Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038360 | AHK12705.1 | 99.468 | 376 | 2 | 0 | 1 | 376 | 1 | 376 | 0.0 | 786 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038360 | sp|A2Z7B3|GME1_ORYSI | 91.005 | 378 | 32 | 1 | 1 | 376 | 1 | 378 | 0.0 | 731 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038360 | W8G2X4 | 99.468 | 376 | 2 | 0 | 1 | 376 | 1 | 376 | 0.0 | 786 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046930 | Msa1038360 | 0.933316 | 2.261319e-95 | -8.615850e-47 |
| Msa0650650 | Msa1038360 | 0.803064 | 4.166720e-49 | -8.615850e-47 |
| Msa0650740 | Msa1038360 | 0.807095 | 5.975250e-50 | -8.615850e-47 |
| Msa1038360 | Msa1129400 | 0.956388 | 3.321840e-114 | -8.615850e-47 |
| Msa1038360 | Msa1442220 | -0.812357 | 4.415161e-51 | -8.615850e-47 |
| Msa0275400 | Msa1038360 | -0.812741 | 3.638818e-51 | -8.615850e-47 |
| Msa0575990 | Msa1038360 | -0.813182 | 2.913023e-51 | -8.615850e-47 |
| Msa0576100 | Msa1038360 | -0.820787 | 5.703524e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038360 | MtrunA17_Chr7g0274131 | 98.674 | 377 | 4 | 1 | 1 | 376 | 1 | 377 | 0.0 | 778 |
| Msa1038360 | MtrunA17_Chr1g0190771 | 91.777 | 377 | 30 | 1 | 1 | 376 | 1 | 377 | 0.0 | 734 |
| Msa1038360 | MtrunA17_Chr4g0067461 | 28.571 | 315 | 207 | 8 | 29 | 339 | 112 | 412 | 1.66e-28 | 115 |
| Msa1038360 | MtrunA17_Chr2g0327981 | 28.115 | 313 | 201 | 9 | 28 | 330 | 38 | 336 | 2.01e-27 | 110 |
| Msa1038360 | MtrunA17_Chr4g0031131 | 27.083 | 336 | 210 | 11 | 15 | 330 | 10 | 330 | 5.85e-27 | 109 |
| Msa1038360 | MtrunA17_Chr1g0195521 | 27.378 | 347 | 212 | 12 | 28 | 348 | 118 | 450 | 7.12e-25 | 105 |
| Msa1038360 | MtrunA17_Chr7g0268991 | 25.309 | 324 | 212 | 11 | 29 | 341 | 16 | 320 | 1.59e-19 | 88.2 |
| Msa1038360 | MtrunA17_Chr1g0182091 | 28.452 | 239 | 153 | 7 | 114 | 345 | 1 | 228 | 1.04e-17 | 81.6 |
| Msa1038360 | MtrunA17_Chr5g0398811 | 24.852 | 338 | 212 | 12 | 28 | 334 | 90 | 416 | 1.95e-16 | 80.5 |
| Msa1038360 | MtrunA17_Chr4g0056941 | 24.118 | 340 | 214 | 11 | 30 | 337 | 95 | 422 | 1.33e-15 | 77.8 |
| Msa1038360 | MtrunA17_Chr4g0011281 | 25.000 | 336 | 210 | 13 | 30 | 334 | 103 | 427 | 1.96e-15 | 77.4 |
| Msa1038360 | MtrunA17_Chr7g0230291 | 24.185 | 368 | 229 | 14 | 3 | 334 | 55 | 408 | 2.91e-14 | 73.9 |
| Msa1038360 | MtrunA17_Chr3g0121661 | 23.757 | 362 | 204 | 14 | 30 | 342 | 101 | 439 | 1.92e-13 | 71.2 |
| Msa1038360 | MtrunA17_Chr4g0073351 | 23.599 | 339 | 215 | 11 | 28 | 334 | 95 | 421 | 3.05e-13 | 70.9 |
| Msa1038360 | MtrunA17_Chr1g0147841 | 26.606 | 327 | 213 | 12 | 26 | 336 | 3 | 318 | 1.07e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1038360 | AT5G28840.2 | 89.655 | 377 | 38 | 1 | 1 | 376 | 1 | 377 | 0.0 | 717 |
| Msa1038360 | AT5G28840.1 | 89.655 | 377 | 38 | 1 | 1 | 376 | 1 | 377 | 0.0 | 717 |
| Msa1038360 | AT3G53520.1 | 29.712 | 313 | 195 | 10 | 26 | 328 | 118 | 415 | 2.08e-29 | 118 |
| Msa1038360 | AT3G46440.2 | 29.582 | 311 | 195 | 9 | 28 | 328 | 29 | 325 | 4.17e-29 | 115 |
| Msa1038360 | AT3G46440.1 | 29.582 | 311 | 195 | 9 | 28 | 328 | 29 | 325 | 4.17e-29 | 115 |
| Msa1038360 | AT3G62830.2 | 28.852 | 305 | 204 | 8 | 28 | 328 | 119 | 414 | 9.31e-29 | 116 |
| Msa1038360 | AT3G62830.1 | 28.852 | 305 | 204 | 8 | 28 | 328 | 119 | 414 | 9.31e-29 | 116 |
| Msa1038360 | AT2G47650.1 | 28.852 | 305 | 204 | 8 | 28 | 328 | 121 | 416 | 1.20e-28 | 116 |
| Msa1038360 | AT5G59290.4 | 28.939 | 311 | 197 | 9 | 28 | 328 | 1 | 297 | 2.98e-28 | 112 |
| Msa1038360 | AT5G59290.1 | 28.939 | 311 | 197 | 9 | 28 | 328 | 30 | 326 | 3.98e-28 | 113 |
| Msa1038360 | AT5G59290.2 | 28.939 | 311 | 197 | 9 | 28 | 328 | 45 | 341 | 5.28e-28 | 113 |
| Msa1038360 | AT5G59290.3 | 28.939 | 311 | 197 | 9 | 28 | 328 | 23 | 319 | 8.16e-28 | 112 |
| Msa1038360 | AT2G28760.1 | 27.974 | 311 | 200 | 9 | 28 | 328 | 31 | 327 | 2.12e-27 | 111 |
| Msa1038360 | AT2G28760.2 | 27.974 | 311 | 200 | 9 | 28 | 328 | 31 | 327 | 2.12e-27 | 111 |
| Msa1038360 | AT2G28760.3 | 27.974 | 311 | 200 | 9 | 28 | 328 | 31 | 327 | 2.12e-27 | 111 |
| Msa1038360 | AT2G28760.4 | 27.974 | 311 | 200 | 9 | 28 | 328 | 62 | 358 | 6.43e-27 | 110 |
| Msa1038360 | AT3G53520.2 | 29.073 | 313 | 195 | 11 | 26 | 328 | 118 | 413 | 1.75e-26 | 110 |
| Msa1038360 | AT2G47650.2 | 28.296 | 311 | 204 | 9 | 28 | 328 | 121 | 422 | 1.76e-26 | 110 |
| Msa1038360 | AT3G53520.4 | 26.923 | 338 | 195 | 12 | 26 | 328 | 118 | 438 | 4.52e-24 | 103 |
| Msa1038360 | AT1G73250.1 | 25.625 | 320 | 202 | 8 | 29 | 334 | 18 | 315 | 1.32e-21 | 94.7 |
| Msa1038360 | AT1G17890.1 | 25.000 | 324 | 217 | 8 | 29 | 343 | 21 | 327 | 1.51e-21 | 94.7 |
| Msa1038360 | AT1G17890.2 | 25.000 | 324 | 217 | 8 | 29 | 343 | 13 | 319 | 1.55e-21 | 94.4 |
| Msa1038360 | AT1G17890.3 | 25.000 | 324 | 217 | 8 | 29 | 343 | 13 | 319 | 1.55e-21 | 94.4 |
| Msa1038360 | AT2G45310.1 | 25.606 | 371 | 218 | 16 | 5 | 334 | 70 | 423 | 2.62e-18 | 86.3 |
| Msa1038360 | AT4G00110.1 | 25.223 | 337 | 208 | 13 | 30 | 334 | 93 | 417 | 1.13e-15 | 78.6 |
| Msa1038360 | AT1G02000.1 | 27.160 | 243 | 151 | 8 | 28 | 255 | 92 | 323 | 1.46e-14 | 75.1 |
| Msa1038360 | AT4G30440.1 | 23.824 | 340 | 213 | 12 | 28 | 334 | 88 | 414 | 8.18e-13 | 69.7 |
| Msa1038360 | AT3G14790.2 | 25.767 | 326 | 217 | 14 | 30 | 340 | 12 | 327 | 1.82e-12 | 69.3 |
| Msa1038360 | AT3G14790.1 | 25.767 | 326 | 217 | 14 | 30 | 340 | 9 | 324 | 1.85e-12 | 69.3 |
| Msa1038360 | AT3G23820.1 | 23.823 | 361 | 221 | 15 | 28 | 348 | 112 | 458 | 2.05e-12 | 68.6 |
| Msa1038360 | AT1G53500.1 | 25.455 | 330 | 213 | 14 | 30 | 340 | 11 | 326 | 5.04e-12 | 67.8 |
Find 125 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTATCTTAAGGTTAATTT+TGG | 0.179489 | 7_1:+75182983 | Msa1038360:three_prime_UTR |
| AAGCATTATAACAAAGATTT+TGG | 0.185817 | 7_1:+75180796 | Msa1038360:CDS |
| GTTTCCAACTGTTTGAATTC+AGG | 0.202846 | 7_1:-75180585 | None:intergenic |
| AGTTCCATCTTGTTGATCTT+AGG | 0.236542 | 7_1:+75179931 | Msa1038360:CDS |
| GGCTTAGAATTACATACTTT+TGG | 0.241436 | 7_1:+75182733 | Msa1038360:CDS |
| CCCAATAAATAGTCCTTAAA+AGG | 0.242441 | 7_1:-75183151 | None:intergenic |
| TTTCAATCTTGCTGCTGATA+TGG | 0.252773 | 7_1:+75179998 | Msa1038360:CDS |
| AAGCTAAGAATTTCCATTAC+TGG | 0.266863 | 7_1:+75179792 | Msa1038360:CDS |
| TCTTGTTGATCTTAGGGTTA+TGG | 0.275401 | 7_1:+75179938 | Msa1038360:CDS |
| CTTTCACTCCTCTCTTCATC+AGG | 0.311196 | 7_1:+75179351 | Msa1038360:five_prime_UTR |
| CATAACATATACGGCCCTTT+TGG | 0.311202 | 7_1:+75180844 | Msa1038360:CDS |
| ATGGCTCTCTCTCAAGGTTT+TGG | 0.316832 | 7_1:-75179755 | None:intergenic |
| ATTGAAGCTGCTAGGATTAA+TGG | 0.333537 | 7_1:+75180092 | Msa1038360:CDS |
| CATCGACAGACAAACAAATA+TGG | 0.338177 | 7_1:+75183176 | Msa1038360:three_prime_UTR |
| CGAAGTGAACCTAGTTGAAC+AGG | 0.343532 | 7_1:-75182840 | None:intergenic |
| TTCAATCTTGCTGCTGATAT+GGG | 0.352299 | 7_1:+75179999 | Msa1038360:CDS |
| GATTGACTAAATCAGACTTC+CGG | 0.353153 | 7_1:+75181624 | Msa1038360:intron |
| AATACCTTCAACTTCATTGT+TGG | 0.357453 | 7_1:-75181815 | None:intergenic |
| AAGAAGAATTGAGATTTGAT+TGG | 0.367864 | 7_1:-75179331 | None:intergenic |
| TTCCGGGAGCCAGTGAATAT+TGG | 0.369817 | 7_1:+75181641 | Msa1038360:CDS |
| TTCCAGCCACAAGATGCATA+TGG | 0.370660 | 7_1:+75180742 | Msa1038360:intron |
| ATTGACTAAATCAGACTTCC+GGG | 0.372161 | 7_1:+75181625 | Msa1038360:CDS |
| ATACATAATGACAGAGTGAT+TGG | 0.389338 | 7_1:-75180042 | None:intergenic |
| ACTTAAACGTTTCAAGTGAA+TGG | 0.390110 | 7_1:+75182912 | Msa1038360:three_prime_UTR |
| GTTCCATCTTGTTGATCTTA+GGG | 0.392044 | 7_1:+75179932 | Msa1038360:CDS |
| ATTACATTATTGCTTCTGAT+TGG | 0.392690 | 7_1:+75179868 | Msa1038360:CDS |
| CAAAAGGGCCGTATATGTTA+TGG | 0.395238 | 7_1:-75180843 | None:intergenic |
| AGAAGAATTGAGATTTGATT+GGG | 0.401982 | 7_1:-75179330 | None:intergenic |
| ACCTTGAGAGAGAGCCATAT+TGG | 0.402395 | 7_1:+75179760 | Msa1038360:CDS |
| TTTCCAACTGTTTGAATTCA+GGG | 0.404484 | 7_1:-75180584 | None:intergenic |
| CTGTGGAAGTAAGTGTCTTT+CGG | 0.410596 | 7_1:-75181067 | None:intergenic |
| GGGCGGTTCCATAACATATA+CGG | 0.411031 | 7_1:+75180835 | Msa1038360:CDS |
| TGCTGCTGATATGGGTGGGA+TGG | 0.411073 | 7_1:+75180007 | Msa1038360:CDS |
| ATAGTTAATAAGTTATCTTA+AGG | 0.415728 | 7_1:+75182973 | Msa1038360:three_prime_UTR |
| GACCAACAACAAACCTCAGC+AGG | 0.427378 | 7_1:-75180639 | None:intergenic |
| GCCAATATGGCTCTCTCTCA+AGG | 0.433604 | 7_1:-75179761 | None:intergenic |
| AGAATTTCCATTACTGGTGC+TGG | 0.433626 | 7_1:+75179798 | Msa1038360:CDS |
| CGACATCCTTAGTAACTTTG+AGG | 0.437723 | 7_1:-75179968 | None:intergenic |
| AGTTCTGAAACAAACGACTA+TGG | 0.438533 | 7_1:+75179720 | Msa1038360:CDS |
| TTGCGGCCACGAACACCCTC+TGG | 0.442633 | 7_1:-75181752 | None:intergenic |
| TGCCTGTTTGAGGCAGTACT+TGG | 0.446490 | 7_1:+75183036 | Msa1038360:three_prime_UTR |
| TTGGAATTGAGTGCCGCATT+GGG | 0.450298 | 7_1:+75180815 | Msa1038360:CDS |
| TCCAGCCACAAGATGCATAT+GGG | 0.456498 | 7_1:+75180743 | Msa1038360:intron |
| CAAACAAATATGGACAGAAA+AGG | 0.458430 | 7_1:+75183186 | Msa1038360:three_prime_UTR |
| ATACCCATCGAACACATTCC+TGG | 0.461494 | 7_1:+75181728 | Msa1038360:CDS |
| CTAGGATTAATGGTGTTAAG+AGG | 0.463596 | 7_1:+75180102 | Msa1038360:CDS |
| CACAGATAAATTTGAGATGT+GGG | 0.465937 | 7_1:+75181085 | Msa1038360:CDS |
| TGTTCAACTAGGTTCACTTC+GGG | 0.469995 | 7_1:+75182842 | Msa1038360:CDS |
| TTCATTGATGAGTGTGTTGA+AGG | 0.471656 | 7_1:+75181137 | Msa1038360:CDS |
| AACGTTTCAAGTGAATGGTT+AGG | 0.473054 | 7_1:+75182917 | Msa1038360:three_prime_UTR |
| AAATTTGAGATGTGGGGAGA+TGG | 0.478216 | 7_1:+75181092 | Msa1038360:CDS |
| GCTGGAAAGTTCATAACTAA+AGG | 0.479702 | 7_1:+75183232 | Msa1038360:three_prime_UTR |
| CACCAAGTACTGCCTCAAAC+AGG | 0.480807 | 7_1:-75183038 | None:intergenic |
| GGCTGATGCCTGGCCTGCTG+AGG | 0.481849 | 7_1:+75180626 | Msa1038360:CDS |
| TCGTCACTTCCAATATTCAC+TGG | 0.484294 | 7_1:-75181650 | None:intergenic |
| GCTGCTGATATGGGTGGGAT+GGG | 0.485557 | 7_1:+75180008 | Msa1038360:CDS |
| CTGTTCAACTAGGTTCACTT+CGG | 0.486306 | 7_1:+75182841 | Msa1038360:CDS |
| AAACAAATATGGACAGAAAA+GGG | 0.489146 | 7_1:+75183187 | Msa1038360:three_prime_UTR |
| TTGTTCGTCGCACAGGTGGA+AGG | 0.490310 | 7_1:+75181021 | Msa1038360:intron |
| GAATATTGGAAGTGACGAAA+TGG | 0.492369 | 7_1:+75181655 | Msa1038360:CDS |
| CCTGGTCCAGAGGGTGTTCG+TGG | 0.493108 | 7_1:+75181746 | Msa1038360:CDS |
| ATACCTTTCCATGTACCAAA+AGG | 0.493262 | 7_1:-75180859 | None:intergenic |
| GCTTGAAGGAGGCTGATGCC+TGG | 0.494249 | 7_1:+75180616 | Msa1038360:CDS |
| CCACGAACACCCTCTGGACC+AGG | 0.495598 | 7_1:-75181746 | None:intergenic |
| TCGCACAGGTGGAAGGGAAA+AGG | 0.497508 | 7_1:+75181028 | Msa1038360:intron |
| ACAACAAACCTCAGCAGGCC+AGG | 0.498680 | 7_1:-75180634 | None:intergenic |
| GCCACAAGATGCATATGGGC+TGG | 0.501504 | 7_1:+75180747 | Msa1038360:intron |
| GGTGTTGATGTAACATCCTA+TGG | 0.504451 | 7_1:+75182789 | Msa1038360:CDS |
| TTCCAATATTCACTGGCTCC+CGG | 0.506890 | 7_1:-75181643 | None:intergenic |
| GGCTCCAACAATGAAGTTGA+AGG | 0.508928 | 7_1:+75181811 | Msa1038360:CDS |
| AAATCCACCAGCACCAGTAA+TGG | 0.510988 | 7_1:-75179805 | None:intergenic |
| AATCAGAAGCAATAATGTAA+TGG | 0.514034 | 7_1:-75179866 | None:intergenic |
| TTTGGAATTGAGTGCCGCAT+TGG | 0.517604 | 7_1:+75180814 | Msa1038360:CDS |
| CCACAGATAAATTTGAGATG+TGG | 0.517863 | 7_1:+75181084 | Msa1038360:CDS |
| CTACCCTGAATTCAAACAGT+TGG | 0.519009 | 7_1:+75180581 | Msa1038360:CDS |
| AATCTTGCTGCTGATATGGG+TGG | 0.525081 | 7_1:+75180002 | Msa1038360:CDS |
| TAATTGCCTCAAAGTTACTA+AGG | 0.532121 | 7_1:+75179962 | Msa1038360:CDS |
| CTTAAGACGGCGAGCAATGT+GGG | 0.532266 | 7_1:-75179835 | None:intergenic |
| TCCAGCCCATATGCATCTTG+TGG | 0.539478 | 7_1:-75180748 | None:intergenic |
| ATTTCCATTACTGGTGCTGG+TGG | 0.540705 | 7_1:+75179801 | Msa1038360:CDS |
| TTATCAAAGAGAAACTTGGC+TGG | 0.541202 | 7_1:+75181789 | Msa1038360:CDS |
| GGAAACAAATGTGAGCTTGA+AGG | 0.543901 | 7_1:+75180602 | Msa1038360:CDS |
| AGTGTGTTGAAGGCGTGCTT+AGG | 0.545415 | 7_1:+75181147 | Msa1038360:CDS |
| CAGCTTGAGAAAGAGAAGGC+TGG | 0.546482 | 7_1:+75182765 | Msa1038360:CDS |
| ACTCAAGCCCCTGTTCAACT+AGG | 0.554112 | 7_1:+75182831 | Msa1038360:CDS |
| TCAATATGATTGAAGCTGCT+AGG | 0.554345 | 7_1:+75180084 | Msa1038360:CDS |
| TACCTTTCCATGTACCAAAA+GGG | 0.556614 | 7_1:-75180858 | None:intergenic |
| ATCTTGCTGCTGATATGGGT+GGG | 0.558451 | 7_1:+75180003 | Msa1038360:CDS |
| GGCTTGAGTCGATACCACTT+TGG | 0.561236 | 7_1:-75182817 | None:intergenic |
| TTCAACACACTCATCAATGA+AGG | 0.562822 | 7_1:-75181135 | None:intergenic |
| ACACTTATCAAAGAGAAACT+TGG | 0.564802 | 7_1:+75181785 | Msa1038360:CDS |
| GGTTCACTTCGGGCTGCAGA+TGG | 0.567966 | 7_1:+75182852 | Msa1038360:CDS |
| GCTGCAGATGGCAATGAATG+AGG | 0.572119 | 7_1:+75182864 | Msa1038360:CDS |
| TAATGACAGAGTGATTGGAT+TGG | 0.577549 | 7_1:-75180037 | None:intergenic |
| GGACCAGGAATGTGTTCGAT+GGG | 0.580174 | 7_1:-75181731 | None:intergenic |
| AGCAATAATGTAATGGCCCT+CGG | 0.581156 | 7_1:-75179859 | None:intergenic |
| TAACCCTAAGATCAACAAGA+TGG | 0.582222 | 7_1:-75179935 | None:intergenic |
| TGGACCAGGAATGTGTTCGA+TGG | 0.583669 | 7_1:-75181732 | None:intergenic |
| TGTTCGTCGCACAGGTGGAA+GGG | 0.590103 | 7_1:+75181022 | Msa1038360:intron |
| GAATTGAGTGCCGCATTGGG+CGG | 0.593320 | 7_1:+75180818 | Msa1038360:CDS |
| TCTTAAGACGGCGAGCAATG+TGG | 0.603116 | 7_1:-75179836 | None:intergenic |
| TACCACTTTGGATGATCCAT+AGG | 0.605260 | 7_1:-75182805 | None:intergenic |
| CCACATCTCAAATTTATCTG+TGG | 0.609197 | 7_1:-75181084 | None:intergenic |
| TGCTCGCCGTCTTAAGACCG+AGG | 0.623060 | 7_1:+75179842 | Msa1038360:CDS |
| CGAACACATTCCTGGTCCAG+AGG | 0.625075 | 7_1:+75181736 | Msa1038360:CDS |
| AGGGTAGATACAAGCACTAG+AGG | 0.626056 | 7_1:-75180565 | None:intergenic |
| AATGGCCCTCGGTCTTAAGA+CGG | 0.626199 | 7_1:-75179848 | None:intergenic |
| ACAGATAAATTTGAGATGTG+GGG | 0.627741 | 7_1:+75181086 | Msa1038360:CDS |
| GAGAGGAACCTGATGAAGAG+AGG | 0.631269 | 7_1:-75179359 | None:intergenic |
| TATCAAAGAGAAACTTGGCT+GGG | 0.631951 | 7_1:+75181790 | Msa1038360:CDS |
| GCTCGCCGTCTTAAGACCGA+GGG | 0.637185 | 7_1:+75179843 | Msa1038360:CDS |
| ACACTCATCAATGAAGGTGA+AGG | 0.645434 | 7_1:-75181129 | None:intergenic |
| AGAGCAGCTTGAGAAAGAGA+AGG | 0.646063 | 7_1:+75182761 | Msa1038360:CDS |
| GAAGAATGAGCACATGACTG+AGG | 0.648944 | 7_1:+75179893 | Msa1038360:CDS |
| GAACACATTCCTGGTCCAGA+GGG | 0.654286 | 7_1:+75181737 | Msa1038360:CDS |
| AGTTCATAACTAAAGGACAA+TGG | 0.661351 | 7_1:+75183239 | Msa1038360:three_prime_UTR |
| ATCCTATGGATCATCCAAAG+TGG | 0.669201 | 7_1:+75182803 | Msa1038360:CDS |
| GAAGTGAACCTAGTTGAACA+GGG | 0.670267 | 7_1:-75182839 | None:intergenic |
| CTTGAGAAAGAGAAGGCTGG+AGG | 0.670675 | 7_1:+75182768 | Msa1038360:CDS |
| AATGGTTAGCATGAATGAGA+TGG | 0.673558 | 7_1:+75181673 | Msa1038360:CDS |
| AACAAATGTGAGCTTGAAGG+AGG | 0.696219 | 7_1:+75180605 | Msa1038360:CDS |
| AAGACGGCGAGCAATGTGGG+AGG | 0.698789 | 7_1:-75179832 | None:intergenic |
| AAGTGAACCTAGTTGAACAG+GGG | 0.722747 | 7_1:-75182838 | None:intergenic |
| TGTTATGGAACCGCCCAATG+CGG | 0.735755 | 7_1:-75180828 | None:intergenic |
| TAAGTGTATTGTCTGAATTG+CGG | 0.744809 | 7_1:-75181769 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTGTTTTATTTTTTGT+AGG | + | chr7_1:75180532-75180551 | Msa1038360:intron | 10.0% |
| !!! | TTAGTTATCTCATATTTTTA+AGG | + | chr7_1:75180125-75180144 | Msa1038360:intron | 15.0% |
| !!! | ATTAAGTTGTTTATCTAAAT+AGG | + | chr7_1:75180335-75180354 | Msa1038360:intron | 15.0% |
| !!! | TTAAGTTGTTTATCTAAATA+GGG | + | chr7_1:75180336-75180355 | Msa1038360:intron | 15.0% |
| !! | AATTTCAAAAAGAAAAACTA+CGG | - | chr7_1:75181225-75181244 | None:intergenic | 15.0% |
| !! | TTGTGAATAGAAATTATTAA+TGG | - | chr7_1:75181303-75181322 | None:intergenic | 15.0% |
| !! | TATACAAAGAAAACTAAATT+TGG | + | chr7_1:75181515-75181534 | Msa1038360:intron | 15.0% |
| !! | ATAGTTAATAAGTTATCTTA+AGG | + | chr7_1:75182973-75182992 | Msa1038360:three_prime_UTR | 15.0% |
| !! | CATCAATCATAAAAATAAAA+TGG | - | chr7_1:75183213-75183232 | None:intergenic | 15.0% |
| !!! | AATTGAATTTGCAGTTTTTA+AGG | - | chr7_1:75179539-75179558 | None:intergenic | 20.0% |
| !!! | AAGCATTATAACAAAGATTT+TGG | + | chr7_1:75180796-75180815 | Msa1038360:CDS | 20.0% |
| !! | ATTTCAAAAAGAAAAACTAC+GGG | - | chr7_1:75181224-75181243 | None:intergenic | 20.0% |
| !!! | CATTTTATAAAGCAAAAACA+AGG | - | chr7_1:75181866-75181885 | None:intergenic | 20.0% |
| !! | AAGTAAAGAAGAAAAGATAA+AGG | - | chr7_1:75182010-75182029 | None:intergenic | 20.0% |
| !! | CTCAATTCTGATATTATTAT+AGG | + | chr7_1:75182707-75182726 | Msa1038360:intron | 20.0% |
| !! | ATTCTGATATTATTATAGGA+TGG | + | chr7_1:75182711-75182730 | Msa1038360:intron | 20.0% |
| !! | TTCTGATATTATTATAGGAT+GGG | + | chr7_1:75182712-75182731 | Msa1038360:intron | 20.0% |
| !!! | AGTTATCTTAAGGTTAATTT+TGG | + | chr7_1:75182983-75183002 | Msa1038360:three_prime_UTR | 20.0% |
| !!! | ATTCAGACTTTAAAAAAACA+CGG | - | chr7_1:75183099-75183118 | None:intergenic | 20.0% |
| !!! | TTTATTTTTATGATTGATGC+TGG | + | chr7_1:75183214-75183233 | Msa1038360:three_prime_UTR | 20.0% |
| ! | AGAAGAATTGAGATTTGATT+GGG | - | chr7_1:75179333-75179352 | None:intergenic | 25.0% |
| ! | AAGAAGAATTGAGATTTGAT+TGG | - | chr7_1:75179334-75179353 | None:intergenic | 25.0% |
| !! | ATCTTTCTTCTAATTTGTGT+CGG | + | chr7_1:75179496-75179515 | Msa1038360:intron | 25.0% |
| ! | AATCAGAAGCAATAATGTAA+TGG | - | chr7_1:75179869-75179888 | None:intergenic | 25.0% |
| ! | ATTACATTATTGCTTCTGAT+TGG | + | chr7_1:75179868-75179887 | Msa1038360:CDS | 25.0% |
| !!! | GGTCTTTGAATTGTTATTTT+CGG | + | chr7_1:75180658-75180677 | Msa1038360:intron | 25.0% |
| !! | AGCTGAATTTTAAATTTTGC+AGG | + | chr7_1:75180888-75180907 | Msa1038360:intron | 25.0% |
| ! | AGCATACAAAACATAAATGA+CGG | - | chr7_1:75180939-75180958 | None:intergenic | 25.0% |
| ! | AATTCTATAGATGCTTAAGT+AGG | + | chr7_1:75181361-75181380 | Msa1038360:intron | 25.0% |
| ! | AATTCCAATCATTCAAGATT+TGG | + | chr7_1:75181394-75181413 | Msa1038360:intron | 25.0% |
| ! | ATTCCAATCATTCAAGATTT+GGG | + | chr7_1:75181395-75181414 | Msa1038360:intron | 25.0% |
| !! | TTAGGTTAGTTCTTATTTCT+TGG | + | chr7_1:75181561-75181580 | Msa1038360:intron | 25.0% |
| ! | TCTGATTTAGTCAATCTAAA+AGG | - | chr7_1:75181620-75181639 | None:intergenic | 25.0% |
| ! | GTTTATAAGACGAAACAAAA+GGG | - | chr7_1:75181894-75181913 | None:intergenic | 25.0% |
| ! | TCTCAAGAAAATATAACATC+AGG | - | chr7_1:75181973-75181992 | None:intergenic | 25.0% |
| ! | GTGGGATATATATTTATTTG+TGG | - | chr7_1:75182287-75182306 | None:intergenic | 25.0% |
| !! | ATAATAGTTAAGAGCATATG+AGG | - | chr7_1:75182387-75182406 | None:intergenic | 25.0% |
| ! | CAAATAAGCATAGTGATATT+TGG | - | chr7_1:75182469-75182488 | None:intergenic | 25.0% |
| ! | TTTGTGCGTGTAATATATAT+TGG | + | chr7_1:75182573-75182592 | Msa1038360:intron | 25.0% |
| !!! | AATGCGCTTATTTTGTTTTA+TGG | + | chr7_1:75183013-75183032 | Msa1038360:three_prime_UTR | 25.0% |
| !!! | TCCTTTTAAGGACTATTTAT+TGG | + | chr7_1:75183150-75183169 | Msa1038360:three_prime_UTR | 25.0% |
| !!! | CCTTTTAAGGACTATTTATT+GGG | + | chr7_1:75183151-75183170 | Msa1038360:three_prime_UTR | 25.0% |
| ! | AAACAAATATGGACAGAAAA+GGG | + | chr7_1:75183187-75183206 | Msa1038360:three_prime_UTR | 25.0% |
| !!! | TTTTTTTAACCTCAGTATCC+TGG | + | chr7_1:75179592-75179611 | Msa1038360:intron | 30.0% |
| !! | GAAATTCTTAGCTTTTCTGT+TGG | - | chr7_1:75179786-75179805 | None:intergenic | 30.0% |
| AAGCTAAGAATTTCCATTAC+TGG | + | chr7_1:75179792-75179811 | Msa1038360:CDS | 30.0% | |
| TAATTGCCTCAAAGTTACTA+AGG | + | chr7_1:75179962-75179981 | Msa1038360:CDS | 30.0% | |
| ATACATAATGACAGAGTGAT+TGG | - | chr7_1:75180045-75180064 | None:intergenic | 30.0% | |
| AGTCGTATGAGAGAATATTA+TGG | + | chr7_1:75180363-75180382 | Msa1038360:intron | 30.0% | |
| TTTCCAACTGTTTGAATTCA+GGG | - | chr7_1:75180587-75180606 | None:intergenic | 30.0% | |
| !!! | ATTGTTATTTTCGGTTATGC+TGG | + | chr7_1:75180667-75180686 | Msa1038360:intron | 30.0% |
| TGGTTATTCATTTGTACACT+CGG | + | chr7_1:75180687-75180706 | Msa1038360:intron | 30.0% | |
| ! | CACAGATAAATTTGAGATGT+GGG | + | chr7_1:75181085-75181104 | Msa1038360:CDS | 30.0% |
| ! | ACAGATAAATTTGAGATGTG+GGG | + | chr7_1:75181086-75181105 | Msa1038360:CDS | 30.0% |
| ! | GCTTTTATGAACGATGAAAA+TGG | + | chr7_1:75181259-75181278 | Msa1038360:intron | 30.0% |
| TTCTTTGTATACAACCACAT+AGG | - | chr7_1:75181506-75181525 | None:intergenic | 30.0% | |
| ! | GCTTTCTGTATATCTGTTTT+AGG | + | chr7_1:75181543-75181562 | Msa1038360:intron | 30.0% |
| TAAGTGTATTGTCTGAATTG+CGG | - | chr7_1:75181772-75181791 | None:intergenic | 30.0% | |
| ACACTTATCAAAGAGAAACT+TGG | + | chr7_1:75181785-75181804 | Msa1038360:CDS | 30.0% | |
| AATACCTTCAACTTCATTGT+TGG | - | chr7_1:75181818-75181837 | None:intergenic | 30.0% | |
| GGTTTATAAGACGAAACAAA+AGG | - | chr7_1:75181895-75181914 | None:intergenic | 30.0% | |
| GAAAATGATCAAATATGGCA+GGG | - | chr7_1:75181916-75181935 | None:intergenic | 30.0% | |
| TGAGGGAAAATGATCAAATA+TGG | - | chr7_1:75181921-75181940 | None:intergenic | 30.0% | |
| ATTCTCAGTTAATACACAGT+GGG | - | chr7_1:75182305-75182324 | None:intergenic | 30.0% | |
| ATCATGTATTGCAGAACAAT+TGG | + | chr7_1:75182510-75182529 | Msa1038360:intron | 30.0% | |
| TCATGTATTGCAGAACAATT+GGG | + | chr7_1:75182511-75182530 | Msa1038360:intron | 30.0% | |
| ATTAGTTGTTTGTGCTTCAT+TGG | + | chr7_1:75182647-75182666 | Msa1038360:intron | 30.0% | |
| ! | GGCTTAGAATTACATACTTT+TGG | + | chr7_1:75182733-75182752 | Msa1038360:CDS | 30.0% |
| ! | ACTTAAACGTTTCAAGTGAA+TGG | + | chr7_1:75182912-75182931 | Msa1038360:three_prime_UTR | 30.0% |
| !!! | TGCTATTTTGAAGAGAACTT+TGG | + | chr7_1:75182948-75182967 | Msa1038360:three_prime_UTR | 30.0% |
| !! | AAGTCGTTTTCTTCCTTTTA+AGG | + | chr7_1:75183138-75183157 | Msa1038360:three_prime_UTR | 30.0% |
| CCCAATAAATAGTCCTTAAA+AGG | - | chr7_1:75183154-75183173 | None:intergenic | 30.0% | |
| CAAACAAATATGGACAGAAA+AGG | + | chr7_1:75183186-75183205 | Msa1038360:three_prime_UTR | 30.0% | |
| AGTTCATAACTAAAGGACAA+TGG | + | chr7_1:75183239-75183258 | Msa1038360:three_prime_UTR | 30.0% | |
| ACAAGAATGAGAATTGAGAG+AGG | - | chr7_1:75179379-75179398 | None:intergenic | 35.0% | |
| TGATTCATATTTGCGCAGAA+TGG | + | chr7_1:75179695-75179714 | Msa1038360:intron | 35.0% | |
| GATTCATATTTGCGCAGAAT+GGG | + | chr7_1:75179696-75179715 | Msa1038360:intron | 35.0% | |
| !! | AGTTCTGAAACAAACGACTA+TGG | + | chr7_1:75179720-75179739 | Msa1038360:CDS | 35.0% |
| AGTTCCATCTTGTTGATCTT+AGG | + | chr7_1:75179931-75179950 | Msa1038360:CDS | 35.0% | |
| GTTCCATCTTGTTGATCTTA+GGG | + | chr7_1:75179932-75179951 | Msa1038360:CDS | 35.0% | |
| TAACCCTAAGATCAACAAGA+TGG | - | chr7_1:75179938-75179957 | None:intergenic | 35.0% | |
| TCTTGTTGATCTTAGGGTTA+TGG | + | chr7_1:75179938-75179957 | Msa1038360:CDS | 35.0% | |
| TTTCAATCTTGCTGCTGATA+TGG | + | chr7_1:75179998-75180017 | Msa1038360:CDS | 35.0% | |
| TTCAATCTTGCTGCTGATAT+GGG | + | chr7_1:75179999-75180018 | Msa1038360:CDS | 35.0% | |
| TAATGACAGAGTGATTGGAT+TGG | - | chr7_1:75180040-75180059 | None:intergenic | 35.0% | |
| TCAATATGATTGAAGCTGCT+AGG | + | chr7_1:75180084-75180103 | Msa1038360:CDS | 35.0% | |
| ATTGAAGCTGCTAGGATTAA+TGG | + | chr7_1:75180092-75180111 | Msa1038360:CDS | 35.0% | |
| ! | CTAGGATTAATGGTGTTAAG+AGG | + | chr7_1:75180102-75180121 | Msa1038360:CDS | 35.0% |
| AGCAGTACAAATGTTTGTGT+TGG | - | chr7_1:75180174-75180193 | None:intergenic | 35.0% | |
| TGTCGATGAGTAAACATATG+TGG | + | chr7_1:75180461-75180480 | Msa1038360:intron | 35.0% | |
| ATGAGTAAACATATGTGGTG+TGG | + | chr7_1:75180466-75180485 | Msa1038360:intron | 35.0% | |
| TAAACATATGTGGTGTGGTA+TGG | + | chr7_1:75180471-75180490 | Msa1038360:intron | 35.0% | |
| TGGTATGGTGTCTATTTCAA+CGG | + | chr7_1:75180486-75180505 | Msa1038360:intron | 35.0% | |
| GTTTCCAACTGTTTGAATTC+AGG | - | chr7_1:75180588-75180607 | None:intergenic | 35.0% | |
| GGTTATTCATTTGTACACTC+GGG | + | chr7_1:75180688-75180707 | Msa1038360:intron | 35.0% | |
| TACCTTTCCATGTACCAAAA+GGG | - | chr7_1:75180861-75180880 | None:intergenic | 35.0% | |
| ATACCTTTCCATGTACCAAA+AGG | - | chr7_1:75180862-75180881 | None:intergenic | 35.0% | |
| CCACATCTCAAATTTATCTG+TGG | - | chr7_1:75181087-75181106 | None:intergenic | 35.0% | |
| ! | CCACAGATAAATTTGAGATG+TGG | + | chr7_1:75181084-75181103 | Msa1038360:CDS | 35.0% |
| TTCAACACACTCATCAATGA+AGG | - | chr7_1:75181138-75181157 | None:intergenic | 35.0% | |
| TTCATTGATGAGTGTGTTGA+AGG | + | chr7_1:75181137-75181156 | Msa1038360:CDS | 35.0% | |
| AAGCCCAAATCTTGAATGAT+TGG | - | chr7_1:75181401-75181420 | None:intergenic | 35.0% | |
| GATTGACTAAATCAGACTTC+CGG | + | chr7_1:75181624-75181643 | Msa1038360:intron | 35.0% | |
| ATTGACTAAATCAGACTTCC+GGG | + | chr7_1:75181625-75181644 | Msa1038360:CDS | 35.0% | |
| GAATATTGGAAGTGACGAAA+TGG | + | chr7_1:75181655-75181674 | Msa1038360:CDS | 35.0% | |
| AATGGTTAGCATGAATGAGA+TGG | + | chr7_1:75181673-75181692 | Msa1038360:CDS | 35.0% | |
| TTATCAAAGAGAAACTTGGC+TGG | + | chr7_1:75181789-75181808 | Msa1038360:CDS | 35.0% | |
| TATCAAAGAGAAACTTGGCT+GGG | + | chr7_1:75181790-75181809 | Msa1038360:CDS | 35.0% | |
| GGAAAATGATCAAATATGGC+AGG | - | chr7_1:75181917-75181936 | None:intergenic | 35.0% | |
| TTCCCTCAAGAAAAGAGTAA+CGG | + | chr7_1:75181933-75181952 | Msa1038360:intron | 35.0% | |
| ! | TTCCGTTACTCTTTTCTTGA+GGG | - | chr7_1:75181938-75181957 | None:intergenic | 35.0% |
| ! | ATTCCGTTACTCTTTTCTTG+AGG | - | chr7_1:75181939-75181958 | None:intergenic | 35.0% |
| TTTGACATGTGAATCAGTGT+TGG | - | chr7_1:75182146-75182165 | None:intergenic | 35.0% | |
| CATTCTCAGTTAATACACAG+TGG | - | chr7_1:75182306-75182325 | None:intergenic | 35.0% | |
| GTGTATTAACTGAGAATGCA+AGG | + | chr7_1:75182308-75182327 | Msa1038360:intron | 35.0% | |
| TATTAACTGAGAATGCAAGG+AGG | + | chr7_1:75182311-75182330 | Msa1038360:intron | 35.0% | |
| !!! | GTTAGTTTTGACAGATCATG+TGG | - | chr7_1:75182363-75182382 | None:intergenic | 35.0% |
| ! | TTTTCCATAATCGACAACAC+TGG | - | chr7_1:75182435-75182454 | None:intergenic | 35.0% |
| AGAATACAGACCCATTAACA+CGG | - | chr7_1:75182620-75182639 | None:intergenic | 35.0% | |
| ! | AACGTTTCAAGTGAATGGTT+AGG | + | chr7_1:75182917-75182936 | Msa1038360:three_prime_UTR | 35.0% |
| CATCGACAGACAAACAAATA+TGG | + | chr7_1:75183176-75183195 | Msa1038360:three_prime_UTR | 35.0% | |
| GCTGGAAAGTTCATAACTAA+AGG | + | chr7_1:75183232-75183251 | Msa1038360:three_prime_UTR | 35.0% | |
| CAGTACTATGTCATTAGACC+AGG | - | chr7_1:75179613-75179632 | None:intergenic | 40.0% | |
| ! | AGCTTTTCTGTTGGCCAATA+TGG | - | chr7_1:75179777-75179796 | None:intergenic | 40.0% |
| AGAATTTCCATTACTGGTGC+TGG | + | chr7_1:75179798-75179817 | Msa1038360:CDS | 40.0% | |
| AGCAATAATGTAATGGCCCT+CGG | - | chr7_1:75179862-75179881 | None:intergenic | 40.0% | |
| CGACATCCTTAGTAACTTTG+AGG | - | chr7_1:75179971-75179990 | None:intergenic | 40.0% | |
| TTTGAGAGAGCTTACGGATA+TGG | + | chr7_1:75180195-75180214 | Msa1038360:intron | 40.0% | |
| ATGTATCTTACCCCACTTAG+TGG | + | chr7_1:75180399-75180418 | Msa1038360:intron | 40.0% | |
| TGTATCTTACCCCACTTAGT+GGG | + | chr7_1:75180400-75180419 | Msa1038360:intron | 40.0% | |
| ! | AAGCTTTATCCCACTAAGTG+GGG | - | chr7_1:75180412-75180431 | None:intergenic | 40.0% |
| ! | CAAGCTTTATCCCACTAAGT+GGG | - | chr7_1:75180413-75180432 | None:intergenic | 40.0% |
| CTACCCTGAATTCAAACAGT+TGG | + | chr7_1:75180581-75180600 | Msa1038360:CDS | 40.0% | |
| GGAAACAAATGTGAGCTTGA+AGG | + | chr7_1:75180602-75180621 | Msa1038360:CDS | 40.0% | |
| AACAAATGTGAGCTTGAAGG+AGG | + | chr7_1:75180605-75180624 | Msa1038360:CDS | 40.0% | |
| TTCATTTGTACACTCGGGTT+AGG | + | chr7_1:75180693-75180712 | Msa1038360:intron | 40.0% | |
| CAAAAGGGCCGTATATGTTA+TGG | - | chr7_1:75180846-75180865 | None:intergenic | 40.0% | |
| ! | CATAACATATACGGCCCTTT+TGG | + | chr7_1:75180844-75180863 | Msa1038360:CDS | 40.0% |
| CTGTGGAAGTAAGTGTCTTT+CGG | - | chr7_1:75181070-75181089 | None:intergenic | 40.0% | |
| ! | AAATTTGAGATGTGGGGAGA+TGG | + | chr7_1:75181092-75181111 | Msa1038360:CDS | 40.0% |
| ACACTCATCAATGAAGGTGA+AGG | - | chr7_1:75181132-75181151 | None:intergenic | 40.0% | |
| !! | CAGGTCTTAAGTTTTGTGAG+AGG | - | chr7_1:75181483-75181502 | None:intergenic | 40.0% |
| AAACTTAAGACCTGCCTATG+TGG | + | chr7_1:75181489-75181508 | Msa1038360:intron | 40.0% | |
| TTGTATACAACCACATAGGC+AGG | - | chr7_1:75181502-75181521 | None:intergenic | 40.0% | |
| TCGTCACTTCCAATATTCAC+TGG | - | chr7_1:75181653-75181672 | None:intergenic | 40.0% | |
| CACCAACACTTTCCTTCATA+AGG | + | chr7_1:75182098-75182117 | Msa1038360:intron | 40.0% | |
| ! | CACCTTATGAAGGAAAGTGT+TGG | - | chr7_1:75182103-75182122 | None:intergenic | 40.0% |
| ATGAGCCTTAGACATGACTT+CGG | + | chr7_1:75182213-75182232 | Msa1038360:intron | 40.0% | |
| TGACAGATCATGTGGTTGTA+TGG | - | chr7_1:75182355-75182374 | None:intergenic | 40.0% | |
| ! | TAGACCAGTGTTGTCGATTA+TGG | + | chr7_1:75182428-75182447 | Msa1038360:intron | 40.0% |
| !! | GGTGTTGATGTAACATCCTA+TGG | + | chr7_1:75182789-75182808 | Msa1038360:CDS | 40.0% |
| ATCCTATGGATCATCCAAAG+TGG | + | chr7_1:75182803-75182822 | Msa1038360:CDS | 40.0% | |
| TACCACTTTGGATGATCCAT+AGG | - | chr7_1:75182808-75182827 | None:intergenic | 40.0% | |
| AAGTGAACCTAGTTGAACAG+GGG | - | chr7_1:75182841-75182860 | None:intergenic | 40.0% | |
| GAAGTGAACCTAGTTGAACA+GGG | - | chr7_1:75182842-75182861 | None:intergenic | 40.0% | |
| CTGTTCAACTAGGTTCACTT+CGG | + | chr7_1:75182841-75182860 | Msa1038360:CDS | 40.0% | |
| TGTTCAACTAGGTTCACTTC+GGG | + | chr7_1:75182842-75182861 | Msa1038360:CDS | 40.0% | |
| ! | TGTTTTATGGTGCCTGTTTG+AGG | + | chr7_1:75183026-75183045 | Msa1038360:three_prime_UTR | 40.0% |
| CTTTCACTCCTCTCTTCATC+AGG | + | chr7_1:75179351-75179370 | Msa1038360:five_prime_UTR | 45.0% | |
| GTCATTAGACCAGGATACTG+AGG | - | chr7_1:75179604-75179623 | None:intergenic | 45.0% | |
| ! | ATGGCTCTCTCTCAAGGTTT+TGG | - | chr7_1:75179758-75179777 | None:intergenic | 45.0% |
| ACCTTGAGAGAGAGCCATAT+TGG | + | chr7_1:75179760-75179779 | Msa1038360:CDS | 45.0% | |
| ! | ATTTCCATTACTGGTGCTGG+TGG | + | chr7_1:75179801-75179820 | Msa1038360:CDS | 45.0% |
| AAATCCACCAGCACCAGTAA+TGG | - | chr7_1:75179808-75179827 | None:intergenic | 45.0% | |
| GAAGAATGAGCACATGACTG+AGG | + | chr7_1:75179893-75179912 | Msa1038360:CDS | 45.0% | |
| AATCTTGCTGCTGATATGGG+TGG | + | chr7_1:75180002-75180021 | Msa1038360:CDS | 45.0% | |
| ATCTTGCTGCTGATATGGGT+GGG | + | chr7_1:75180003-75180022 | Msa1038360:CDS | 45.0% | |
| ! | CTGCTGTTTGAGAGAGCTTA+CGG | + | chr7_1:75180189-75180208 | Msa1038360:intron | 45.0% |
| ! | CCAAGCTTTATCCCACTAAG+TGG | - | chr7_1:75180414-75180433 | None:intergenic | 45.0% |
| CCACTTAGTGGGATAAAGCT+TGG | + | chr7_1:75180411-75180430 | Msa1038360:intron | 45.0% | |
| AGGGTAGATACAAGCACTAG+AGG | - | chr7_1:75180568-75180587 | None:intergenic | 45.0% | |
| TTCCAGCCACAAGATGCATA+TGG | + | chr7_1:75180742-75180761 | Msa1038360:intron | 45.0% | |
| TCCAGCCACAAGATGCATAT+GGG | + | chr7_1:75180743-75180762 | Msa1038360:intron | 45.0% | |
| ! | TTTGGAATTGAGTGCCGCAT+TGG | + | chr7_1:75180814-75180833 | Msa1038360:CDS | 45.0% |
| ! | TTGGAATTGAGTGCCGCATT+GGG | + | chr7_1:75180815-75180834 | Msa1038360:CDS | 45.0% |
| GGGCGGTTCCATAACATATA+CGG | + | chr7_1:75180835-75180854 | Msa1038360:CDS | 45.0% | |
| ! | TATACGGCCCTTTTGGTACA+TGG | + | chr7_1:75180851-75180870 | Msa1038360:CDS | 45.0% |
| !! | TTCCAATATTCACTGGCTCC+CGG | - | chr7_1:75181646-75181665 | None:intergenic | 45.0% |
| ATACCCATCGAACACATTCC+TGG | + | chr7_1:75181728-75181747 | Msa1038360:CDS | 45.0% | |
| GGCTCCAACAATGAAGTTGA+AGG | + | chr7_1:75181811-75181830 | Msa1038360:CDS | 45.0% | |
| ! | GACAGGTTGACACCTTATGA+AGG | - | chr7_1:75182113-75182132 | None:intergenic | 45.0% |
| GTGTTGGAAATGTGTCTGAC+AGG | - | chr7_1:75182130-75182149 | None:intergenic | 45.0% | |
| ! | TCATGTCTAAGGCTCATCGA+AGG | - | chr7_1:75182210-75182229 | None:intergenic | 45.0% |
| ACATAGCTGACACTCGAGTT+AGG | + | chr7_1:75182243-75182262 | Msa1038360:intron | 45.0% | |
| CTCGAGTTAGGTCTGATAGA+TGG | + | chr7_1:75182255-75182274 | Msa1038360:intron | 45.0% | |
| GGAGGTGAGTGAGTTAATCT+TGG | + | chr7_1:75182329-75182348 | Msa1038360:intron | 45.0% | |
| CACGGACGGTGTCTAAATAA+AGG | - | chr7_1:75182602-75182621 | None:intergenic | 45.0% | |
| TTAGACACCGTCCGTGTTAA+TGG | + | chr7_1:75182606-75182625 | Msa1038360:intron | 45.0% | |
| TAGACACCGTCCGTGTTAAT+GGG | + | chr7_1:75182607-75182626 | Msa1038360:intron | 45.0% | |
| TACAGACCCATTAACACGGA+CGG | - | chr7_1:75182616-75182635 | None:intergenic | 45.0% | |
| AGAGCAGCTTGAGAAAGAGA+AGG | + | chr7_1:75182761-75182780 | Msa1038360:CDS | 45.0% | |
| CGAAGTGAACCTAGTTGAAC+AGG | - | chr7_1:75182843-75182862 | None:intergenic | 45.0% | |
| GAGAGGAACCTGATGAAGAG+AGG | - | chr7_1:75179362-75179381 | None:intergenic | 50.0% | |
| AAGCACACAACACACGCTAG+TGG | - | chr7_1:75179649-75179668 | None:intergenic | 50.0% | |
| GCCAATATGGCTCTCTCTCA+AGG | - | chr7_1:75179764-75179783 | None:intergenic | 50.0% | |
| CTTAAGACGGCGAGCAATGT+GGG | - | chr7_1:75179838-75179857 | None:intergenic | 50.0% | |
| TCTTAAGACGGCGAGCAATG+TGG | - | chr7_1:75179839-75179858 | None:intergenic | 50.0% | |
| AATGGCCCTCGGTCTTAAGA+CGG | - | chr7_1:75179851-75179870 | None:intergenic | 50.0% | |
| GACCAACAACAAACCTCAGC+AGG | - | chr7_1:75180642-75180661 | None:intergenic | 50.0% | |
| TCCAGCCCATATGCATCTTG+TGG | - | chr7_1:75180751-75180770 | None:intergenic | 50.0% | |
| TGTTATGGAACCGCCCAATG+CGG | - | chr7_1:75180831-75180850 | None:intergenic | 50.0% | |
| ! | GGCCCTTTTGGTACATGGAA+AGG | + | chr7_1:75180856-75180875 | Msa1038360:CDS | 50.0% |
| !! | TTTGTTGTTCGTCGCACAGG+TGG | + | chr7_1:75181017-75181036 | Msa1038360:intron | 50.0% |
| GTCTTTCGGCAAAAAGCAGC+AGG | - | chr7_1:75181056-75181075 | None:intergenic | 50.0% | |
| ! | AGTGTGTTGAAGGCGTGCTT+AGG | + | chr7_1:75181147-75181166 | Msa1038360:CDS | 50.0% |
| CAGTAGACACGAGATCAGCA+TGG | - | chr7_1:75181178-75181197 | None:intergenic | 50.0% | |
| TTCCGGGAGCCAGTGAATAT+TGG | + | chr7_1:75181641-75181660 | Msa1038360:CDS | 50.0% | |
| GGACCAGGAATGTGTTCGAT+GGG | - | chr7_1:75181734-75181753 | None:intergenic | 50.0% | |
| TGGACCAGGAATGTGTTCGA+TGG | - | chr7_1:75181735-75181754 | None:intergenic | 50.0% | |
| GAACACATTCCTGGTCCAGA+GGG | + | chr7_1:75181737-75181756 | Msa1038360:CDS | 50.0% | |
| CCAAGCCGAAGTCATGTCTA+AGG | - | chr7_1:75182221-75182240 | None:intergenic | 50.0% | |
| CCTTAGACATGACTTCGGCT+TGG | + | chr7_1:75182218-75182237 | Msa1038360:intron | 50.0% | |
| CAGCTTGAGAAAGAGAAGGC+TGG | + | chr7_1:75182765-75182784 | Msa1038360:CDS | 50.0% | |
| CTTGAGAAAGAGAAGGCTGG+AGG | + | chr7_1:75182768-75182787 | Msa1038360:CDS | 50.0% | |
| GGCTTGAGTCGATACCACTT+TGG | - | chr7_1:75182820-75182839 | None:intergenic | 50.0% | |
| ACTCAAGCCCCTGTTCAACT+AGG | + | chr7_1:75182831-75182850 | Msa1038360:CDS | 50.0% | |
| GCTGCAGATGGCAATGAATG+AGG | + | chr7_1:75182864-75182883 | Msa1038360:CDS | 50.0% | |
| ! | TGCCTGTTTGAGGCAGTACT+TGG | + | chr7_1:75183036-75183055 | Msa1038360:three_prime_UTR | 50.0% |
| ! | CACCAAGTACTGCCTCAAAC+AGG | - | chr7_1:75183041-75183060 | None:intergenic | 50.0% |
| ! | CAACACACGCTAGTGGACGT+GGG | - | chr7_1:75179642-75179661 | None:intergenic | 55.0% |
| ! | ACAACACACGCTAGTGGACG+TGG | - | chr7_1:75179643-75179662 | None:intergenic | 55.0% |
| TGCTGCTGATATGGGTGGGA+TGG | + | chr7_1:75180007-75180026 | Msa1038360:CDS | 55.0% | |
| GCTGCTGATATGGGTGGGAT+GGG | + | chr7_1:75180008-75180027 | Msa1038360:CDS | 55.0% | |
| ACAACAAACCTCAGCAGGCC+AGG | - | chr7_1:75180637-75180656 | None:intergenic | 55.0% | |
| !! | GGCCTGCTGAGGTTTGTTGT+TGG | + | chr7_1:75180637-75180656 | Msa1038360:intron | 55.0% |
| GCCCATATGCATCTTGTGGC+TGG | - | chr7_1:75180747-75180766 | None:intergenic | 55.0% | |
| GCCACAAGATGCATATGGGC+TGG | + | chr7_1:75180747-75180766 | Msa1038360:intron | 55.0% | |
| ! | GAATTGAGTGCCGCATTGGG+CGG | + | chr7_1:75180818-75180837 | Msa1038360:CDS | 55.0% |
| !! | CGCTTTGTTGTTCGTCGCAC+AGG | + | chr7_1:75181014-75181033 | Msa1038360:intron | 55.0% |
| TTGTTCGTCGCACAGGTGGA+AGG | + | chr7_1:75181021-75181040 | Msa1038360:intron | 55.0% | |
| TGTTCGTCGCACAGGTGGAA+GGG | + | chr7_1:75181022-75181041 | Msa1038360:intron | 55.0% | |
| TCGCACAGGTGGAAGGGAAA+AGG | + | chr7_1:75181028-75181047 | Msa1038360:intron | 55.0% | |
| CGAACACATTCCTGGTCCAG+AGG | + | chr7_1:75181736-75181755 | Msa1038360:CDS | 55.0% | |
| ! | GACACGAGGGCACATGGGAT+GGG | - | chr7_1:75179456-75179475 | None:intergenic | 60.0% |
| CATCCCATGTGCCCTCGTGT+CGG | + | chr7_1:75179455-75179474 | Msa1038360:intron | 60.0% | |
| ATCCCATGTGCCCTCGTGTC+GGG | + | chr7_1:75179456-75179475 | Msa1038360:intron | 60.0% | |
| ! | CACGCTAGTGGACGTGGGAT+TGG | - | chr7_1:75179637-75179656 | None:intergenic | 60.0% |
| AAGACGGCGAGCAATGTGGG+AGG | - | chr7_1:75179835-75179854 | None:intergenic | 60.0% | |
| TGCTCGCCGTCTTAAGACCG+AGG | + | chr7_1:75179842-75179861 | Msa1038360:CDS | 60.0% | |
| GCTCGCCGTCTTAAGACCGA+GGG | + | chr7_1:75179843-75179862 | Msa1038360:CDS | 60.0% | |
| GCTTGAAGGAGGCTGATGCC+TGG | + | chr7_1:75180616-75180635 | Msa1038360:CDS | 60.0% | |
| GGTTCACTTCGGGCTGCAGA+TGG | + | chr7_1:75182852-75182871 | Msa1038360:CDS | 60.0% | |
| ! | CGACACGAGGGCACATGGGA+TGG | - | chr7_1:75179457-75179476 | None:intergenic | 65.0% |
| TCCCATGTGCCCTCGTGTCG+GGG | + | chr7_1:75179457-75179476 | Msa1038360:intron | 65.0% | |
| CCACGAACACCCTCTGGACC+AGG | - | chr7_1:75181749-75181768 | None:intergenic | 65.0% | |
| !! | CCTGGTCCAGAGGGTGTTCG+TGG | + | chr7_1:75181746-75181765 | Msa1038360:CDS | 65.0% |
| TTGCGGCCACGAACACCCTC+TGG | - | chr7_1:75181755-75181774 | None:intergenic | 65.0% | |
| ! | CCCCCGACACGAGGGCACAT+GGG | - | chr7_1:75179461-75179480 | None:intergenic | 70.0% |
| CCCATGTGCCCTCGTGTCGG+GGG | + | chr7_1:75179458-75179477 | Msa1038360:intron | 70.0% | |
| CCATGTGCCCTCGTGTCGGG+GGG | + | chr7_1:75179459-75179478 | Msa1038360:intron | 70.0% | |
| CATGTGCCCTCGTGTCGGGG+GGG | + | chr7_1:75179460-75179479 | Msa1038360:intron | 70.0% | |
| AACCCACCCCCCCGACACGA+GGG | - | chr7_1:75179469-75179488 | None:intergenic | 70.0% | |
| TAACCCACCCCCCCGACACG+AGG | - | chr7_1:75179470-75179489 | None:intergenic | 70.0% | |
| GGCTGATGCCTGGCCTGCTG+AGG | + | chr7_1:75180626-75180645 | Msa1038360:CDS | 70.0% | |
| ! | CCCCCCGACACGAGGGCACA+TGG | - | chr7_1:75179462-75179481 | None:intergenic | 75.0% |
| TGCCCTCGTGTCGGGGGGGT+GGG | + | chr7_1:75179464-75179483 | Msa1038360:intron | 75.0% | |
| ! | GTGCCCTCGTGTCGGGGGGG+TGG | + | chr7_1:75179463-75179482 | Msa1038360:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 75179310 | 75183272 | 75179310 | ID=Msa1038360;Name=Msa1038360 |
| chr7_1 | mRNA | 75179310 | 75183272 | 75179310 | ID=Msa1038360-mRNA-1;Parent=Msa1038360;Name=Msa1038360-mRNA-1;_AED=0.02;_eAED=0.02;_QI=64|1|1|1|0.83|0.71|7|388|376 |
| chr7_1 | exon | 75179310 | 75179372 | 75179310 | ID=Msa1038360-mRNA-1:exon:19099;Parent=Msa1038360-mRNA-1 |
| chr7_1 | exon | 75179713 | 75180123 | 75179713 | ID=Msa1038360-mRNA-1:exon:19100;Parent=Msa1038360-mRNA-1 |
| chr7_1 | exon | 75180554 | 75180647 | 75180554 | ID=Msa1038360-mRNA-1:exon:19101;Parent=Msa1038360-mRNA-1 |
| chr7_1 | exon | 75180748 | 75180877 | 75180748 | ID=Msa1038360-mRNA-1:exon:19102;Parent=Msa1038360-mRNA-1 |
| chr7_1 | exon | 75181036 | 75181168 | 75181036 | ID=Msa1038360-mRNA-1:exon:19103;Parent=Msa1038360-mRNA-1 |
| chr7_1 | exon | 75181625 | 75181832 | 75181625 | ID=Msa1038360-mRNA-1:exon:19104;Parent=Msa1038360-mRNA-1 |
| chr7_1 | exon | 75182729 | 75183272 | 75182729 | ID=Msa1038360-mRNA-1:exon:19105;Parent=Msa1038360-mRNA-1 |
| chr7_1 | five_prime_UTR | 75179310 | 75179372 | 75179310 | ID=Msa1038360-mRNA-1:five_prime_utr;Parent=Msa1038360-mRNA-1 |
| chr7_1 | five_prime_UTR | 75179713 | 75179713 | 75179713 | ID=Msa1038360-mRNA-1:five_prime_utr;Parent=Msa1038360-mRNA-1 |
| chr7_1 | CDS | 75179714 | 75180123 | 75179714 | ID=Msa1038360-mRNA-1:cds;Parent=Msa1038360-mRNA-1 |
| chr7_1 | CDS | 75180554 | 75180647 | 75180554 | ID=Msa1038360-mRNA-1:cds;Parent=Msa1038360-mRNA-1 |
| chr7_1 | CDS | 75180748 | 75180877 | 75180748 | ID=Msa1038360-mRNA-1:cds;Parent=Msa1038360-mRNA-1 |
| chr7_1 | CDS | 75181036 | 75181168 | 75181036 | ID=Msa1038360-mRNA-1:cds;Parent=Msa1038360-mRNA-1 |
| chr7_1 | CDS | 75181625 | 75181832 | 75181625 | ID=Msa1038360-mRNA-1:cds;Parent=Msa1038360-mRNA-1 |
| chr7_1 | CDS | 75182729 | 75182884 | 75182729 | ID=Msa1038360-mRNA-1:cds;Parent=Msa1038360-mRNA-1 |
| chr7_1 | three_prime_UTR | 75182885 | 75183272 | 75182885 | ID=Msa1038360-mRNA-1:three_prime_utr;Parent=Msa1038360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
