254 | None:intergenic | 35.0% |
| !! | CTCTCTTTTAATTCTCGTGT+GGG | + | chr1_4:2391274-2391293 | Msa0143450:CDS | 35.0% |
| ACCAAAGAAATGAGATTGTC+AGG | + | chr1_4:2391355-2391374 | Msa0143450:CDS | 35.0% | |
| ACCTGACAATCTCATTTCTT+TGG | - | chr1_4:2391359-2391378 | None:intergenic | 35.0% | |
| AAGAAATGAGATTGTCAGGT+AGG | + | chr1_4:2391359-2391378 | Msa0143450:CDS | 35.0% | |
| AGAAATGAGATTGTCAGGTA+GGG | + | chr1_4:2391360-2391379 | Msa0143450:CDS | 35.0% | |
| GTTGCTTCATTTCCAGTTTA+TGG | + | chr1_4:2391470-2391489 | Msa0143450:three_prime_UTR | 35.0% | |
| ! | CATAGGAAGCTCCATATTTT+TGG | - | chr1_4:2391572-2391591 | None:intergenic | 35.0% |
| ATAGCATGAATAGTGCAGGT+TGG | - | chr1_4:2387089-2387108 | None:intergenic | 40.0% | |
| GCAAATAGCATGAATAGTGC+AGG | - | chr1_4:2387093-2387112 | None:intergenic | 40.0% | |
| CTTTCCTTAACCTTCTTTGG+TGG | + | chr1_4:2387251-2387270 | Msa0143450:five_prime_UTR | 40.0% | |
| TTTCCCACCAAAGAAGGTTA+AGG | - | chr1_4:2387258-2387277 | None:intergenic | 40.0% | |
| ! | CCAAAATCTGATGAAAGTGC+AGG | - | chr1_4:2387865-2387884 | None:intergenic | 40.0% |
| ! | CCTGCACTTTCATCAGATTT+TGG | + | chr1_4:2387516-2387535 | Msa0143450:intron | 40.0% |
| ! | TGGTCCCTCTGTTAATTTTC+TGG | + | chr1_4:2387602-2387621 | Msa0143450:intron | 40.0% |
| ! | CCTGCACTTTCATCAGATTT+TGG | - | chr1_4:2387516-2387535 | None:intergenic | 40.0% |
| ! | CCAAAATCTGATGAAAGTGC+AGG | + | chr1_4:2387865-2387884 | Msa0143450:intron | 40.0% |
| GCCACTCCTAAAATCAGTAA+AGG | - | chr1_4:2388265-2388284 | None:intergenic | 40.0% | |
| TGCTAAAGAAAGACCTGAGT+TGG | + | chr1_4:2388324-2388343 | Msa0143450:CDS | 40.0% | |
| GCTAAAGAAAGACCTGAGTT+GGG | + | chr1_4:2388325-2388344 | Msa0143450:CDS | 40.0% | |
| ! | TAGGAACCTGTTTCTTGGAT+GGG | + | chr1_4:2388348-2388367 | Msa0143450:CDS | 40.0% |
| AACGGGACCTAAATGTATAG+GGG | - | chr1_4:2388430-2388449 | None:intergenic | 40.0% | |
| CAAACGGGACCTAAATGTAT+AGG | - | chr1_4:2388432-2388451 | None:intergenic | 40.0% | |
| CTATACATTTAGGTCCCGTT+TGG | + | chr1_4:2388430-2388449 | Msa0143450:intron | 40.0% | |
| CTATTCTTACTGGCCATCTT+AGG | + | chr1_4:2388794-2388813 | Msa0143450:CDS | 40.0% | |
| GCACAAGGACAACAATATGT+TGG | - | chr1_4:2389032-2389051 | None:intergenic | 40.0% | |
| ATATTGTTGTCCTTGTGCCA+GGG | + | chr1_4:2389034-2389053 | Msa0143450:intron | 40.0% | |
| ! | TTGAGTTTTTACCTTCGTGG+AGG | + | chr1_4:2389104-2389123 | Msa0143450:CDS | 40.0% |
| TTCGCTTTGGTCCTTTCATT+TGG | + | chr1_4:2389142-2389161 | Msa0143450:CDS | 40.0% | |
| AAAGCAGAAAGGCTAGATCA+TGG | + | chr1_4:2389185-2389204 | Msa0143450:CDS | 40.0% | |
| GTCTCACTCTATACATAAGC+CGG | + | chr1_4:2389246-2389265 | Msa0143450:intron | 40.0% | |
| GCTCCAATTATGAACACAAC+AGG | - | chr1_4:2389651-2389670 | None:intergenic | 40.0% | |
| TGCTGGAAGACATTATTGTG+TGG | + | chr1_4:2389892-2389911 | Msa0143450:intron | 40.0% | |
| TTGCAGGAGGAATTCCAATA+AGG | - | chr1_4:2389918-2389937 | None:intergenic | 40.0% | |
| ATTGGAATTCCTCCTGCAAA+CGG | + | chr1_4:2389919-2389938 | Msa0143450:CDS | 40.0% | |
| GCTAGACTCTTTGTATGCAT+CGG | - | chr1_4:2389961-2389980 | None:intergenic | 40.0% | |
| AGCAACTGTAACAACACCAT+TGG | - | chr1_4:2390066-2390085 | None:intergenic | 40.0% | |
| CTTACTGATACTGTTTCGAG+CGG | - | chr1_4:2390109-2390128 | None:intergenic | 40.0% | |
| !! | TAAGAGGTGTCTGCATTTGA+TGG | - | chr1_4:2390176-2390195 | None:intergenic | 40.0% |
| GTGACAAATGATTAGGCACA+AGG | + | chr1_4:2390298-2390317 | Msa0143450:intron | 40.0% | |
| CATACTTGTAGCTGCTTGAA+TGG | - | chr1_4:2390347-2390366 | None:intergenic | 40.0% | |
| CATTCAAGCAGCTACAAGTA+TGG | + | chr1_4:2390345-2390364 | Msa0143450:CDS | 40.0% | |
| AAATATAGTCTCATCGACCG+GGG | - | chr1_4:2390383-2390402 | None:intergenic | 40.0% | |
| CAAATATAGTCTCATCGACC+GGG | - | chr1_4:2390384-2390403 | None:intergenic | 40.0% | |
| !! | CTTCAATCAGTATTGGTTGG+AGG | + | chr1_4:2390469-2390488 | Msa0143450:CDS | 40.0% |
| ! | GTTTACCTGGAAACCAGTTT+TGG | + | chr1_4:2390572-2390591 | Msa0143450:CDS | 40.0% |
| AAAGGATCCTTTCCCAAAAC+TGG | - | chr1_4:2390588-2390607 | None:intergenic | 40.0% | |
| !! | TCGGTGCTGTGAAAAGTAAA+AGG | - | chr1_4:2390606-2390625 | None:intergenic | 40.0% |
| !! | GGGAGAAAGTATTGTCTTAG+TGG | - | chr1_4:2390906-2390925 | None:intergenic | 40.0% |
| TTTACCGTTCAACCTTGCAT+CGG | + | chr1_4:2390989-2391008 | Msa0143450:CDS | 40.0% | |
| TGGTATGCCTAAATTCACCA+CGG | - | chr1_4:2391183-2391202 | None:intergenic | 40.0% | |
| !! | ATCATTTCTTGGTGTTGGAG+TGG | - | chr1_4:2391230-2391249 | None:intergenic | 40.0% |
| !!! | CGGCTTTTAGGATCATTTCT+TGG | - | chr1_4:2391241-2391260 | None:intergenic | 40.0% |
| ! | GAGAATTAAAAGAGAGGTGC+GGG | - | chr1_4:2391270-2391289 | None:intergenic | 40.0% |
| CGAGAATTAAAAGAGAGGTG+CGG | - | chr1_4:2391271-2391290 | None:intergenic | 40.0% | |
| CCACACGAGAATTAAAAGAG+AGG | - | chr1_4:2391276-2391295 | None:intergenic | 40.0% | |
| !! | CCTCTCTTTTAATTCTCGTG+TGG | + | chr1_4:2391273-2391292 | Msa0143450:CDS | 40.0% |
| TTCTTTGGTCATTGGACTGT+TGG | - | chr1_4:2391344-2391363 | None:intergenic | 40.0% | |
| GAAATGAGATTGTCAGGTAG+GGG | + | chr1_4:2391361-2391380 | Msa0143450:CDS | 40.0% | |
| GTGTCTTAGAATGATGTAGG+AGG | + | chr1_4:2391440-2391459 | Msa0143450:three_prime_UTR | 40.0% | |
| !! | CAACCTGCTTTTGATACAGC+TGG | + | chr1_4:2387025-2387044 | Msa0143450:five_prime_UTR | 45.0% |
| ATGCCAGCTGTATCAAAAGC+AGG | - | chr1_4:2387031-2387050 | None:intergenic | 45.0% | |
| !! | CAGGTTGGCTTCAAAGACAT+GGG | - | chr1_4:2387074-2387093 | None:intergenic | 45.0% |
| CACAAAGAAACCGAGGAAGT+AGG | - | chr1_4:2387151-2387170 | None:intergenic | 45.0% | |
| TGCTACAAGCAAGATTGGAC+AGG | + | chr1_4:2387352-2387371 | Msa0143450:CDS | 45.0% | |
| TACAAGCAAGATTGGACAGG+TGG | + | chr1_4:2387355-2387374 | Msa0143450:CDS | 45.0% | |
| GTGGAATCAAAGCAGGTGTA+AGG | + | chr1_4:2387374-2387393 | Msa0143450:CDS | 45.0% | |
| ! | GATGAAAGTGCAGGGACTAA+AGG | - | chr1_4:2387510-2387529 | None:intergenic | 45.0% |
| !! | ATATTGGTATTGGTGCCACG+TGG | + | chr1_4:2387705-2387724 | Msa0143450:intron | 45.0% |
| TCTGACAGCTGTTCAAACCT+TGG | + | chr1_4:2388192-2388211 | Msa0143450:CDS | 45.0% | |
| ! | AAGAAAGACCTGAGTTGGGT+AGG | + | chr1_4:2388329-2388348 | Msa0143450:CDS | 45.0% |
| ! | TTGGGTAGGAACCTGTTTCT+TGG | + | chr1_4:2388343-2388362 | Msa0143450:CDS | 45.0% |
| ! | GTAGGAACCTGTTTCTTGGA+TGG | + | chr1_4:2388347-2388366 | Msa0143450:CDS | 45.0% |
| TTTCCGGCCCCTATACATTT+AGG | + | chr1_4:2388420-2388439 | Msa0143450:intron | 45.0% | |
| GATGGAACATGCTCCTAAGA+TGG | - | chr1_4:2388810-2388829 | None:intergenic | 45.0% | |
| AAACAACTCTCCCGCAATTC+GGG | - | chr1_4:2388846-2388865 | None:intergenic | 45.0% | |
| CAAACAACTCTCCCGCAATT+CGG | - | chr1_4:2388847-2388866 | None:intergenic | 45.0% | |
| CATATTGTTGTCCTTGTGCC+AGG | + | chr1_4:2389033-2389052 | Msa0143450:intron | 45.0% | |
| !! | CTTCGTGGAGGTTTGCTAAT+GGG | + | chr1_4:2389116-2389135 | Msa0143450:CDS | 45.0% |
| TGCTAATGGGATGTTCGCTT+TGG | + | chr1_4:2389129-2389148 | Msa0143450:CDS | 45.0% | |
| AAGGCTAGATCATGGCGTTA+TGG | + | chr1_4:2389193-2389212 | Msa0143450:CDS | 45.0% | |
| AGATCATGGCGTTATGGTAG+TGG | + | chr1_4:2389199-2389218 | Msa0143450:CDS | 45.0% | |
| TTTCATGTTGCAGAGACAGC+CGG | - | chr1_4:2389268-2389287 | None:intergenic | 45.0% | |
| GTCCAAACTAGGACCATAAG+CGG | - | chr1_4:2389396-2389415 | None:intergenic | 45.0% | |
| CTTATGGTCCTAGTTTGGAC+AGG | + | chr1_4:2389396-2389415 | Msa0143450:CDS | 45.0% | |
| ! | CCATTTGGAACACTTGCAGT+CGG | - | chr1_4:2389435-2389454 | None:intergenic | 45.0% |
| GTGTTCCAAATGGTATCCCA+AGG | + | chr1_4:2389442-2389461 | Msa0143450:CDS | 45.0% | |
| ACCACGGATTTGGACTAAAG+AGG | - | chr1_4:2389470-2389489 | None:intergenic | 45.0% | |
| AGCACTGCAATCATAGTTGC+TGG | - | chr1_4:2389681-2389700 | None:intergenic | 45.0% | |
| TTTGTATGCATCGGAGACTG+CGG | - | chr1_4:2389952-2389971 | None:intergenic | 45.0% | |
| ! | GCAGACACCTCTTATTTACC+AGG | + | chr1_4:2390182-2390201 | Msa0143450:CDS | 45.0% |
| GATGGGTCCTGGTAAATAAG+AGG | - | chr1_4:2390192-2390211 | None:intergenic | 45.0% | |
| ! | ATCGACTTACTCGAGCAGAT+GGG | - | chr1_4:2390209-2390228 | None:intergenic | 45.0% |
| AGCTACAAGTATGGGAAACG+TGG | + | chr1_4:2390354-2390373 | Msa0143450:CDS | 45.0% | |
| !! | AGATGACTTGCTTCCTGTTG+AGG | + | chr1_4:2390420-2390439 | Msa0143450:CDS | 45.0% |
| CTTGCTTCCTGTTGAGGTAA+AGG | + | chr1_4:2390426-2390445 | Msa0143450:CDS | 45.0% | |
| CGTTGTTCCTTTACCTCAAC+AGG | - | chr1_4:2390436-2390455 | None:intergenic | 45.0% | |
| !! | TAGCCCCAAAGTACTGAAGT+TGG | - | chr1_4:2390529-2390548 | None:intergenic | 45.0% |
| ! | TTGGGGCTACTTTGCCTTTA+TGG | + | chr1_4:2390540-2390559 | Msa0143450:CDS | 45.0% |
| ! | CTTTCCCAAAACTGGTTTCC+AGG | - | chr1_4:2390580-2390599 | None:intergenic | 45.0% |
| !!! | CTGGAAACCAGTTTTGGGAA+AGG | + | chr1_4:2390578-2390597 | Msa0143450:CDS | 45.0% |
| CTAACTTGGGTACCTATTGC+TGG | + | chr1_4:2390846-2390865 | Msa0143450:CDS | 45.0% | |
| GGAAACATGACTCCAGCAAT+AGG | - | chr1_4:2390861-2390880 | None:intergenic | 45.0% | |
| CTTACCGATGCAAGGTTGAA+CGG | - | chr1_4:2390996-2391015 | None:intergenic | 45.0% | |
| CAAGAAGCCGTGGTGAATTT+AGG | + | chr1_4:2391173-2391192 | Msa0143450:CDS | 45.0% | |
| GGAGTGGAGCTATTGATCTT+TGG | - | chr1_4:2391214-2391233 | None:intergenic | 45.0% | |
| !! | TGTCTTGGTGTTTGGGATCA+GGG | - | chr1_4:2391402-2391421 | None:intergenic | 45.0% |
| !! | TTGTCTTGGTGTTTGGGATC+AGG | - | chr1_4:2391403-2391422 | None:intergenic | 45.0% |
| !! | TAAACATATATATATTAAAT+TGG | - | chr1_4:2390668-2390687 | None:intergenic | 5.0% |
| CAGGTTGTGACCTTCTCAAG+TGG | - | chr1_4:2387012-2387031 | None:intergenic | 50.0% | |
| !! | GCAGGTTGGCTTCAAAGACA+TGG | - | chr1_4:2387075-2387094 | None:intergenic | 50.0% |
| TGGACAGGTGGAATCAAAGC+AGG | + | chr1_4:2387367-2387386 | Msa0143450:CDS | 50.0% | |
| CCACGTGGCGTGAAATGATT+GGG | + | chr1_4:2387720-2387739 | Msa0143450:intron | 50.0% | |
| ! | AAAACTAACGGAGTGCCACG+TGG | - | chr1_4:2387746-2387765 | None:intergenic | 50.0% |
| AACAGGTTCCTACCCAACTC+AGG | - | chr1_4:2388340-2388359 | None:intergenic | 50.0% | |
| ! | AACCTGTTTCTTGGATGGGC+TGG | + | chr1_4:2388352-2388371 | Msa0143450:CDS | 50.0% |
| ATCCAGCCCATCCAAGAAAC+AGG | - | chr1_4:2388357-2388376 | None:intergenic | 50.0% | |
| !! | TGTTTCTTGGATGGGCTGGA+TGG | + | chr1_4:2388356-2388375 | Msa0143450:CDS | 50.0% |
| ATGTATAGGGGCCGGAAACA+TGG | - | chr1_4:2388418-2388437 | None:intergenic | 50.0% | |
| GGACCTAAATGTATAGGGGC+CGG | - | chr1_4:2388426-2388445 | None:intergenic | 50.0% | |
| CTAGTGCTGTCACTGTCATG+TGG | + | chr1_4:2388705-2388724 | Msa0143450:intron | 50.0% | |
| !! | TCGGGTAAAGCGGTTGATGA+TGG | - | chr1_4:2388828-2388847 | None:intergenic | 50.0% |
| CAACCGCTTTACCCGAATTG+CGG | + | chr1_4:2388832-2388851 | Msa0143450:CDS | 50.0% | |
| AACCGCTTTACCCGAATTGC+GGG | + | chr1_4:2388833-2388852 | Msa0143450:CDS | 50.0% | |
| CGAATTGCGGGAGAGTTGTT+TGG | + | chr1_4:2388845-2388864 | Msa0143450:CDS | 50.0% | |
| GAAACTCATCCACAAGTCCC+TGG | - | chr1_4:2389054-2389073 | None:intergenic | 50.0% | |
| CCATTAGCAAACCTCCACGA+AGG | - | chr1_4:2389118-2389137 | None:intergenic | 50.0% | |
| !! | CCTTCGTGGAGGTTTGCTAA+TGG | + | chr1_4:2389115-2389134 | Msa0143450:CDS | 50.0% |
| GCACACCATAGTCGGCTATA+AGG | - | chr1_4:2389374-2389393 | None:intergenic | 50.0% | |
| CATAAGCGGCACACCATAGT+CGG | - | chr1_4:2389382-2389401 | None:intergenic | 50.0% | |
| ! | TGCCGCTTATGGTCCTAGTT+TGG | + | chr1_4:2389391-2389410 | Msa0143450:CDS | 50.0% |
| AGGACACACCTGTCCAAACT+AGG | - | chr1_4:2389407-2389426 | None:intergenic | 50.0% | |
| AACACTTGCAGTCGGCATGT+AGG | - | chr1_4:2389427-2389446 | None:intergenic | 50.0% | |
| CCGACTGCAAGTGTTCCAAA+TGG | + | chr1_4:2389432-2389451 | Msa0143450:CDS | 50.0% | |
| !! | TTGGACTAAAGAGGCGCCTT+GGG | - | chr1_4:2389461-2389480 | None:intergenic | 50.0% |
| !! | TTTGGACTAAAGAGGCGCCT+TGG | - | chr1_4:2389462-2389481 | None:intergenic | 50.0% |
| GCCTCTTTAGTCCAAATCCG+TGG | + | chr1_4:2389466-2389485 | Msa0143450:CDS | 50.0% | |
| AGTCCAATTGTCATAGGCGC+CGG | - | chr1_4:2389496-2389515 | None:intergenic | 50.0% | |
| AAAGCTGAGATGCCACACTG+TGG | - | chr1_4:2389716-2389735 | None:intergenic | 50.0% | |
| ! | GATCGACTTACTCGAGCAGA+TGG | - | chr1_4:2390210-2390229 | None:intergenic | 50.0% |
| AGGTGCACACCTTCAAGACT+TGG | + | chr1_4:2390938-2390957 | Msa0143450:CDS | 50.0% | |
| CAGCTGCATCCAAGTCTTGA+AGG | - | chr1_4:2390950-2390969 | None:intergenic | 50.0% | |
| CTTGGATGCAGCTGAGTATG+AGG | + | chr1_4:2390956-2390975 | Msa0143450:CDS | 50.0% | |
| ! | CAGCAATCTGAGTTTGGAGC+TGG | + | chr1_4:2391106-2391125 | Msa0143450:intron | 50.0% |
| GGAGCTGGTGCTTCTCATAT+CGG | + | chr1_4:2391121-2391140 | Msa0143450:CDS | 50.0% | |
| GGTGCTTCTCATATCGGAGA+AGG | + | chr1_4:2391127-2391146 | Msa0143450:CDS | 50.0% | |
| GAAGTCATCACAAGAAGCCG+TGG | + | chr1_4:2391163-2391182 | Msa0143450:CDS | 50.0% | |
| ! | TGTTTGGGATCAGGGTTGAG+AGG | - | chr1_4:2391394-2391413 | None:intergenic | 50.0% |
| GCCACGTGGCGTGAAATGAT+TGG | + | chr1_4:2387719-2387738 | Msa0143450:intron | 55.0% | |
| CCCAATCATTTCACGCCACG+TGG | - | chr1_4:2387723-2387742 | None:intergenic | 55.0% | |
| CGTGAAATGATTGGGCCACG+TGG | + | chr1_4:2387728-2387747 | Msa0143450:intron | 55.0% | |
| CTCCCGCAATTCGGGTAAAG+CGG | - | chr1_4:2388838-2388857 | None:intergenic | 55.0% | |
| ATCCACAAGTCCCTGGCACA+AGG | - | chr1_4:2389047-2389066 | None:intergenic | 55.0% | |
| ! | CGCAGCCTTATAGCCGACTA+TGG | + | chr1_4:2389366-2389385 | Msa0143450:CDS | 55.0% |
| !! | CGACTATGGTGTGCCGCTTA+TGG | + | chr1_4:2389380-2389399 | Msa0143450:CDS | 55.0% |
| AGGCGCCTTGGGATACCATT+TGG | - | chr1_4:2389450-2389469 | None:intergenic | 55.0% | |
| GTCCAATTGTCATAGGCGCC+GGG | - | chr1_4:2389495-2389514 | None:intergenic | 55.0% | |
| GGTATGACTCCGTTTGCAGG+AGG | - | chr1_4:2389931-2389950 | None:intergenic | 55.0% | |
| TGCGGTATGACTCCGTTTGC+AGG | - | chr1_4:2389934-2389953 | None:intergenic | 55.0% | |
| TTACTCGAGCAGATGGGTCC+TGG | - | chr1_4:2390203-2390222 | None:intergenic | 55.0% | |
| TCGCGACTGAGCAAAGTCCT+CGG | + | chr1_4:2391302-2391321 | Msa0143450:CDS | 55.0% | |
| ACTGAGCAAAGTCCTCGGTC+TGG | + | chr1_4:2391307-2391326 | Msa0143450:CDS | 55.0% | |
| GTCCTTGTGCCAGGGACTTG+TGG | + | chr1_4:2389042-2389061 | Msa0143450:intron | 60.0% | |
| AGTCCAAATCCGTGGTCGCC+CGG | + | chr1_4:2389474-2389493 | Msa0143450:CDS | 60.0% | |
| TATGGGAAACGTGGACGCCC+CGG | + | chr1_4:2390363-2390382 | Msa0143450:CDS | 60.0% | |
| ! | TGCGGGCTCAGACGGCTTTT+AGG | - | chr1_4:2391253-2391272 | None:intergenic | 60.0% |
| ! | AAGAGAGGTGCGGGCTCAGA+CGG | - | chr1_4:2391261-2391280 | None:intergenic | 60.0% |
| AGTCCTCGGTCTGGCGTAAG+AGG | + | chr1_4:2391316-2391335 | Msa0143450:CDS | 60.0% | |
| CGCCCGGCGCCTATGACAAT+TGG | + | chr1_4:2389490-2389509 | Msa0143450:CDS | 65.0% | |
| GTGCCTCTTACGCCAGACCG+AGG | - | chr1_4:2391322-2391341 | None:intergenic | 65.0% | |
| !! | TCATAGGCGCCGGGCGACCA+CGG | - | chr1_4:2389486-2389505 | None:intergenic | 70.0% |
| GCGCCGGGCGACCACGGATT+TGG | - | chr1_4:2389480-2389499 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 2386859 | 2391755 | 2386859 | ID=Msa0143450;Name=Msa0143450 |
| chr1_4 | mRNA | 2386859 | 2391755 | 2386859 | ID=Msa0143450-mRNA-1;Parent=Msa0143450;Name=Msa0143450-mRNA-1;_AED=0.08;_eAED=0.08;_QI=405|0.91|0.92|1|0.91|0.84|13|326|728 |
| chr1_4 | exon | 2386859 | 2386902 | 2386859 | ID=Msa0143450-mRNA-1:exon:1069;Parent=Msa0143450-mRNA-1 |
| chr1_4 | exon | 2386931 | 2387395 | 2386931 | ID=Msa0143450-mRNA-1:exon:1070;Parent=Msa0143450-mRNA-1 |
| chr1_4 | exon | 2387975 | 2388057 | 2387975 | ID=Msa0143450-mRNA-1:exon:1071;Parent=Msa0143450-mRNA-1 |
| chr1_4 | exon | 2388185 | 2388377 | 2388185 | ID=Msa0143450-mRNA-1:exon:1072;Parent=Msa0143450-mRNA-1 |
| chr1_4 | exon | 2388769 | 2388907 | 2388769 | ID=Msa0143450-mRNA-1:exon:1073;Parent=Msa0143450-mRNA-1 |
| chr1_4 | exon | 2389055 | 2389220 | 2389055 | ID=Msa0143450-mRNA-1:exon:1074;Parent=Msa0143450-mRNA-1 |
| chr1_4 | exon | 2389358 | 2389536 | 2389358 | ID=Msa0143450-mRNA-1:exon:1075;Parent=Msa0143450-mRNA-1 |
| chr1_4 | exon | 2389633 | 2389806 | 2389633 | ID=Msa0143450-mRNA-1:exon:1076;Parent=Msa0143450-mRNA-1 |
| chr1_4 | exon | 2389901 | 2389996 | 2389901 | ID=Msa0143450-mRNA-1:exon:1077;Parent=Msa0143450-mRNA-1 |
| chr1_4 | exon | 2390081 | 2390218 | 2390081 | ID=Msa0143450-mRNA-1:exon:1078;Parent=Msa0143450-mRNA-1 |
| chr1_4 | exon | 2390313 | 2390638 | 2390313 | ID=Msa0143450-mRNA-1:exon:1079;Parent=Msa0143450-mRNA-1 |
| chr1_4 | exon | 2390743 | 2391010 | 2390743 | ID=Msa0143450-mRNA-1:exon:1080;Parent=Msa0143450-mRNA-1 |
| chr1_4 | exon | 2391109 | 2391755 | 2391109 | ID=Msa0143450-mRNA-1:exon:1081;Parent=Msa0143450-mRNA-1 |
| chr1_4 | five_prime_UTR | 2386859 | 2386902 | 2386859 | ID=Msa0143450-mRNA-1:five_prime_utr;Parent=Msa0143450-mRNA-1 |
| chr1_4 | five_prime_UTR | 2386931 | 2387291 | 2386931 | ID=Msa0143450-mRNA-1:five_prime_utr;Parent=Msa0143450-mRNA-1 |
| chr1_4 | CDS | 2387292 | 2387395 | 2387292 | ID=Msa0143450-mRNA-1:cds;Parent=Msa0143450-mRNA-1 |
| chr1_4 | CDS | 2387975 | 2388057 | 2387975 | ID=Msa0143450-mRNA-1:cds;Parent=Msa0143450-mRNA-1 |
| chr1_4 | CDS | 2388185 | 2388377 | 2388185 | ID=Msa0143450-mRNA-1:cds;Parent=Msa0143450-mRNA-1 |
| chr1_4 | CDS | 2388769 | 2388907 | 2388769 | ID=Msa0143450-mRNA-1:cds;Parent=Msa0143450-mRNA-1 |
| chr1_4 | CDS | 2389055 | 2389220 | 2389055 | ID=Msa0143450-mRNA-1:cds;Parent=Msa0143450-mRNA-1 |
| chr1_4 | CDS | 2389358 | 2389536 | 2389358 | ID=Msa0143450-mRNA-1:cds;Parent=Msa0143450-mRNA-1 |
| chr1_4 | CDS | 2389633 | 2389806 | 2389633 | ID=Msa0143450-mRNA-1:cds;Parent=Msa0143450-mRNA-1 |
| chr1_4 | CDS | 2389901 | 2389996 | 2389901 | ID=Msa0143450-mRNA-1:cds;Parent=Msa0143450-mRNA-1 |
| chr1_4 | CDS | 2390081 | 2390218 | 2390081 | ID=Msa0143450-mRNA-1:cds;Parent=Msa0143450-mRNA-1 |
| chr1_4 | CDS | 2390313 | 2390638 | 2390313 | ID=Msa0143450-mRNA-1:cds;Parent=Msa0143450-mRNA-1 |
| chr1_4 | CDS | 2390743 | 2391010 | 2390743 | ID=Msa0143450-mRNA-1:cds;Parent=Msa0143450-mRNA-1 |
| chr1_4 | CDS | 2391109 | 2391429 | 2391109 | ID=Msa0143450-mRNA-1:cds;Parent=Msa0143450-mRNA-1 |
| chr1_4 | three_prime_UTR | 2391430 | 2391755 | 2391430 | ID=Msa0143450-mRNA-1:three_prime_utr;Parent=Msa0143450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
