Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046930 | sp|A2Z7B3|GME1_ORYSI | 90.741 | 378 | 33 | 1 | 1 | 376 | 1 | 378 | 0.0 | 728 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046930 | Msa1038360 | 0.933316 | 2.261319e-95 | -8.615850e-47 |
| Msa0046930 | Msa1129400 | 0.926915 | 2.429347e-91 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046930 | MtrunA17_Chr7g0274131 | 99.204 | 377 | 2 | 1 | 1 | 376 | 1 | 377 | 0.0 | 783 |
| Msa0046930 | MtrunA17_Chr1g0190771 | 91.512 | 377 | 31 | 1 | 1 | 376 | 1 | 377 | 0.0 | 731 |
| Msa0046930 | MtrunA17_Chr4g0067461 | 28.254 | 315 | 208 | 8 | 29 | 339 | 112 | 412 | 5.61e-28 | 114 |
| Msa0046930 | MtrunA17_Chr2g0327981 | 28.115 | 313 | 201 | 9 | 28 | 330 | 38 | 336 | 1.70e-27 | 111 |
| Msa0046930 | MtrunA17_Chr4g0031131 | 27.083 | 336 | 210 | 11 | 15 | 330 | 10 | 330 | 4.24e-27 | 110 |
| Msa0046930 | MtrunA17_Chr1g0195521 | 27.378 | 347 | 212 | 12 | 28 | 348 | 118 | 450 | 5.93e-25 | 105 |
| Msa0046930 | MtrunA17_Chr7g0268991 | 25.309 | 324 | 212 | 11 | 29 | 341 | 16 | 320 | 1.19e-19 | 88.6 |
| Msa0046930 | MtrunA17_Chr1g0182091 | 28.033 | 239 | 154 | 7 | 114 | 345 | 1 | 228 | 2.24e-17 | 80.5 |
| Msa0046930 | MtrunA17_Chr5g0398811 | 24.852 | 338 | 212 | 12 | 28 | 334 | 90 | 416 | 1.87e-16 | 80.5 |
| Msa0046930 | MtrunA17_Chr4g0056941 | 24.118 | 340 | 214 | 11 | 30 | 337 | 95 | 422 | 1.26e-15 | 77.8 |
| Msa0046930 | MtrunA17_Chr4g0011281 | 25.000 | 336 | 210 | 13 | 30 | 334 | 103 | 427 | 1.43e-15 | 77.8 |
| Msa0046930 | MtrunA17_Chr7g0230291 | 24.110 | 365 | 227 | 14 | 6 | 334 | 58 | 408 | 3.34e-14 | 73.6 |
| Msa0046930 | MtrunA17_Chr3g0121661 | 23.757 | 362 | 204 | 14 | 30 | 342 | 101 | 439 | 2.43e-13 | 70.9 |
| Msa0046930 | MtrunA17_Chr4g0073351 | 23.599 | 339 | 215 | 11 | 28 | 334 | 95 | 421 | 3.11e-13 | 70.9 |
| Msa0046930 | MtrunA17_Chr1g0147841 | 26.606 | 327 | 213 | 12 | 26 | 336 | 3 | 318 | 8.56e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046930 | AT5G28840.2 | 89.655 | 377 | 38 | 1 | 1 | 376 | 1 | 377 | 0.0 | 717 |
| Msa0046930 | AT5G28840.1 | 89.655 | 377 | 38 | 1 | 1 | 376 | 1 | 377 | 0.0 | 717 |
| Msa0046930 | AT3G46440.2 | 29.582 | 311 | 195 | 9 | 28 | 328 | 29 | 325 | 2.95e-29 | 116 |
| Msa0046930 | AT3G46440.1 | 29.582 | 311 | 195 | 9 | 28 | 328 | 29 | 325 | 2.95e-29 | 116 |
| Msa0046930 | AT3G53520.1 | 29.712 | 313 | 195 | 11 | 26 | 328 | 118 | 415 | 5.44e-29 | 117 |
| Msa0046930 | AT5G59290.4 | 28.939 | 311 | 197 | 9 | 28 | 328 | 1 | 297 | 2.38e-28 | 113 |
| Msa0046930 | AT3G62830.2 | 28.525 | 305 | 205 | 8 | 28 | 328 | 119 | 414 | 2.75e-28 | 115 |
| Msa0046930 | AT3G62830.1 | 28.525 | 305 | 205 | 8 | 28 | 328 | 119 | 414 | 2.75e-28 | 115 |
| Msa0046930 | AT5G59290.1 | 28.939 | 311 | 197 | 9 | 28 | 328 | 30 | 326 | 3.16e-28 | 113 |
| Msa0046930 | AT2G47650.1 | 28.525 | 305 | 205 | 8 | 28 | 328 | 121 | 416 | 3.69e-28 | 115 |
| Msa0046930 | AT5G59290.2 | 28.939 | 311 | 197 | 9 | 28 | 328 | 45 | 341 | 4.28e-28 | 113 |
| Msa0046930 | AT5G59290.3 | 28.939 | 311 | 197 | 9 | 28 | 328 | 23 | 319 | 6.41e-28 | 112 |
| Msa0046930 | AT2G28760.1 | 27.974 | 311 | 200 | 9 | 28 | 328 | 31 | 327 | 1.65e-27 | 111 |
| Msa0046930 | AT2G28760.2 | 27.974 | 311 | 200 | 9 | 28 | 328 | 31 | 327 | 1.65e-27 | 111 |
| Msa0046930 | AT2G28760.3 | 27.974 | 311 | 200 | 9 | 28 | 328 | 31 | 327 | 1.65e-27 | 111 |
| Msa0046930 | AT2G28760.4 | 27.974 | 311 | 200 | 9 | 28 | 328 | 62 | 358 | 5.12e-27 | 110 |
| Msa0046930 | AT3G53520.2 | 29.073 | 313 | 195 | 12 | 26 | 328 | 118 | 413 | 4.29e-26 | 108 |
| Msa0046930 | AT2G47650.2 | 27.796 | 313 | 207 | 9 | 28 | 330 | 121 | 424 | 4.45e-26 | 108 |
| Msa0046930 | AT3G53520.4 | 27.219 | 338 | 194 | 13 | 26 | 328 | 118 | 438 | 4.06e-24 | 103 |
| Msa0046930 | AT1G73250.1 | 25.625 | 320 | 202 | 8 | 29 | 334 | 18 | 315 | 1.05e-21 | 95.1 |
| Msa0046930 | AT1G17890.2 | 25.000 | 324 | 217 | 8 | 29 | 343 | 13 | 319 | 1.25e-21 | 94.7 |
| Msa0046930 | AT1G17890.3 | 25.000 | 324 | 217 | 8 | 29 | 343 | 13 | 319 | 1.25e-21 | 94.7 |
| Msa0046930 | AT1G17890.1 | 25.000 | 324 | 217 | 8 | 29 | 343 | 21 | 327 | 1.28e-21 | 94.7 |
| Msa0046930 | AT2G45310.1 | 25.676 | 370 | 217 | 16 | 6 | 334 | 71 | 423 | 3.19e-18 | 86.3 |
| Msa0046930 | AT4G00110.1 | 25.223 | 337 | 208 | 13 | 30 | 334 | 93 | 417 | 7.98e-16 | 79.0 |
| Msa0046930 | AT1G02000.1 | 24.438 | 356 | 222 | 13 | 28 | 351 | 92 | 432 | 1.24e-14 | 75.5 |
| Msa0046930 | AT3G14790.1 | 26.074 | 326 | 216 | 14 | 30 | 340 | 9 | 324 | 6.03e-13 | 70.9 |
| Msa0046930 | AT3G14790.2 | 26.074 | 326 | 216 | 14 | 30 | 340 | 12 | 327 | 6.73e-13 | 70.5 |
| Msa0046930 | AT3G23820.1 | 23.823 | 361 | 221 | 15 | 28 | 348 | 112 | 458 | 1.65e-12 | 68.9 |
| Msa0046930 | AT4G30440.1 | 23.529 | 340 | 214 | 12 | 28 | 334 | 88 | 414 | 2.23e-12 | 68.6 |
| Msa0046930 | AT1G53500.1 | 25.455 | 330 | 213 | 14 | 30 | 340 | 11 | 326 | 6.18e-12 | 67.4 |
Find 127 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTATCTTAAGGTTAATTT+TGG | 0.179489 | 1_1:-79348154 | Msa0046930:three_prime_UTR |
| AAGCATTATAACAAAGATTT+TGG | 0.185817 | 1_1:-79350392 | Msa0046930:CDS |
| GTTTCCAACTGTTTGAATTC+AGG | 0.202846 | 1_1:+79350603 | None:intergenic |
| AGTTCCATCTTGTTGATCTT+AGG | 0.236542 | 1_1:-79351257 | Msa0046930:CDS |
| GGCTTAGAATTACATACTTT+TGG | 0.241436 | 1_1:-79348404 | Msa0046930:CDS |
| CCCAATAAATAGTCCTTAAA+AGG | 0.242441 | 1_1:+79347986 | None:intergenic |
| TTTCAATCTTGCTGCTGATA+TGG | 0.252773 | 1_1:-79351190 | Msa0046930:CDS |
| AAGCTAAGAATTTCCATTAC+TGG | 0.266863 | 1_1:-79351396 | Msa0046930:CDS |
| TCTTGTTGATCTTAGGGTTA+TGG | 0.275401 | 1_1:-79351250 | Msa0046930:CDS |
| CATAACATATACGGCCCTTT+TGG | 0.311202 | 1_1:-79350344 | Msa0046930:CDS |
| ATGGCTCTCTCTCAAGGTTT+TGG | 0.316832 | 1_1:+79351433 | None:intergenic |
| ATTGAAGCTGCTAGGATTAA+TGG | 0.333537 | 1_1:-79351096 | Msa0046930:CDS |
| CATCGACAGACAAACAAATA+TGG | 0.338177 | 1_1:-79347961 | Msa0046930:three_prime_UTR |
| TTGCGCAGAATGGGAAGTTC+TGG | 0.340402 | 1_1:-79351483 | Msa0046930:intron |
| CGAAGTGAACCTAGTTGAAC+AGG | 0.343532 | 1_1:+79348297 | None:intergenic |
| TTCAATCTTGCTGCTGATAT+GGG | 0.352299 | 1_1:-79351189 | Msa0046930:CDS |
| GATTGACTAAATCAGACTTC+CGG | 0.353153 | 1_1:-79349565 | Msa0046930:CDS |
| CTTTCACTCCTCTCTTCATC+AGG | 0.354824 | 1_1:-79351852 | Msa0046930:intron |
| AATACCTTCAACTTCATTGT+TGG | 0.357453 | 1_1:+79349374 | None:intergenic |
| TTCCGGGAGCCAGTGAATAT+TGG | 0.369817 | 1_1:-79349548 | Msa0046930:CDS |
| TTCCAGCCACAAGATGCATA+TGG | 0.370660 | 1_1:-79350446 | Msa0046930:intron |
| ATTGACTAAATCAGACTTCC+GGG | 0.372161 | 1_1:-79349564 | Msa0046930:CDS |
| AAGACGAATTGAGATTTGAT+TGG | 0.376922 | 1_1:+79351872 | None:intergenic |
| ACTTAAACGTTTCAAGTGAA+TGG | 0.390110 | 1_1:-79348225 | Msa0046930:three_prime_UTR |
| GTTCCATCTTGTTGATCTTA+GGG | 0.392044 | 1_1:-79351256 | Msa0046930:CDS |
| ATTACATTATTGCTTCTGAT+TGG | 0.392690 | 1_1:-79351320 | Msa0046930:CDS |
| ATACATAATGACAGAATGAT+TGG | 0.394363 | 1_1:+79351146 | None:intergenic |
| CAAAAGGGCCGTATATGTTA+TGG | 0.395238 | 1_1:+79350345 | None:intergenic |
| ACCTTGAGAGAGAGCCATAT+TGG | 0.402395 | 1_1:-79351428 | Msa0046930:CDS |
| TTTCCAACTGTTTGAATTCA+GGG | 0.404484 | 1_1:+79350604 | None:intergenic |
| CTGTGGAAGTAAGTGTCTTT+CGG | 0.410596 | 1_1:+79350121 | None:intergenic |
| GGGCGGTTCCATAACATATA+CGG | 0.411031 | 1_1:-79350353 | Msa0046930:CDS |
| TGCTGCTGATATGGGTGGGA+TGG | 0.411073 | 1_1:-79351181 | Msa0046930:CDS |
| ATAGTTAATAAGTTATCTTA+AGG | 0.415728 | 1_1:-79348164 | Msa0046930:three_prime_UTR |
| GACCAACAACAAACCTCAGC+AGG | 0.427378 | 1_1:+79350549 | None:intergenic |
| AGACGAATTGAGATTTGATT+GGG | 0.432903 | 1_1:+79351873 | None:intergenic |
| GCCAATATGGCTCTCTCTCA+AGG | 0.433604 | 1_1:+79351427 | None:intergenic |
| AGAATTTCCATTACTGGTGC+TGG | 0.433626 | 1_1:-79351390 | Msa0046930:CDS |
| CGACATCCTTAGTAACTTTG+AGG | 0.437723 | 1_1:+79351220 | None:intergenic |
| TTGCGGCCACGAACACCCTC+TGG | 0.442633 | 1_1:+79349437 | None:intergenic |
| AGTTCTGGAACAAACGACTA+TGG | 0.445353 | 1_1:-79351468 | Msa0046930:CDS |
| ATACCCATCCAACACATTCC+TGG | 0.445847 | 1_1:-79349461 | Msa0046930:CDS |
| TGCCTGTTTGAGGCAGTACT+TGG | 0.446490 | 1_1:-79348101 | Msa0046930:three_prime_UTR |
| TTCATTGACGAGTGTGTTGA+AGG | 0.448729 | 1_1:-79350051 | Msa0046930:CDS |
| TTGGAATTGAGTGCCGCATT+GGG | 0.450298 | 1_1:-79350373 | Msa0046930:CDS |
| TCCAGCCACAAGATGCATAT+GGG | 0.456498 | 1_1:-79350445 | Msa0046930:intron |
| CAAACAAATATGGACAGAAA+AGG | 0.458430 | 1_1:-79347951 | Msa0046930:three_prime_UTR |
| CTAGGATTAATGGTGTTAAG+AGG | 0.463596 | 1_1:-79351086 | Msa0046930:intron |
| CACAGATAAATTTGAGATGT+GGG | 0.465937 | 1_1:-79350103 | Msa0046930:CDS |
| TGTTCAACTAGGTTCACTTC+GGG | 0.469995 | 1_1:-79348295 | Msa0046930:CDS |
| AACGTTTCAAGTGAATGGTT+AGG | 0.473054 | 1_1:-79348220 | Msa0046930:three_prime_UTR |
| AAATTTGAGATGTGGGGAGA+TGG | 0.478216 | 1_1:-79350096 | Msa0046930:CDS |
| GCTGGAAAGTTCATAACTAA+AGG | 0.479702 | 1_1:-79347905 | Msa0046930:three_prime_UTR |
| CACCAAGTACTGCCTCAAAC+AGG | 0.480807 | 1_1:+79348099 | None:intergenic |
| GGCTGATGCCTGGCCTGCTG+AGG | 0.481849 | 1_1:-79350562 | Msa0046930:intron |
| TCGTCACTTCCAATATTCAC+TGG | 0.484294 | 1_1:+79349539 | None:intergenic |
| GCTGCTGATATGGGTGGGAT+GGG | 0.485557 | 1_1:-79351180 | Msa0046930:CDS |
| CTGTTCAACTAGGTTCACTT+CGG | 0.486306 | 1_1:-79348296 | Msa0046930:CDS |
| AAACAAATATGGACAGAAAA+GGG | 0.489146 | 1_1:-79347950 | Msa0046930:three_prime_UTR |
| TTGTTCGTCGCACAGGTGGA+AGG | 0.490310 | 1_1:-79350167 | Msa0046930:intron |
| GAATATTGGAAGTGACGAAA+TGG | 0.492369 | 1_1:-79349534 | Msa0046930:CDS |
| CCTGGTCCAGAGGGTGTTCG+TGG | 0.493108 | 1_1:-79349443 | Msa0046930:CDS |
| ATACCTTTCCATGTACCAAA+AGG | 0.493262 | 1_1:+79350329 | None:intergenic |
| GCTTGAAGGAGGCTGATGCC+TGG | 0.494249 | 1_1:-79350572 | Msa0046930:CDS |
| CCACGAACACCCTCTGGACC+AGG | 0.495598 | 1_1:+79349443 | None:intergenic |
| TCGCACAGGTGGAAGGGAAA+AGG | 0.497508 | 1_1:-79350160 | Msa0046930:intron |
| ACAACAAACCTCAGCAGGCC+AGG | 0.498680 | 1_1:+79350554 | None:intergenic |
| GCCACAAGATGCATATGGGC+TGG | 0.501504 | 1_1:-79350441 | Msa0046930:CDS |
| GGTGTTGATGTAACATCCTA+TGG | 0.504451 | 1_1:-79348348 | Msa0046930:CDS |
| TTCCAATATTCACTGGCTCC+CGG | 0.506890 | 1_1:+79349546 | None:intergenic |
| GGCTCCAACAATGAAGTTGA+AGG | 0.508928 | 1_1:-79349378 | Msa0046930:intron |
| AAATCCACCAGCACCAGTAA+TGG | 0.510988 | 1_1:+79351383 | None:intergenic |
| AGTGTGTTGAAGGCGTGCTT+AGG | 0.512253 | 1_1:-79350041 | Msa0046930:intron |
| AATCAGAAGCAATAATGTAA+TGG | 0.514034 | 1_1:+79351322 | None:intergenic |
| TTTGGAATTGAGTGCCGCAT+TGG | 0.517604 | 1_1:-79350374 | Msa0046930:CDS |
| CCACAGATAAATTTGAGATG+TGG | 0.517863 | 1_1:-79350104 | Msa0046930:CDS |
| CTACCCTGAATTCAAACAGT+TGG | 0.519009 | 1_1:-79350607 | Msa0046930:CDS |
| AATCTTGCTGCTGATATGGG+TGG | 0.525081 | 1_1:-79351186 | Msa0046930:CDS |
| TAATGACAGAATGATTGGAT+TGG | 0.525124 | 1_1:+79351151 | None:intergenic |
| TAATTGCCTCAAAGTTACTA+AGG | 0.532121 | 1_1:-79351226 | Msa0046930:CDS |
| CTTAAGACGGCGAGCAATGT+GGG | 0.532266 | 1_1:+79351353 | None:intergenic |
| TCCAGCCCATATGCATCTTG+TGG | 0.539478 | 1_1:+79350440 | None:intergenic |
| ATTTCCATTACTGGTGCTGG+TGG | 0.540705 | 1_1:-79351387 | Msa0046930:CDS |
| TTATCAAAGAGAAACTTGGC+TGG | 0.541202 | 1_1:-79349400 | Msa0046930:CDS |
| TTCAACACACTCGTCAATGA+AGG | 0.543320 | 1_1:+79350053 | None:intergenic |
| GGAAACAAATGTGAGCTTGA+AGG | 0.543901 | 1_1:-79350586 | Msa0046930:CDS |
| CAGCTTGAGAAAGAGAAGGC+TGG | 0.546482 | 1_1:-79348372 | Msa0046930:CDS |
| ACTCAAGCCCCTGTTCAACT+AGG | 0.554112 | 1_1:-79348306 | Msa0046930:CDS |
| TACCTTTCCATGTACCAAAA+GGG | 0.556614 | 1_1:+79350330 | None:intergenic |
| ATCTTGCTGCTGATATGGGT+GGG | 0.558451 | 1_1:-79351185 | Msa0046930:CDS |
| GGCTTGAGTCGATACCACTT+TGG | 0.561236 | 1_1:+79348320 | None:intergenic |
| ACACTTATCAAAGAGAAACT+TGG | 0.564802 | 1_1:-79349404 | Msa0046930:CDS |
| GGTTCACTTCGGGCTGCAGA+TGG | 0.567966 | 1_1:-79348285 | Msa0046930:CDS |
| GCTGCAGATGGCAATGAATG+AGG | 0.572119 | 1_1:-79348273 | Msa0046930:exon |
| TCAATATGATTGAAGCTGCT+AGG | 0.580779 | 1_1:-79351104 | Msa0046930:CDS |
| AGCAATAATGTAATGGCCCT+CGG | 0.581156 | 1_1:+79351329 | None:intergenic |
| TAACCCTAAGATCAACAAGA+TGG | 0.582222 | 1_1:+79351253 | None:intergenic |
| TGGACCAGGAATGTGTTGGA+TGG | 0.589910 | 1_1:+79349457 | None:intergenic |
| TGTTCGTCGCACAGGTGGAA+GGG | 0.590103 | 1_1:-79350166 | Msa0046930:intron |
| GAATTGAGTGCCGCATTGGG+CGG | 0.593320 | 1_1:-79350370 | Msa0046930:CDS |
| TCTTAAGACGGCGAGCAATG+TGG | 0.603116 | 1_1:+79351352 | None:intergenic |
| TACCACTTTGGATGATCCAT+AGG | 0.605260 | 1_1:+79348332 | None:intergenic |
| GGACCAGGAATGTGTTGGAT+GGG | 0.608980 | 1_1:+79349458 | None:intergenic |
| CCACATCTCAAATTTATCTG+TGG | 0.609197 | 1_1:+79350104 | None:intergenic |
| CCAACACATTCCTGGTCCAG+AGG | 0.619158 | 1_1:-79349453 | Msa0046930:CDS |
| CAACACATTCCTGGTCCAGA+GGG | 0.621739 | 1_1:-79349452 | Msa0046930:CDS |
| TGCTCGCCGTCTTAAGACCG+AGG | 0.623060 | 1_1:-79351346 | Msa0046930:CDS |
| AGGGTAGATACAAGCACTAG+AGG | 0.626056 | 1_1:+79350623 | None:intergenic |
| AATGGCCCTCGGTCTTAAGA+CGG | 0.626199 | 1_1:+79351340 | None:intergenic |
| ACAGATAAATTTGAGATGTG+GGG | 0.627741 | 1_1:-79350102 | Msa0046930:CDS |
| GAGAGGAACCTGATGAAGAG+AGG | 0.631269 | 1_1:+79351844 | None:intergenic |
| TATCAAAGAGAAACTTGGCT+GGG | 0.631951 | 1_1:-79349399 | Msa0046930:CDS |
| GCTCGCCGTCTTAAGACCGA+GGG | 0.637185 | 1_1:-79351345 | Msa0046930:CDS |
| CCTCTGGACCAGGAATGTGT+TGG | 0.642759 | 1_1:+79349453 | None:intergenic |
| AGAGCAGCTTGAGAAAGAGA+AGG | 0.646063 | 1_1:-79348376 | Msa0046930:CDS |
| GAAGAATGAGCACATGACTG+AGG | 0.648944 | 1_1:-79351295 | Msa0046930:CDS |
| AGTTCATAACTAAAGGACAA+TGG | 0.659790 | 1_1:-79347898 | Msa0046930:three_prime_UTR |
| ACACTCGTCAATGAAGGTGA+AGG | 0.659902 | 1_1:+79350059 | None:intergenic |
| ATCCTATGGATCATCCAAAG+TGG | 0.669201 | 1_1:-79348334 | Msa0046930:CDS |
| GAAGTGAACCTAGTTGAACA+GGG | 0.670267 | 1_1:+79348298 | None:intergenic |
| CTTGAGAAAGAGAAGGCTGG+AGG | 0.670675 | 1_1:-79348369 | Msa0046930:CDS |
| AATGGTTAGCATGAATGAGA+TGG | 0.673558 | 1_1:-79349516 | Msa0046930:CDS |
| AACAAATGTGAGCTTGAAGG+AGG | 0.696219 | 1_1:-79350583 | Msa0046930:CDS |
| AAGACGGCGAGCAATGTGGG+AGG | 0.698789 | 1_1:+79351356 | None:intergenic |
| AAGTGAACCTAGTTGAACAG+GGG | 0.722747 | 1_1:+79348299 | None:intergenic |
| TGTTATGGAACCGCCCAATG+CGG | 0.735755 | 1_1:+79350360 | None:intergenic |
| TAAGTGTATTGTCTGAATTG+CGG | 0.744809 | 1_1:+79349420 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTGTTTTATTTTTTGT+AGG | - | chr1_1:79349127-79349146 | Msa0046930:intron | 10.0% |
| !!! | TTAGTTATCTCATATTTTTA+AGG | - | chr1_1:79348720-79348739 | Msa0046930:intron | 15.0% |
| !!! | ATTAAGTTGTTTATCTAAAT+AGG | - | chr1_1:79348930-79348949 | Msa0046930:intron | 15.0% |
| !!! | TTAAGTTGTTTATCTAAATA+GGG | - | chr1_1:79348931-79348950 | Msa0046930:intron | 15.0% |
| !! | AATTTCAAAAAGAAAAACTA+CGG | + | chr1_1:79349819-79349838 | None:intergenic | 15.0% |
| !! | TTGTGAATAGAAATTATTAA+TGG | + | chr1_1:79349897-79349916 | None:intergenic | 15.0% |
| !! | TATACAAAGAAAACTAAATT+TGG | - | chr1_1:79350109-79350128 | Msa0046930:CDS | 15.0% |
| !! | TTGCTTTATAGAATTTATTT+AGG | - | chr1_1:79350465-79350484 | Msa0046930:intron | 15.0% |
| !! | AAGTAAAGAAGAAAAAATAA+AGG | + | chr1_1:79350656-79350675 | None:intergenic | 15.0% |
| !! | ATAGTTAATAAGTTATCTTA+AGG | - | chr1_1:79351619-79351638 | Msa0046930:intron | 15.0% |
| !! | CATCAATCATAAAAATAAAA+TGG | + | chr1_1:79351859-79351878 | None:intergenic | 15.0% |
| !!! | AATTGAATTTGCAGTTTTTA+AGG | + | chr1_1:79348123-79348142 | None:intergenic | 20.0% |
| !!! | AAGCATTATAACAAAGATTT+TGG | - | chr1_1:79349391-79349410 | Msa0046930:CDS | 20.0% |
| !! | ATTTCAAAAAGAAAAACTAC+GGG | + | chr1_1:79349818-79349837 | None:intergenic | 20.0% |
| !! | AATTCTATAAAGCAAAAACA+AGG | + | chr1_1:79350460-79350479 | None:intergenic | 20.0% |
| !! | GTTTATAAGATGAAACAAAA+GGG | + | chr1_1:79350540-79350559 | None:intergenic | 20.0% |
| !! | CTCAATTCTGATATTATTAT+AGG | - | chr1_1:79351353-79351372 | Msa0046930:CDS | 20.0% |
| !! | ATTCTGATATTATTATAGGA+TGG | - | chr1_1:79351357-79351376 | Msa0046930:CDS | 20.0% |
| !! | TTCTGATATTATTATAGGAT+GGG | - | chr1_1:79351358-79351377 | Msa0046930:CDS | 20.0% |
| !!! | AGTTATCTTAAGGTTAATTT+TGG | - | chr1_1:79351629-79351648 | Msa0046930:intron | 20.0% |
| !!! | ATTCAGACTTTAAAAAAACA+CGG | + | chr1_1:79351745-79351764 | None:intergenic | 20.0% |
| !!! | TTTATTTTTATGATTGATGC+TGG | - | chr1_1:79351860-79351879 | Msa0046930:five_prime_UTR | 20.0% |
| ! | AATCAGAAGCAATAATGTAA+TGG | + | chr1_1:79348464-79348483 | None:intergenic | 25.0% |
| ! | ATTACATTATTGCTTCTGAT+TGG | - | chr1_1:79348463-79348482 | Msa0046930:intron | 25.0% |
| ! | ATACATAATGACAGAATGAT+TGG | + | chr1_1:79348640-79348659 | None:intergenic | 25.0% |
| !!! | GGTCTTTGAATTGTTATTTT+TGG | - | chr1_1:79349253-79349272 | Msa0046930:intron | 25.0% |
| !!! | ATTGTTATTTTTGGTTATGC+TGG | - | chr1_1:79349262-79349281 | Msa0046930:intron | 25.0% |
| !! | AGCTGAATTTTAAATTTTGC+AGG | - | chr1_1:79349483-79349502 | Msa0046930:CDS | 25.0% |
| ! | AGCATACAAAACATAAATGA+CGG | + | chr1_1:79349534-79349553 | None:intergenic | 25.0% |
| ! | AATTCTATAGATGCTTAAGT+AGG | - | chr1_1:79349955-79349974 | Msa0046930:intron | 25.0% |
| ! | AATTCCAATCATTCAAGATT+TGG | - | chr1_1:79349988-79350007 | Msa0046930:intron | 25.0% |
| ! | ATTCCAATCATTCAAGATTT+GGG | - | chr1_1:79349989-79350008 | Msa0046930:intron | 25.0% |
| !! | TTAGGTTAGTTCTTATTTCT+TGG | - | chr1_1:79350155-79350174 | Msa0046930:CDS | 25.0% |
| ! | TCTGATTTAGTCAATCTAAA+AGG | + | chr1_1:79350214-79350233 | None:intergenic | 25.0% |
| ! | GGTTTATAAGATGAAACAAA+AGG | + | chr1_1:79350541-79350560 | None:intergenic | 25.0% |
| ! | TCTCAAGAAAATATAACATC+AGG | + | chr1_1:79350619-79350638 | None:intergenic | 25.0% |
| ! | GTGGGATATATATTTATTTG+TGG | + | chr1_1:79350933-79350952 | None:intergenic | 25.0% |
| !! | ATAATAGTTAAGAGCATATG+AGG | + | chr1_1:79351033-79351052 | None:intergenic | 25.0% |
| ! | CAAATAAGCATAGTGATATT+TGG | + | chr1_1:79351115-79351134 | None:intergenic | 25.0% |
| ! | TTTGTGCGTGTAATATATAT+TGG | - | chr1_1:79351219-79351238 | Msa0046930:CDS | 25.0% |
| !!! | AATGCGCTTATTTTGTTTTA+TGG | - | chr1_1:79351659-79351678 | Msa0046930:intron | 25.0% |
| !!! | TCCTTTTAAGGACTATTTAT+TGG | - | chr1_1:79351796-79351815 | Msa0046930:intron | 25.0% |
| !!! | CCTTTTAAGGACTATTTATT+GGG | - | chr1_1:79351797-79351816 | Msa0046930:intron | 25.0% |
| ! | AAACAAATATGGACAGAAAA+GGG | - | chr1_1:79351833-79351852 | Msa0046930:intron | 25.0% |
| AGACGAATTGAGATTTGATT+GGG | + | chr1_1:79347913-79347932 | None:intergenic | 30.0% | |
| AAGACGAATTGAGATTTGAT+TGG | + | chr1_1:79347914-79347933 | None:intergenic | 30.0% | |
| ATCTTTCTTCCAATTTGTGT+CGG | - | chr1_1:79348080-79348099 | Msa0046930:three_prime_UTR | 30.0% | |
| !!! | TTTTTTTAACCTCAGTATCC+TGG | - | chr1_1:79348191-79348210 | Msa0046930:three_prime_UTR | 30.0% |
| !! | GAAATTCTTAGCTTTTCTGT+TGG | + | chr1_1:79348381-79348400 | None:intergenic | 30.0% |
| AAGCTAAGAATTTCCATTAC+TGG | - | chr1_1:79348387-79348406 | Msa0046930:CDS | 30.0% | |
| TAATTGCCTCAAAGTTACTA+AGG | - | chr1_1:79348557-79348576 | Msa0046930:intron | 30.0% | |
| TAATGACAGAATGATTGGAT+TGG | + | chr1_1:79348635-79348654 | None:intergenic | 30.0% | |
| TTTCCAACTGTTTGAATTCA+GGG | + | chr1_1:79349182-79349201 | None:intergenic | 30.0% | |
| TGGTTATTCATTTGTACACT+CGG | - | chr1_1:79349282-79349301 | Msa0046930:intron | 30.0% | |
| ! | CACAGATAAATTTGAGATGT+GGG | - | chr1_1:79349680-79349699 | Msa0046930:intron | 30.0% |
| ! | ACAGATAAATTTGAGATGTG+GGG | - | chr1_1:79349681-79349700 | Msa0046930:intron | 30.0% |
| ! | GCTTTTATGAACGATGAAAA+TGG | - | chr1_1:79349853-79349872 | Msa0046930:intron | 30.0% |
| TTCTTTGTATACAACCACAT+AGG | + | chr1_1:79350100-79350119 | None:intergenic | 30.0% | |
| ! | GCTTTCTGTATATCTGTTTT+AGG | - | chr1_1:79350137-79350156 | Msa0046930:CDS | 30.0% |
| TAAGTGTATTGTCTGAATTG+CGG | + | chr1_1:79350366-79350385 | None:intergenic | 30.0% | |
| ACACTTATCAAAGAGAAACT+TGG | - | chr1_1:79350379-79350398 | Msa0046930:CDS | 30.0% | |
| AATACCTTCAACTTCATTGT+TGG | + | chr1_1:79350412-79350431 | None:intergenic | 30.0% | |
| TCCATTAGTTCAGTTTATTG+TGG | - | chr1_1:79350497-79350516 | Msa0046930:intron | 30.0% | |
| TCCACAATAAACTGAACTAA+TGG | + | chr1_1:79350501-79350520 | None:intergenic | 30.0% | |
| GAAAATGATCAAATATGGCA+GGG | + | chr1_1:79350562-79350581 | None:intergenic | 30.0% | |
| TGAGGGAAAATGATCAAATA+TGG | + | chr1_1:79350567-79350586 | None:intergenic | 30.0% | |
| ATTCTCACTTAATACACAGT+GGG | + | chr1_1:79350951-79350970 | None:intergenic | 30.0% | |
| ATCATGTATTGCAGAACAAT+TGG | - | chr1_1:79351156-79351175 | Msa0046930:CDS | 30.0% | |
| TCATGTATTGCAGAACAATT+GGG | - | chr1_1:79351157-79351176 | Msa0046930:CDS | 30.0% | |
| ! | GGCTTAGAATTACATACTTT+TGG | - | chr1_1:79351379-79351398 | Msa0046930:CDS | 30.0% |
| ! | ACTTAAACGTTTCAAGTGAA+TGG | - | chr1_1:79351558-79351577 | Msa0046930:intron | 30.0% |
| !!! | TGCTATTTTGAAGAGAACTT+TGG | - | chr1_1:79351594-79351613 | Msa0046930:intron | 30.0% |
| !! | AAGTCGTTTTCTTCCTTTTA+AGG | - | chr1_1:79351784-79351803 | Msa0046930:intron | 30.0% |
| CCCAATAAATAGTCCTTAAA+AGG | + | chr1_1:79351800-79351819 | None:intergenic | 30.0% | |
| CAAACAAATATGGACAGAAA+AGG | - | chr1_1:79351832-79351851 | Msa0046930:intron | 30.0% | |
| AGTTCATAACTAAAGGACAA+TGG | - | chr1_1:79351885-79351904 | Msa0046930:five_prime_UTR | 30.0% | |
| ACAAGAATGAGAATTGAGAG+AGG | + | chr1_1:79347959-79347978 | None:intergenic | 35.0% | |
| TGATTCATATTTGCGCAGAA+TGG | - | chr1_1:79348290-79348309 | Msa0046930:CDS | 35.0% | |
| GATTCATATTTGCGCAGAAT+GGG | - | chr1_1:79348291-79348310 | Msa0046930:CDS | 35.0% | |
| AGTTCCATCTTGTTGATCTT+AGG | - | chr1_1:79348526-79348545 | Msa0046930:intron | 35.0% | |
| GTTCCATCTTGTTGATCTTA+GGG | - | chr1_1:79348527-79348546 | Msa0046930:intron | 35.0% | |
| TAACCCTAAGATCAACAAGA+TGG | + | chr1_1:79348533-79348552 | None:intergenic | 35.0% | |
| TCTTGTTGATCTTAGGGTTA+TGG | - | chr1_1:79348533-79348552 | Msa0046930:intron | 35.0% | |
| TTTCAATCTTGCTGCTGATA+TGG | - | chr1_1:79348593-79348612 | Msa0046930:intron | 35.0% | |
| TTCAATCTTGCTGCTGATAT+GGG | - | chr1_1:79348594-79348613 | Msa0046930:intron | 35.0% | |
| TCAATATGATTGAAGCTGCT+AGG | - | chr1_1:79348679-79348698 | Msa0046930:intron | 35.0% | |
| ATTGAAGCTGCTAGGATTAA+TGG | - | chr1_1:79348687-79348706 | Msa0046930:intron | 35.0% | |
| ! | CTAGGATTAATGGTGTTAAG+AGG | - | chr1_1:79348697-79348716 | Msa0046930:intron | 35.0% |
| AGCAGTACAAATGTTTGTGT+TGG | + | chr1_1:79348769-79348788 | None:intergenic | 35.0% | |
| AGTCGTATGAGAGAACATTA+TGG | - | chr1_1:79348958-79348977 | Msa0046930:intron | 35.0% | |
| TGTCGATGAGTAAACATATG+TGG | - | chr1_1:79349056-79349075 | Msa0046930:intron | 35.0% | |
| ATGAGTAAACATATGTGGTG+TGG | - | chr1_1:79349061-79349080 | Msa0046930:intron | 35.0% | |
| GTTTCCAACTGTTTGAATTC+AGG | + | chr1_1:79349183-79349202 | None:intergenic | 35.0% | |
| GGTTATTCATTTGTACACTC+GGG | - | chr1_1:79349283-79349302 | Msa0046930:intron | 35.0% | |
| TACCTTTCCATGTACCAAAA+GGG | + | chr1_1:79349456-79349475 | None:intergenic | 35.0% | |
| ATACCTTTCCATGTACCAAA+AGG | + | chr1_1:79349457-79349476 | None:intergenic | 35.0% | |
| CCACATCTCAAATTTATCTG+TGG | + | chr1_1:79349682-79349701 | None:intergenic | 35.0% | |
| ! | CCACAGATAAATTTGAGATG+TGG | - | chr1_1:79349679-79349698 | Msa0046930:intron | 35.0% |
| AAGCCCAAATCTTGAATGAT+TGG | + | chr1_1:79349995-79350014 | None:intergenic | 35.0% | |
| GATTGACTAAATCAGACTTC+CGG | - | chr1_1:79350218-79350237 | Msa0046930:intron | 35.0% | |
| ATTGACTAAATCAGACTTCC+GGG | - | chr1_1:79350219-79350238 | Msa0046930:intron | 35.0% | |
| GAATATTGGAAGTGACGAAA+TGG | - | chr1_1:79350249-79350268 | Msa0046930:intron | 35.0% | |
| AATGGTTAGCATGAATGAGA+TGG | - | chr1_1:79350267-79350286 | Msa0046930:intron | 35.0% | |
| TTATCAAAGAGAAACTTGGC+TGG | - | chr1_1:79350383-79350402 | Msa0046930:CDS | 35.0% | |
| TATCAAAGAGAAACTTGGCT+GGG | - | chr1_1:79350384-79350403 | Msa0046930:CDS | 35.0% | |
| GGAAAATGATCAAATATGGC+AGG | + | chr1_1:79350563-79350582 | None:intergenic | 35.0% | |
| TTCCCTCAAGAAAAGAGTAA+CGG | - | chr1_1:79350579-79350598 | Msa0046930:CDS | 35.0% | |
| ! | TTCCGTTACTCTTTTCTTGA+GGG | + | chr1_1:79350584-79350603 | None:intergenic | 35.0% |
| ! | ATTCCGTTACTCTTTTCTTG+AGG | + | chr1_1:79350585-79350604 | None:intergenic | 35.0% |
| TTTGACATGTGAATCAGTGT+TGG | + | chr1_1:79350792-79350811 | None:intergenic | 35.0% | |
| !! | ATTAGCCTTAGACATGACTT+CGG | - | chr1_1:79350859-79350878 | Msa0046930:intron | 35.0% |
| CATTCTCACTTAATACACAG+TGG | + | chr1_1:79350952-79350971 | None:intergenic | 35.0% | |
| GTGTATTAAGTGAGAATGCA+AGG | - | chr1_1:79350954-79350973 | Msa0046930:intron | 35.0% | |
| TATTAAGTGAGAATGCAAGG+AGG | - | chr1_1:79350957-79350976 | Msa0046930:intron | 35.0% | |
| !!! | GTTAGTTTTGACAGATCATG+TGG | + | chr1_1:79351009-79351028 | None:intergenic | 35.0% |
| ! | TTTTCCATAATCGACAACAC+TGG | + | chr1_1:79351081-79351100 | None:intergenic | 35.0% |
| AGAATACAGACCCATTAACA+CGG | + | chr1_1:79351266-79351285 | None:intergenic | 35.0% | |
| ! | AACGTTTCAAGTGAATGGTT+AGG | - | chr1_1:79351563-79351582 | Msa0046930:intron | 35.0% |
| CATCGACAGACAAACAAATA+TGG | - | chr1_1:79351822-79351841 | Msa0046930:intron | 35.0% | |
| GCTGGAAAGTTCATAACTAA+AGG | - | chr1_1:79351878-79351897 | Msa0046930:five_prime_UTR | 35.0% | |
| CAGTACTATGTCATTAGACC+AGG | + | chr1_1:79348212-79348231 | None:intergenic | 40.0% | |
| !! | AGTTCTGGAACAAACGACTA+TGG | - | chr1_1:79348315-79348334 | Msa0046930:CDS | 40.0% |
| ! | AGCTTTTCTGTTGGCCAATA+TGG | + | chr1_1:79348372-79348391 | None:intergenic | 40.0% |
| AGAATTTCCATTACTGGTGC+TGG | - | chr1_1:79348393-79348412 | Msa0046930:CDS | 40.0% | |
| AGCAATAATGTAATGGCCCT+CGG | + | chr1_1:79348457-79348476 | None:intergenic | 40.0% | |
| CGACATCCTTAGTAACTTTG+AGG | + | chr1_1:79348566-79348585 | None:intergenic | 40.0% | |
| TTTGAGAGAGCTTACGGATA+TGG | - | chr1_1:79348790-79348809 | Msa0046930:intron | 40.0% | |
| ATGTATCTTACCCCACTTAG+TGG | - | chr1_1:79348994-79349013 | Msa0046930:intron | 40.0% | |
| TGTATCTTACCCCACTTAGT+GGG | - | chr1_1:79348995-79349014 | Msa0046930:intron | 40.0% | |
| ! | AAGCTTTATCCCACTAAGTG+GGG | + | chr1_1:79349007-79349026 | None:intergenic | 40.0% |
| ! | CAAGCTTTATCCCACTAAGT+GGG | + | chr1_1:79349008-79349027 | None:intergenic | 40.0% |
| TAAACATATGTGGTGTGGAG+TGG | - | chr1_1:79349066-79349085 | Msa0046930:intron | 40.0% | |
| TGGAGTGGTGTCTATTTCAA+CGG | - | chr1_1:79349081-79349100 | Msa0046930:intron | 40.0% | |
| CTACCCTGAATTCAAACAGT+TGG | - | chr1_1:79349176-79349195 | Msa0046930:intron | 40.0% | |
| GGAAACAAATGTGAGCTTGA+AGG | - | chr1_1:79349197-79349216 | Msa0046930:intron | 40.0% | |
| AACAAATGTGAGCTTGAAGG+AGG | - | chr1_1:79349200-79349219 | Msa0046930:intron | 40.0% | |
| TTCATTTGTACACTCGGGTT+AGG | - | chr1_1:79349288-79349307 | Msa0046930:intron | 40.0% | |
| CAAAAGGGCCGTATATGTTA+TGG | + | chr1_1:79349441-79349460 | None:intergenic | 40.0% | |
| ! | CATAACATATACGGCCCTTT+TGG | - | chr1_1:79349439-79349458 | Msa0046930:CDS | 40.0% |
| CTGTGGAAGTAAGTGTCTTT+CGG | + | chr1_1:79349665-79349684 | None:intergenic | 40.0% | |
| ! | AAATTTGAGATGTGGGGAGA+TGG | - | chr1_1:79349687-79349706 | Msa0046930:intron | 40.0% |
| TTCAACACACTCGTCAATGA+AGG | + | chr1_1:79349733-79349752 | None:intergenic | 40.0% | |
| TTCATTGACGAGTGTGTTGA+AGG | - | chr1_1:79349732-79349751 | Msa0046930:intron | 40.0% | |
| !! | CAGGTCTTAAGTTTTGTGAG+AGG | + | chr1_1:79350077-79350096 | None:intergenic | 40.0% |
| AAACTTAAGACCTGCCTATG+TGG | - | chr1_1:79350083-79350102 | Msa0046930:CDS | 40.0% | |
| TTGTATACAACCACATAGGC+AGG | + | chr1_1:79350096-79350115 | None:intergenic | 40.0% | |
| TCGTCACTTCCAATATTCAC+TGG | + | chr1_1:79350247-79350266 | None:intergenic | 40.0% | |
| CACCAACACTTTCCTTCATA+AGG | - | chr1_1:79350744-79350763 | Msa0046930:intron | 40.0% | |
| ! | CACCTTATGAAGGAAAGTGT+TGG | + | chr1_1:79350749-79350768 | None:intergenic | 40.0% |
| ! | TCATGTCTAAGGCTAATCGA+AGG | + | chr1_1:79350856-79350875 | None:intergenic | 40.0% |
| GGAGGTGAGTTAGTTAATCT+TGG | - | chr1_1:79350975-79350994 | Msa0046930:intron | 40.0% | |
| TGACAGATCATGTGGTTGTA+TGG | + | chr1_1:79351001-79351020 | None:intergenic | 40.0% | |
| ! | TAGACCAGTGTTGTCGATTA+TGG | - | chr1_1:79351074-79351093 | Msa0046930:intron | 40.0% |
| ATTCGTTGTCTGTGCTTCAT+TGG | - | chr1_1:79351293-79351312 | Msa0046930:CDS | 40.0% | |
| !! | GGTGTTGATGTAACATCCTA+TGG | - | chr1_1:79351435-79351454 | Msa0046930:CDS | 40.0% |
| ATCCTATGGATCATCCAAAG+TGG | - | chr1_1:79351449-79351468 | Msa0046930:CDS | 40.0% | |
| TACCACTTTGGATGATCCAT+AGG | + | chr1_1:79351454-79351473 | None:intergenic | 40.0% | |
| AAGTGAACCTAGTTGAACAG+GGG | + | chr1_1:79351487-79351506 | None:intergenic | 40.0% | |
| GAAGTGAACCTAGTTGAACA+GGG | + | chr1_1:79351488-79351507 | None:intergenic | 40.0% | |
| CTGTTCAACTAGGTTCACTT+CGG | - | chr1_1:79351487-79351506 | Msa0046930:intron | 40.0% | |
| TGTTCAACTAGGTTCACTTC+GGG | - | chr1_1:79351488-79351507 | Msa0046930:intron | 40.0% | |
| ! | TGTTTTATGGTGCCTGTTTG+AGG | - | chr1_1:79351672-79351691 | Msa0046930:intron | 40.0% |
| CTTTCACTCCTCTCTTCATC+AGG | - | chr1_1:79347931-79347950 | Msa0046930:three_prime_UTR | 45.0% | |
| GAATGCGAACCGACACAAAT+TGG | + | chr1_1:79348092-79348111 | None:intergenic | 45.0% | |
| GTCATTAGACCAGGATACTG+AGG | + | chr1_1:79348203-79348222 | None:intergenic | 45.0% | |
| ! | ATGGCTCTCTCTCAAGGTTT+TGG | + | chr1_1:79348353-79348372 | None:intergenic | 45.0% |
| ACCTTGAGAGAGAGCCATAT+TGG | - | chr1_1:79348355-79348374 | Msa0046930:CDS | 45.0% | |
| ! | ATTTCCATTACTGGTGCTGG+TGG | - | chr1_1:79348396-79348415 | Msa0046930:CDS | 45.0% |
| AAATCCACCAGCACCAGTAA+TGG | + | chr1_1:79348403-79348422 | None:intergenic | 45.0% | |
| GAAGAATGAGCACATGACTG+AGG | - | chr1_1:79348488-79348507 | Msa0046930:intron | 45.0% | |
| AATCTTGCTGCTGATATGGG+TGG | - | chr1_1:79348597-79348616 | Msa0046930:intron | 45.0% | |
| ATCTTGCTGCTGATATGGGT+GGG | - | chr1_1:79348598-79348617 | Msa0046930:intron | 45.0% | |
| ! | CTGCTGTTTGAGAGAGCTTA+CGG | - | chr1_1:79348784-79348803 | Msa0046930:intron | 45.0% |
| ! | CCAAGCTTTATCCCACTAAG+TGG | + | chr1_1:79349009-79349028 | None:intergenic | 45.0% |
| CCACTTAGTGGGATAAAGCT+TGG | - | chr1_1:79349006-79349025 | Msa0046930:intron | 45.0% | |
| AGGGTAGATACAAGCACTAG+AGG | + | chr1_1:79349163-79349182 | None:intergenic | 45.0% | |
| TTCCAGCCACAAGATGCATA+TGG | - | chr1_1:79349337-79349356 | Msa0046930:intron | 45.0% | |
| TCCAGCCACAAGATGCATAT+GGG | - | chr1_1:79349338-79349357 | Msa0046930:intron | 45.0% | |
| ! | TTTGGAATTGAGTGCCGCAT+TGG | - | chr1_1:79349409-79349428 | Msa0046930:CDS | 45.0% |
| ! | TTGGAATTGAGTGCCGCATT+GGG | - | chr1_1:79349410-79349429 | Msa0046930:CDS | 45.0% |
| GGGCGGTTCCATAACATATA+CGG | - | chr1_1:79349430-79349449 | Msa0046930:CDS | 45.0% | |
| ! | TATACGGCCCTTTTGGTACA+TGG | - | chr1_1:79349446-79349465 | Msa0046930:CDS | 45.0% |
| ACACTCGTCAATGAAGGTGA+AGG | + | chr1_1:79349727-79349746 | None:intergenic | 45.0% | |
| CAATAGACACGAGATCAGCA+TGG | + | chr1_1:79349773-79349792 | None:intergenic | 45.0% | |
| !! | TTCCAATATTCACTGGCTCC+CGG | + | chr1_1:79350240-79350259 | None:intergenic | 45.0% |
| ATACCCATCCAACACATTCC+TGG | - | chr1_1:79350322-79350341 | Msa0046930:intron | 45.0% | |
| GGCTCCAACAATGAAGTTGA+AGG | - | chr1_1:79350405-79350424 | Msa0046930:CDS | 45.0% | |
| ! | GACAGGTTGACACCTTATGA+AGG | + | chr1_1:79350759-79350778 | None:intergenic | 45.0% |
| GTGTTGGAAATGTGTCTGAC+AGG | + | chr1_1:79350776-79350795 | None:intergenic | 45.0% | |
| ACATAGCTGACACTCGAGTT+AGG | - | chr1_1:79350889-79350908 | Msa0046930:intron | 45.0% | |
| CTCGAGTTAGGTCTGATAGA+TGG | - | chr1_1:79350901-79350920 | Msa0046930:intron | 45.0% | |
| CACGGACGGTGTCTAAATAA+AGG | + | chr1_1:79351248-79351267 | None:intergenic | 45.0% | |
| TTAGACACCGTCCGTGTTAA+TGG | - | chr1_1:79351252-79351271 | Msa0046930:CDS | 45.0% | |
| TAGACACCGTCCGTGTTAAT+GGG | - | chr1_1:79351253-79351272 | Msa0046930:CDS | 45.0% | |
| TACAGACCCATTAACACGGA+CGG | + | chr1_1:79351262-79351281 | None:intergenic | 45.0% | |
| AGAGCAGCTTGAGAAAGAGA+AGG | - | chr1_1:79351407-79351426 | Msa0046930:CDS | 45.0% | |
| CGAAGTGAACCTAGTTGAAC+AGG | + | chr1_1:79351489-79351508 | None:intergenic | 45.0% | |
| GAGAGGAACCTGATGAAGAG+AGG | + | chr1_1:79347942-79347961 | None:intergenic | 50.0% | |
| AAGCACACAACACACGCTAG+TGG | + | chr1_1:79348248-79348267 | None:intergenic | 50.0% | |
| TTGCGCAGAATGGGAAGTTC+TGG | - | chr1_1:79348300-79348319 | Msa0046930:CDS | 50.0% | |
| GCCAATATGGCTCTCTCTCA+AGG | + | chr1_1:79348359-79348378 | None:intergenic | 50.0% | |
| CTTAAGACGGCGAGCAATGT+GGG | + | chr1_1:79348433-79348452 | None:intergenic | 50.0% | |
| TCTTAAGACGGCGAGCAATG+TGG | + | chr1_1:79348434-79348453 | None:intergenic | 50.0% | |
| AATGGCCCTCGGTCTTAAGA+CGG | + | chr1_1:79348446-79348465 | None:intergenic | 50.0% | |
| GACCAACAACAAACCTCAGC+AGG | + | chr1_1:79349237-79349256 | None:intergenic | 50.0% | |
| TCCAGCCCATATGCATCTTG+TGG | + | chr1_1:79349346-79349365 | None:intergenic | 50.0% | |
| TGTTATGGAACCGCCCAATG+CGG | + | chr1_1:79349426-79349445 | None:intergenic | 50.0% | |
| ! | GGCCCTTTTGGTACATGGAA+AGG | - | chr1_1:79349451-79349470 | Msa0046930:CDS | 50.0% |
| !! | TTTGTTGTTCGTCGCACAGG+TGG | - | chr1_1:79349612-79349631 | Msa0046930:intron | 50.0% |
| GTCTTTCGGCAAAAAGCAGC+AGG | + | chr1_1:79349651-79349670 | None:intergenic | 50.0% | |
| ! | AGTGTGTTGAAGGCGTGCTT+AGG | - | chr1_1:79349742-79349761 | Msa0046930:intron | 50.0% |
| TTCCGGGAGCCAGTGAATAT+TGG | - | chr1_1:79350235-79350254 | Msa0046930:intron | 50.0% | |
| GGACCAGGAATGTGTTGGAT+GGG | + | chr1_1:79350328-79350347 | None:intergenic | 50.0% | |
| TGGACCAGGAATGTGTTGGA+TGG | + | chr1_1:79350329-79350348 | None:intergenic | 50.0% | |
| CAACACATTCCTGGTCCAGA+GGG | - | chr1_1:79350331-79350350 | Msa0046930:intron | 50.0% | |
| CCAAGCCGAAGTCATGTCTA+AGG | + | chr1_1:79350867-79350886 | None:intergenic | 50.0% | |
| CCTTAGACATGACTTCGGCT+TGG | - | chr1_1:79350864-79350883 | Msa0046930:intron | 50.0% | |
| CAGCTTGAGAAAGAGAAGGC+TGG | - | chr1_1:79351411-79351430 | Msa0046930:CDS | 50.0% | |
| CTTGAGAAAGAGAAGGCTGG+AGG | - | chr1_1:79351414-79351433 | Msa0046930:CDS | 50.0% | |
| GGCTTGAGTCGATACCACTT+TGG | + | chr1_1:79351466-79351485 | None:intergenic | 50.0% | |
| ACTCAAGCCCCTGTTCAACT+AGG | - | chr1_1:79351477-79351496 | Msa0046930:CDS | 50.0% | |
| GCTGCAGATGGCAATGAATG+AGG | - | chr1_1:79351510-79351529 | Msa0046930:intron | 50.0% | |
| ! | TGCCTGTTTGAGGCAGTACT+TGG | - | chr1_1:79351682-79351701 | Msa0046930:intron | 50.0% |
| ! | CACCAAGTACTGCCTCAAAC+AGG | + | chr1_1:79351687-79351706 | None:intergenic | 50.0% |
| ! | CAACACACGCTAGTGGACGT+GGG | + | chr1_1:79348241-79348260 | None:intergenic | 55.0% |
| ! | ACAACACACGCTAGTGGACG+TGG | + | chr1_1:79348242-79348261 | None:intergenic | 55.0% |
| TGCTGCTGATATGGGTGGGA+TGG | - | chr1_1:79348602-79348621 | Msa0046930:intron | 55.0% | |
| GCTGCTGATATGGGTGGGAT+GGG | - | chr1_1:79348603-79348622 | Msa0046930:intron | 55.0% | |
| ACAACAAACCTCAGCAGGCC+AGG | + | chr1_1:79349232-79349251 | None:intergenic | 55.0% | |
| !! | GGCCTGCTGAGGTTTGTTGT+TGG | - | chr1_1:79349232-79349251 | Msa0046930:intron | 55.0% |
| GCCCATATGCATCTTGTGGC+TGG | + | chr1_1:79349342-79349361 | None:intergenic | 55.0% | |
| GCCACAAGATGCATATGGGC+TGG | - | chr1_1:79349342-79349361 | Msa0046930:intron | 55.0% | |
| ! | GAATTGAGTGCCGCATTGGG+CGG | - | chr1_1:79349413-79349432 | Msa0046930:CDS | 55.0% |
| !! | CGCTTTGTTGTTCGTCGCAC+AGG | - | chr1_1:79349609-79349628 | Msa0046930:intron | 55.0% |
| TTGTTCGTCGCACAGGTGGA+AGG | - | chr1_1:79349616-79349635 | Msa0046930:intron | 55.0% | |
| TGTTCGTCGCACAGGTGGAA+GGG | - | chr1_1:79349617-79349636 | Msa0046930:intron | 55.0% | |
| TCGCACAGGTGGAAGGGAAA+AGG | - | chr1_1:79349623-79349642 | Msa0046930:intron | 55.0% | |
| CCTCTGGACCAGGAATGTGT+TGG | + | chr1_1:79350333-79350352 | None:intergenic | 55.0% | |
| CCAACACATTCCTGGTCCAG+AGG | - | chr1_1:79350330-79350349 | Msa0046930:intron | 55.0% | |
| ! | GACACGAGGGCACATGGGAT+GGG | + | chr1_1:79348036-79348055 | None:intergenic | 60.0% |
| GATACGACATACCCCCCACG+AGG | + | chr1_1:79348063-79348082 | None:intergenic | 60.0% | |
| ! | CACGCTAGTGGACGTGGGAT+TGG | + | chr1_1:79348236-79348255 | None:intergenic | 60.0% |
| AAGACGGCGAGCAATGTGGG+AGG | + | chr1_1:79348430-79348449 | None:intergenic | 60.0% | |
| TGCTCGCCGTCTTAAGACCG+AGG | - | chr1_1:79348437-79348456 | Msa0046930:intron | 60.0% | |
| GCTCGCCGTCTTAAGACCGA+GGG | - | chr1_1:79348438-79348457 | Msa0046930:intron | 60.0% | |
| GCTTGAAGGAGGCTGATGCC+TGG | - | chr1_1:79349211-79349230 | Msa0046930:intron | 60.0% | |
| GGTTCACTTCGGGCTGCAGA+TGG | - | chr1_1:79351498-79351517 | Msa0046930:intron | 60.0% | |
| ! | CGACACGAGGGCACATGGGA+TGG | + | chr1_1:79348037-79348056 | None:intergenic | 65.0% |
| TCCCATGTGCCCTCGTGTCG+TGG | - | chr1_1:79348037-79348056 | Msa0046930:three_prime_UTR | 65.0% | |
| ! | GCCACGACACGAGGGCACAT+GGG | + | chr1_1:79348041-79348060 | None:intergenic | 65.0% |
| CCACGAACACCCTCTGGACC+AGG | + | chr1_1:79350343-79350362 | None:intergenic | 65.0% | |
| !! | CCTGGTCCAGAGGGTGTTCG+TGG | - | chr1_1:79350340-79350359 | Msa0046930:CDS | 65.0% |
| TTGCGGCCACGAACACCCTC+TGG | + | chr1_1:79350349-79350368 | None:intergenic | 65.0% | |
| ! | GGCCACGACACGAGGGCACA+TGG | + | chr1_1:79348042-79348061 | None:intergenic | 70.0% |
| CCCACGAGGCCACGACACGA+GGG | + | chr1_1:79348049-79348068 | None:intergenic | 70.0% | |
| CCCTCGTGTCGTGGCCTCGT+GGG | - | chr1_1:79348046-79348065 | Msa0046930:three_prime_UTR | 70.0% | |
| CCTCGTGTCGTGGCCTCGTG+GGG | - | chr1_1:79348047-79348066 | Msa0046930:three_prime_UTR | 70.0% | |
| CTCGTGTCGTGGCCTCGTGG+GGG | - | chr1_1:79348048-79348067 | Msa0046930:three_prime_UTR | 70.0% | |
| TCGTGTCGTGGCCTCGTGGG+GGG | - | chr1_1:79348049-79348068 | Msa0046930:three_prime_UTR | 70.0% | |
| GGCTGATGCCTGGCCTGCTG+AGG | - | chr1_1:79349221-79349240 | Msa0046930:intron | 70.0% | |
| GCCCTCGTGTCGTGGCCTCG+TGG | - | chr1_1:79348045-79348064 | Msa0046930:three_prime_UTR | 75.0% | |
| CCCCACGAGGCCACGACACG+AGG | + | chr1_1:79348050-79348069 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 79347884 | 79351921 | 79347884 | ID=Msa0046930;Name=Msa0046930 |
| chr1_1 | mRNA | 79347884 | 79351921 | 79347884 | ID=Msa0046930-mRNA-1;Parent=Msa0046930;Name=Msa0046930-mRNA-1;_AED=0.06;_eAED=0.06;_QI=70|1|1|1|0.83|0.71|7|391|376 |
| chr1_1 | exon | 79347884 | 79348430 | 79347884 | ID=Msa0046930-mRNA-1:exon:27379;Parent=Msa0046930-mRNA-1 |
| chr1_1 | exon | 79349379 | 79349586 | 79349379 | ID=Msa0046930-mRNA-1:exon:27378;Parent=Msa0046930-mRNA-1 |
| chr1_1 | exon | 79350042 | 79350174 | 79350042 | ID=Msa0046930-mRNA-1:exon:27377;Parent=Msa0046930-mRNA-1 |
| chr1_1 | exon | 79350333 | 79350462 | 79350333 | ID=Msa0046930-mRNA-1:exon:27376;Parent=Msa0046930-mRNA-1 |
| chr1_1 | exon | 79350563 | 79350656 | 79350563 | ID=Msa0046930-mRNA-1:exon:27375;Parent=Msa0046930-mRNA-1 |
| chr1_1 | exon | 79351087 | 79351497 | 79351087 | ID=Msa0046930-mRNA-1:exon:27374;Parent=Msa0046930-mRNA-1 |
| chr1_1 | exon | 79351853 | 79351921 | 79351853 | ID=Msa0046930-mRNA-1:exon:27373;Parent=Msa0046930-mRNA-1 |
| chr1_1 | five_prime_UTR | 79351853 | 79351921 | 79351853 | ID=Msa0046930-mRNA-1:five_prime_utr;Parent=Msa0046930-mRNA-1 |
| chr1_1 | five_prime_UTR | 79351497 | 79351497 | 79351497 | ID=Msa0046930-mRNA-1:five_prime_utr;Parent=Msa0046930-mRNA-1 |
| chr1_1 | CDS | 79351087 | 79351496 | 79351087 | ID=Msa0046930-mRNA-1:cds;Parent=Msa0046930-mRNA-1 |
| chr1_1 | CDS | 79350563 | 79350656 | 79350563 | ID=Msa0046930-mRNA-1:cds;Parent=Msa0046930-mRNA-1 |
| chr1_1 | CDS | 79350333 | 79350462 | 79350333 | ID=Msa0046930-mRNA-1:cds;Parent=Msa0046930-mRNA-1 |
| chr1_1 | CDS | 79350042 | 79350174 | 79350042 | ID=Msa0046930-mRNA-1:cds;Parent=Msa0046930-mRNA-1 |
| chr1_1 | CDS | 79349379 | 79349586 | 79349379 | ID=Msa0046930-mRNA-1:cds;Parent=Msa0046930-mRNA-1 |
| chr1_1 | CDS | 79348275 | 79348430 | 79348275 | ID=Msa0046930-mRNA-1:cds;Parent=Msa0046930-mRNA-1 |
| chr1_1 | three_prime_UTR | 79347884 | 79348274 | 79347884 | ID=Msa0046930-mRNA-1:three_prime_utr;Parent=Msa0046930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
