Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1129400 | AHK12705.1 | 99.468 | 376 | 2 | 0 | 1 | 376 | 1 | 376 | 0.0 | 788 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1129400 | sp|A2Z7B3|GME1_ORYSI | 90.212 | 378 | 35 | 1 | 1 | 376 | 1 | 378 | 0.0 | 724 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1129400 | W8G2X4 | 99.468 | 376 | 2 | 0 | 1 | 376 | 1 | 376 | 0.0 | 788 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa1129400 | -0.808859 | 2.518360e-50 | -8.615850e-47 |
| Msa0005000 | Msa1129400 | -0.801763 | 7.723971e-49 | -8.615850e-47 |
| Msa0046930 | Msa1129400 | 0.926915 | 2.429347e-91 | -8.615850e-47 |
| Msa0098390 | Msa1129400 | -0.804910 | 1.721645e-49 | -8.615850e-47 |
| Msa0609970 | Msa1129400 | 0.811948 | 5.422850e-51 | -8.615850e-47 |
| Msa0626680 | Msa1129400 | 0.828402 | 9.171991e-55 | -8.615850e-47 |
| Msa0650650 | Msa1129400 | 0.807969 | 3.898884e-50 | -8.615850e-47 |
| Msa0650740 | Msa1129400 | 0.813066 | 3.089195e-51 | -8.615850e-47 |
| Msa0664760 | Msa1129400 | 0.849048 | 4.151620e-60 | -8.615850e-47 |
| Msa0196020 | Msa1129400 | -0.820895 | 5.385557e-53 | -8.615850e-47 |
| Msa0370310 | Msa1129400 | 0.821731 | 3.454612e-53 | -8.615850e-47 |
| Msa0370870 | Msa1129400 | 0.808511 | 2.988081e-50 | -8.615850e-47 |
| Msa0404700 | Msa1129400 | 0.820428 | 6.895533e-53 | -8.615850e-47 |
| Msa0462540 | Msa1129400 | 0.809812 | 1.572782e-50 | -8.615850e-47 |
| Msa1038360 | Msa1129400 | 0.956388 | 3.321840e-114 | -8.615850e-47 |
| Msa0239940 | Msa1129400 | 0.804214 | 2.405590e-49 | -8.615850e-47 |
| Msa0275400 | Msa1129400 | -0.853471 | 2.338024e-61 | -8.615850e-47 |
| Msa0362060 | Msa1129400 | 0.829560 | 4.807289e-55 | -8.615850e-47 |
| Msa0363170 | Msa1129400 | 0.816210 | 6.218840e-52 | -8.615850e-47 |
| Msa1129400 | Msa1182630 | 0.815610 | 8.464414e-52 | -8.615850e-47 |
| Msa1129400 | Msa1182640 | 0.812686 | 3.741867e-51 | -8.615850e-47 |
| Msa1129400 | Msa1218650 | 0.800664 | 1.295859e-48 | -8.615850e-47 |
| Msa1129400 | Msa1229850 | 0.806117 | 9.613358e-50 | -8.615850e-47 |
| Msa1129400 | Msa1272520 | 0.811739 | 6.021292e-51 | -8.615850e-47 |
| Msa1129400 | Msa1300860 | 0.814923 | 1.203177e-51 | -8.615850e-47 |
| Msa1129400 | Msa1398860 | 0.832794 | 7.711359e-56 | -8.615850e-47 |
| Msa1129400 | Msa1428370 | 0.800755 | 1.241811e-48 | -8.615850e-47 |
| Msa1129400 | Msa1442220 | -0.852761 | 3.734680e-61 | -8.615850e-47 |
| Msa1129400 | Msa1466090 | 0.811617 | 6.400204e-51 | -8.615850e-47 |
| Msa0575990 | Msa1129400 | -0.824719 | 6.931395e-54 | -8.615850e-47 |
| Msa0576100 | Msa1129400 | -0.835456 | 1.660770e-56 | -8.615850e-47 |
| Msa0578090 | Msa1129400 | 0.837222 | 5.903438e-57 | -8.615850e-47 |
| Msa0579340 | Msa1129400 | 0.812849 | 3.446376e-51 | -8.615850e-47 |
| Msa0586850 | Msa1129400 | 0.834430 | 3.010762e-56 | -8.615850e-47 |
| Msa0944730 | Msa1129400 | 0.801751 | 7.765459e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1129400 | MtrunA17_Chr7g0274131 | 99.204 | 377 | 2 | 1 | 1 | 376 | 1 | 377 | 0.0 | 781 |
| Msa1129400 | MtrunA17_Chr1g0190771 | 90.981 | 377 | 33 | 1 | 1 | 376 | 1 | 377 | 0.0 | 728 |
| Msa1129400 | MtrunA17_Chr4g0067461 | 28.254 | 315 | 208 | 8 | 29 | 339 | 112 | 412 | 8.33e-28 | 113 |
| Msa1129400 | MtrunA17_Chr2g0327981 | 27.796 | 313 | 202 | 9 | 28 | 330 | 38 | 336 | 8.40e-27 | 109 |
| Msa1129400 | MtrunA17_Chr4g0031131 | 26.786 | 336 | 211 | 11 | 15 | 330 | 10 | 330 | 2.14e-26 | 108 |
| Msa1129400 | MtrunA17_Chr1g0195521 | 27.378 | 347 | 212 | 12 | 28 | 348 | 118 | 450 | 8.97e-25 | 105 |
| Msa1129400 | MtrunA17_Chr7g0268991 | 25.309 | 324 | 212 | 11 | 29 | 341 | 16 | 320 | 1.78e-19 | 88.2 |
| Msa1129400 | MtrunA17_Chr1g0182091 | 28.033 | 239 | 154 | 7 | 114 | 345 | 1 | 228 | 3.94e-17 | 79.7 |
| Msa1129400 | MtrunA17_Chr5g0398811 | 24.852 | 338 | 212 | 12 | 28 | 334 | 90 | 416 | 3.76e-16 | 79.3 |
| Msa1129400 | MtrunA17_Chr4g0056941 | 24.118 | 340 | 214 | 11 | 30 | 337 | 95 | 422 | 1.76e-15 | 77.4 |
| Msa1129400 | MtrunA17_Chr4g0011281 | 25.000 | 336 | 210 | 13 | 30 | 334 | 103 | 427 | 2.37e-15 | 77.0 |
| Msa1129400 | MtrunA17_Chr7g0230291 | 24.110 | 365 | 227 | 14 | 6 | 334 | 58 | 408 | 5.71e-14 | 72.8 |
| Msa1129400 | MtrunA17_Chr1g0147841 | 26.911 | 327 | 212 | 12 | 26 | 336 | 3 | 318 | 1.90e-13 | 71.6 |
| Msa1129400 | MtrunA17_Chr3g0121661 | 23.481 | 362 | 205 | 14 | 30 | 342 | 101 | 439 | 9.09e-13 | 69.3 |
| Msa1129400 | MtrunA17_Chr4g0073351 | 23.304 | 339 | 216 | 11 | 28 | 334 | 95 | 421 | 1.50e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1129400 | AT5G28840.2 | 89.390 | 377 | 39 | 1 | 1 | 376 | 1 | 377 | 0.0 | 715 |
| Msa1129400 | AT5G28840.1 | 89.390 | 377 | 39 | 1 | 1 | 376 | 1 | 377 | 0.0 | 715 |
| Msa1129400 | AT3G53520.1 | 29.712 | 313 | 195 | 11 | 26 | 328 | 118 | 415 | 8.32e-29 | 116 |
| Msa1129400 | AT3G46440.2 | 29.260 | 311 | 196 | 9 | 28 | 328 | 29 | 325 | 1.88e-28 | 114 |
| Msa1129400 | AT3G46440.1 | 29.260 | 311 | 196 | 9 | 28 | 328 | 29 | 325 | 1.88e-28 | 114 |
| Msa1129400 | AT5G59290.4 | 28.939 | 311 | 197 | 9 | 28 | 328 | 1 | 297 | 3.88e-28 | 112 |
| Msa1129400 | AT5G59290.1 | 28.939 | 311 | 197 | 9 | 28 | 328 | 30 | 326 | 5.22e-28 | 112 |
| Msa1129400 | AT5G59290.2 | 28.939 | 311 | 197 | 9 | 28 | 328 | 45 | 341 | 7.81e-28 | 112 |
| Msa1129400 | AT5G59290.3 | 28.939 | 311 | 197 | 9 | 28 | 328 | 23 | 319 | 9.58e-28 | 112 |
| Msa1129400 | AT3G62830.2 | 28.013 | 307 | 208 | 8 | 28 | 330 | 119 | 416 | 1.43e-27 | 113 |
| Msa1129400 | AT3G62830.1 | 28.013 | 307 | 208 | 8 | 28 | 330 | 119 | 416 | 1.43e-27 | 113 |
| Msa1129400 | AT2G47650.1 | 28.197 | 305 | 206 | 8 | 28 | 328 | 121 | 416 | 2.18e-27 | 112 |
| Msa1129400 | AT2G28760.1 | 27.974 | 311 | 200 | 9 | 28 | 328 | 31 | 327 | 2.96e-27 | 110 |
| Msa1129400 | AT2G28760.2 | 27.974 | 311 | 200 | 9 | 28 | 328 | 31 | 327 | 2.96e-27 | 110 |
| Msa1129400 | AT2G28760.3 | 27.974 | 311 | 200 | 9 | 28 | 328 | 31 | 327 | 2.96e-27 | 110 |
| Msa1129400 | AT2G28760.4 | 27.974 | 311 | 200 | 9 | 28 | 328 | 62 | 358 | 8.84e-27 | 110 |
| Msa1129400 | AT3G53520.2 | 29.073 | 313 | 195 | 12 | 26 | 328 | 118 | 413 | 8.66e-26 | 108 |
| Msa1129400 | AT2G47650.2 | 27.653 | 311 | 206 | 9 | 28 | 328 | 121 | 422 | 2.43e-25 | 107 |
| Msa1129400 | AT3G53520.4 | 27.219 | 338 | 194 | 13 | 26 | 328 | 118 | 438 | 6.75e-24 | 102 |
| Msa1129400 | AT1G73250.1 | 25.625 | 320 | 202 | 8 | 29 | 334 | 18 | 315 | 1.64e-21 | 94.4 |
| Msa1129400 | AT1G17890.2 | 25.000 | 324 | 217 | 8 | 29 | 343 | 13 | 319 | 1.93e-21 | 94.4 |
| Msa1129400 | AT1G17890.3 | 25.000 | 324 | 217 | 8 | 29 | 343 | 13 | 319 | 1.93e-21 | 94.4 |
| Msa1129400 | AT1G17890.1 | 25.000 | 324 | 217 | 8 | 29 | 343 | 21 | 327 | 2.05e-21 | 94.4 |
| Msa1129400 | AT2G45310.1 | 25.676 | 370 | 217 | 16 | 6 | 334 | 71 | 423 | 6.46e-18 | 85.1 |
| Msa1129400 | AT4G00110.1 | 25.223 | 337 | 208 | 13 | 30 | 334 | 93 | 417 | 1.32e-15 | 78.2 |
| Msa1129400 | AT1G02000.1 | 27.160 | 243 | 151 | 8 | 28 | 255 | 92 | 323 | 1.32e-14 | 75.1 |
| Msa1129400 | AT3G14790.1 | 26.074 | 326 | 216 | 14 | 30 | 340 | 9 | 324 | 2.97e-13 | 71.6 |
| Msa1129400 | AT3G14790.2 | 26.074 | 326 | 216 | 14 | 30 | 340 | 12 | 327 | 3.59e-13 | 71.2 |
| Msa1129400 | AT3G23820.1 | 23.823 | 361 | 221 | 15 | 28 | 348 | 112 | 458 | 2.61e-12 | 68.2 |
| Msa1129400 | AT4G30440.1 | 23.529 | 340 | 214 | 12 | 28 | 334 | 88 | 414 | 3.00e-12 | 68.2 |
| Msa1129400 | AT1G53500.1 | 25.228 | 329 | 215 | 14 | 30 | 340 | 11 | 326 | 3.89e-12 | 68.2 |
Find 127 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTATCTTAAGGTTAATTT+TGG | 0.179489 | 7_3:-81377630 | Msa1129400:three_prime_UTR |
| AAGCATTATAACAAAGATTT+TGG | 0.185817 | 7_3:-81379868 | Msa1129400:CDS |
| GTTTCCAACTGTTTGAATTC+AGG | 0.202846 | 7_3:+81380079 | None:intergenic |
| AGTTCCATCTTGTTGATCTT+AGG | 0.236542 | 7_3:-81380733 | Msa1129400:CDS |
| GGCTTAGAATTACATACTTT+TGG | 0.241436 | 7_3:-81377880 | Msa1129400:CDS |
| CCCAATAAATAGTCCTTAAA+AGG | 0.242441 | 7_3:+81377462 | None:intergenic |
| TTTCAATCTTGCTGCTGATA+TGG | 0.252773 | 7_3:-81380666 | Msa1129400:CDS |
| AAGCTAAGAATTTCCATTAC+TGG | 0.266863 | 7_3:-81380872 | Msa1129400:CDS |
| TCTTGTTGATCTTAGGGTTA+TGG | 0.275401 | 7_3:-81380726 | Msa1129400:CDS |
| CATAACATATACGGCCCTTT+TGG | 0.311202 | 7_3:-81379820 | Msa1129400:CDS |
| ATGGCTCTCTCTCAAGGTTT+TGG | 0.316832 | 7_3:+81380909 | None:intergenic |
| ATTGAAGCTGCTAGGATTAA+TGG | 0.333537 | 7_3:-81380572 | Msa1129400:CDS |
| CATCGACAGACAAACAAATA+TGG | 0.338177 | 7_3:-81377437 | Msa1129400:three_prime_UTR |
| TTGCGCAGAATGGGAAGTTC+TGG | 0.340402 | 7_3:-81380959 | Msa1129400:intron |
| CGAAGTGAACCTAGTTGAAC+AGG | 0.343532 | 7_3:+81377773 | None:intergenic |
| TTCAATCTTGCTGCTGATAT+GGG | 0.352299 | 7_3:-81380665 | Msa1129400:CDS |
| GATTGACTAAATCAGACTTC+CGG | 0.353153 | 7_3:-81379041 | Msa1129400:CDS |
| CTTTCACTCCTCTCTTCATC+AGG | 0.354824 | 7_3:-81381328 | Msa1129400:intron |
| AATACCTTCAACTTCATTGT+TGG | 0.357453 | 7_3:+81378850 | None:intergenic |
| TTCCGGGAGCCAGTGAATAT+TGG | 0.369817 | 7_3:-81379024 | Msa1129400:CDS |
| TTCCAGCCACAAGATGCATA+TGG | 0.370660 | 7_3:-81379922 | Msa1129400:intron |
| ATTGACTAAATCAGACTTCC+GGG | 0.372161 | 7_3:-81379040 | Msa1129400:CDS |
| AAGACGAATTGAGATTTGAT+TGG | 0.376922 | 7_3:+81381348 | None:intergenic |
| ACTTAAACGTTTCAAGTGAA+TGG | 0.390110 | 7_3:-81377701 | Msa1129400:three_prime_UTR |
| GTTCCATCTTGTTGATCTTA+GGG | 0.392044 | 7_3:-81380732 | Msa1129400:CDS |
| ATTACATTATTGCTTCTGAT+TGG | 0.392690 | 7_3:-81380796 | Msa1129400:CDS |
| ATACATAATGACAGAATGAT+TGG | 0.394363 | 7_3:+81380622 | None:intergenic |
| CAAAAGGGCCGTATATGTTA+TGG | 0.395238 | 7_3:+81379821 | None:intergenic |
| ACCTTGAGAGAGAGCCATAT+TGG | 0.402395 | 7_3:-81380904 | Msa1129400:CDS |
| TTTCCAACTGTTTGAATTCA+GGG | 0.404484 | 7_3:+81380080 | None:intergenic |
| CTGTGGAAGTAAGTGTCTTT+CGG | 0.410596 | 7_3:+81379599 | None:intergenic |
| GGGCGGTTCCATAACATATA+CGG | 0.411031 | 7_3:-81379829 | Msa1129400:CDS |
| TGCTGCTGATATGGGTGGGA+TGG | 0.411073 | 7_3:-81380657 | Msa1129400:CDS |
| ATAGTTAATAAGTTATCTTA+AGG | 0.415728 | 7_3:-81377640 | Msa1129400:three_prime_UTR |
| GACCAACAACAAACCTCAGC+AGG | 0.427378 | 7_3:+81380025 | None:intergenic |
| AGACGAATTGAGATTTGATT+GGG | 0.432903 | 7_3:+81381349 | None:intergenic |
| GCCAATATGGCTCTCTCTCA+AGG | 0.433604 | 7_3:+81380903 | None:intergenic |
| AGAATTTCCATTACTGGTGC+TGG | 0.433626 | 7_3:-81380866 | Msa1129400:CDS |
| CGACATCCTTAGTAACTTTG+AGG | 0.437723 | 7_3:+81380696 | None:intergenic |
| TTGCGGCCACGAACACCCTC+TGG | 0.442633 | 7_3:+81378913 | None:intergenic |
| AGTTCTGGAACAAACGACTA+TGG | 0.445353 | 7_3:-81380944 | Msa1129400:CDS |
| ATACCCATCCAACACATTCC+TGG | 0.445847 | 7_3:-81378937 | Msa1129400:CDS |
| TGCCTGTTTGAGGCAGTACT+TGG | 0.446490 | 7_3:-81377577 | Msa1129400:three_prime_UTR |
| TTGGAATTGAGTGCCGCATT+GGG | 0.450298 | 7_3:-81379849 | Msa1129400:CDS |
| TCCAGCCACAAGATGCATAT+GGG | 0.456498 | 7_3:-81379921 | Msa1129400:intron |
| CAAACAAATATGGACAGAAA+AGG | 0.458430 | 7_3:-81377427 | Msa1129400:three_prime_UTR |
| CTAGGATTAATGGTGTTAAG+AGG | 0.463596 | 7_3:-81380562 | Msa1129400:intron |
| CACAGATAAATTTGAGATGT+GGG | 0.465937 | 7_3:-81379581 | Msa1129400:CDS |
| TGTTCAACTAGGTTCACTTC+GGG | 0.469995 | 7_3:-81377771 | Msa1129400:CDS |
| TTCATTGATGAGTGTGTTGA+AGG | 0.471656 | 7_3:-81379529 | Msa1129400:CDS |
| AACGTTTCAAGTGAATGGTT+AGG | 0.473054 | 7_3:-81377696 | Msa1129400:three_prime_UTR |
| AAATTTGAGATGTGGGGAGA+TGG | 0.478216 | 7_3:-81379574 | Msa1129400:CDS |
| GCTGGAAAGTTCATAACTAA+AGG | 0.479702 | 7_3:-81377381 | Msa1129400:three_prime_UTR |
| CACCAAGTACTGCCTCAAAC+AGG | 0.480807 | 7_3:+81377575 | None:intergenic |
| GGCTGATGCCTGGCCTGCTG+AGG | 0.481849 | 7_3:-81380038 | Msa1129400:intron |
| TCGTCACTTCCAATATTCAC+TGG | 0.484294 | 7_3:+81379015 | None:intergenic |
| GCTGCTGATATGGGTGGGAT+GGG | 0.485557 | 7_3:-81380656 | Msa1129400:CDS |
| CTGTTCAACTAGGTTCACTT+CGG | 0.486306 | 7_3:-81377772 | Msa1129400:CDS |
| AAACAAATATGGACAGAAAA+GGG | 0.489146 | 7_3:-81377426 | Msa1129400:three_prime_UTR |
| TTGTTCGTCGCACAGGTGGA+AGG | 0.490310 | 7_3:-81379645 | Msa1129400:intron |
| GAATATTGGAAGTGACGAAA+TGG | 0.492369 | 7_3:-81379010 | Msa1129400:CDS |
| CCTGGTCCAGAGGGTGTTCG+TGG | 0.493108 | 7_3:-81378919 | Msa1129400:CDS |
| ATACCTTTCCATGTACCAAA+AGG | 0.493262 | 7_3:+81379805 | None:intergenic |
| GCTTGAAGGAGGCTGATGCC+TGG | 0.494249 | 7_3:-81380048 | Msa1129400:CDS |
| CCACGAACACCCTCTGGACC+AGG | 0.495598 | 7_3:+81378919 | None:intergenic |
| TCGCACAGGTGGAAGGGAAA+AGG | 0.497508 | 7_3:-81379638 | Msa1129400:intron |
| ACAACAAACCTCAGCAGGCC+AGG | 0.498680 | 7_3:+81380030 | None:intergenic |
| GCCACAAGATGCATATGGGC+TGG | 0.501504 | 7_3:-81379917 | Msa1129400:CDS |
| GGTGTTGATGTAACATCCTA+TGG | 0.504451 | 7_3:-81377824 | Msa1129400:CDS |
| TTCCAATATTCACTGGCTCC+CGG | 0.506890 | 7_3:+81379022 | None:intergenic |
| GGCTCCAACAATGAAGTTGA+AGG | 0.508928 | 7_3:-81378854 | Msa1129400:intron |
| AAATCCACCAGCACCAGTAA+TGG | 0.510988 | 7_3:+81380859 | None:intergenic |
| AATCAGAAGCAATAATGTAA+TGG | 0.514034 | 7_3:+81380798 | None:intergenic |
| TTTGGAATTGAGTGCCGCAT+TGG | 0.517604 | 7_3:-81379850 | Msa1129400:CDS |
| CCACAGATAAATTTGAGATG+TGG | 0.517863 | 7_3:-81379582 | Msa1129400:CDS |
| CTACCCTGAATTCAAACAGT+TGG | 0.519009 | 7_3:-81380083 | Msa1129400:CDS |
| AATCTTGCTGCTGATATGGG+TGG | 0.525081 | 7_3:-81380662 | Msa1129400:CDS |
| TAATGACAGAATGATTGGAT+TGG | 0.525124 | 7_3:+81380627 | None:intergenic |
| TTATCAAAGAGAAACTTGGC+TGG | 0.527732 | 7_3:-81378876 | Msa1129400:CDS |
| TAATTGCCTCAAAGTTACTA+AGG | 0.532121 | 7_3:-81380702 | Msa1129400:CDS |
| CTTAAGACGGCGAGCAATGT+GGG | 0.532266 | 7_3:+81380829 | None:intergenic |
| TCCAGCCCATATGCATCTTG+TGG | 0.539478 | 7_3:+81379916 | None:intergenic |
| ATTTCCATTACTGGTGCTGG+TGG | 0.540705 | 7_3:-81380863 | Msa1129400:CDS |
| GGAAACAAATGTGAGCTTGA+AGG | 0.543901 | 7_3:-81380062 | Msa1129400:CDS |
| AGTGTGTTGAAGGCGTGCTT+AGG | 0.545415 | 7_3:-81379519 | Msa1129400:intron |
| CAGCTTGAGAAAGAGAAGGC+TGG | 0.546482 | 7_3:-81377848 | Msa1129400:CDS |
| AAACTTATCAAAGAGAAACT+TGG | 0.552383 | 7_3:-81378880 | Msa1129400:CDS |
| ACTCAAGCCCCTGTTCAACT+AGG | 0.554112 | 7_3:-81377782 | Msa1129400:CDS |
| TACCTTTCCATGTACCAAAA+GGG | 0.556614 | 7_3:+81379806 | None:intergenic |
| ATCTTGCTGCTGATATGGGT+GGG | 0.558451 | 7_3:-81380661 | Msa1129400:CDS |
| GGCTTGAGTCGATACCACTT+TGG | 0.561236 | 7_3:+81377796 | None:intergenic |
| TTCAACACACTCATCAATGA+AGG | 0.562822 | 7_3:+81379531 | None:intergenic |
| GGTTCACTTCGGGCTGCAGA+TGG | 0.567966 | 7_3:-81377761 | Msa1129400:CDS |
| GCTGCAGATGGCAATGAATG+AGG | 0.572119 | 7_3:-81377749 | Msa1129400:exon |
| TCAATATGATTGAAGCTGCT+AGG | 0.580779 | 7_3:-81380580 | Msa1129400:CDS |
| AGCAATAATGTAATGGCCCT+CGG | 0.581156 | 7_3:+81380805 | None:intergenic |
| TAACCCTAAGATCAACAAGA+TGG | 0.582222 | 7_3:+81380729 | None:intergenic |
| TGGACCAGGAATGTGTTGGA+TGG | 0.589910 | 7_3:+81378933 | None:intergenic |
| TGTTCGTCGCACAGGTGGAA+GGG | 0.590103 | 7_3:-81379644 | Msa1129400:intron |
| GAATTGAGTGCCGCATTGGG+CGG | 0.593320 | 7_3:-81379846 | Msa1129400:CDS |
| TCTTAAGACGGCGAGCAATG+TGG | 0.603116 | 7_3:+81380828 | None:intergenic |
| TACCACTTTGGATGATCCAT+AGG | 0.605260 | 7_3:+81377808 | None:intergenic |
| GGACCAGGAATGTGTTGGAT+GGG | 0.608980 | 7_3:+81378934 | None:intergenic |
| CCACATCTCAAATTTATCTG+TGG | 0.609197 | 7_3:+81379582 | None:intergenic |
| TAAGTTTATTGTCTGAATTG+CGG | 0.612171 | 7_3:+81378896 | None:intergenic |
| CCAACACATTCCTGGTCCAG+AGG | 0.619158 | 7_3:-81378929 | Msa1129400:CDS |
| CAACACATTCCTGGTCCAGA+GGG | 0.621739 | 7_3:-81378928 | Msa1129400:CDS |
| TGCTCGCCGTCTTAAGACCG+AGG | 0.623060 | 7_3:-81380822 | Msa1129400:CDS |
| TATCAAAGAGAAACTTGGCT+GGG | 0.625131 | 7_3:-81378875 | Msa1129400:CDS |
| AGGGTAGATACAAGCACTAG+AGG | 0.626056 | 7_3:+81380099 | None:intergenic |
| AATGGCCCTCGGTCTTAAGA+CGG | 0.626199 | 7_3:+81380816 | None:intergenic |
| ACAGATAAATTTGAGATGTG+GGG | 0.627741 | 7_3:-81379580 | Msa1129400:CDS |
| GAGAGGAACCTGATGAAGAG+AGG | 0.631269 | 7_3:+81381320 | None:intergenic |
| GCTCGCCGTCTTAAGACCGA+GGG | 0.637185 | 7_3:-81380821 | Msa1129400:CDS |
| CCTCTGGACCAGGAATGTGT+TGG | 0.642759 | 7_3:+81378929 | None:intergenic |
| ACACTCATCAATGAAGGTGA+AGG | 0.645434 | 7_3:+81379537 | None:intergenic |
| AGAGCAGCTTGAGAAAGAGA+AGG | 0.646063 | 7_3:-81377852 | Msa1129400:CDS |
| GAAGAATGAGCACATGACTG+AGG | 0.648944 | 7_3:-81380771 | Msa1129400:CDS |
| AGTTCATAACTAAAGGACAA+TGG | 0.659790 | 7_3:-81377374 | Msa1129400:three_prime_UTR |
| ATCCTATGGATCATCCAAAG+TGG | 0.669201 | 7_3:-81377810 | Msa1129400:CDS |
| GAAGTGAACCTAGTTGAACA+GGG | 0.670267 | 7_3:+81377774 | None:intergenic |
| CTTGAGAAAGAGAAGGCTGG+AGG | 0.670675 | 7_3:-81377845 | Msa1129400:CDS |
| AATGGTTAGCATGAATGAGA+TGG | 0.673558 | 7_3:-81378992 | Msa1129400:CDS |
| AACAAATGTGAGCTTGAAGG+AGG | 0.696219 | 7_3:-81380059 | Msa1129400:CDS |
| AAGACGGCGAGCAATGTGGG+AGG | 0.698789 | 7_3:+81380832 | None:intergenic |
| AAGTGAACCTAGTTGAACAG+GGG | 0.722747 | 7_3:+81377775 | None:intergenic |
| TGTTATGGAACCGCCCAATG+CGG | 0.735755 | 7_3:+81379836 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTGTTTTATTTTTTGT+AGG | - | chr7_3:81378582-81378601 | Msa1129400:intron | 10.0% |
| !!! | TTAGTTATCTCATATTTTTA+AGG | - | chr7_3:81378175-81378194 | Msa1129400:intron | 15.0% |
| !!! | ATTAAGTTGTTTATCTAAAT+AGG | - | chr7_3:81378385-81378404 | Msa1129400:intron | 15.0% |
| !!! | TTAAGTTGTTTATCTAAATA+GGG | - | chr7_3:81378386-81378405 | Msa1129400:intron | 15.0% |
| !! | AATTTCAAAAAGAAAAACTA+CGG | + | chr7_3:81379274-81379293 | None:intergenic | 15.0% |
| !! | TTGTGAATAGAAATTATTAA+TGG | + | chr7_3:81379352-81379371 | None:intergenic | 15.0% |
| !! | TATACAAAGAAAACTAAATT+TGG | - | chr7_3:81379564-81379583 | Msa1129400:CDS | 15.0% |
| !! | AAGTAAAGAAGAAAAAATAA+AGG | + | chr7_3:81380111-81380130 | None:intergenic | 15.0% |
| !! | ATAGTTAATAAGTTATCTTA+AGG | - | chr7_3:81381074-81381093 | Msa1129400:intron | 15.0% |
| !! | CATCAATCATAAAAATAAAA+TGG | + | chr7_3:81381314-81381333 | None:intergenic | 15.0% |
| !!! | AATTGAATTTGCAGTTTTTA+AGG | + | chr7_3:81377578-81377597 | None:intergenic | 20.0% |
| !!! | AAGCATTATAACAAAGATTT+TGG | - | chr7_3:81378846-81378865 | Msa1129400:intron | 20.0% |
| !! | ATTTCAAAAAGAAAAACTAC+GGG | + | chr7_3:81379273-81379292 | None:intergenic | 20.0% |
| !! | TTGCTTGATAGAATTTATTT+AGG | - | chr7_3:81379920-81379939 | Msa1129400:intron | 20.0% |
| !! | CTCAATTCTGATATTATTAT+AGG | - | chr7_3:81380808-81380827 | Msa1129400:CDS | 20.0% |
| !! | ATTCTGATATTATTATAGGA+TGG | - | chr7_3:81380812-81380831 | Msa1129400:CDS | 20.0% |
| !! | TTCTGATATTATTATAGGAT+GGG | - | chr7_3:81380813-81380832 | Msa1129400:CDS | 20.0% |
| !!! | AGTTATCTTAAGGTTAATTT+TGG | - | chr7_3:81381084-81381103 | Msa1129400:intron | 20.0% |
| !!! | ATTCAGACTTTAAAAAAACA+CGG | + | chr7_3:81381200-81381219 | None:intergenic | 20.0% |
| !!! | TTTATTTTTATGATTGATGC+TGG | - | chr7_3:81381315-81381334 | Msa1129400:intron | 20.0% |
| ! | AATCAGAAGCAATAATGTAA+TGG | + | chr7_3:81377919-81377938 | None:intergenic | 25.0% |
| ! | ATTACATTATTGCTTCTGAT+TGG | - | chr7_3:81377918-81377937 | Msa1129400:intron | 25.0% |
| ! | ATACATAATGACAGAATGAT+TGG | + | chr7_3:81378095-81378114 | None:intergenic | 25.0% |
| !!! | GGTCTTTGAATTGTTATTTT+CGG | - | chr7_3:81378708-81378727 | Msa1129400:intron | 25.0% |
| !!! | ATTGTTATTTTCGGTTATAC+TGG | - | chr7_3:81378717-81378736 | Msa1129400:intron | 25.0% |
| !! | AGCTGAATTTTAAATTTTGC+AGG | - | chr7_3:81378936-81378955 | Msa1129400:CDS | 25.0% |
| ! | AGCATACAAAACATAAATGA+CGG | + | chr7_3:81378987-81379006 | None:intergenic | 25.0% |
| !! | GCTTTTATGAATGATGAAAA+TGG | - | chr7_3:81379308-81379327 | Msa1129400:intron | 25.0% |
| ! | AATTCTATAGATGCTTAAGT+AGG | - | chr7_3:81379410-81379429 | Msa1129400:intron | 25.0% |
| ! | AATTCCAATCATTCAAGATT+TGG | - | chr7_3:81379443-81379462 | Msa1129400:intron | 25.0% |
| ! | ATTCCAATCATTCAAGATTT+GGG | - | chr7_3:81379444-81379463 | Msa1129400:intron | 25.0% |
| !! | TTAGGTTAGTTCTTATTTCT+TGG | - | chr7_3:81379610-81379629 | Msa1129400:CDS | 25.0% |
| ! | TCTGATTTAGTCAATCTAAA+AGG | + | chr7_3:81379669-81379688 | None:intergenic | 25.0% |
| ! | TAAGTTTATTGTCTGAATTG+CGG | + | chr7_3:81379821-81379840 | None:intergenic | 25.0% |
| ! | AAACTTATCAAAGAGAAACT+TGG | - | chr7_3:81379834-81379853 | Msa1129400:CDS | 25.0% |
| ! | AATTCTATCAAGCAAAAACA+AGG | + | chr7_3:81379915-81379934 | None:intergenic | 25.0% |
| ! | GTTTATAAGACGAAACAAAA+GGG | + | chr7_3:81379995-81380014 | None:intergenic | 25.0% |
| ! | TCTCAAGAAAATATAACATC+AGG | + | chr7_3:81380074-81380093 | None:intergenic | 25.0% |
| ! | GTGGGATATATATTTATTTG+TGG | + | chr7_3:81380388-81380407 | None:intergenic | 25.0% |
| !! | ATAATAGTTAAGAGCATATG+AGG | + | chr7_3:81380488-81380507 | None:intergenic | 25.0% |
| ! | CAAATAAGCATAGTGATATT+TGG | + | chr7_3:81380570-81380589 | None:intergenic | 25.0% |
| ! | TTTGTGCGTGTAATATATAT+TGG | - | chr7_3:81380674-81380693 | Msa1129400:CDS | 25.0% |
| !!! | AATGCGCTTATTTTGTTTTA+TGG | - | chr7_3:81381114-81381133 | Msa1129400:intron | 25.0% |
| !!! | TCCTTTTAAGGACTATTTAT+TGG | - | chr7_3:81381251-81381270 | Msa1129400:intron | 25.0% |
| !!! | CCTTTTAAGGACTATTTATT+GGG | - | chr7_3:81381252-81381271 | Msa1129400:intron | 25.0% |
| ! | AAACAAATATGGACAGAAAA+GGG | - | chr7_3:81381288-81381307 | Msa1129400:intron | 25.0% |
| AGACGAATTGAGATTTGATT+GGG | + | chr7_3:81377368-81377387 | None:intergenic | 30.0% | |
| AAGACGAATTGAGATTTGAT+TGG | + | chr7_3:81377369-81377388 | None:intergenic | 30.0% | |
| ATCTTTCTTCCAATTTGTGT+CGG | - | chr7_3:81377535-81377554 | Msa1129400:three_prime_UTR | 30.0% | |
| !!! | TTTTTTTAACCTCAGTATCC+TGG | - | chr7_3:81377646-81377665 | Msa1129400:three_prime_UTR | 30.0% |
| !! | GAAATTCTTAGCTTTTCTGT+TGG | + | chr7_3:81377836-81377855 | None:intergenic | 30.0% |
| AAGCTAAGAATTTCCATTAC+TGG | - | chr7_3:81377842-81377861 | Msa1129400:CDS | 30.0% | |
| TAATTGCCTCAAAGTTACTA+AGG | - | chr7_3:81378012-81378031 | Msa1129400:intron | 30.0% | |
| TAATGACAGAATGATTGGAT+TGG | + | chr7_3:81378090-81378109 | None:intergenic | 30.0% | |
| TTTCCAACTGTTTGAATTCA+GGG | + | chr7_3:81378637-81378656 | None:intergenic | 30.0% | |
| TGGTTATTCATTTGTACACT+CGG | - | chr7_3:81378737-81378756 | Msa1129400:intron | 30.0% | |
| ! | CACAGATAAATTTGAGATGT+GGG | - | chr7_3:81379133-81379152 | Msa1129400:intron | 30.0% |
| ! | ACAGATAAATTTGAGATGTG+GGG | - | chr7_3:81379134-81379153 | Msa1129400:intron | 30.0% |
| TTCTTTGTATACAACCACAT+AGG | + | chr7_3:81379555-81379574 | None:intergenic | 30.0% | |
| ! | GCTTTCTGTATATCTGTTTT+AGG | - | chr7_3:81379592-81379611 | Msa1129400:CDS | 30.0% |
| AATACCTTCAACTTCATTGT+TGG | + | chr7_3:81379867-81379886 | None:intergenic | 30.0% | |
| TCCATTAGTTCAGTTTATTG+TGG | - | chr7_3:81379952-81379971 | Msa1129400:intron | 30.0% | |
| TCCACAATAAACTGAACTAA+TGG | + | chr7_3:81379956-81379975 | None:intergenic | 30.0% | |
| GGTTTATAAGACGAAACAAA+AGG | + | chr7_3:81379996-81380015 | None:intergenic | 30.0% | |
| GAAAATGATCAAATATGGCA+GGG | + | chr7_3:81380017-81380036 | None:intergenic | 30.0% | |
| TGAGGGAAAATGATCAAATA+TGG | + | chr7_3:81380022-81380041 | None:intergenic | 30.0% | |
| ATTCTCACTTAATACACAGT+GGG | + | chr7_3:81380406-81380425 | None:intergenic | 30.0% | |
| ATCATGTATTGCAGAACAAT+TGG | - | chr7_3:81380611-81380630 | Msa1129400:CDS | 30.0% | |
| TCATGTATTGCAGAACAATT+GGG | - | chr7_3:81380612-81380631 | Msa1129400:CDS | 30.0% | |
| ! | GGCTTAGAATTACATACTTT+TGG | - | chr7_3:81380834-81380853 | Msa1129400:CDS | 30.0% |
| ! | ACTTAAACGTTTCAAGTGAA+TGG | - | chr7_3:81381013-81381032 | Msa1129400:intron | 30.0% |
| !!! | TGCTATTTTGAAGAGAACTT+TGG | - | chr7_3:81381049-81381068 | Msa1129400:intron | 30.0% |
| !! | AAGTCGTTTTCTTCCTTTTA+AGG | - | chr7_3:81381239-81381258 | Msa1129400:intron | 30.0% |
| CCCAATAAATAGTCCTTAAA+AGG | + | chr7_3:81381255-81381274 | None:intergenic | 30.0% | |
| CAAACAAATATGGACAGAAA+AGG | - | chr7_3:81381287-81381306 | Msa1129400:intron | 30.0% | |
| AGTTCATAACTAAAGGACAA+TGG | - | chr7_3:81381340-81381359 | Msa1129400:five_prime_UTR | 30.0% | |
| ACAAGAATGAGAATTGAGAG+AGG | + | chr7_3:81377414-81377433 | None:intergenic | 35.0% | |
| TGATTCATATTTGCGCAGAA+TGG | - | chr7_3:81377745-81377764 | Msa1129400:exon | 35.0% | |
| GATTCATATTTGCGCAGAAT+GGG | - | chr7_3:81377746-81377765 | Msa1129400:exon | 35.0% | |
| AGTTCCATCTTGTTGATCTT+AGG | - | chr7_3:81377981-81378000 | Msa1129400:intron | 35.0% | |
| GTTCCATCTTGTTGATCTTA+GGG | - | chr7_3:81377982-81378001 | Msa1129400:intron | 35.0% | |
| TAACCCTAAGATCAACAAGA+TGG | + | chr7_3:81377988-81378007 | None:intergenic | 35.0% | |
| TCTTGTTGATCTTAGGGTTA+TGG | - | chr7_3:81377988-81378007 | Msa1129400:intron | 35.0% | |
| TTTCAATCTTGCTGCTGATA+TGG | - | chr7_3:81378048-81378067 | Msa1129400:intron | 35.0% | |
| TTCAATCTTGCTGCTGATAT+GGG | - | chr7_3:81378049-81378068 | Msa1129400:intron | 35.0% | |
| TCAATATGATTGAAGCTGCT+AGG | - | chr7_3:81378134-81378153 | Msa1129400:intron | 35.0% | |
| ATTGAAGCTGCTAGGATTAA+TGG | - | chr7_3:81378142-81378161 | Msa1129400:intron | 35.0% | |
| ! | CTAGGATTAATGGTGTTAAG+AGG | - | chr7_3:81378152-81378171 | Msa1129400:intron | 35.0% |
| AGCAGTACAAATGTTTGTGT+TGG | + | chr7_3:81378224-81378243 | None:intergenic | 35.0% | |
| AGTCGTATGAGAGAACATTA+TGG | - | chr7_3:81378413-81378432 | Msa1129400:intron | 35.0% | |
| TGTCGATGAGTAAACATATG+TGG | - | chr7_3:81378511-81378530 | Msa1129400:intron | 35.0% | |
| ATGAGTAAACATATGTGGTG+TGG | - | chr7_3:81378516-81378535 | Msa1129400:intron | 35.0% | |
| TAAACATATGTGGTGTGGTA+TGG | - | chr7_3:81378521-81378540 | Msa1129400:intron | 35.0% | |
| TGGTATGGTGTCTATTTCAA+CGG | - | chr7_3:81378536-81378555 | Msa1129400:intron | 35.0% | |
| GTTTCCAACTGTTTGAATTC+AGG | + | chr7_3:81378638-81378657 | None:intergenic | 35.0% | |
| GGTTATTCATTTGTACACTC+GGG | - | chr7_3:81378738-81378757 | Msa1129400:intron | 35.0% | |
| TACCTTTCCATGTACCAAAA+GGG | + | chr7_3:81378911-81378930 | None:intergenic | 35.0% | |
| ATACCTTTCCATGTACCAAA+AGG | + | chr7_3:81378912-81378931 | None:intergenic | 35.0% | |
| CCACATCTCAAATTTATCTG+TGG | + | chr7_3:81379135-81379154 | None:intergenic | 35.0% | |
| ! | CCACAGATAAATTTGAGATG+TGG | - | chr7_3:81379132-81379151 | Msa1129400:intron | 35.0% |
| TTCAACACACTCATCAATGA+AGG | + | chr7_3:81379186-81379205 | None:intergenic | 35.0% | |
| TTCATTGATGAGTGTGTTGA+AGG | - | chr7_3:81379185-81379204 | Msa1129400:intron | 35.0% | |
| AAGCCCAAATCTTGAATGAT+TGG | + | chr7_3:81379450-81379469 | None:intergenic | 35.0% | |
| GATTGACTAAATCAGACTTC+CGG | - | chr7_3:81379673-81379692 | Msa1129400:intron | 35.0% | |
| ATTGACTAAATCAGACTTCC+GGG | - | chr7_3:81379674-81379693 | Msa1129400:intron | 35.0% | |
| GAATATTGGAAGTGACGAAA+TGG | - | chr7_3:81379704-81379723 | Msa1129400:intron | 35.0% | |
| AATGGTTAGCATGAATGAGA+TGG | - | chr7_3:81379722-81379741 | Msa1129400:intron | 35.0% | |
| TTATCAAAGAGAAACTTGGC+TGG | - | chr7_3:81379838-81379857 | Msa1129400:CDS | 35.0% | |
| TATCAAAGAGAAACTTGGCT+GGG | - | chr7_3:81379839-81379858 | Msa1129400:CDS | 35.0% | |
| GGAAAATGATCAAATATGGC+AGG | + | chr7_3:81380018-81380037 | None:intergenic | 35.0% | |
| TTCCCTCAAGAAAAGAGTAA+CGG | - | chr7_3:81380034-81380053 | Msa1129400:intron | 35.0% | |
| ! | TTCCGTTACTCTTTTCTTGA+GGG | + | chr7_3:81380039-81380058 | None:intergenic | 35.0% |
| ! | ATTCCGTTACTCTTTTCTTG+AGG | + | chr7_3:81380040-81380059 | None:intergenic | 35.0% |
| TTTGACATGTGAATCAGTGT+TGG | + | chr7_3:81380247-81380266 | None:intergenic | 35.0% | |
| CATTCTCACTTAATACACAG+TGG | + | chr7_3:81380407-81380426 | None:intergenic | 35.0% | |
| GTGTATTAAGTGAGAATGCA+AGG | - | chr7_3:81380409-81380428 | Msa1129400:intron | 35.0% | |
| TATTAAGTGAGAATGCAAGG+AGG | - | chr7_3:81380412-81380431 | Msa1129400:intron | 35.0% | |
| !!! | GTTAGTTTTGACAGATCATG+TGG | + | chr7_3:81380464-81380483 | None:intergenic | 35.0% |
| ! | TTTTCCATAATCGACAACAC+TGG | + | chr7_3:81380536-81380555 | None:intergenic | 35.0% |
| AGAATACAGACCCATTAACA+CGG | + | chr7_3:81380721-81380740 | None:intergenic | 35.0% | |
| ATTCGTTGTTTGTGCTTCAT+TGG | - | chr7_3:81380748-81380767 | Msa1129400:CDS | 35.0% | |
| ! | AACGTTTCAAGTGAATGGTT+AGG | - | chr7_3:81381018-81381037 | Msa1129400:intron | 35.0% |
| CATCGACAGACAAACAAATA+TGG | - | chr7_3:81381277-81381296 | Msa1129400:intron | 35.0% | |
| GCTGGAAAGTTCATAACTAA+AGG | - | chr7_3:81381333-81381352 | Msa1129400:five_prime_UTR | 35.0% | |
| CAGTACTATGTCATTAGACC+AGG | + | chr7_3:81377667-81377686 | None:intergenic | 40.0% | |
| !! | AGTTCTGGAACAAACGACTA+TGG | - | chr7_3:81377770-81377789 | Msa1129400:CDS | 40.0% |
| ! | AGCTTTTCTGTTGGCCAATA+TGG | + | chr7_3:81377827-81377846 | None:intergenic | 40.0% |
| AGAATTTCCATTACTGGTGC+TGG | - | chr7_3:81377848-81377867 | Msa1129400:CDS | 40.0% | |
| AGCAATAATGTAATGGCCCT+CGG | + | chr7_3:81377912-81377931 | None:intergenic | 40.0% | |
| CGACATCCTTAGTAACTTTG+AGG | + | chr7_3:81378021-81378040 | None:intergenic | 40.0% | |
| TTTGAGAGAGCTTACGGATA+TGG | - | chr7_3:81378245-81378264 | Msa1129400:intron | 40.0% | |
| ATGTATCTTACCCCACTTAG+TGG | - | chr7_3:81378449-81378468 | Msa1129400:intron | 40.0% | |
| TGTATCTTACCCCACTTAGT+GGG | - | chr7_3:81378450-81378469 | Msa1129400:intron | 40.0% | |
| ! | AAGCTTTATCCCACTAAGTG+GGG | + | chr7_3:81378462-81378481 | None:intergenic | 40.0% |
| ! | CAAGCTTTATCCCACTAAGT+GGG | + | chr7_3:81378463-81378482 | None:intergenic | 40.0% |
| CTACCCTGAATTCAAACAGT+TGG | - | chr7_3:81378631-81378650 | Msa1129400:intron | 40.0% | |
| GGAAACAAATGTGAGCTTGA+AGG | - | chr7_3:81378652-81378671 | Msa1129400:intron | 40.0% | |
| AACAAATGTGAGCTTGAAGG+AGG | - | chr7_3:81378655-81378674 | Msa1129400:intron | 40.0% | |
| TTCATTTGTACACTCGGGTT+AGG | - | chr7_3:81378743-81378762 | Msa1129400:intron | 40.0% | |
| CAAAAGGGCCGTATATGTTA+TGG | + | chr7_3:81378896-81378915 | None:intergenic | 40.0% | |
| ! | CATAACATATACGGCCCTTT+TGG | - | chr7_3:81378894-81378913 | Msa1129400:CDS | 40.0% |
| CTGTGGAAGTAAGTGTCTTT+CGG | + | chr7_3:81379118-81379137 | None:intergenic | 40.0% | |
| ! | AAATTTGAGATGTGGGGAGA+TGG | - | chr7_3:81379140-81379159 | Msa1129400:intron | 40.0% |
| ACACTCATCAATGAAGGTGA+AGG | + | chr7_3:81379180-81379199 | None:intergenic | 40.0% | |
| !! | CAGGTCTTAAGTTTTGTGAG+AGG | + | chr7_3:81379532-81379551 | None:intergenic | 40.0% |
| AAACTTAAGACCTGCCTATG+TGG | - | chr7_3:81379538-81379557 | Msa1129400:CDS | 40.0% | |
| TTGTATACAACCACATAGGC+AGG | + | chr7_3:81379551-81379570 | None:intergenic | 40.0% | |
| TCGTCACTTCCAATATTCAC+TGG | + | chr7_3:81379702-81379721 | None:intergenic | 40.0% | |
| CACCAACACTTTCCTTCATA+AGG | - | chr7_3:81380199-81380218 | Msa1129400:intron | 40.0% | |
| ! | CACCTTATGAAGGAAAGTGT+TGG | + | chr7_3:81380204-81380223 | None:intergenic | 40.0% |
| ATGAGCCTTAGACATGACTT+CGG | - | chr7_3:81380314-81380333 | Msa1129400:intron | 40.0% | |
| TGACAGATCATGTGGTTGTA+TGG | + | chr7_3:81380456-81380475 | None:intergenic | 40.0% | |
| ! | TAGACCAGTGTTGTCGATTA+TGG | - | chr7_3:81380529-81380548 | Msa1129400:intron | 40.0% |
| CACGGACAGTGTCTAAATAA+AGG | + | chr7_3:81380703-81380722 | None:intergenic | 40.0% | |
| TTAGACACTGTCCGTGTTAA+TGG | - | chr7_3:81380707-81380726 | Msa1129400:CDS | 40.0% | |
| TAGACACTGTCCGTGTTAAT+GGG | - | chr7_3:81380708-81380727 | Msa1129400:CDS | 40.0% | |
| !! | GGTGTTGATGTAACATCCTA+TGG | - | chr7_3:81380890-81380909 | Msa1129400:CDS | 40.0% |
| ATCCTATGGATCATCCAAAG+TGG | - | chr7_3:81380904-81380923 | Msa1129400:CDS | 40.0% | |
| TACCACTTTGGATGATCCAT+AGG | + | chr7_3:81380909-81380928 | None:intergenic | 40.0% | |
| AAGTGAACCTAGTTGAACAG+GGG | + | chr7_3:81380942-81380961 | None:intergenic | 40.0% | |
| GAAGTGAACCTAGTTGAACA+GGG | + | chr7_3:81380943-81380962 | None:intergenic | 40.0% | |
| CTGTTCAACTAGGTTCACTT+CGG | - | chr7_3:81380942-81380961 | Msa1129400:CDS | 40.0% | |
| TGTTCAACTAGGTTCACTTC+GGG | - | chr7_3:81380943-81380962 | Msa1129400:CDS | 40.0% | |
| ! | TGTTTTATGGTGCCTGTTTG+AGG | - | chr7_3:81381127-81381146 | Msa1129400:intron | 40.0% |
| CTTTCACTCCTCTCTTCATC+AGG | - | chr7_3:81377386-81377405 | Msa1129400:three_prime_UTR | 45.0% | |
| GAATGCGAACCGACACAAAT+TGG | + | chr7_3:81377547-81377566 | None:intergenic | 45.0% | |
| GTCATTAGACCAGGATACTG+AGG | + | chr7_3:81377658-81377677 | None:intergenic | 45.0% | |
| ! | ATGGCTCTCTCTCAAGGTTT+TGG | + | chr7_3:81377808-81377827 | None:intergenic | 45.0% |
| ACCTTGAGAGAGAGCCATAT+TGG | - | chr7_3:81377810-81377829 | Msa1129400:CDS | 45.0% | |
| ! | ATTTCCATTACTGGTGCTGG+TGG | - | chr7_3:81377851-81377870 | Msa1129400:CDS | 45.0% |
| AAATCCACCAGCACCAGTAA+TGG | + | chr7_3:81377858-81377877 | None:intergenic | 45.0% | |
| GAAGAATGAGCACATGACTG+AGG | - | chr7_3:81377943-81377962 | Msa1129400:intron | 45.0% | |
| AATCTTGCTGCTGATATGGG+TGG | - | chr7_3:81378052-81378071 | Msa1129400:intron | 45.0% | |
| ATCTTGCTGCTGATATGGGT+GGG | - | chr7_3:81378053-81378072 | Msa1129400:intron | 45.0% | |
| ! | CTGCTGTTTGAGAGAGCTTA+CGG | - | chr7_3:81378239-81378258 | Msa1129400:intron | 45.0% |
| ! | CCAAGCTTTATCCCACTAAG+TGG | + | chr7_3:81378464-81378483 | None:intergenic | 45.0% |
| CCACTTAGTGGGATAAAGCT+TGG | - | chr7_3:81378461-81378480 | Msa1129400:intron | 45.0% | |
| AGGGTAGATACAAGCACTAG+AGG | + | chr7_3:81378618-81378637 | None:intergenic | 45.0% | |
| TTCCAGCCACAAGATGCATA+TGG | - | chr7_3:81378792-81378811 | Msa1129400:intron | 45.0% | |
| TCCAGCCACAAGATGCATAT+GGG | - | chr7_3:81378793-81378812 | Msa1129400:intron | 45.0% | |
| ! | TTTGGAATTGAGTGCCGCAT+TGG | - | chr7_3:81378864-81378883 | Msa1129400:CDS | 45.0% |
| ! | TTGGAATTGAGTGCCGCATT+GGG | - | chr7_3:81378865-81378884 | Msa1129400:CDS | 45.0% |
| GGGCGGTTCCATAACATATA+CGG | - | chr7_3:81378885-81378904 | Msa1129400:CDS | 45.0% | |
| ! | TATACGGCCCTTTTGGTACA+TGG | - | chr7_3:81378901-81378920 | Msa1129400:CDS | 45.0% |
| !! | TTCCAATATTCACTGGCTCC+CGG | + | chr7_3:81379695-81379714 | None:intergenic | 45.0% |
| ATACCCATCCAACACATTCC+TGG | - | chr7_3:81379777-81379796 | Msa1129400:intron | 45.0% | |
| GGCTCCAACAATGAAGTTGA+AGG | - | chr7_3:81379860-81379879 | Msa1129400:CDS | 45.0% | |
| ! | GACAGGTTGACACCTTATGA+AGG | + | chr7_3:81380214-81380233 | None:intergenic | 45.0% |
| GTGTTGGAAATGTGTCTGAC+AGG | + | chr7_3:81380231-81380250 | None:intergenic | 45.0% | |
| ! | TCATGTCTAAGGCTCATCGA+AGG | + | chr7_3:81380311-81380330 | None:intergenic | 45.0% |
| ACATAGCTGACACTCGAGTT+AGG | - | chr7_3:81380344-81380363 | Msa1129400:intron | 45.0% | |
| CTCGAGTTAGGTCTGATAGA+TGG | - | chr7_3:81380356-81380375 | Msa1129400:intron | 45.0% | |
| GGAGGTGAGTGAGTTAATCT+TGG | - | chr7_3:81380430-81380449 | Msa1129400:intron | 45.0% | |
| AGAGCAGCTTGAGAAAGAGA+AGG | - | chr7_3:81380862-81380881 | Msa1129400:CDS | 45.0% | |
| CGAAGTGAACCTAGTTGAAC+AGG | + | chr7_3:81380944-81380963 | None:intergenic | 45.0% | |
| !!! | AAAAATAATATTTTTTCAAT+AGG | + | chr7_3:81380287-81380306 | None:intergenic | 5.0% |
| GAGAGGAACCTGATGAAGAG+AGG | + | chr7_3:81377397-81377416 | None:intergenic | 50.0% | |
| AAGCACACAACACACGCTAG+TGG | + | chr7_3:81377703-81377722 | None:intergenic | 50.0% | |
| TTGCGCAGAATGGGAAGTTC+TGG | - | chr7_3:81377755-81377774 | Msa1129400:CDS | 50.0% | |
| GCCAATATGGCTCTCTCTCA+AGG | + | chr7_3:81377814-81377833 | None:intergenic | 50.0% | |
| CTTAAGACGGCGAGCAATGT+GGG | + | chr7_3:81377888-81377907 | None:intergenic | 50.0% | |
| TCTTAAGACGGCGAGCAATG+TGG | + | chr7_3:81377889-81377908 | None:intergenic | 50.0% | |
| AATGGCCCTCGGTCTTAAGA+CGG | + | chr7_3:81377901-81377920 | None:intergenic | 50.0% | |
| GACCAACAACAAACCTCAGC+AGG | + | chr7_3:81378692-81378711 | None:intergenic | 50.0% | |
| TCCAGCCCATATGCATCTTG+TGG | + | chr7_3:81378801-81378820 | None:intergenic | 50.0% | |
| TGTTATGGAACCGCCCAATG+CGG | + | chr7_3:81378881-81378900 | None:intergenic | 50.0% | |
| ! | GGCCCTTTTGGTACATGGAA+AGG | - | chr7_3:81378906-81378925 | Msa1129400:CDS | 50.0% |
| !! | TTTGTTGTTCGTCGCACAGG+TGG | - | chr7_3:81379065-81379084 | Msa1129400:intron | 50.0% |
| GTCTTTCGGCAAAAAGCAGC+AGG | + | chr7_3:81379104-81379123 | None:intergenic | 50.0% | |
| ! | AGTGTGTTGAAGGCGTGCTT+AGG | - | chr7_3:81379195-81379214 | Msa1129400:intron | 50.0% |
| CAGTAGACACGAGATCAGCA+TGG | + | chr7_3:81379226-81379245 | None:intergenic | 50.0% | |
| TTCCGGGAGCCAGTGAATAT+TGG | - | chr7_3:81379690-81379709 | Msa1129400:intron | 50.0% | |
| GGACCAGGAATGTGTTGGAT+GGG | + | chr7_3:81379783-81379802 | None:intergenic | 50.0% | |
| TGGACCAGGAATGTGTTGGA+TGG | + | chr7_3:81379784-81379803 | None:intergenic | 50.0% | |
| CAACACATTCCTGGTCCAGA+GGG | - | chr7_3:81379786-81379805 | Msa1129400:intron | 50.0% | |
| CCAAGCCGAAGTCATGTCTA+AGG | + | chr7_3:81380322-81380341 | None:intergenic | 50.0% | |
| CCTTAGACATGACTTCGGCT+TGG | - | chr7_3:81380319-81380338 | Msa1129400:intron | 50.0% | |
| CAGCTTGAGAAAGAGAAGGC+TGG | - | chr7_3:81380866-81380885 | Msa1129400:CDS | 50.0% | |
| CTTGAGAAAGAGAAGGCTGG+AGG | - | chr7_3:81380869-81380888 | Msa1129400:CDS | 50.0% | |
| GGCTTGAGTCGATACCACTT+TGG | + | chr7_3:81380921-81380940 | None:intergenic | 50.0% | |
| ACTCAAGCCCCTGTTCAACT+AGG | - | chr7_3:81380932-81380951 | Msa1129400:CDS | 50.0% | |
| GCTGCAGATGGCAATGAATG+AGG | - | chr7_3:81380965-81380984 | Msa1129400:intron | 50.0% | |
| ! | TGCCTGTTTGAGGCAGTACT+TGG | - | chr7_3:81381137-81381156 | Msa1129400:intron | 50.0% |
| ! | CACCAAGTACTGCCTCAAAC+AGG | + | chr7_3:81381142-81381161 | None:intergenic | 50.0% |
| ! | CAACACACGCTAGTGGACGT+GGG | + | chr7_3:81377696-81377715 | None:intergenic | 55.0% |
| ! | ACAACACACGCTAGTGGACG+TGG | + | chr7_3:81377697-81377716 | None:intergenic | 55.0% |
| TGCTGCTGATATGGGTGGGA+TGG | - | chr7_3:81378057-81378076 | Msa1129400:intron | 55.0% | |
| GCTGCTGATATGGGTGGGAT+GGG | - | chr7_3:81378058-81378077 | Msa1129400:intron | 55.0% | |
| ACAACAAACCTCAGCAGGCC+AGG | + | chr7_3:81378687-81378706 | None:intergenic | 55.0% | |
| !! | GGCCTGCTGAGGTTTGTTGT+TGG | - | chr7_3:81378687-81378706 | Msa1129400:intron | 55.0% |
| GCCCATATGCATCTTGTGGC+TGG | + | chr7_3:81378797-81378816 | None:intergenic | 55.0% | |
| GCCACAAGATGCATATGGGC+TGG | - | chr7_3:81378797-81378816 | Msa1129400:intron | 55.0% | |
| ! | GAATTGAGTGCCGCATTGGG+CGG | - | chr7_3:81378868-81378887 | Msa1129400:CDS | 55.0% |
| !! | CGCTTTGTTGTTCGTCGCAC+AGG | - | chr7_3:81379062-81379081 | Msa1129400:intron | 55.0% |
| TTGTTCGTCGCACAGGTGGA+AGG | - | chr7_3:81379069-81379088 | Msa1129400:intron | 55.0% | |
| TGTTCGTCGCACAGGTGGAA+GGG | - | chr7_3:81379070-81379089 | Msa1129400:intron | 55.0% | |
| TCGCACAGGTGGAAGGGAAA+AGG | - | chr7_3:81379076-81379095 | Msa1129400:intron | 55.0% | |
| CCTCTGGACCAGGAATGTGT+TGG | + | chr7_3:81379788-81379807 | None:intergenic | 55.0% | |
| CCAACACATTCCTGGTCCAG+AGG | - | chr7_3:81379785-81379804 | Msa1129400:intron | 55.0% | |
| ! | GACACGAGGGCACATGGGAT+GGG | + | chr7_3:81377491-81377510 | None:intergenic | 60.0% |
| GATACGACATACCCCCCACG+AGG | + | chr7_3:81377518-81377537 | None:intergenic | 60.0% | |
| ! | CACGCTAGTGGACGTGGGAT+TGG | + | chr7_3:81377691-81377710 | None:intergenic | 60.0% |
| AAGACGGCGAGCAATGTGGG+AGG | + | chr7_3:81377885-81377904 | None:intergenic | 60.0% | |
| TGCTCGCCGTCTTAAGACCG+AGG | - | chr7_3:81377892-81377911 | Msa1129400:intron | 60.0% | |
| GCTCGCCGTCTTAAGACCGA+GGG | - | chr7_3:81377893-81377912 | Msa1129400:intron | 60.0% | |
| GCTTGAAGGAGGCTGATGCC+TGG | - | chr7_3:81378666-81378685 | Msa1129400:intron | 60.0% | |
| GGTTCACTTCGGGCTGCAGA+TGG | - | chr7_3:81380953-81380972 | Msa1129400:CDS | 60.0% | |
| ! | CGACACGAGGGCACATGGGA+TGG | + | chr7_3:81377492-81377511 | None:intergenic | 65.0% |
| TCCCATGTGCCCTCGTGTCG+TGG | - | chr7_3:81377492-81377511 | Msa1129400:three_prime_UTR | 65.0% | |
| ! | GCCACGACACGAGGGCACAT+GGG | + | chr7_3:81377496-81377515 | None:intergenic | 65.0% |
| CCACGAACACCCTCTGGACC+AGG | + | chr7_3:81379798-81379817 | None:intergenic | 65.0% | |
| !! | CCTGGTCCAGAGGGTGTTCG+TGG | - | chr7_3:81379795-81379814 | Msa1129400:intron | 65.0% |
| TTGCGGCCACGAACACCCTC+TGG | + | chr7_3:81379804-81379823 | None:intergenic | 65.0% | |
| ! | GGCCACGACACGAGGGCACA+TGG | + | chr7_3:81377497-81377516 | None:intergenic | 70.0% |
| CCCACGAGGCCACGACACGA+GGG | + | chr7_3:81377504-81377523 | None:intergenic | 70.0% | |
| CCCTCGTGTCGTGGCCTCGT+GGG | - | chr7_3:81377501-81377520 | Msa1129400:three_prime_UTR | 70.0% | |
| CCTCGTGTCGTGGCCTCGTG+GGG | - | chr7_3:81377502-81377521 | Msa1129400:three_prime_UTR | 70.0% | |
| CTCGTGTCGTGGCCTCGTGG+GGG | - | chr7_3:81377503-81377522 | Msa1129400:three_prime_UTR | 70.0% | |
| TCGTGTCGTGGCCTCGTGGG+GGG | - | chr7_3:81377504-81377523 | Msa1129400:three_prime_UTR | 70.0% | |
| GGCTGATGCCTGGCCTGCTG+AGG | - | chr7_3:81378676-81378695 | Msa1129400:intron | 70.0% | |
| GCCCTCGTGTCGTGGCCTCG+TGG | - | chr7_3:81377500-81377519 | Msa1129400:three_prime_UTR | 75.0% | |
| CCCCACGAGGCCACGACACG+AGG | + | chr7_3:81377505-81377524 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 81377360 | 81381376 | 81377360 | ID=Msa1129400;Name=Msa1129400 |
| chr7_3 | mRNA | 81377360 | 81381376 | 81377360 | ID=Msa1129400-mRNA-1;Parent=Msa1129400;Name=Msa1129400-mRNA-1;_AED=0.09;_eAED=0.09;_QI=49|1|1|1|0.83|0.71|7|391|376 |
| chr7_3 | exon | 81377360 | 81377906 | 81377360 | ID=Msa1129400-mRNA-1:exon:23604;Parent=Msa1129400-mRNA-1 |
| chr7_3 | exon | 81378855 | 81379062 | 81378855 | ID=Msa1129400-mRNA-1:exon:23603;Parent=Msa1129400-mRNA-1 |
| chr7_3 | exon | 81379520 | 81379652 | 81379520 | ID=Msa1129400-mRNA-1:exon:23602;Parent=Msa1129400-mRNA-1 |
| chr7_3 | exon | 81379809 | 81379938 | 81379809 | ID=Msa1129400-mRNA-1:exon:23601;Parent=Msa1129400-mRNA-1 |
| chr7_3 | exon | 81380039 | 81380132 | 81380039 | ID=Msa1129400-mRNA-1:exon:23600;Parent=Msa1129400-mRNA-1 |
| chr7_3 | exon | 81380563 | 81380973 | 81380563 | ID=Msa1129400-mRNA-1:exon:23599;Parent=Msa1129400-mRNA-1 |
| chr7_3 | exon | 81381329 | 81381376 | 81381329 | ID=Msa1129400-mRNA-1:exon:23598;Parent=Msa1129400-mRNA-1 |
| chr7_3 | five_prime_UTR | 81381329 | 81381376 | 81381329 | ID=Msa1129400-mRNA-1:five_prime_utr;Parent=Msa1129400-mRNA-1 |
| chr7_3 | five_prime_UTR | 81380973 | 81380973 | 81380973 | ID=Msa1129400-mRNA-1:five_prime_utr;Parent=Msa1129400-mRNA-1 |
| chr7_3 | CDS | 81380563 | 81380972 | 81380563 | ID=Msa1129400-mRNA-1:cds;Parent=Msa1129400-mRNA-1 |
| chr7_3 | CDS | 81380039 | 81380132 | 81380039 | ID=Msa1129400-mRNA-1:cds;Parent=Msa1129400-mRNA-1 |
| chr7_3 | CDS | 81379809 | 81379938 | 81379809 | ID=Msa1129400-mRNA-1:cds;Parent=Msa1129400-mRNA-1 |
| chr7_3 | CDS | 81379520 | 81379652 | 81379520 | ID=Msa1129400-mRNA-1:cds;Parent=Msa1129400-mRNA-1 |
| chr7_3 | CDS | 81378855 | 81379062 | 81378855 | ID=Msa1129400-mRNA-1:cds;Parent=Msa1129400-mRNA-1 |
| chr7_3 | CDS | 81377751 | 81377906 | 81377751 | ID=Msa1129400-mRNA-1:cds;Parent=Msa1129400-mRNA-1 |
| chr7_3 | three_prime_UTR | 81377360 | 81377750 | 81377360 | ID=Msa1129400-mRNA-1:three_prime_utr;Parent=Msa1129400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
