AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0046930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046930 MtrunA17_Chr7g0274131 99.204 377 2 1 1 376 1 377 0.0 783
Msa0046930 MtrunA17_Chr1g0190771 91.512 377 31 1 1 376 1 377 0.0 731
Msa0046930 MtrunA17_Chr4g0067461 28.254 315 208 8 29 339 112 412 5.61e-28 114
Msa0046930 MtrunA17_Chr2g0327981 28.115 313 201 9 28 330 38 336 1.70e-27 111
Msa0046930 MtrunA17_Chr4g0031131 27.083 336 210 11 15 330 10 330 4.24e-27 110
Msa0046930 MtrunA17_Chr1g0195521 27.378 347 212 12 28 348 118 450 5.93e-25 105
Msa0046930 MtrunA17_Chr7g0268991 25.309 324 212 11 29 341 16 320 1.19e-19 88.6
Msa0046930 MtrunA17_Chr1g0182091 28.033 239 154 7 114 345 1 228 2.24e-17 80.5
Msa0046930 MtrunA17_Chr5g0398811 24.852 338 212 12 28 334 90 416 1.87e-16 80.5
Msa0046930 MtrunA17_Chr4g0056941 24.118 340 214 11 30 337 95 422 1.26e-15 77.8
Msa0046930 MtrunA17_Chr4g0011281 25.000 336 210 13 30 334 103 427 1.43e-15 77.8
Msa0046930 MtrunA17_Chr7g0230291 24.110 365 227 14 6 334 58 408 3.34e-14 73.6
Msa0046930 MtrunA17_Chr3g0121661 23.757 362 204 14 30 342 101 439 2.43e-13 70.9
Msa0046930 MtrunA17_Chr4g0073351 23.599 339 215 11 28 334 95 421 3.11e-13 70.9
Msa0046930 MtrunA17_Chr1g0147841 26.606 327 213 12 26 336 3 318 8.56e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046930 AT5G28840.2 89.655 377 38 1 1 376 1 377 0.0 717
Msa0046930 AT5G28840.1 89.655 377 38 1 1 376 1 377 0.0 717
Msa0046930 AT3G46440.2 29.582 311 195 9 28 328 29 325 2.95e-29 116
Msa0046930 AT3G46440.1 29.582 311 195 9 28 328 29 325 2.95e-29 116
Msa0046930 AT3G53520.1 29.712 313 195 11 26 328 118 415 5.44e-29 117
Msa0046930 AT5G59290.4 28.939 311 197 9 28 328 1 297 2.38e-28 113
Msa0046930 AT3G62830.2 28.525 305 205 8 28 328 119 414 2.75e-28 115
Msa0046930 AT3G62830.1 28.525 305 205 8 28 328 119 414 2.75e-28 115
Msa0046930 AT5G59290.1 28.939 311 197 9 28 328 30 326 3.16e-28 113
Msa0046930 AT2G47650.1 28.525 305 205 8 28 328 121 416 3.69e-28 115
Msa0046930 AT5G59290.2 28.939 311 197 9 28 328 45 341 4.28e-28 113
Msa0046930 AT5G59290.3 28.939 311 197 9 28 328 23 319 6.41e-28 112
Msa0046930 AT2G28760.1 27.974 311 200 9 28 328 31 327 1.65e-27 111
Msa0046930 AT2G28760.2 27.974 311 200 9 28 328 31 327 1.65e-27 111
Msa0046930 AT2G28760.3 27.974 311 200 9 28 328 31 327 1.65e-27 111
Msa0046930 AT2G28760.4 27.974 311 200 9 28 328 62 358 5.12e-27 110
Msa0046930 AT3G53520.2 29.073 313 195 12 26 328 118 413 4.29e-26 108
Msa0046930 AT2G47650.2 27.796 313 207 9 28 330 121 424 4.45e-26 108
Msa0046930 AT3G53520.4 27.219 338 194 13 26 328 118 438 4.06e-24 103
Msa0046930 AT1G73250.1 25.625 320 202 8 29 334 18 315 1.05e-21 95.1
Msa0046930 AT1G17890.2 25.000 324 217 8 29 343 13 319 1.25e-21 94.7
Msa0046930 AT1G17890.3 25.000 324 217 8 29 343 13 319 1.25e-21 94.7
Msa0046930 AT1G17890.1 25.000 324 217 8 29 343 21 327 1.28e-21 94.7
Msa0046930 AT2G45310.1 25.676 370 217 16 6 334 71 423 3.19e-18 86.3
Msa0046930 AT4G00110.1 25.223 337 208 13 30 334 93 417 7.98e-16 79.0
Msa0046930 AT1G02000.1 24.438 356 222 13 28 351 92 432 1.24e-14 75.5
Msa0046930 AT3G14790.1 26.074 326 216 14 30 340 9 324 6.03e-13 70.9
Msa0046930 AT3G14790.2 26.074 326 216 14 30 340 12 327 6.73e-13 70.5
Msa0046930 AT3G23820.1 23.823 361 221 15 28 348 112 458 1.65e-12 68.9
Msa0046930 AT4G30440.1 23.529 340 214 12 28 334 88 414 2.23e-12 68.6
Msa0046930 AT1G53500.1 25.455 330 213 14 30 340 11 326 6.18e-12 67.4

Find 127 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTATCTTAAGGTTAATTT+TGG 0.179489 1_1:-79348154 Msa0046930:three_prime_UTR
AAGCATTATAACAAAGATTT+TGG 0.185817 1_1:-79350392 Msa0046930:CDS
GTTTCCAACTGTTTGAATTC+AGG 0.202846 1_1:+79350603 None:intergenic
AGTTCCATCTTGTTGATCTT+AGG 0.236542 1_1:-79351257 Msa0046930:CDS
GGCTTAGAATTACATACTTT+TGG 0.241436 1_1:-79348404 Msa0046930:CDS
CCCAATAAATAGTCCTTAAA+AGG 0.242441 1_1:+79347986 None:intergenic
TTTCAATCTTGCTGCTGATA+TGG 0.252773 1_1:-79351190 Msa0046930:CDS
AAGCTAAGAATTTCCATTAC+TGG 0.266863 1_1:-79351396 Msa0046930:CDS
TCTTGTTGATCTTAGGGTTA+TGG 0.275401 1_1:-79351250 Msa0046930:CDS
CATAACATATACGGCCCTTT+TGG 0.311202 1_1:-79350344 Msa0046930:CDS
ATGGCTCTCTCTCAAGGTTT+TGG 0.316832 1_1:+79351433 None:intergenic
ATTGAAGCTGCTAGGATTAA+TGG 0.333537 1_1:-79351096 Msa0046930:CDS
CATCGACAGACAAACAAATA+TGG 0.338177 1_1:-79347961 Msa0046930:three_prime_UTR
TTGCGCAGAATGGGAAGTTC+TGG 0.340402 1_1:-79351483 Msa0046930:intron
CGAAGTGAACCTAGTTGAAC+AGG 0.343532 1_1:+79348297 None:intergenic
TTCAATCTTGCTGCTGATAT+GGG 0.352299 1_1:-79351189 Msa0046930:CDS
GATTGACTAAATCAGACTTC+CGG 0.353153 1_1:-79349565 Msa0046930:CDS
CTTTCACTCCTCTCTTCATC+AGG 0.354824 1_1:-79351852 Msa0046930:intron
AATACCTTCAACTTCATTGT+TGG 0.357453 1_1:+79349374 None:intergenic
TTCCGGGAGCCAGTGAATAT+TGG 0.369817 1_1:-79349548 Msa0046930:CDS
TTCCAGCCACAAGATGCATA+TGG 0.370660 1_1:-79350446 Msa0046930:intron
ATTGACTAAATCAGACTTCC+GGG 0.372161 1_1:-79349564 Msa0046930:CDS
AAGACGAATTGAGATTTGAT+TGG 0.376922 1_1:+79351872 None:intergenic
ACTTAAACGTTTCAAGTGAA+TGG 0.390110 1_1:-79348225 Msa0046930:three_prime_UTR
GTTCCATCTTGTTGATCTTA+GGG 0.392044 1_1:-79351256 Msa0046930:CDS
ATTACATTATTGCTTCTGAT+TGG 0.392690 1_1:-79351320 Msa0046930:CDS
ATACATAATGACAGAATGAT+TGG 0.394363 1_1:+79351146 None:intergenic
CAAAAGGGCCGTATATGTTA+TGG 0.395238 1_1:+79350345 None:intergenic
ACCTTGAGAGAGAGCCATAT+TGG 0.402395 1_1:-79351428 Msa0046930:CDS
TTTCCAACTGTTTGAATTCA+GGG 0.404484 1_1:+79350604 None:intergenic
CTGTGGAAGTAAGTGTCTTT+CGG 0.410596 1_1:+79350121 None:intergenic
GGGCGGTTCCATAACATATA+CGG 0.411031 1_1:-79350353 Msa0046930:CDS
TGCTGCTGATATGGGTGGGA+TGG 0.411073 1_1:-79351181 Msa0046930:CDS
ATAGTTAATAAGTTATCTTA+AGG 0.415728 1_1:-79348164 Msa0046930:three_prime_UTR
GACCAACAACAAACCTCAGC+AGG 0.427378 1_1:+79350549 None:intergenic
AGACGAATTGAGATTTGATT+GGG 0.432903 1_1:+79351873 None:intergenic
GCCAATATGGCTCTCTCTCA+AGG 0.433604 1_1:+79351427 None:intergenic
AGAATTTCCATTACTGGTGC+TGG 0.433626 1_1:-79351390 Msa0046930:CDS
CGACATCCTTAGTAACTTTG+AGG 0.437723 1_1:+79351220 None:intergenic
TTGCGGCCACGAACACCCTC+TGG 0.442633 1_1:+79349437 None:intergenic
AGTTCTGGAACAAACGACTA+TGG 0.445353 1_1:-79351468 Msa0046930:CDS
ATACCCATCCAACACATTCC+TGG 0.445847 1_1:-79349461 Msa0046930:CDS
TGCCTGTTTGAGGCAGTACT+TGG 0.446490 1_1:-79348101 Msa0046930:three_prime_UTR
TTCATTGACGAGTGTGTTGA+AGG 0.448729 1_1:-79350051 Msa0046930:CDS
TTGGAATTGAGTGCCGCATT+GGG 0.450298 1_1:-79350373 Msa0046930:CDS
TCCAGCCACAAGATGCATAT+GGG 0.456498 1_1:-79350445 Msa0046930:intron
CAAACAAATATGGACAGAAA+AGG 0.458430 1_1:-79347951 Msa0046930:three_prime_UTR
CTAGGATTAATGGTGTTAAG+AGG 0.463596 1_1:-79351086 Msa0046930:intron
CACAGATAAATTTGAGATGT+GGG 0.465937 1_1:-79350103 Msa0046930:CDS
TGTTCAACTAGGTTCACTTC+GGG 0.469995 1_1:-79348295 Msa0046930:CDS
AACGTTTCAAGTGAATGGTT+AGG 0.473054 1_1:-79348220 Msa0046930:three_prime_UTR
AAATTTGAGATGTGGGGAGA+TGG 0.478216 1_1:-79350096 Msa0046930:CDS
GCTGGAAAGTTCATAACTAA+AGG 0.479702 1_1:-79347905 Msa0046930:three_prime_UTR
CACCAAGTACTGCCTCAAAC+AGG 0.480807 1_1:+79348099 None:intergenic
GGCTGATGCCTGGCCTGCTG+AGG 0.481849 1_1:-79350562 Msa0046930:intron
TCGTCACTTCCAATATTCAC+TGG 0.484294 1_1:+79349539 None:intergenic
GCTGCTGATATGGGTGGGAT+GGG 0.485557 1_1:-79351180 Msa0046930:CDS
CTGTTCAACTAGGTTCACTT+CGG 0.486306 1_1:-79348296 Msa0046930:CDS
AAACAAATATGGACAGAAAA+GGG 0.489146 1_1:-79347950 Msa0046930:three_prime_UTR
TTGTTCGTCGCACAGGTGGA+AGG 0.490310 1_1:-79350167 Msa0046930:intron
GAATATTGGAAGTGACGAAA+TGG 0.492369 1_1:-79349534 Msa0046930:CDS
CCTGGTCCAGAGGGTGTTCG+TGG 0.493108 1_1:-79349443 Msa0046930:CDS
ATACCTTTCCATGTACCAAA+AGG 0.493262 1_1:+79350329 None:intergenic
GCTTGAAGGAGGCTGATGCC+TGG 0.494249 1_1:-79350572 Msa0046930:CDS
CCACGAACACCCTCTGGACC+AGG 0.495598 1_1:+79349443 None:intergenic
TCGCACAGGTGGAAGGGAAA+AGG 0.497508 1_1:-79350160 Msa0046930:intron
ACAACAAACCTCAGCAGGCC+AGG 0.498680 1_1:+79350554 None:intergenic
GCCACAAGATGCATATGGGC+TGG 0.501504 1_1:-79350441 Msa0046930:CDS
GGTGTTGATGTAACATCCTA+TGG 0.504451 1_1:-79348348 Msa0046930:CDS
TTCCAATATTCACTGGCTCC+CGG 0.506890 1_1:+79349546 None:intergenic
GGCTCCAACAATGAAGTTGA+AGG 0.508928 1_1:-79349378 Msa0046930:intron
AAATCCACCAGCACCAGTAA+TGG 0.510988 1_1:+79351383 None:intergenic
AGTGTGTTGAAGGCGTGCTT+AGG 0.512253 1_1:-79350041 Msa0046930:intron
AATCAGAAGCAATAATGTAA+TGG 0.514034 1_1:+79351322 None:intergenic
TTTGGAATTGAGTGCCGCAT+TGG 0.517604 1_1:-79350374 Msa0046930:CDS
CCACAGATAAATTTGAGATG+TGG 0.517863 1_1:-79350104 Msa0046930:CDS
CTACCCTGAATTCAAACAGT+TGG 0.519009 1_1:-79350607 Msa0046930:CDS
AATCTTGCTGCTGATATGGG+TGG 0.525081 1_1:-79351186 Msa0046930:CDS
TAATGACAGAATGATTGGAT+TGG 0.525124 1_1:+79351151 None:intergenic
TAATTGCCTCAAAGTTACTA+AGG 0.532121 1_1:-79351226 Msa0046930:CDS
CTTAAGACGGCGAGCAATGT+GGG 0.532266 1_1:+79351353 None:intergenic
TCCAGCCCATATGCATCTTG+TGG 0.539478 1_1:+79350440 None:intergenic
ATTTCCATTACTGGTGCTGG+TGG 0.540705 1_1:-79351387 Msa0046930:CDS
TTATCAAAGAGAAACTTGGC+TGG 0.541202 1_1:-79349400 Msa0046930:CDS
TTCAACACACTCGTCAATGA+AGG 0.543320 1_1:+79350053 None:intergenic
GGAAACAAATGTGAGCTTGA+AGG 0.543901 1_1:-79350586 Msa0046930:CDS
CAGCTTGAGAAAGAGAAGGC+TGG 0.546482 1_1:-79348372 Msa0046930:CDS
ACTCAAGCCCCTGTTCAACT+AGG 0.554112 1_1:-79348306 Msa0046930:CDS
TACCTTTCCATGTACCAAAA+GGG 0.556614 1_1:+79350330 None:intergenic
ATCTTGCTGCTGATATGGGT+GGG 0.558451 1_1:-79351185 Msa0046930:CDS
GGCTTGAGTCGATACCACTT+TGG 0.561236 1_1:+79348320 None:intergenic
ACACTTATCAAAGAGAAACT+TGG 0.564802 1_1:-79349404 Msa0046930:CDS
GGTTCACTTCGGGCTGCAGA+TGG 0.567966 1_1:-79348285 Msa0046930:CDS
GCTGCAGATGGCAATGAATG+AGG 0.572119 1_1:-79348273 Msa0046930:exon
TCAATATGATTGAAGCTGCT+AGG 0.580779 1_1:-79351104 Msa0046930:CDS
AGCAATAATGTAATGGCCCT+CGG 0.581156 1_1:+79351329 None:intergenic
TAACCCTAAGATCAACAAGA+TGG 0.582222 1_1:+79351253 None:intergenic
TGGACCAGGAATGTGTTGGA+TGG 0.589910 1_1:+79349457 None:intergenic
TGTTCGTCGCACAGGTGGAA+GGG 0.590103 1_1:-79350166 Msa0046930:intron
GAATTGAGTGCCGCATTGGG+CGG 0.593320 1_1:-79350370 Msa0046930:CDS
TCTTAAGACGGCGAGCAATG+TGG 0.603116 1_1:+79351352 None:intergenic
TACCACTTTGGATGATCCAT+AGG 0.605260 1_1:+79348332 None:intergenic
GGACCAGGAATGTGTTGGAT+GGG 0.608980 1_1:+79349458 None:intergenic
CCACATCTCAAATTTATCTG+TGG 0.609197 1_1:+79350104 None:intergenic
CCAACACATTCCTGGTCCAG+AGG 0.619158 1_1:-79349453 Msa0046930:CDS
CAACACATTCCTGGTCCAGA+GGG 0.621739 1_1:-79349452 Msa0046930:CDS
TGCTCGCCGTCTTAAGACCG+AGG 0.623060 1_1:-79351346 Msa0046930:CDS
AGGGTAGATACAAGCACTAG+AGG 0.626056 1_1:+79350623 None:intergenic
AATGGCCCTCGGTCTTAAGA+CGG 0.626199 1_1:+79351340 None:intergenic
ACAGATAAATTTGAGATGTG+GGG 0.627741 1_1:-79350102 Msa0046930:CDS
GAGAGGAACCTGATGAAGAG+AGG 0.631269 1_1:+79351844 None:intergenic
TATCAAAGAGAAACTTGGCT+GGG 0.631951 1_1:-79349399 Msa0046930:CDS
GCTCGCCGTCTTAAGACCGA+GGG 0.637185 1_1:-79351345 Msa0046930:CDS
CCTCTGGACCAGGAATGTGT+TGG 0.642759 1_1:+79349453 None:intergenic
AGAGCAGCTTGAGAAAGAGA+AGG 0.646063 1_1:-79348376 Msa0046930:CDS
GAAGAATGAGCACATGACTG+AGG 0.648944 1_1:-79351295 Msa0046930:CDS
AGTTCATAACTAAAGGACAA+TGG 0.659790 1_1:-79347898 Msa0046930:three_prime_UTR
ACACTCGTCAATGAAGGTGA+AGG 0.659902 1_1:+79350059 None:intergenic
ATCCTATGGATCATCCAAAG+TGG 0.669201 1_1:-79348334 Msa0046930:CDS
GAAGTGAACCTAGTTGAACA+GGG 0.670267 1_1:+79348298 None:intergenic
CTTGAGAAAGAGAAGGCTGG+AGG 0.670675 1_1:-79348369 Msa0046930:CDS
AATGGTTAGCATGAATGAGA+TGG 0.673558 1_1:-79349516 Msa0046930:CDS
AACAAATGTGAGCTTGAAGG+AGG 0.696219 1_1:-79350583 Msa0046930:CDS
AAGACGGCGAGCAATGTGGG+AGG 0.698789 1_1:+79351356 None:intergenic
AAGTGAACCTAGTTGAACAG+GGG 0.722747 1_1:+79348299 None:intergenic
TGTTATGGAACCGCCCAATG+CGG 0.735755 1_1:+79350360 None:intergenic
TAAGTGTATTGTCTGAATTG+CGG 0.744809 1_1:+79349420 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTGTTTTATTTTTTGT+AGG - chr1_1:79349127-79349146 Msa0046930:intron 10.0%
!!! TTAGTTATCTCATATTTTTA+AGG - chr1_1:79348720-79348739 Msa0046930:intron 15.0%
!!! ATTAAGTTGTTTATCTAAAT+AGG - chr1_1:79348930-79348949 Msa0046930:intron 15.0%
!!! TTAAGTTGTTTATCTAAATA+GGG - chr1_1:79348931-79348950 Msa0046930:intron 15.0%
!! AATTTCAAAAAGAAAAACTA+CGG + chr1_1:79349819-79349838 None:intergenic 15.0%
!! TTGTGAATAGAAATTATTAA+TGG + chr1_1:79349897-79349916 None:intergenic 15.0%
!! TATACAAAGAAAACTAAATT+TGG - chr1_1:79350109-79350128 Msa0046930:CDS 15.0%
!! TTGCTTTATAGAATTTATTT+AGG - chr1_1:79350465-79350484 Msa0046930:intron 15.0%
!! AAGTAAAGAAGAAAAAATAA+AGG + chr1_1:79350656-79350675 None:intergenic 15.0%
!! ATAGTTAATAAGTTATCTTA+AGG - chr1_1:79351619-79351638 Msa0046930:intron 15.0%
!! CATCAATCATAAAAATAAAA+TGG + chr1_1:79351859-79351878 None:intergenic 15.0%
!!! AATTGAATTTGCAGTTTTTA+AGG + chr1_1:79348123-79348142 None:intergenic 20.0%
!!! AAGCATTATAACAAAGATTT+TGG - chr1_1:79349391-79349410 Msa0046930:CDS 20.0%
!! ATTTCAAAAAGAAAAACTAC+GGG + chr1_1:79349818-79349837 None:intergenic 20.0%
!! AATTCTATAAAGCAAAAACA+AGG + chr1_1:79350460-79350479 None:intergenic 20.0%
!! GTTTATAAGATGAAACAAAA+GGG + chr1_1:79350540-79350559 None:intergenic 20.0%
!! CTCAATTCTGATATTATTAT+AGG - chr1_1:79351353-79351372 Msa0046930:CDS 20.0%
!! ATTCTGATATTATTATAGGA+TGG - chr1_1:79351357-79351376 Msa0046930:CDS 20.0%
!! TTCTGATATTATTATAGGAT+GGG - chr1_1:79351358-79351377 Msa0046930:CDS 20.0%
!!! AGTTATCTTAAGGTTAATTT+TGG - chr1_1:79351629-79351648 Msa0046930:intron 20.0%
!!! ATTCAGACTTTAAAAAAACA+CGG + chr1_1:79351745-79351764 None:intergenic 20.0%
!!! TTTATTTTTATGATTGATGC+TGG - chr1_1:79351860-79351879 Msa0046930:five_prime_UTR 20.0%
! AATCAGAAGCAATAATGTAA+TGG + chr1_1:79348464-79348483 None:intergenic 25.0%
! ATTACATTATTGCTTCTGAT+TGG - chr1_1:79348463-79348482 Msa0046930:intron 25.0%
! ATACATAATGACAGAATGAT+TGG + chr1_1:79348640-79348659 None:intergenic 25.0%
!!! GGTCTTTGAATTGTTATTTT+TGG - chr1_1:79349253-79349272 Msa0046930:intron 25.0%
!!! ATTGTTATTTTTGGTTATGC+TGG - chr1_1:79349262-79349281 Msa0046930:intron 25.0%
!! AGCTGAATTTTAAATTTTGC+AGG - chr1_1:79349483-79349502 Msa0046930:CDS 25.0%
! AGCATACAAAACATAAATGA+CGG + chr1_1:79349534-79349553 None:intergenic 25.0%
! AATTCTATAGATGCTTAAGT+AGG - chr1_1:79349955-79349974 Msa0046930:intron 25.0%
! AATTCCAATCATTCAAGATT+TGG - chr1_1:79349988-79350007 Msa0046930:intron 25.0%
! ATTCCAATCATTCAAGATTT+GGG - chr1_1:79349989-79350008 Msa0046930:intron 25.0%
!! TTAGGTTAGTTCTTATTTCT+TGG - chr1_1:79350155-79350174 Msa0046930:CDS 25.0%
! TCTGATTTAGTCAATCTAAA+AGG + chr1_1:79350214-79350233 None:intergenic 25.0%
! GGTTTATAAGATGAAACAAA+AGG + chr1_1:79350541-79350560 None:intergenic 25.0%
! TCTCAAGAAAATATAACATC+AGG + chr1_1:79350619-79350638 None:intergenic 25.0%
! GTGGGATATATATTTATTTG+TGG + chr1_1:79350933-79350952 None:intergenic 25.0%
!! ATAATAGTTAAGAGCATATG+AGG + chr1_1:79351033-79351052 None:intergenic 25.0%
! CAAATAAGCATAGTGATATT+TGG + chr1_1:79351115-79351134 None:intergenic 25.0%
! TTTGTGCGTGTAATATATAT+TGG - chr1_1:79351219-79351238 Msa0046930:CDS 25.0%
!!! AATGCGCTTATTTTGTTTTA+TGG - chr1_1:79351659-79351678 Msa0046930:intron 25.0%
!!! TCCTTTTAAGGACTATTTAT+TGG - chr1_1:79351796-79351815 Msa0046930:intron 25.0%
!!! CCTTTTAAGGACTATTTATT+GGG - chr1_1:79351797-79351816 Msa0046930:intron 25.0%
! AAACAAATATGGACAGAAAA+GGG - chr1_1:79351833-79351852 Msa0046930:intron 25.0%
AGACGAATTGAGATTTGATT+GGG + chr1_1:79347913-79347932 None:intergenic 30.0%
AAGACGAATTGAGATTTGAT+TGG + chr1_1:79347914-79347933 None:intergenic 30.0%
ATCTTTCTTCCAATTTGTGT+CGG - chr1_1:79348080-79348099 Msa0046930:three_prime_UTR 30.0%
!!! TTTTTTTAACCTCAGTATCC+TGG - chr1_1:79348191-79348210 Msa0046930:three_prime_UTR 30.0%
!! GAAATTCTTAGCTTTTCTGT+TGG + chr1_1:79348381-79348400 None:intergenic 30.0%
AAGCTAAGAATTTCCATTAC+TGG - chr1_1:79348387-79348406 Msa0046930:CDS 30.0%
TAATTGCCTCAAAGTTACTA+AGG - chr1_1:79348557-79348576 Msa0046930:intron 30.0%
TAATGACAGAATGATTGGAT+TGG + chr1_1:79348635-79348654 None:intergenic 30.0%
TTTCCAACTGTTTGAATTCA+GGG + chr1_1:79349182-79349201 None:intergenic 30.0%
TGGTTATTCATTTGTACACT+CGG - chr1_1:79349282-79349301 Msa0046930:intron 30.0%
! CACAGATAAATTTGAGATGT+GGG - chr1_1:79349680-79349699 Msa0046930:intron 30.0%
! ACAGATAAATTTGAGATGTG+GGG - chr1_1:79349681-79349700 Msa0046930:intron 30.0%
! GCTTTTATGAACGATGAAAA+TGG - chr1_1:79349853-79349872 Msa0046930:intron 30.0%
TTCTTTGTATACAACCACAT+AGG + chr1_1:79350100-79350119 None:intergenic 30.0%
! GCTTTCTGTATATCTGTTTT+AGG - chr1_1:79350137-79350156 Msa0046930:CDS 30.0%
TAAGTGTATTGTCTGAATTG+CGG + chr1_1:79350366-79350385 None:intergenic 30.0%
ACACTTATCAAAGAGAAACT+TGG - chr1_1:79350379-79350398 Msa0046930:CDS 30.0%
AATACCTTCAACTTCATTGT+TGG + chr1_1:79350412-79350431 None:intergenic 30.0%
TCCATTAGTTCAGTTTATTG+TGG - chr1_1:79350497-79350516 Msa0046930:intron 30.0%
TCCACAATAAACTGAACTAA+TGG + chr1_1:79350501-79350520 None:intergenic 30.0%
GAAAATGATCAAATATGGCA+GGG + chr1_1:79350562-79350581 None:intergenic 30.0%
TGAGGGAAAATGATCAAATA+TGG + chr1_1:79350567-79350586 None:intergenic 30.0%
ATTCTCACTTAATACACAGT+GGG + chr1_1:79350951-79350970 None:intergenic 30.0%
ATCATGTATTGCAGAACAAT+TGG - chr1_1:79351156-79351175 Msa0046930:CDS 30.0%
TCATGTATTGCAGAACAATT+GGG - chr1_1:79351157-79351176 Msa0046930:CDS 30.0%
! GGCTTAGAATTACATACTTT+TGG - chr1_1:79351379-79351398 Msa0046930:CDS 30.0%
! ACTTAAACGTTTCAAGTGAA+TGG - chr1_1:79351558-79351577 Msa0046930:intron 30.0%
!!! TGCTATTTTGAAGAGAACTT+TGG - chr1_1:79351594-79351613 Msa0046930:intron 30.0%
!! AAGTCGTTTTCTTCCTTTTA+AGG - chr1_1:79351784-79351803 Msa0046930:intron 30.0%
CCCAATAAATAGTCCTTAAA+AGG + chr1_1:79351800-79351819 None:intergenic 30.0%
CAAACAAATATGGACAGAAA+AGG - chr1_1:79351832-79351851 Msa0046930:intron 30.0%
AGTTCATAACTAAAGGACAA+TGG - chr1_1:79351885-79351904 Msa0046930:five_prime_UTR 30.0%
ACAAGAATGAGAATTGAGAG+AGG + chr1_1:79347959-79347978 None:intergenic 35.0%
TGATTCATATTTGCGCAGAA+TGG - chr1_1:79348290-79348309 Msa0046930:CDS 35.0%
GATTCATATTTGCGCAGAAT+GGG - chr1_1:79348291-79348310 Msa0046930:CDS 35.0%
AGTTCCATCTTGTTGATCTT+AGG - chr1_1:79348526-79348545 Msa0046930:intron 35.0%
GTTCCATCTTGTTGATCTTA+GGG - chr1_1:79348527-79348546 Msa0046930:intron 35.0%
TAACCCTAAGATCAACAAGA+TGG + chr1_1:79348533-79348552 None:intergenic 35.0%
TCTTGTTGATCTTAGGGTTA+TGG - chr1_1:79348533-79348552 Msa0046930:intron 35.0%
TTTCAATCTTGCTGCTGATA+TGG - chr1_1:79348593-79348612 Msa0046930:intron 35.0%
TTCAATCTTGCTGCTGATAT+GGG - chr1_1:79348594-79348613 Msa0046930:intron 35.0%
TCAATATGATTGAAGCTGCT+AGG - chr1_1:79348679-79348698 Msa0046930:intron 35.0%
ATTGAAGCTGCTAGGATTAA+TGG - chr1_1:79348687-79348706 Msa0046930:intron 35.0%
! CTAGGATTAATGGTGTTAAG+AGG - chr1_1:79348697-79348716 Msa0046930:intron 35.0%
AGCAGTACAAATGTTTGTGT+TGG + chr1_1:79348769-79348788 None:intergenic 35.0%
AGTCGTATGAGAGAACATTA+TGG - chr1_1:79348958-79348977 Msa0046930:intron 35.0%
TGTCGATGAGTAAACATATG+TGG - chr1_1:79349056-79349075 Msa0046930:intron 35.0%
ATGAGTAAACATATGTGGTG+TGG - chr1_1:79349061-79349080 Msa0046930:intron 35.0%
GTTTCCAACTGTTTGAATTC+AGG + chr1_1:79349183-79349202 None:intergenic 35.0%
GGTTATTCATTTGTACACTC+GGG - chr1_1:79349283-79349302 Msa0046930:intron 35.0%
TACCTTTCCATGTACCAAAA+GGG + chr1_1:79349456-79349475 None:intergenic 35.0%
ATACCTTTCCATGTACCAAA+AGG + chr1_1:79349457-79349476 None:intergenic 35.0%
CCACATCTCAAATTTATCTG+TGG + chr1_1:79349682-79349701 None:intergenic 35.0%
! CCACAGATAAATTTGAGATG+TGG - chr1_1:79349679-79349698 Msa0046930:intron 35.0%
AAGCCCAAATCTTGAATGAT+TGG + chr1_1:79349995-79350014 None:intergenic 35.0%
GATTGACTAAATCAGACTTC+CGG - chr1_1:79350218-79350237 Msa0046930:intron 35.0%
ATTGACTAAATCAGACTTCC+GGG - chr1_1:79350219-79350238 Msa0046930:intron 35.0%
GAATATTGGAAGTGACGAAA+TGG - chr1_1:79350249-79350268 Msa0046930:intron 35.0%
AATGGTTAGCATGAATGAGA+TGG - chr1_1:79350267-79350286 Msa0046930:intron 35.0%
TTATCAAAGAGAAACTTGGC+TGG - chr1_1:79350383-79350402 Msa0046930:CDS 35.0%
TATCAAAGAGAAACTTGGCT+GGG - chr1_1:79350384-79350403 Msa0046930:CDS 35.0%
GGAAAATGATCAAATATGGC+AGG + chr1_1:79350563-79350582 None:intergenic 35.0%
TTCCCTCAAGAAAAGAGTAA+CGG - chr1_1:79350579-79350598 Msa0046930:CDS 35.0%
! TTCCGTTACTCTTTTCTTGA+GGG + chr1_1:79350584-79350603 None:intergenic 35.0%
! ATTCCGTTACTCTTTTCTTG+AGG + chr1_1:79350585-79350604 None:intergenic 35.0%
TTTGACATGTGAATCAGTGT+TGG + chr1_1:79350792-79350811 None:intergenic 35.0%
!! ATTAGCCTTAGACATGACTT+CGG - chr1_1:79350859-79350878 Msa0046930:intron 35.0%
CATTCTCACTTAATACACAG+TGG + chr1_1:79350952-79350971 None:intergenic 35.0%
GTGTATTAAGTGAGAATGCA+AGG - chr1_1:79350954-79350973 Msa0046930:intron 35.0%
TATTAAGTGAGAATGCAAGG+AGG - chr1_1:79350957-79350976 Msa0046930:intron 35.0%
!!! GTTAGTTTTGACAGATCATG+TGG + chr1_1:79351009-79351028 None:intergenic 35.0%
! TTTTCCATAATCGACAACAC+TGG + chr1_1:79351081-79351100 None:intergenic 35.0%
AGAATACAGACCCATTAACA+CGG + chr1_1:79351266-79351285 None:intergenic 35.0%
! AACGTTTCAAGTGAATGGTT+AGG - chr1_1:79351563-79351582 Msa0046930:intron 35.0%
CATCGACAGACAAACAAATA+TGG - chr1_1:79351822-79351841 Msa0046930:intron 35.0%
GCTGGAAAGTTCATAACTAA+AGG - chr1_1:79351878-79351897 Msa0046930:five_prime_UTR 35.0%
CAGTACTATGTCATTAGACC+AGG + chr1_1:79348212-79348231 None:intergenic 40.0%
!! AGTTCTGGAACAAACGACTA+TGG - chr1_1:79348315-79348334 Msa0046930:CDS 40.0%
! AGCTTTTCTGTTGGCCAATA+TGG + chr1_1:79348372-79348391 None:intergenic 40.0%
AGAATTTCCATTACTGGTGC+TGG - chr1_1:79348393-79348412 Msa0046930:CDS 40.0%
AGCAATAATGTAATGGCCCT+CGG + chr1_1:79348457-79348476 None:intergenic 40.0%
CGACATCCTTAGTAACTTTG+AGG + chr1_1:79348566-79348585 None:intergenic 40.0%
TTTGAGAGAGCTTACGGATA+TGG - chr1_1:79348790-79348809 Msa0046930:intron 40.0%
ATGTATCTTACCCCACTTAG+TGG - chr1_1:79348994-79349013 Msa0046930:intron 40.0%
TGTATCTTACCCCACTTAGT+GGG - chr1_1:79348995-79349014 Msa0046930:intron 40.0%
! AAGCTTTATCCCACTAAGTG+GGG + chr1_1:79349007-79349026 None:intergenic 40.0%
! CAAGCTTTATCCCACTAAGT+GGG + chr1_1:79349008-79349027 None:intergenic 40.0%
TAAACATATGTGGTGTGGAG+TGG - chr1_1:79349066-79349085 Msa0046930:intron 40.0%
TGGAGTGGTGTCTATTTCAA+CGG - chr1_1:79349081-79349100 Msa0046930:intron 40.0%
CTACCCTGAATTCAAACAGT+TGG - chr1_1:79349176-79349195 Msa0046930:intron 40.0%
GGAAACAAATGTGAGCTTGA+AGG - chr1_1:79349197-79349216 Msa0046930:intron 40.0%
AACAAATGTGAGCTTGAAGG+AGG - chr1_1:79349200-79349219 Msa0046930:intron 40.0%
TTCATTTGTACACTCGGGTT+AGG - chr1_1:79349288-79349307 Msa0046930:intron 40.0%
CAAAAGGGCCGTATATGTTA+TGG + chr1_1:79349441-79349460 None:intergenic 40.0%
! CATAACATATACGGCCCTTT+TGG - chr1_1:79349439-79349458 Msa0046930:CDS 40.0%
CTGTGGAAGTAAGTGTCTTT+CGG + chr1_1:79349665-79349684 None:intergenic 40.0%
! AAATTTGAGATGTGGGGAGA+TGG - chr1_1:79349687-79349706 Msa0046930:intron 40.0%
TTCAACACACTCGTCAATGA+AGG + chr1_1:79349733-79349752 None:intergenic 40.0%
TTCATTGACGAGTGTGTTGA+AGG - chr1_1:79349732-79349751 Msa0046930:intron 40.0%
!! CAGGTCTTAAGTTTTGTGAG+AGG + chr1_1:79350077-79350096 None:intergenic 40.0%
AAACTTAAGACCTGCCTATG+TGG - chr1_1:79350083-79350102 Msa0046930:CDS 40.0%
TTGTATACAACCACATAGGC+AGG + chr1_1:79350096-79350115 None:intergenic 40.0%
TCGTCACTTCCAATATTCAC+TGG + chr1_1:79350247-79350266 None:intergenic 40.0%
CACCAACACTTTCCTTCATA+AGG - chr1_1:79350744-79350763 Msa0046930:intron 40.0%
! CACCTTATGAAGGAAAGTGT+TGG + chr1_1:79350749-79350768 None:intergenic 40.0%
! TCATGTCTAAGGCTAATCGA+AGG + chr1_1:79350856-79350875 None:intergenic 40.0%
GGAGGTGAGTTAGTTAATCT+TGG - chr1_1:79350975-79350994 Msa0046930:intron 40.0%
TGACAGATCATGTGGTTGTA+TGG + chr1_1:79351001-79351020 None:intergenic 40.0%
! TAGACCAGTGTTGTCGATTA+TGG - chr1_1:79351074-79351093 Msa0046930:intron 40.0%
ATTCGTTGTCTGTGCTTCAT+TGG - chr1_1:79351293-79351312 Msa0046930:CDS 40.0%
!! GGTGTTGATGTAACATCCTA+TGG - chr1_1:79351435-79351454 Msa0046930:CDS 40.0%
ATCCTATGGATCATCCAAAG+TGG - chr1_1:79351449-79351468 Msa0046930:CDS 40.0%
TACCACTTTGGATGATCCAT+AGG + chr1_1:79351454-79351473 None:intergenic 40.0%
AAGTGAACCTAGTTGAACAG+GGG + chr1_1:79351487-79351506 None:intergenic 40.0%
GAAGTGAACCTAGTTGAACA+GGG + chr1_1:79351488-79351507 None:intergenic 40.0%
CTGTTCAACTAGGTTCACTT+CGG - chr1_1:79351487-79351506 Msa0046930:intron 40.0%
TGTTCAACTAGGTTCACTTC+GGG - chr1_1:79351488-79351507 Msa0046930:intron 40.0%
! TGTTTTATGGTGCCTGTTTG+AGG - chr1_1:79351672-79351691 Msa0046930:intron 40.0%
CTTTCACTCCTCTCTTCATC+AGG - chr1_1:79347931-79347950 Msa0046930:three_prime_UTR 45.0%
GAATGCGAACCGACACAAAT+TGG + chr1_1:79348092-79348111 None:intergenic 45.0%
GTCATTAGACCAGGATACTG+AGG + chr1_1:79348203-79348222 None:intergenic 45.0%
! ATGGCTCTCTCTCAAGGTTT+TGG + chr1_1:79348353-79348372 None:intergenic 45.0%
ACCTTGAGAGAGAGCCATAT+TGG - chr1_1:79348355-79348374 Msa0046930:CDS 45.0%
! ATTTCCATTACTGGTGCTGG+TGG - chr1_1:79348396-79348415 Msa0046930:CDS 45.0%
AAATCCACCAGCACCAGTAA+TGG + chr1_1:79348403-79348422 None:intergenic 45.0%
GAAGAATGAGCACATGACTG+AGG - chr1_1:79348488-79348507 Msa0046930:intron 45.0%
AATCTTGCTGCTGATATGGG+TGG - chr1_1:79348597-79348616 Msa0046930:intron 45.0%
ATCTTGCTGCTGATATGGGT+GGG - chr1_1:79348598-79348617 Msa0046930:intron 45.0%
! CTGCTGTTTGAGAGAGCTTA+CGG - chr1_1:79348784-79348803 Msa0046930:intron 45.0%
! CCAAGCTTTATCCCACTAAG+TGG + chr1_1:79349009-79349028 None:intergenic 45.0%
CCACTTAGTGGGATAAAGCT+TGG - chr1_1:79349006-79349025 Msa0046930:intron 45.0%
AGGGTAGATACAAGCACTAG+AGG + chr1_1:79349163-79349182 None:intergenic 45.0%
TTCCAGCCACAAGATGCATA+TGG - chr1_1:79349337-79349356 Msa0046930:intron 45.0%
TCCAGCCACAAGATGCATAT+GGG - chr1_1:79349338-79349357 Msa0046930:intron 45.0%
! TTTGGAATTGAGTGCCGCAT+TGG - chr1_1:79349409-79349428 Msa0046930:CDS 45.0%
! TTGGAATTGAGTGCCGCATT+GGG - chr1_1:79349410-79349429 Msa0046930:CDS 45.0%
GGGCGGTTCCATAACATATA+CGG - chr1_1:79349430-79349449 Msa0046930:CDS 45.0%
! TATACGGCCCTTTTGGTACA+TGG - chr1_1:79349446-79349465 Msa0046930:CDS 45.0%
ACACTCGTCAATGAAGGTGA+AGG + chr1_1:79349727-79349746 None:intergenic 45.0%
CAATAGACACGAGATCAGCA+TGG + chr1_1:79349773-79349792 None:intergenic 45.0%
!! TTCCAATATTCACTGGCTCC+CGG + chr1_1:79350240-79350259 None:intergenic 45.0%
ATACCCATCCAACACATTCC+TGG - chr1_1:79350322-79350341 Msa0046930:intron 45.0%
GGCTCCAACAATGAAGTTGA+AGG - chr1_1:79350405-79350424 Msa0046930:CDS 45.0%
! GACAGGTTGACACCTTATGA+AGG + chr1_1:79350759-79350778 None:intergenic 45.0%
GTGTTGGAAATGTGTCTGAC+AGG + chr1_1:79350776-79350795 None:intergenic 45.0%
ACATAGCTGACACTCGAGTT+AGG - chr1_1:79350889-79350908 Msa0046930:intron 45.0%
CTCGAGTTAGGTCTGATAGA+TGG - chr1_1:79350901-79350920 Msa0046930:intron 45.0%
CACGGACGGTGTCTAAATAA+AGG + chr1_1:79351248-79351267 None:intergenic 45.0%
TTAGACACCGTCCGTGTTAA+TGG - chr1_1:79351252-79351271 Msa0046930:CDS 45.0%
TAGACACCGTCCGTGTTAAT+GGG - chr1_1:79351253-79351272 Msa0046930:CDS 45.0%
TACAGACCCATTAACACGGA+CGG + chr1_1:79351262-79351281 None:intergenic 45.0%
AGAGCAGCTTGAGAAAGAGA+AGG - chr1_1:79351407-79351426 Msa0046930:CDS 45.0%
CGAAGTGAACCTAGTTGAAC+AGG + chr1_1:79351489-79351508 None:intergenic 45.0%
GAGAGGAACCTGATGAAGAG+AGG + chr1_1:79347942-79347961 None:intergenic 50.0%
AAGCACACAACACACGCTAG+TGG + chr1_1:79348248-79348267 None:intergenic 50.0%
TTGCGCAGAATGGGAAGTTC+TGG - chr1_1:79348300-79348319 Msa0046930:CDS 50.0%
GCCAATATGGCTCTCTCTCA+AGG + chr1_1:79348359-79348378 None:intergenic 50.0%
CTTAAGACGGCGAGCAATGT+GGG + chr1_1:79348433-79348452 None:intergenic 50.0%
TCTTAAGACGGCGAGCAATG+TGG + chr1_1:79348434-79348453 None:intergenic 50.0%
AATGGCCCTCGGTCTTAAGA+CGG + chr1_1:79348446-79348465 None:intergenic 50.0%
GACCAACAACAAACCTCAGC+AGG + chr1_1:79349237-79349256 None:intergenic 50.0%
TCCAGCCCATATGCATCTTG+TGG + chr1_1:79349346-79349365 None:intergenic 50.0%
TGTTATGGAACCGCCCAATG+CGG + chr1_1:79349426-79349445 None:intergenic 50.0%
! GGCCCTTTTGGTACATGGAA+AGG - chr1_1:79349451-79349470 Msa0046930:CDS 50.0%
!! TTTGTTGTTCGTCGCACAGG+TGG - chr1_1:79349612-79349631 Msa0046930:intron 50.0%
GTCTTTCGGCAAAAAGCAGC+AGG + chr1_1:79349651-79349670 None:intergenic 50.0%
! AGTGTGTTGAAGGCGTGCTT+AGG - chr1_1:79349742-79349761 Msa0046930:intron 50.0%
TTCCGGGAGCCAGTGAATAT+TGG - chr1_1:79350235-79350254 Msa0046930:intron 50.0%
GGACCAGGAATGTGTTGGAT+GGG + chr1_1:79350328-79350347 None:intergenic 50.0%
TGGACCAGGAATGTGTTGGA+TGG + chr1_1:79350329-79350348 None:intergenic 50.0%
CAACACATTCCTGGTCCAGA+GGG - chr1_1:79350331-79350350 Msa0046930:intron 50.0%
CCAAGCCGAAGTCATGTCTA+AGG + chr1_1:79350867-79350886 None:intergenic 50.0%
CCTTAGACATGACTTCGGCT+TGG - chr1_1:79350864-79350883 Msa0046930:intron 50.0%
CAGCTTGAGAAAGAGAAGGC+TGG - chr1_1:79351411-79351430 Msa0046930:CDS 50.0%
CTTGAGAAAGAGAAGGCTGG+AGG - chr1_1:79351414-79351433 Msa0046930:CDS 50.0%
GGCTTGAGTCGATACCACTT+TGG + chr1_1:79351466-79351485 None:intergenic 50.0%
ACTCAAGCCCCTGTTCAACT+AGG - chr1_1:79351477-79351496 Msa0046930:CDS 50.0%
GCTGCAGATGGCAATGAATG+AGG - chr1_1:79351510-79351529 Msa0046930:intron 50.0%
! TGCCTGTTTGAGGCAGTACT+TGG - chr1_1:79351682-79351701 Msa0046930:intron 50.0%
! CACCAAGTACTGCCTCAAAC+AGG + chr1_1:79351687-79351706 None:intergenic 50.0%
! CAACACACGCTAGTGGACGT+GGG + chr1_1:79348241-79348260 None:intergenic 55.0%
! ACAACACACGCTAGTGGACG+TGG + chr1_1:79348242-79348261 None:intergenic 55.0%
TGCTGCTGATATGGGTGGGA+TGG - chr1_1:79348602-79348621 Msa0046930:intron 55.0%
GCTGCTGATATGGGTGGGAT+GGG - chr1_1:79348603-79348622 Msa0046930:intron 55.0%
ACAACAAACCTCAGCAGGCC+AGG + chr1_1:79349232-79349251 None:intergenic 55.0%
!! GGCCTGCTGAGGTTTGTTGT+TGG - chr1_1:79349232-79349251 Msa0046930:intron 55.0%
GCCCATATGCATCTTGTGGC+TGG + chr1_1:79349342-79349361 None:intergenic 55.0%
GCCACAAGATGCATATGGGC+TGG - chr1_1:79349342-79349361 Msa0046930:intron 55.0%
! GAATTGAGTGCCGCATTGGG+CGG - chr1_1:79349413-79349432 Msa0046930:CDS 55.0%
!! CGCTTTGTTGTTCGTCGCAC+AGG - chr1_1:79349609-79349628 Msa0046930:intron 55.0%
TTGTTCGTCGCACAGGTGGA+AGG - chr1_1:79349616-79349635 Msa0046930:intron 55.0%
TGTTCGTCGCACAGGTGGAA+GGG - chr1_1:79349617-79349636 Msa0046930:intron 55.0%
TCGCACAGGTGGAAGGGAAA+AGG - chr1_1:79349623-79349642 Msa0046930:intron 55.0%
CCTCTGGACCAGGAATGTGT+TGG + chr1_1:79350333-79350352 None:intergenic 55.0%
CCAACACATTCCTGGTCCAG+AGG - chr1_1:79350330-79350349 Msa0046930:intron 55.0%
! GACACGAGGGCACATGGGAT+GGG + chr1_1:79348036-79348055 None:intergenic 60.0%
GATACGACATACCCCCCACG+AGG + chr1_1:79348063-79348082 None:intergenic 60.0%
! CACGCTAGTGGACGTGGGAT+TGG + chr1_1:79348236-79348255 None:intergenic 60.0%
AAGACGGCGAGCAATGTGGG+AGG + chr1_1:79348430-79348449 None:intergenic 60.0%
TGCTCGCCGTCTTAAGACCG+AGG - chr1_1:79348437-79348456 Msa0046930:intron 60.0%
GCTCGCCGTCTTAAGACCGA+GGG - chr1_1:79348438-79348457 Msa0046930:intron 60.0%
GCTTGAAGGAGGCTGATGCC+TGG - chr1_1:79349211-79349230 Msa0046930:intron 60.0%
GGTTCACTTCGGGCTGCAGA+TGG - chr1_1:79351498-79351517 Msa0046930:intron 60.0%
! CGACACGAGGGCACATGGGA+TGG + chr1_1:79348037-79348056 None:intergenic 65.0%
TCCCATGTGCCCTCGTGTCG+TGG - chr1_1:79348037-79348056 Msa0046930:three_prime_UTR 65.0%
! GCCACGACACGAGGGCACAT+GGG + chr1_1:79348041-79348060 None:intergenic 65.0%
CCACGAACACCCTCTGGACC+AGG + chr1_1:79350343-79350362 None:intergenic 65.0%
!! CCTGGTCCAGAGGGTGTTCG+TGG - chr1_1:79350340-79350359 Msa0046930:CDS 65.0%
TTGCGGCCACGAACACCCTC+TGG + chr1_1:79350349-79350368 None:intergenic 65.0%
! GGCCACGACACGAGGGCACA+TGG + chr1_1:79348042-79348061 None:intergenic 70.0%
CCCACGAGGCCACGACACGA+GGG + chr1_1:79348049-79348068 None:intergenic 70.0%
CCCTCGTGTCGTGGCCTCGT+GGG - chr1_1:79348046-79348065 Msa0046930:three_prime_UTR 70.0%
CCTCGTGTCGTGGCCTCGTG+GGG - chr1_1:79348047-79348066 Msa0046930:three_prime_UTR 70.0%
CTCGTGTCGTGGCCTCGTGG+GGG - chr1_1:79348048-79348067 Msa0046930:three_prime_UTR 70.0%
TCGTGTCGTGGCCTCGTGGG+GGG - chr1_1:79348049-79348068 Msa0046930:three_prime_UTR 70.0%
GGCTGATGCCTGGCCTGCTG+AGG - chr1_1:79349221-79349240 Msa0046930:intron 70.0%
GCCCTCGTGTCGTGGCCTCG+TGG - chr1_1:79348045-79348064 Msa0046930:three_prime_UTR 75.0%
CCCCACGAGGCCACGACACG+AGG + chr1_1:79348050-79348069 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 79347884 79351921 79347884 ID=Msa0046930;Name=Msa0046930
chr1_1 mRNA 79347884 79351921 79347884 ID=Msa0046930-mRNA-1;Parent=Msa0046930;Name=Msa0046930-mRNA-1;_AED=0.06;_eAED=0.06;_QI=70|1|1|1|0.83|0.71|7|391|376
chr1_1 exon 79347884 79348430 79347884 ID=Msa0046930-mRNA-1:exon:27379;Parent=Msa0046930-mRNA-1
chr1_1 exon 79349379 79349586 79349379 ID=Msa0046930-mRNA-1:exon:27378;Parent=Msa0046930-mRNA-1
chr1_1 exon 79350042 79350174 79350042 ID=Msa0046930-mRNA-1:exon:27377;Parent=Msa0046930-mRNA-1
chr1_1 exon 79350333 79350462 79350333 ID=Msa0046930-mRNA-1:exon:27376;Parent=Msa0046930-mRNA-1
chr1_1 exon 79350563 79350656 79350563 ID=Msa0046930-mRNA-1:exon:27375;Parent=Msa0046930-mRNA-1
chr1_1 exon 79351087 79351497 79351087 ID=Msa0046930-mRNA-1:exon:27374;Parent=Msa0046930-mRNA-1
chr1_1 exon 79351853 79351921 79351853 ID=Msa0046930-mRNA-1:exon:27373;Parent=Msa0046930-mRNA-1
chr1_1 five_prime_UTR 79351853 79351921 79351853 ID=Msa0046930-mRNA-1:five_prime_utr;Parent=Msa0046930-mRNA-1
chr1_1 five_prime_UTR 79351497 79351497 79351497 ID=Msa0046930-mRNA-1:five_prime_utr;Parent=Msa0046930-mRNA-1
chr1_1 CDS 79351087 79351496 79351087 ID=Msa0046930-mRNA-1:cds;Parent=Msa0046930-mRNA-1
chr1_1 CDS 79350563 79350656 79350563 ID=Msa0046930-mRNA-1:cds;Parent=Msa0046930-mRNA-1
chr1_1 CDS 79350333 79350462 79350333 ID=Msa0046930-mRNA-1:cds;Parent=Msa0046930-mRNA-1
chr1_1 CDS 79350042 79350174 79350042 ID=Msa0046930-mRNA-1:cds;Parent=Msa0046930-mRNA-1
chr1_1 CDS 79349379 79349586 79349379 ID=Msa0046930-mRNA-1:cds;Parent=Msa0046930-mRNA-1
chr1_1 CDS 79348275 79348430 79348275 ID=Msa0046930-mRNA-1:cds;Parent=Msa0046930-mRNA-1
chr1_1 three_prime_UTR 79347884 79348274 79347884 ID=Msa0046930-mRNA-1:three_prime_utr;Parent=Msa0046930-mRNA-1
Gene Sequence

>Msa0046930

ATGGGAAGTTCTGGAACAAACGACTATGGTGCATACACATACCAAAACCTTGAGAGAGAGCCATATTGGCCAACAGAAAAGCTAAGAATTTCCATTACTGGTGCTGGTGGATTTATTGCCTCCCACATTGCTCGCCGTCTTAAGACCGAGGGCCATTACATTATTGCTTCTGATTGGAAGAAGAATGAGCACATGACTGAGGACATGTTCTGTCATGAGTTCCATCTTGTTGATCTTAGGGTTATGGATAATTGCCTCAAAGTTACTAAGGATGTCGATCATGTTTTCAATCTTGCTGCTGATATGGGTGGGATGGGTTTTATCCAATCCAATCATTCTGTCATTATGTATAACAACACAATGATTAGCTTCAATATGATTGAAGCTGCTAGGATTAATGGTGTTAAGAGGTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTCAAACAGTTGGAAACAAATGTGAGCTTGAAGGAGGCTGATGCCTGGCCTGCTGAGCCACAAGATGCATATGGGCTGGAGAAGCTTGCAACAGAAGAGTTATGCAAGCATTATAACAAAGATTTTGGAATTGAGTGCCGCATTGGGCGGTTCCATAACATATACGGCCCTTTTGGTACATGGAAAGGTGGAAGGGAAAAGGCTCCTGCTGCTTTTTGCCGAAAGACACTTACTTCCACAGATAAATTTGAGATGTGGGGAGATGGATTACAGACACGATCCTTCACCTTCATTGACGAGTGTGTTGAAGGCGTGCTTAGATTGACTAAATCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGACGAAATGGTTAGCATGAATGAGATGGCTGAGATTGTTCTTAGCTTTGAGAACAAAAGCATACCCATCCAACACATTCCTGGTCCAGAGGGTGTTCGTGGCCGCAATTCAGACAATACACTTATCAAAGAGAAACTTGGCTGGGCTCCAACAATGAAGTTGAAGGATGGGCTTAGAATTACATACTTTTGGATTAAAGAGCAGCTTGAGAAAGAGAAGGCTGGAGGTGTTGATGTAACATCCTATGGATCATCCAAAGTGGTATCGACTCAAGCCCCTGTTCAACTAGGTTCACTTCGGGCTGCAGATGGCAATGAATGA

Protein sequence

>Msa0046930

MGSSGTNDYGAYTYQNLEREPYWPTEKLRISITGAGGFIASHIARRLKTEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKDVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGVKRFFYASSACIYPEFKQLETNVSLKEADAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKTLTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFENKSIPIQHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRITYFWIKEQLEKEKAGGVDVTSYGSSKVVSTQAPVQLGSLRAADGNE*