AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0047550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047550 MtrunA17_Chr7g0274831 97.650 766 15 2 1 764 1 765 0.0 1531
Msa0047550 MtrunA17_Chr1g0190021 72.335 741 196 6 31 764 24 762 0.0 1078
Msa0047550 MtrunA17_Chr1g0186431 57.483 755 307 7 15 760 8 757 0.0 887
Msa0047550 MtrunA17_Chr1g0168161 52.926 769 338 10 1 757 1 757 0.0 803
Msa0047550 MtrunA17_Chr4g0013831 39.625 747 412 15 35 759 5 734 5.82e-166 497
Msa0047550 MtrunA17_Chr7g0269631 37.838 629 327 15 35 634 5 598 1.17e-110 350
Msa0047550 MtrunA17_Chr4g0077091 53.425 73 33 1 689 760 1 73 2.13e-20 85.9
Msa0047550 MtrunA17_Chr8g0377481 34.028 144 82 4 627 758 826 968 1.66e-17 87.4
Msa0047550 MtrunA17_Chr8g0377481 22.139 402 257 11 355 705 371 767 4.13e-14 76.6
Msa0047550 MtrunA17_Chr3g0122391 23.174 397 241 9 355 697 419 805 1.72e-16 84.3
Msa0047550 MtrunA17_Chr3g0122391 36.508 126 68 4 637 753 898 1020 1.80e-15 80.9
Msa0047550 MtrunA17_Chr5g0405701 25.225 333 208 8 365 666 498 820 5.37e-15 79.3
Msa0047550 MtrunA17_Chr8g0371601 25.000 348 211 11 365 677 460 792 3.93e-14 76.6
Msa0047550 MtrunA17_Chr8g0371601 35.878 131 64 4 633 744 1024 1153 1.71e-13 74.7
Msa0047550 MtrunA17_Chr5g0447641 34.127 126 58 4 640 743 1076 1198 4.46e-12 70.1
Msa0047550 MtrunA17_Chr5g0447641 20.718 362 235 7 355 669 596 952 6.02e-12 69.7
Msa0047550 MtrunA17_Chr8g0392301 33.871 124 62 3 637 743 860 980 1.57e-11 68.2
Msa0047550 MtrunA17_Chr8g0392301 20.588 374 238 3 355 669 362 735 3.16e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047550 AT3G04580.2 61.968 752 262 8 29 762 21 766 0.0 919
Msa0047550 AT3G04580.1 61.968 752 262 8 29 762 21 766 0.0 919
Msa0047550 AT3G23150.1 51.724 783 334 14 7 762 6 771 0.0 730
Msa0047550 AT3G23150.2 52.421 599 256 10 7 590 6 590 0.0 564
Msa0047550 AT1G04310.1 46.377 621 306 11 10 615 10 618 6.84e-173 511
Msa0047550 AT1G04310.2 46.377 621 306 11 10 615 10 618 6.84e-173 511
Msa0047550 AT1G66340.1 39.467 750 403 18 35 757 4 729 3.00e-163 490
Msa0047550 AT2G40940.1 38.648 577 338 10 54 621 21 590 3.44e-112 353
Msa0047550 AT1G27320.1 22.343 461 314 6 336 757 410 865 9.05e-20 95.1
Msa0047550 AT1G27320.1 29.927 137 75 3 637 753 889 1024 3.85e-13 73.9
Msa0047550 AT5G35750.1 22.438 361 227 8 356 669 567 921 7.19e-17 85.9
Msa0047550 AT5G35750.1 34.228 149 68 4 623 743 1013 1159 1.25e-13 75.5
Msa0047550 AT2G17820.1 25.074 339 219 8 366 677 488 818 4.72e-15 80.1
Msa0047550 AT2G01830.1 36.752 117 61 4 637 743 921 1034 3.08e-13 74.3
Msa0047550 AT2G01830.1 22.509 271 203 3 355 622 428 694 9.37e-13 72.8
Msa0047550 AT2G01830.4 36.752 117 61 4 637 743 921 1034 3.08e-13 74.3
Msa0047550 AT2G01830.4 22.509 271 203 3 355 622 428 694 9.37e-13 72.8
Msa0047550 AT2G01830.6 36.752 117 61 4 637 743 921 1034 3.08e-13 74.3
Msa0047550 AT2G01830.6 22.509 271 203 3 355 622 428 694 9.37e-13 72.8
Msa0047550 AT2G01830.3 36.752 117 61 4 637 743 921 1034 3.08e-13 74.3
Msa0047550 AT2G01830.3 22.509 271 203 3 355 622 428 694 9.37e-13 72.8
Msa0047550 AT2G01830.5 36.752 117 61 4 637 743 933 1046 3.29e-13 73.9
Msa0047550 AT2G01830.5 22.509 271 203 3 355 622 440 706 1.06e-12 72.4
Msa0047550 AT2G01830.2 36.752 117 61 4 637 743 944 1057 3.36e-13 73.9
Msa0047550 AT2G01830.2 22.509 271 203 3 355 622 451 717 1.20e-12 72.4
Msa0047550 AT5G10720.1 22.956 318 210 10 332 634 327 624 5.28e-11 67.0

Find 225 sgRNAs with CRISPR-Local

Find 602 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTATGTTGCAATGGAAAA+AGG 0.158153 1_1:-80499200 Msa0047550:exon
TCTCTTGTGATATCTGTTTA+TGG 0.177952 1_1:-80499131 Msa0047550:CDS
CTCCAATGTTCCATTTAAAT+TGG 0.194829 1_1:-80498955 Msa0047550:CDS
TGAAGGAATACCAATTTAAA+TGG 0.204373 1_1:+80498945 None:intergenic
ATACCTCGTCAACAACATTT+TGG 0.205448 1_1:+80495640 None:intergenic
CTCTATTTCTGTAAATGATT+TGG 0.214081 1_1:-80498469 Msa0047550:CDS
TTGGAGTGTACAAAGTATTT+TGG 0.234119 1_1:-80499057 Msa0047550:CDS
AAGTATAGGCATTGAGTAAA+TGG 0.235188 1_1:+80498889 None:intergenic
ACCATTCAAAATCATCCTTT+TGG 0.252407 1_1:-80496343 Msa0047550:CDS
TTAAGTTTCTCAAATTTCTT+AGG 0.253349 1_1:-80496085 Msa0047550:three_prime_UTR
TGAATAGAAGAGGGAGTAAT+AGG 0.259431 1_1:+80499669 None:intergenic
CTCAATGCCTATACTTACTA+TGG 0.275621 1_1:-80498882 Msa0047550:CDS
ACTTCAAAACCATCCATTTC+AGG 0.281316 1_1:+80496309 None:intergenic
GGAAGTTCCAAAGCCGAAAT+TGG 0.286448 1_1:-80496272 Msa0047550:CDS
CACCATCTATGTTGTTTGTT+AGG 0.292878 1_1:-80499310 Msa0047550:five_prime_UTR
CTCTTGTGATATCTGTTTAT+GGG 0.295715 1_1:-80499130 Msa0047550:CDS
CTACTAGCACTATTTAAAAT+TGG 0.299995 1_1:+80497508 None:intergenic
ATCTTATGCTATACTAGTTT+TGG 0.300114 1_1:-80498277 Msa0047550:CDS
CAAAGCCTTGAGTTCGATTT+CGG 0.313490 1_1:+80498249 None:intergenic
CCGCGAGATTAGGAAGTCTT+TGG 0.313919 1_1:-80498640 Msa0047550:CDS
TCAAAGGCCAATTTCGGCTT+TGG 0.315320 1_1:+80496265 None:intergenic
GGAAATGTTTCAACTCTAAC+TGG 0.322814 1_1:+80497860 None:intergenic
TGAAAACTCTTCGCCGGATT+CGG 0.327965 1_1:+80498495 None:intergenic
CTTCTTCTCAAGTTTCAATC+AGG 0.328501 1_1:-80496561 Msa0047550:CDS
GATAAGGATGATAGAAGTTC+TGG 0.333479 1_1:-80497616 Msa0047550:CDS
AAGTTTAATTTCCAGATAAC+TGG 0.338812 1_1:-80497553 Msa0047550:CDS
ATCTTCAATTTACCTAATCT+TGG 0.350046 1_1:-80499382 Msa0047550:five_prime_UTR
GGGAACTAGTACCAGTTATC+TGG 0.355067 1_1:+80497542 None:intergenic
CGAAATCGAACTCAAGGCTT+TGG 0.361339 1_1:-80498248 Msa0047550:CDS
TGTGCCAAACCCAGAGAGTT+TGG 0.362144 1_1:+80496594 None:intergenic
AGGAGGCTAGTTGGCATGTT+AGG 0.362594 1_1:-80498671 Msa0047550:CDS
CAATAATCAAAGGCCAATTT+CGG 0.365522 1_1:+80496259 None:intergenic
CTGGATATCACCAAACTCTC+TGG 0.365884 1_1:-80496604 Msa0047550:CDS
GGATCTTCAAATGCCTGAAA+TGG 0.366381 1_1:-80496322 Msa0047550:CDS
TCATCACCTATTACCATATC+AGG 0.368786 1_1:+80497742 None:intergenic
GTAAGCATCTCCGTACTCTT+TGG 0.372407 1_1:+80495931 None:intergenic
TGGAATTGGGGCAAGAGGTT+GGG 0.375142 1_1:-80498710 Msa0047550:CDS
GAAGGGAAAGGGAGAGAGGA+AGG 0.380210 1_1:+80499691 None:intergenic
AAAGACAGGGGTTGTGGGTG+GGG 0.382578 1_1:+80499719 None:intergenic
TTGGAATTGGGGCAAGAGGT+TGG 0.382688 1_1:-80498711 Msa0047550:CDS
TAAGAAGCTGCTTGAGAAGC+TGG 0.383208 1_1:-80496430 Msa0047550:CDS
GCAGAGATCCTTGCCTGATA+TGG 0.386198 1_1:-80497755 Msa0047550:CDS
GCTGCGAGTAGTGGTGAATC+TGG 0.386274 1_1:-80498384 Msa0047550:CDS
GCAAAACCGGGCGTTGCAAC+AGG 0.388211 1_1:-80498115 Msa0047550:CDS
GAAGCAGAATGTGTTGGAAT+TGG 0.390130 1_1:-80498724 Msa0047550:CDS
AGAAACTTAAAGAGCAAAAC+CGG 0.390137 1_1:-80498128 Msa0047550:CDS
CCCTCATCGTGGAATGTAGA+TGG 0.392008 1_1:+80497839 None:intergenic
CCTAATCTTGGTAGTTAAGT+TGG 0.397095 1_1:-80499370 Msa0047550:five_prime_UTR
GAGACCTTTGCATTCAATCC+TGG 0.400066 1_1:-80498022 Msa0047550:CDS
AAATGAGCTCCTTGCCTGGC+TGG 0.400987 1_1:+80498071 None:intergenic
AAGCAGAATGTGTTGGAATT+GGG 0.402075 1_1:-80498723 Msa0047550:CDS
AAGTGTTTGTGTGTGTATAA+AGG 0.402755 1_1:-80497799 Msa0047550:CDS
TTAAAATTGGTCCATCTGAA+TGG 0.402769 1_1:+80497521 None:intergenic
TCCTTGCCTGATATGGTAAT+AGG 0.403180 1_1:-80497748 Msa0047550:CDS
ATTATGCAACTCCAAGGCTT+TGG 0.407308 1_1:+80498578 None:intergenic
GGATGTTGACCCGCGAGATT+AGG 0.409855 1_1:-80498650 Msa0047550:CDS
AACCTAACAAACAACATAGA+TGG 0.414497 1_1:+80499308 None:intergenic
CCTCCTTAGGTTCATTGTTG+TGG 0.420175 1_1:+80497479 None:intergenic
GCAGCTCCGAGTGCAGAATC+AGG 0.421232 1_1:+80498402 None:intergenic
GAAGACAAAGACAGGGGTTG+TGG 0.421771 1_1:+80499713 None:intergenic
CAAGTAACCGCTGTTTCATC+GGG 0.427661 1_1:-80496402 Msa0047550:CDS
GCATGCAATGATGGCCAGCC+AGG 0.428498 1_1:-80498085 Msa0047550:CDS
TGTTGAGCTTTCCAAAGCCT+TGG 0.429033 1_1:-80498589 Msa0047550:CDS
TTATTGAACTTATATGATAG+AGG 0.430014 1_1:-80497679 Msa0047550:CDS
AAGTGCAGAAGAACGCATAA+AGG 0.432930 1_1:-80496226 Msa0047550:CDS
TGCCTACAGGTGGGAATGAA+TGG 0.434232 1_1:-80496198 Msa0047550:CDS
CCAACTTAACTACCAAGATT+AGG 0.435481 1_1:+80499370 None:intergenic
AGATGATGGAAGGTAATATC+TGG 0.435995 1_1:-80496623 Msa0047550:CDS
TCTCAAATGAGCTCCTTGCC+TGG 0.436435 1_1:+80498067 None:intergenic
TTGTGTGTGTATAAAGGCTT+TGG 0.437175 1_1:-80497793 Msa0047550:CDS
GGCACAAAAGCATGCAATGA+TGG 0.437900 1_1:-80498094 Msa0047550:CDS
TCAAGTAACCGCTGTTTCAT+CGG 0.439160 1_1:-80496403 Msa0047550:CDS
CAATACTGTTGAAGAGAACC+TGG 0.440422 1_1:-80496042 Msa0047550:three_prime_UTR
ATATCTGTTTATGGGATTGA+TGG 0.441688 1_1:-80499122 Msa0047550:CDS
ATCACCAAACTCTCTGGGTT+TGG 0.443024 1_1:-80496598 Msa0047550:CDS
CTGAAGCTTAGGCCCTCCTT+AGG 0.443209 1_1:+80497466 None:intergenic
TAAAATTGGTCCATCTGAAT+GGG 0.443946 1_1:+80497522 None:intergenic
TTTGAACTTTGAATAGAAGA+GGG 0.445280 1_1:+80499660 None:intergenic
AGAGGAAGGAAGACAAAGAC+AGG 0.450976 1_1:+80499705 None:intergenic
AGTTGCATAATTGTGCGGTT+TGG 0.452705 1_1:-80498566 Msa0047550:CDS
TCATGAGTTGAAGCCGAATC+CGG 0.456399 1_1:-80498508 Msa0047550:CDS
CCACCATGAGATGGAGATAG+TGG 0.458301 1_1:-80498223 Msa0047550:CDS
AGACCTTTGCATTCAATCCT+GGG 0.459059 1_1:-80498021 Msa0047550:CDS
TTGAAGTTGCAAGGAAGATT+CGG 0.459346 1_1:-80496293 Msa0047550:CDS
CCGATGATGATAATGTAAAC+AGG 0.466113 1_1:-80496461 Msa0047550:CDS
GGATGCCTGATGAGGATAGA+AGG 0.466923 1_1:-80498545 Msa0047550:CDS
TAGAAGAGGGAGTAATAGGA+AGG 0.470105 1_1:+80499673 None:intergenic
GGGAGTAATAGGAAGGGAAA+GGG 0.471476 1_1:+80499680 None:intergenic
GTAAAGTAGCTCAAGGGGTA+TGG 0.472963 1_1:+80498989 None:intergenic
CACTATCTCCATCTCATGGT+GGG 0.473097 1_1:+80498224 None:intergenic
TTTCAAAAGAAGAGGAATCA+AGG 0.474095 1_1:+80498770 None:intergenic
TTGAGGCCTGATTCTGCACT+CGG 0.474787 1_1:-80498408 Msa0047550:CDS
CTGCGAGTAGTGGTGAATCT+GGG 0.475786 1_1:-80498383 Msa0047550:CDS
CTGGAAACTTCCTTTGTCGT+TGG 0.475889 1_1:+80497879 None:intergenic
GTTAGAGATAAGAAAGAGCA+AGG 0.479184 1_1:-80498442 Msa0047550:CDS
AAGACAAAGACAGGGGTTGT+GGG 0.479732 1_1:+80499714 None:intergenic
AAAATAATGAAACTAATTTG+TGG 0.483738 1_1:+80499415 None:intergenic
TGAAAGTGATACCGCAGATA+AGG 0.485783 1_1:-80497632 Msa0047550:CDS
CAGGCATTTGAAGATCCAAA+AGG 0.486141 1_1:+80496328 None:intergenic
TCTAACATACTGAATATACT+AGG 0.488620 1_1:-80496015 Msa0047550:three_prime_UTR
ATAGGAAGGGAAAGGGAGAG+AGG 0.490784 1_1:+80499687 None:intergenic
AACTCTCTGGGTTTGGCACA+AGG 0.491639 1_1:-80496591 Msa0047550:CDS
ATCACCCTTCTATCCTCATC+AGG 0.491816 1_1:+80498540 None:intergenic
AAAATCATAACTTTGACCAC+TGG 0.492004 1_1:-80499251 Msa0047550:five_prime_UTR
TTTGTGCCTGTTGCAACGCC+CGG 0.496643 1_1:+80498109 None:intergenic
TTACTAATACAGTTCCCAAA+AGG 0.502484 1_1:+80499276 None:intergenic
AAATTTGAAACATGAAGTAT+CGG 0.504455 1_1:+80498330 None:intergenic
TTCTTCCGAAATCGAACTCA+AGG 0.505225 1_1:-80498254 Msa0047550:CDS
GCGTTTGATAAATGATGTAA+TGG 0.505741 1_1:-80497911 Msa0047550:CDS
AGGGAGTAATAGGAAGGGAA+AGG 0.508189 1_1:+80499679 None:intergenic
CTATGAAAGCAACAAATTGA+AGG 0.510314 1_1:+80498928 None:intergenic
CGTTAAGACCTCTAAACTGT+TGG 0.510727 1_1:+80496493 None:intergenic
CGGTTCATAGAAAGATTTGT+GGG 0.512095 1_1:-80499742 None:intergenic
AACGTGTGTACAAATTTCAA+TGG 0.512368 1_1:+80499498 None:intergenic
GTTGCTTTCATAGTTCTATG+TGG 0.512396 1_1:-80498918 Msa0047550:CDS
AGTATAGGCATTGAGTAAAT+GGG 0.513040 1_1:+80498890 None:intergenic
ATGAGGGCCATAGTAAGTAT+AGG 0.515615 1_1:+80498875 None:intergenic
TACCAATTTAAATGGAACAT+TGG 0.516471 1_1:+80498953 None:intergenic
CCTGTTTACATTATCATCAT+CGG 0.516759 1_1:+80496461 None:intergenic
CAAAGACAGGGGTTGTGGGT+GGG 0.523285 1_1:+80499718 None:intergenic
AGAAACAATTGAAAGGAATG+AGG 0.527304 1_1:+80498858 None:intergenic
TAACAAAGTAAAGTAGCTCA+AGG 0.529518 1_1:+80498982 None:intergenic
GCTATCTCATGAAGGAGGAT+AGG 0.531373 1_1:+80496162 None:intergenic
CATAAAGGAGAGATGCCTAC+AGG 0.532003 1_1:-80496211 Msa0047550:CDS
ATTTCTTGTTTATGTTGCAA+TGG 0.532594 1_1:-80499207 Msa0047550:exon
TATTGAACTTATATGATAGA+GGG 0.534997 1_1:-80497678 Msa0047550:CDS
CATAAACAAGAAATAATCAA+TGG 0.536136 1_1:+80499216 None:intergenic
CTTCAAATGCCTGAAATGGA+TGG 0.537656 1_1:-80496318 Msa0047550:CDS
TTAGAATAAAGAGATCAATT+CGG 0.538264 1_1:+80499606 None:intergenic
TTTCTTGAAGCAGAATGTGT+TGG 0.539138 1_1:-80498730 Msa0047550:CDS
CATTTGCAAAACACTGGTGC+AGG 0.542360 1_1:-80497443 Msa0047550:intron
CAATGATGGCCAGCCAGGCA+AGG 0.543126 1_1:-80498080 Msa0047550:CDS
TTCAGTATGTTAGAAATCCC+AGG 0.545716 1_1:+80496024 None:intergenic
GTTTAGATCTAAATGAGCTA+TGG 0.548744 1_1:-80499345 Msa0047550:five_prime_UTR
AGAAACAGAAGGAGGCTAGT+TGG 0.551296 1_1:-80498680 Msa0047550:CDS
GAGCTATGAAAACTCTTCGC+CGG 0.551463 1_1:+80498489 None:intergenic
GTTTGAACTTTGAATAGAAG+AGG 0.551662 1_1:+80499659 None:intergenic
CAGTACTCACTGTCTAATGT+AGG 0.552536 1_1:+80495737 None:intergenic
AAAAGAAGAGGAATCAAGGT+GGG 0.554060 1_1:+80498774 None:intergenic
AACAAAGTAAAGTAGCTCAA+GGG 0.554101 1_1:+80498983 None:intergenic
TTGCAGTGGCACATGAAACA+AGG 0.555378 1_1:+80498805 None:intergenic
TTAGAGATAAGAAAGAGCAA+GGG 0.559027 1_1:-80498441 Msa0047550:CDS
ACAAAGACAGGGGTTGTGGG+TGG 0.562859 1_1:+80499717 None:intergenic
GCAAAGGTCTCCTCATTCCA+TGG 0.564414 1_1:+80498034 None:intergenic
AAGTGATGAGCCATGGAATG+AGG 0.565260 1_1:-80498044 Msa0047550:CDS
CCATCTACATTCCACGATGA+GGG 0.566420 1_1:-80497839 Msa0047550:CDS
CCACAACAATGAACCTAAGG+AGG 0.566649 1_1:-80497479 Msa0047550:CDS
ACGAATGGCTGCTACAGCAC+CGG 0.566933 1_1:+80498356 None:intergenic
CATCTTTCTTTGTTCGACAG+TGG 0.567859 1_1:+80495909 None:intergenic
ATACTAAAACCATGAACTAA+CGG 0.568215 1_1:-80495823 Msa0047550:three_prime_UTR
AGTTGCTGACCAGGTTGCTG+TGG 0.568847 1_1:-80498196 Msa0047550:CDS
CCACTATCTCCATCTCATGG+TGG 0.569247 1_1:+80498223 None:intergenic
TTTGCTTTCAATGTTTCAAG+AGG 0.570011 1_1:-80497998 Msa0047550:CDS
AGTGGAGGTAGTTGCTGACC+AGG 0.570687 1_1:-80498205 Msa0047550:CDS
TGGATATCACCAAACTCTCT+GGG 0.571039 1_1:-80496603 Msa0047550:CDS
GAAACAATTGAAAGGAATGA+GGG 0.573404 1_1:+80498859 None:intergenic
AAGAAGCTGCTTGAGAAGCT+GGG 0.574319 1_1:-80496429 Msa0047550:CDS
AGAAGAGGGAGTAATAGGAA+GGG 0.574871 1_1:+80499674 None:intergenic
AGAACAGTCCTGCTACGTGC+AGG 0.575168 1_1:-80496129 Msa0047550:CDS
AGGGCTCTCTCCAAAGAGTA+CGG 0.575975 1_1:-80495941 Msa0047550:three_prime_UTR
GCACCACAACAATGAACCTA+AGG 0.576436 1_1:-80497482 Msa0047550:CDS
AGTGGTGAATCTGGGGACTC+CGG 0.577575 1_1:-80498375 Msa0047550:CDS
ACCTATTACCATATCAGGCA+AGG 0.579803 1_1:+80497747 None:intergenic
GAGAGATAGAAACAATTGAA+AGG 0.580396 1_1:+80498851 None:intergenic
GCACTCGGAGCTGCGAGTAG+TGG 0.580746 1_1:-80498393 Msa0047550:CDS
GAAATTTCAGCCAACGACAA+AGG 0.583389 1_1:-80497889 Msa0047550:CDS
TTTGAGAAAGTGATGAGCCA+TGG 0.585455 1_1:-80498051 Msa0047550:CDS
GCTTTGGACCCACCATGAGA+TGG 0.587831 1_1:-80498232 Msa0047550:CDS
AGCAGAATGTGTTGGAATTG+GGG 0.589243 1_1:-80498722 Msa0047550:CDS
TGTGTTGGAATTGGGGCAAG+AGG 0.591001 1_1:-80498715 Msa0047550:CDS
TAGAGATAAGAAAGAGCAAG+GGG 0.591331 1_1:-80498440 Msa0047550:CDS
CTTCAGCATTTGCAAAACAC+TGG 0.591426 1_1:-80497449 Msa0047550:CDS
CAAAGACTTCCTAATCTCGC+GGG 0.591973 1_1:+80498641 None:intergenic
TCGGTTCATAGAAAGATTTG+TGG 0.592280 1_1:-80499743 None:intergenic
TTCCCAAAATGTTGTTGACG+AGG 0.592651 1_1:-80495643 None:intergenic
ACTCTCTGGGTTTGGCACAA+GGG 0.593543 1_1:-80496590 Msa0047550:CDS
TCCATCTACATTCCACGATG+AGG 0.594668 1_1:-80497840 Msa0047550:CDS
ATGAAGTATCGGCATACGAA+TGG 0.595708 1_1:+80498341 None:intergenic
ACAAAGTAAAGTAGCTCAAG+GGG 0.596064 1_1:+80498984 None:intergenic
TGGGATTATGAAGAAACAGA+AGG 0.598480 1_1:-80498691 Msa0047550:CDS
CCAAAGACTTCCTAATCTCG+CGG 0.601574 1_1:+80498640 None:intergenic
CTTGGAGTTGCATAATTGTG+CGG 0.602360 1_1:-80498571 Msa0047550:CDS
TTTATACACACACAAACACT+TGG 0.603367 1_1:+80497801 None:intergenic
GCTGTAAGAGCAATAATCAA+AGG 0.605453 1_1:+80496249 None:intergenic
GGTACTAGTTCCCATTCAGA+TGG 0.605734 1_1:-80497532 Msa0047550:CDS
AATACTGTTGAAGAGAACCT+GGG 0.607450 1_1:-80496041 Msa0047550:three_prime_UTR
CAATTCGGTAGAAAAGAGAA+AGG 0.608522 1_1:+80499621 None:intergenic
GAGACAAGGCCACAGCAACC+TGG 0.608666 1_1:+80498187 None:intergenic
TGGTAATAGGTGATGAGGCA+AGG 0.611503 1_1:-80497735 Msa0047550:CDS
GTTCGTTAGCTATCTCATGA+AGG 0.613143 1_1:+80496154 None:intergenic
TGCAGTGGCACATGAAACAA+GGG 0.615264 1_1:+80498806 None:intergenic
TGCGAGTAGTGGTGAATCTG+GGG 0.617209 1_1:-80498382 Msa0047550:CDS
TAAGATGTCTCAACAAACTC+CGG 0.617656 1_1:+80498294 None:intergenic
CCTCCACTATCTCCATCTCA+TGG 0.620492 1_1:+80498220 None:intergenic
CGCACAATTATGCAACTCCA+AGG 0.622141 1_1:+80498572 None:intergenic
AAAGGAGAGATGCCTACAGG+TGG 0.625741 1_1:-80496208 Msa0047550:CDS
AAAGAAGAGGAATCAAGGTG+GGG 0.631154 1_1:+80498775 None:intergenic
AATTAGTTTCTTCAAAGACA+CGG 0.632451 1_1:+80499523 None:intergenic
TTTCAATCAGGATCATCGCA+TGG 0.633630 1_1:-80496549 Msa0047550:CDS
TTTCATGTACAGATGATGGA+AGG 0.633844 1_1:-80496633 Msa0047550:intron
TGCGGTTTGGATGCCTGATG+AGG 0.636065 1_1:-80498553 Msa0047550:CDS
GAGGAAGGAAGACAAAGACA+GGG 0.636351 1_1:+80499706 None:intergenic
GAGAGCCCTGATTCATAATG+CGG 0.639937 1_1:+80495955 None:intergenic
AAGAACAGATGCATGAGACA+AGG 0.644755 1_1:+80498173 None:intergenic
AAACCCAGGATTGAATGCAA+AGG 0.645170 1_1:+80498018 None:intergenic
TTTGGAAAGCTCAACAAGTG+TGG 0.647875 1_1:+80498596 None:intergenic
CGTTAGCTATCTCATGAAGG+AGG 0.649779 1_1:+80496157 None:intergenic
GATGCCTGATGAGGATAGAA+GGG 0.652796 1_1:-80498544 Msa0047550:CDS
GAAACATTGAAAGCAAACCC+AGG 0.654290 1_1:+80498004 None:intergenic
TCTGCAAGTCTGAAACCTTG+AGG 0.656284 1_1:-80495672 Msa0047550:three_prime_UTR
ATCAAAACCCGATGAAACAG+CGG 0.664158 1_1:+80496395 None:intergenic
AAGGAGAGATGCCTACAGGT+GGG 0.666460 1_1:-80496207 Msa0047550:CDS
GCAAGAAGCTTCCCTCATCG+TGG 0.667374 1_1:+80497828 None:intergenic
TGATATGGTAATAGGTGATG+AGG 0.667642 1_1:-80497740 Msa0047550:CDS
CACATGAAACAAGGGCAGTG+AGG 0.669285 1_1:+80498814 None:intergenic
CACAACAATGAACCTAAGGA+GGG 0.669995 1_1:-80497478 Msa0047550:CDS
AGAGATAAGAAAGAGCAAGG+GGG 0.671908 1_1:-80498439 Msa0047550:CDS
CCATGAGATGGAGATAGTGG+AGG 0.673370 1_1:-80498220 Msa0047550:CDS
ACTTCTATCATCCTTATCTG+CGG 0.674734 1_1:+80497621 None:intergenic
GAAACTTAAAGAGCAAAACC+GGG 0.674790 1_1:-80498127 Msa0047550:CDS
ATCCATTCATTCCCACCTGT+AGG 0.679015 1_1:+80496196 None:intergenic
CAAAAGAAGAGGAATCAAGG+TGG 0.682155 1_1:+80498773 None:intergenic
GGTGGGGAAAGTAATTGCAG+TGG 0.686035 1_1:+80498791 None:intergenic
AGGAAGGAAGACAAAGACAG+GGG 0.697555 1_1:+80499707 None:intergenic
GATTATGAAGAAACAGAAGG+AGG 0.703737 1_1:-80498688 Msa0047550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATGAAACTAATTTG+TGG + chr1_1:80495967-80495986 None:intergenic 15.0%
!!! TTCTCTTTTTCAAATTTATA+TGG - chr1_1:80497965-80497984 Msa0047550:CDS 15.0%
!! AAAATAATGAAACTAATTTG+TGG + chr1_1:80495967-80495986 None:intergenic 15.0%
!!! TTCTCTTTTTCAAATTTATA+TGG - chr1_1:80497965-80497984 Msa0047550:CDS 15.0%
!! TTAGAATAAAGAGATCAATT+CGG + chr1_1:80495776-80495795 None:intergenic 20.0%
!! CATAAACAAGAAATAATCAA+TGG + chr1_1:80496166-80496185 None:intergenic 20.0%
!!! AAATTTGAAACATGAAGTAT+CGG + chr1_1:80497052-80497071 None:intergenic 20.0%
!!! CTTCATGTTTCAAATTTTAA+AGG - chr1_1:80497055-80497074 Msa0047550:intron 20.0%
!!! ATGTTTCAAATTTTAAAGGA+GGG - chr1_1:80497059-80497078 Msa0047550:intron 20.0%
!!! CAATTAATTTTGCATATGAT+CGG - chr1_1:80497673-80497692 Msa0047550:CDS 20.0%
!! TTATTGAACTTATATGATAG+AGG - chr1_1:80497700-80497719 Msa0047550:CDS 20.0%
!! TATTGAACTTATATGATAGA+GGG - chr1_1:80497701-80497720 Msa0047550:CDS 20.0%
!! ATCAACAAAAACTTAAACAA+AGG + chr1_1:80497997-80498016 None:intergenic 20.0%
!!! CTATCAATAAAATTAGTTTG+TGG - chr1_1:80498224-80498243 Msa0047550:CDS 20.0%
!! AATATTCAAAAGGTAAAAAG+TGG + chr1_1:80498660-80498679 None:intergenic 20.0%
!! TTAAGTTTCTCAAATTTCTT+AGG - chr1_1:80499294-80499313 Msa0047550:five_prime_UTR 20.0%
!! AAAATGATCAAACAGAAAAA+TGG + chr1_1:80499403-80499422 None:intergenic 20.0%
!! TTAGAATAAAGAGATCAATT+CGG + chr1_1:80495776-80495795 None:intergenic 20.0%
!! CATAAACAAGAAATAATCAA+TGG + chr1_1:80496166-80496185 None:intergenic 20.0%
!!! AAATTTGAAACATGAAGTAT+CGG + chr1_1:80497052-80497071 None:intergenic 20.0%
!!! CTTCATGTTTCAAATTTTAA+AGG - chr1_1:80497055-80497074 Msa0047550:intron 20.0%
!!! ATGTTTCAAATTTTAAAGGA+GGG - chr1_1:80497059-80497078 Msa0047550:intron 20.0%
!!! CAATTAATTTTGCATATGAT+CGG - chr1_1:80497673-80497692 Msa0047550:CDS 20.0%
!! TTATTGAACTTATATGATAG+AGG - chr1_1:80497700-80497719 Msa0047550:CDS 20.0%
!! TATTGAACTTATATGATAGA+GGG - chr1_1:80497701-80497720 Msa0047550:CDS 20.0%
!! ATCAACAAAAACTTAAACAA+AGG + chr1_1:80497997-80498016 None:intergenic 20.0%
!!! CTATCAATAAAATTAGTTTG+TGG - chr1_1:80498224-80498243 Msa0047550:CDS 20.0%
!! AATATTCAAAAGGTAAAAAG+TGG + chr1_1:80498660-80498679 None:intergenic 20.0%
!! TTAAGTTTCTCAAATTTCTT+AGG - chr1_1:80499294-80499313 Msa0047550:five_prime_UTR 20.0%
!! AAAATGATCAAACAGAAAAA+TGG + chr1_1:80499403-80499422 None:intergenic 20.0%
! TTTGAACTTTGAATAGAAGA+GGG + chr1_1:80495722-80495741 None:intergenic 25.0%
!! AATTAGTTTCTTCAAAGACA+CGG + chr1_1:80495859-80495878 None:intergenic 25.0%
! ATCTTCAATTTACCTAATCT+TGG - chr1_1:80495997-80496016 Msa0047550:three_prime_UTR 25.0%
!! ATTTCTTGTTTATGTTGCAA+TGG - chr1_1:80496172-80496191 Msa0047550:CDS 25.0%
! TTTATGTTGCAATGGAAAAA+GGG - chr1_1:80496180-80496199 Msa0047550:CDS 25.0%
! TACCAATTTAAATGGAACAT+TGG + chr1_1:80496429-80496448 None:intergenic 25.0%
! TGAAGGAATACCAATTTAAA+TGG + chr1_1:80496437-80496456 None:intergenic 25.0%
!!! CTCTATTTCTGTAAATGATT+TGG - chr1_1:80496910-80496929 Msa0047550:intron 25.0%
!!! CATGTTTCAAATTTTAAAGG+AGG - chr1_1:80497058-80497077 Msa0047550:intron 25.0%
!!! ATCTTATGCTATACTAGTTT+TGG - chr1_1:80497102-80497121 Msa0047550:intron 25.0%
!! AAGTTTAATTTCCAGATAAC+TGG - chr1_1:80497826-80497845 Msa0047550:CDS 25.0%
!! CTACTAGCACTATTTAAAAT+TGG + chr1_1:80497874-80497893 None:intergenic 25.0%
!! CAATTTTAAATAGTGCTAGT+AGG - chr1_1:80497872-80497891 Msa0047550:CDS 25.0%
! TTCACTTATTCAGATAATTG+AGG + chr1_1:80498158-80498177 None:intergenic 25.0%
!!! TCAATAAAATTAGTTTGTGG+TGG - chr1_1:80498227-80498246 Msa0047550:CDS 25.0%
! AACCAGTATTATTTATAGTG+TGG - chr1_1:80498346-80498365 Msa0047550:CDS 25.0%
! AACCACACTATAAATAATAC+TGG + chr1_1:80498351-80498370 None:intergenic 25.0%
! TTATTTATAGTGTGGTTTCT+TGG - chr1_1:80498354-80498373 Msa0047550:CDS 25.0%
! ATGAATAGATACTAAGAATG+AGG + chr1_1:80498382-80498401 None:intergenic 25.0%
! AGTATCTATTCATCACAAAT+CGG - chr1_1:80498389-80498408 Msa0047550:CDS 25.0%
! CTAAATGAAGAATGAAATAG+CGG - chr1_1:80498431-80498450 Msa0047550:CDS 25.0%
! TCTGTACATGAAATATTGTA+TGG + chr1_1:80498739-80498758 None:intergenic 25.0%
! AATATTTCATGTACAGATGA+TGG - chr1_1:80498742-80498761 Msa0047550:CDS 25.0%
!! TATTGAAGTAACGAATTTTG+AGG + chr1_1:80499322-80499341 None:intergenic 25.0%
! TCTAACATACTGAATATACT+AGG - chr1_1:80499364-80499383 Msa0047550:five_prime_UTR 25.0%
!! ATTTTTCTTGCAGATATTTG+TGG - chr1_1:80499519-80499538 Msa0047550:five_prime_UTR 25.0%
! ATACTAAAACCATGAACTAA+CGG - chr1_1:80499556-80499575 Msa0047550:five_prime_UTR 25.0%
! TTTGAACTTTGAATAGAAGA+GGG + chr1_1:80495722-80495741 None:intergenic 25.0%
!! AATTAGTTTCTTCAAAGACA+CGG + chr1_1:80495859-80495878 None:intergenic 25.0%
! ATCTTCAATTTACCTAATCT+TGG - chr1_1:80495997-80496016 Msa0047550:three_prime_UTR 25.0%
!! ATTTCTTGTTTATGTTGCAA+TGG - chr1_1:80496172-80496191 Msa0047550:CDS 25.0%
! TTTATGTTGCAATGGAAAAA+GGG - chr1_1:80496180-80496199 Msa0047550:CDS 25.0%
! TACCAATTTAAATGGAACAT+TGG + chr1_1:80496429-80496448 None:intergenic 25.0%
! TGAAGGAATACCAATTTAAA+TGG + chr1_1:80496437-80496456 None:intergenic 25.0%
!!! CTCTATTTCTGTAAATGATT+TGG - chr1_1:80496910-80496929 Msa0047550:intron 25.0%
!!! CATGTTTCAAATTTTAAAGG+AGG - chr1_1:80497058-80497077 Msa0047550:intron 25.0%
!!! ATCTTATGCTATACTAGTTT+TGG - chr1_1:80497102-80497121 Msa0047550:intron 25.0%
!! AAGTTTAATTTCCAGATAAC+TGG - chr1_1:80497826-80497845 Msa0047550:CDS 25.0%
!! CTACTAGCACTATTTAAAAT+TGG + chr1_1:80497874-80497893 None:intergenic 25.0%
!! CAATTTTAAATAGTGCTAGT+AGG - chr1_1:80497872-80497891 Msa0047550:CDS 25.0%
! TTCACTTATTCAGATAATTG+AGG + chr1_1:80498158-80498177 None:intergenic 25.0%
!!! TCAATAAAATTAGTTTGTGG+TGG - chr1_1:80498227-80498246 Msa0047550:CDS 25.0%
! AACCAGTATTATTTATAGTG+TGG - chr1_1:80498346-80498365 Msa0047550:CDS 25.0%
! AACCACACTATAAATAATAC+TGG + chr1_1:80498351-80498370 None:intergenic 25.0%
! TTATTTATAGTGTGGTTTCT+TGG - chr1_1:80498354-80498373 Msa0047550:CDS 25.0%
! ATGAATAGATACTAAGAATG+AGG + chr1_1:80498382-80498401 None:intergenic 25.0%
! AGTATCTATTCATCACAAAT+CGG - chr1_1:80498389-80498408 Msa0047550:CDS 25.0%
! CTAAATGAAGAATGAAATAG+CGG - chr1_1:80498431-80498450 Msa0047550:CDS 25.0%
! TCTGTACATGAAATATTGTA+TGG + chr1_1:80498739-80498758 None:intergenic 25.0%
! AATATTTCATGTACAGATGA+TGG - chr1_1:80498742-80498761 Msa0047550:CDS 25.0%
!! TATTGAAGTAACGAATTTTG+AGG + chr1_1:80499322-80499341 None:intergenic 25.0%
! TCTAACATACTGAATATACT+AGG - chr1_1:80499364-80499383 Msa0047550:five_prime_UTR 25.0%
!! ATTTTTCTTGCAGATATTTG+TGG - chr1_1:80499519-80499538 Msa0047550:five_prime_UTR 25.0%
! ATACTAAAACCATGAACTAA+CGG - chr1_1:80499556-80499575 Msa0047550:five_prime_UTR 25.0%
GTTTGAACTTTGAATAGAAG+AGG + chr1_1:80495723-80495742 None:intergenic 30.0%
AACGTGTGTACAAATTTCAA+TGG + chr1_1:80495884-80495903 None:intergenic 30.0%
GTTTAGATCTAAATGAGCTA+TGG - chr1_1:80496034-80496053 Msa0047550:three_prime_UTR 30.0%
AACCTAACAAACAACATAGA+TGG + chr1_1:80496074-80496093 None:intergenic 30.0%
!!! TAGGTTTAGCTTTTTCCTTT+TGG - chr1_1:80496088-80496107 Msa0047550:three_prime_UTR 30.0%
!!! AGGTTTAGCTTTTTCCTTTT+GGG - chr1_1:80496089-80496108 Msa0047550:three_prime_UTR 30.0%
TTACTAATACAGTTCCCAAA+AGG + chr1_1:80496106-80496125 None:intergenic 30.0%
AAAATCATAACTTTGACCAC+TGG - chr1_1:80496128-80496147 Msa0047550:CDS 30.0%
! ATGGTAATTTTCAAAACCAG+TGG + chr1_1:80496147-80496166 None:intergenic 30.0%
GTTTATGTTGCAATGGAAAA+AGG - chr1_1:80496179-80496198 Msa0047550:CDS 30.0%
TCTCTTGTGATATCTGTTTA+TGG - chr1_1:80496248-80496267 Msa0047550:CDS 30.0%
CTCTTGTGATATCTGTTTAT+GGG - chr1_1:80496249-80496268 Msa0047550:CDS 30.0%
ATATCTGTTTATGGGATTGA+TGG - chr1_1:80496257-80496276 Msa0047550:CDS 30.0%
!! ATGATGATGATGATGGAATT+TGG - chr1_1:80496303-80496322 Msa0047550:CDS 30.0%
!! TTGGAGTGTACAAAGTATTT+TGG - chr1_1:80496322-80496341 Msa0047550:CDS 30.0%
AACAAAGTAAAGTAGCTCAA+GGG + chr1_1:80496399-80496418 None:intergenic 30.0%
TAACAAAGTAAAGTAGCTCA+AGG + chr1_1:80496400-80496419 None:intergenic 30.0%
CTCCAATGTTCCATTTAAAT+TGG - chr1_1:80496424-80496443 Msa0047550:CDS 30.0%
CTATGAAAGCAACAAATTGA+AGG + chr1_1:80496454-80496473 None:intergenic 30.0%
!! AGTATAGGCATTGAGTAAAT+GGG + chr1_1:80496492-80496511 None:intergenic 30.0%
!! AAGTATAGGCATTGAGTAAA+TGG + chr1_1:80496493-80496512 None:intergenic 30.0%
GAAACAATTGAAAGGAATGA+GGG + chr1_1:80496523-80496542 None:intergenic 30.0%
AGAAACAATTGAAAGGAATG+AGG + chr1_1:80496524-80496543 None:intergenic 30.0%
GAGAGATAGAAACAATTGAA+AGG + chr1_1:80496531-80496550 None:intergenic 30.0%
TTTCAAAAGAAGAGGAATCA+AGG + chr1_1:80496612-80496631 None:intergenic 30.0%
!! TCCTCTTCTTTTGAAAATCA+AGG - chr1_1:80496616-80496635 Msa0047550:CDS 30.0%
! ACCTTGATTTTCAAAAGAAG+AGG + chr1_1:80496620-80496639 None:intergenic 30.0%
!! TTCTTTTGAAAATCAAGGTG+AGG - chr1_1:80496621-80496640 Msa0047550:CDS 30.0%
!! TCTTTTGAAAATCAAGGTGA+GGG - chr1_1:80496622-80496641 Msa0047550:CDS 30.0%
TTAGAGATAAGAAAGAGCAA+GGG - chr1_1:80496938-80496957 Msa0047550:intron 30.0%
AGAAACTTAAAGAGCAAAAC+CGG - chr1_1:80497251-80497270 Msa0047550:intron 30.0%
TTTGCTTTCAATGTTTCAAG+AGG - chr1_1:80497381-80497400 Msa0047550:intron 30.0%
GCGTTTGATAAATGATGTAA+TGG - chr1_1:80497468-80497487 Msa0047550:CDS 30.0%
TTTATACACACACAAACACT+TGG + chr1_1:80497581-80497600 None:intergenic 30.0%
AAGTGTTTGTGTGTGTATAA+AGG - chr1_1:80497580-80497599 Msa0047550:CDS 30.0%
TAAAATTGGTCCATCTGAAT+GGG + chr1_1:80497860-80497879 None:intergenic 30.0%
TTAAAATTGGTCCATCTGAA+TGG + chr1_1:80497861-80497880 None:intergenic 30.0%
! TCTTGGTTTGACAAAATTTC+CGG - chr1_1:80498129-80498148 Msa0047550:CDS 30.0%
! AATCGTTGTGTCAGATTTTT+AGG - chr1_1:80498253-80498272 Msa0047550:CDS 30.0%
! AGGGGGCTTTTTAAATTTAT+TGG + chr1_1:80498283-80498302 None:intergenic 30.0%
AGTTGCATCTACACTAAATA+GGG + chr1_1:80498302-80498321 None:intergenic 30.0%
TAGTTGCATCTACACTAAAT+AGG + chr1_1:80498303-80498322 None:intergenic 30.0%
! CGCTATTTCATTCTTCATTT+AGG + chr1_1:80498433-80498452 None:intergenic 30.0%
AGGTAAAAAGTGGAAAAAAG+TGG + chr1_1:80498650-80498669 None:intergenic 30.0%
TAGGACACAGAATATTCAAA+AGG + chr1_1:80498670-80498689 None:intergenic 30.0%
GTGAATCAAGCATATGTTAT+AGG + chr1_1:80498689-80498708 None:intergenic 30.0%
GTTACAAAACAATCACACAA+TGG + chr1_1:80498711-80498730 None:intergenic 30.0%
! TTTTCAAACCAACAGTTTAG+AGG - chr1_1:80498878-80498897 Msa0047550:CDS 30.0%
CCTGTTTACATTATCATCAT+CGG + chr1_1:80498921-80498940 None:intergenic 30.0%
! GATGATTTTGAATGGTATAC+TGG + chr1_1:80499032-80499051 None:intergenic 30.0%
! ACCATTCAAAATCATCCTTT+TGG - chr1_1:80499036-80499055 Msa0047550:CDS 30.0%
! TCCAAAAGGATGATTTTGAA+TGG + chr1_1:80499040-80499059 None:intergenic 30.0%
CAATAATCAAAGGCCAATTT+CGG + chr1_1:80499123-80499142 None:intergenic 30.0%
AGAAAAAATCCGTTAGTTCA+TGG + chr1_1:80499568-80499587 None:intergenic 30.0%
GTTTGAACTTTGAATAGAAG+AGG + chr1_1:80495723-80495742 None:intergenic 30.0%
AACGTGTGTACAAATTTCAA+TGG + chr1_1:80495884-80495903 None:intergenic 30.0%
GTTTAGATCTAAATGAGCTA+TGG - chr1_1:80496034-80496053 Msa0047550:three_prime_UTR 30.0%
AACCTAACAAACAACATAGA+TGG + chr1_1:80496074-80496093 None:intergenic 30.0%
!!! TAGGTTTAGCTTTTTCCTTT+TGG - chr1_1:80496088-80496107 Msa0047550:three_prime_UTR 30.0%
!!! AGGTTTAGCTTTTTCCTTTT+GGG - chr1_1:80496089-80496108 Msa0047550:three_prime_UTR 30.0%
TTACTAATACAGTTCCCAAA+AGG + chr1_1:80496106-80496125 None:intergenic 30.0%
AAAATCATAACTTTGACCAC+TGG - chr1_1:80496128-80496147 Msa0047550:CDS 30.0%
! ATGGTAATTTTCAAAACCAG+TGG + chr1_1:80496147-80496166 None:intergenic 30.0%
GTTTATGTTGCAATGGAAAA+AGG - chr1_1:80496179-80496198 Msa0047550:CDS 30.0%
TCTCTTGTGATATCTGTTTA+TGG - chr1_1:80496248-80496267 Msa0047550:CDS 30.0%
CTCTTGTGATATCTGTTTAT+GGG - chr1_1:80496249-80496268 Msa0047550:CDS 30.0%
ATATCTGTTTATGGGATTGA+TGG - chr1_1:80496257-80496276 Msa0047550:CDS 30.0%
!! ATGATGATGATGATGGAATT+TGG - chr1_1:80496303-80496322 Msa0047550:CDS 30.0%
!! TTGGAGTGTACAAAGTATTT+TGG - chr1_1:80496322-80496341 Msa0047550:CDS 30.0%
AACAAAGTAAAGTAGCTCAA+GGG + chr1_1:80496399-80496418 None:intergenic 30.0%
TAACAAAGTAAAGTAGCTCA+AGG + chr1_1:80496400-80496419 None:intergenic 30.0%
CTCCAATGTTCCATTTAAAT+TGG - chr1_1:80496424-80496443 Msa0047550:CDS 30.0%
CTATGAAAGCAACAAATTGA+AGG + chr1_1:80496454-80496473 None:intergenic 30.0%
!! AGTATAGGCATTGAGTAAAT+GGG + chr1_1:80496492-80496511 None:intergenic 30.0%
!! AAGTATAGGCATTGAGTAAA+TGG + chr1_1:80496493-80496512 None:intergenic 30.0%
GAAACAATTGAAAGGAATGA+GGG + chr1_1:80496523-80496542 None:intergenic 30.0%
AGAAACAATTGAAAGGAATG+AGG + chr1_1:80496524-80496543 None:intergenic 30.0%
GAGAGATAGAAACAATTGAA+AGG + chr1_1:80496531-80496550 None:intergenic 30.0%
TTTCAAAAGAAGAGGAATCA+AGG + chr1_1:80496612-80496631 None:intergenic 30.0%
!! TCCTCTTCTTTTGAAAATCA+AGG - chr1_1:80496616-80496635 Msa0047550:CDS 30.0%
! ACCTTGATTTTCAAAAGAAG+AGG + chr1_1:80496620-80496639 None:intergenic 30.0%
!! TTCTTTTGAAAATCAAGGTG+AGG - chr1_1:80496621-80496640 Msa0047550:CDS 30.0%
!! TCTTTTGAAAATCAAGGTGA+GGG - chr1_1:80496622-80496641 Msa0047550:CDS 30.0%
TTAGAGATAAGAAAGAGCAA+GGG - chr1_1:80496938-80496957 Msa0047550:intron 30.0%
AGAAACTTAAAGAGCAAAAC+CGG - chr1_1:80497251-80497270 Msa0047550:intron 30.0%
TTTGCTTTCAATGTTTCAAG+AGG - chr1_1:80497381-80497400 Msa0047550:intron 30.0%
GCGTTTGATAAATGATGTAA+TGG - chr1_1:80497468-80497487 Msa0047550:CDS 30.0%
TTTATACACACACAAACACT+TGG + chr1_1:80497581-80497600 None:intergenic 30.0%
AAGTGTTTGTGTGTGTATAA+AGG - chr1_1:80497580-80497599 Msa0047550:CDS 30.0%
TAAAATTGGTCCATCTGAAT+GGG + chr1_1:80497860-80497879 None:intergenic 30.0%
TTAAAATTGGTCCATCTGAA+TGG + chr1_1:80497861-80497880 None:intergenic 30.0%
! TCTTGGTTTGACAAAATTTC+CGG - chr1_1:80498129-80498148 Msa0047550:CDS 30.0%
! AATCGTTGTGTCAGATTTTT+AGG - chr1_1:80498253-80498272 Msa0047550:CDS 30.0%
! AGGGGGCTTTTTAAATTTAT+TGG + chr1_1:80498283-80498302 None:intergenic 30.0%
AGTTGCATCTACACTAAATA+GGG + chr1_1:80498302-80498321 None:intergenic 30.0%
TAGTTGCATCTACACTAAAT+AGG + chr1_1:80498303-80498322 None:intergenic 30.0%
! CGCTATTTCATTCTTCATTT+AGG + chr1_1:80498433-80498452 None:intergenic 30.0%
AGGTAAAAAGTGGAAAAAAG+TGG + chr1_1:80498650-80498669 None:intergenic 30.0%
TAGGACACAGAATATTCAAA+AGG + chr1_1:80498670-80498689 None:intergenic 30.0%
GTGAATCAAGCATATGTTAT+AGG + chr1_1:80498689-80498708 None:intergenic 30.0%
GTTACAAAACAATCACACAA+TGG + chr1_1:80498711-80498730 None:intergenic 30.0%
! TTTTCAAACCAACAGTTTAG+AGG - chr1_1:80498878-80498897 Msa0047550:CDS 30.0%
CCTGTTTACATTATCATCAT+CGG + chr1_1:80498921-80498940 None:intergenic 30.0%
! GATGATTTTGAATGGTATAC+TGG + chr1_1:80499032-80499051 None:intergenic 30.0%
! ACCATTCAAAATCATCCTTT+TGG - chr1_1:80499036-80499055 Msa0047550:CDS 30.0%
! TCCAAAAGGATGATTTTGAA+TGG + chr1_1:80499040-80499059 None:intergenic 30.0%
CAATAATCAAAGGCCAATTT+CGG + chr1_1:80499123-80499142 None:intergenic 30.0%
AGAAAAAATCCGTTAGTTCA+TGG + chr1_1:80499568-80499587 None:intergenic 30.0%
TGAATAGAAGAGGGAGTAAT+AGG + chr1_1:80495713-80495732 None:intergenic 35.0%
CAATTCGGTAGAAAAGAGAA+AGG + chr1_1:80495761-80495780 None:intergenic 35.0%
CCAACTTAACTACCAAGATT+AGG + chr1_1:80496012-80496031 None:intergenic 35.0%
! CCTAATCTTGGTAGTTAAGT+TGG - chr1_1:80496009-80496028 Msa0047550:three_prime_UTR 35.0%
! CACCATCTATGTTGTTTGTT+AGG - chr1_1:80496069-80496088 Msa0047550:three_prime_UTR 35.0%
! AACTGTGATGATGATGATGA+TGG - chr1_1:80496296-80496315 Msa0047550:CDS 35.0%
ACAAAGTAAAGTAGCTCAAG+GGG + chr1_1:80496398-80496417 None:intergenic 35.0%
! GTTGCTTTCATAGTTCTATG+TGG - chr1_1:80496461-80496480 Msa0047550:CDS 35.0%
CTCAATGCCTATACTTACTA+TGG - chr1_1:80496497-80496516 Msa0047550:CDS 35.0%
AAAAGAAGAGGAATCAAGGT+GGG + chr1_1:80496608-80496627 None:intergenic 35.0%
TTTCTTGAAGCAGAATGTGT+TGG - chr1_1:80496649-80496668 Msa0047550:intron 35.0%
AAGCAGAATGTGTTGGAATT+GGG - chr1_1:80496656-80496675 Msa0047550:intron 35.0%
TGGGATTATGAAGAAACAGA+AGG - chr1_1:80496688-80496707 Msa0047550:intron 35.0%
GATTATGAAGAAACAGAAGG+AGG - chr1_1:80496691-80496710 Msa0047550:intron 35.0%
GTTAGAGATAAGAAAGAGCA+AGG - chr1_1:80496937-80496956 Msa0047550:intron 35.0%
TAGAGATAAGAAAGAGCAAG+GGG - chr1_1:80496939-80496958 Msa0047550:intron 35.0%
!! AAATTTTAAAGGAGGGACAC+CGG - chr1_1:80497066-80497085 Msa0047550:intron 35.0%
TAAGATGTCTCAACAAACTC+CGG + chr1_1:80497088-80497107 None:intergenic 35.0%
GAAACTTAAAGAGCAAAACC+GGG - chr1_1:80497252-80497271 Msa0047550:intron 35.0%
GGAAATGTTTCAACTCTAAC+TGG + chr1_1:80497522-80497541 None:intergenic 35.0%
TTGTGTGTGTATAAAGGCTT+TGG - chr1_1:80497586-80497605 Msa0047550:CDS 35.0%
TCATCACCTATTACCATATC+AGG + chr1_1:80497640-80497659 None:intergenic 35.0%
TGATATGGTAATAGGTGATG+AGG - chr1_1:80497639-80497658 Msa0047550:CDS 35.0%
ACTTCTATCATCCTTATCTG+CGG + chr1_1:80497761-80497780 None:intergenic 35.0%
GATAAGGATGATAGAAGTTC+TGG - chr1_1:80497763-80497782 Msa0047550:CDS 35.0%
! TTTTGCAAATGCTGAAGCTT+AGG + chr1_1:80497927-80497946 None:intergenic 35.0%
ATTCAGATAATTGAGGCTAC+CGG + chr1_1:80498151-80498170 None:intergenic 35.0%
TGCGTATCTGTTTATGATGT+TGG - chr1_1:80498186-80498205 Msa0047550:CDS 35.0%
TTGCATCTACACTAAATAGG+GGG + chr1_1:80498300-80498319 None:intergenic 35.0%
GTTGCATCTACACTAAATAG+GGG + chr1_1:80498301-80498320 None:intergenic 35.0%
! ATGAAGAATGAAATAGCGGA+AGG - chr1_1:80498435-80498454 Msa0047550:CDS 35.0%
! TGAAGAATGAAATAGCGGAA+GGG - chr1_1:80498436-80498455 Msa0047550:CDS 35.0%
GGAGTAGAAACTTAATACAG+AGG + chr1_1:80498629-80498648 None:intergenic 35.0%
!! TTTCATGTACAGATGATGGA+AGG - chr1_1:80498746-80498765 Msa0047550:CDS 35.0%
!! AGATGATGGAAGGTAATATC+TGG - chr1_1:80498756-80498775 Msa0047550:CDS 35.0%
CTTCTTCTCAAGTTTCAATC+AGG - chr1_1:80498818-80498837 Msa0047550:CDS 35.0%
! CCGATGATGATAATGTAAAC+AGG - chr1_1:80498918-80498937 Msa0047550:CDS 35.0%
!!! TTCATCGGGTTTTGATTGTT+TGG - chr1_1:80498991-80499010 Msa0047550:CDS 35.0%
! GATTTTGAATGGTATACTGG+AGG + chr1_1:80499029-80499048 None:intergenic 35.0%
ACTTCAAAACCATCCATTTC+AGG + chr1_1:80499073-80499092 None:intergenic 35.0%
TTGAAGTTGCAAGGAAGATT+CGG - chr1_1:80499086-80499105 Msa0047550:CDS 35.0%
GCTGTAAGAGCAATAATCAA+AGG + chr1_1:80499133-80499152 None:intergenic 35.0%
AATACTGTTGAAGAGAACCT+GGG - chr1_1:80499338-80499357 Msa0047550:five_prime_UTR 35.0%
TTCAGTATGTTAGAAATCCC+AGG + chr1_1:80499358-80499377 None:intergenic 35.0%
! ATTTTGCCGCATTATGAATC+AGG - chr1_1:80499418-80499437 Msa0047550:five_prime_UTR 35.0%
! TTTTGCCGCATTATGAATCA+GGG - chr1_1:80499419-80499438 Msa0047550:five_prime_UTR 35.0%
TGAATAGAAGAGGGAGTAAT+AGG + chr1_1:80495713-80495732 None:intergenic 35.0%
CAATTCGGTAGAAAAGAGAA+AGG + chr1_1:80495761-80495780 None:intergenic 35.0%
CCAACTTAACTACCAAGATT+AGG + chr1_1:80496012-80496031 None:intergenic 35.0%
! CCTAATCTTGGTAGTTAAGT+TGG - chr1_1:80496009-80496028 Msa0047550:three_prime_UTR 35.0%
! CACCATCTATGTTGTTTGTT+AGG - chr1_1:80496069-80496088 Msa0047550:three_prime_UTR 35.0%
! AACTGTGATGATGATGATGA+TGG - chr1_1:80496296-80496315 Msa0047550:CDS 35.0%
ACAAAGTAAAGTAGCTCAAG+GGG + chr1_1:80496398-80496417 None:intergenic 35.0%
! GTTGCTTTCATAGTTCTATG+TGG - chr1_1:80496461-80496480 Msa0047550:CDS 35.0%
CTCAATGCCTATACTTACTA+TGG - chr1_1:80496497-80496516 Msa0047550:CDS 35.0%
AAAAGAAGAGGAATCAAGGT+GGG + chr1_1:80496608-80496627 None:intergenic 35.0%
TTTCTTGAAGCAGAATGTGT+TGG - chr1_1:80496649-80496668 Msa0047550:intron 35.0%
AAGCAGAATGTGTTGGAATT+GGG - chr1_1:80496656-80496675 Msa0047550:intron 35.0%
TGGGATTATGAAGAAACAGA+AGG - chr1_1:80496688-80496707 Msa0047550:intron 35.0%
GATTATGAAGAAACAGAAGG+AGG - chr1_1:80496691-80496710 Msa0047550:intron 35.0%
GTTAGAGATAAGAAAGAGCA+AGG - chr1_1:80496937-80496956 Msa0047550:intron 35.0%
TAGAGATAAGAAAGAGCAAG+GGG - chr1_1:80496939-80496958 Msa0047550:intron 35.0%
!! AAATTTTAAAGGAGGGACAC+CGG - chr1_1:80497066-80497085 Msa0047550:intron 35.0%
TAAGATGTCTCAACAAACTC+CGG + chr1_1:80497088-80497107 None:intergenic 35.0%
GAAACTTAAAGAGCAAAACC+GGG - chr1_1:80497252-80497271 Msa0047550:intron 35.0%
GGAAATGTTTCAACTCTAAC+TGG + chr1_1:80497522-80497541 None:intergenic 35.0%
TTGTGTGTGTATAAAGGCTT+TGG - chr1_1:80497586-80497605 Msa0047550:CDS 35.0%
TCATCACCTATTACCATATC+AGG + chr1_1:80497640-80497659 None:intergenic 35.0%
TGATATGGTAATAGGTGATG+AGG - chr1_1:80497639-80497658 Msa0047550:CDS 35.0%
ACTTCTATCATCCTTATCTG+CGG + chr1_1:80497761-80497780 None:intergenic 35.0%
GATAAGGATGATAGAAGTTC+TGG - chr1_1:80497763-80497782 Msa0047550:CDS 35.0%
! TTTTGCAAATGCTGAAGCTT+AGG + chr1_1:80497927-80497946 None:intergenic 35.0%
ATTCAGATAATTGAGGCTAC+CGG + chr1_1:80498151-80498170 None:intergenic 35.0%
TGCGTATCTGTTTATGATGT+TGG - chr1_1:80498186-80498205 Msa0047550:CDS 35.0%
TTGCATCTACACTAAATAGG+GGG + chr1_1:80498300-80498319 None:intergenic 35.0%
GTTGCATCTACACTAAATAG+GGG + chr1_1:80498301-80498320 None:intergenic 35.0%
! ATGAAGAATGAAATAGCGGA+AGG - chr1_1:80498435-80498454 Msa0047550:CDS 35.0%
! TGAAGAATGAAATAGCGGAA+GGG - chr1_1:80498436-80498455 Msa0047550:CDS 35.0%
GGAGTAGAAACTTAATACAG+AGG + chr1_1:80498629-80498648 None:intergenic 35.0%
!! TTTCATGTACAGATGATGGA+AGG - chr1_1:80498746-80498765 Msa0047550:CDS 35.0%
!! AGATGATGGAAGGTAATATC+TGG - chr1_1:80498756-80498775 Msa0047550:CDS 35.0%
CTTCTTCTCAAGTTTCAATC+AGG - chr1_1:80498818-80498837 Msa0047550:CDS 35.0%
! CCGATGATGATAATGTAAAC+AGG - chr1_1:80498918-80498937 Msa0047550:CDS 35.0%
!!! TTCATCGGGTTTTGATTGTT+TGG - chr1_1:80498991-80499010 Msa0047550:CDS 35.0%
! GATTTTGAATGGTATACTGG+AGG + chr1_1:80499029-80499048 None:intergenic 35.0%
ACTTCAAAACCATCCATTTC+AGG + chr1_1:80499073-80499092 None:intergenic 35.0%
TTGAAGTTGCAAGGAAGATT+CGG - chr1_1:80499086-80499105 Msa0047550:CDS 35.0%
GCTGTAAGAGCAATAATCAA+AGG + chr1_1:80499133-80499152 None:intergenic 35.0%
AATACTGTTGAAGAGAACCT+GGG - chr1_1:80499338-80499357 Msa0047550:five_prime_UTR 35.0%
TTCAGTATGTTAGAAATCCC+AGG + chr1_1:80499358-80499377 None:intergenic 35.0%
! ATTTTGCCGCATTATGAATC+AGG - chr1_1:80499418-80499437 Msa0047550:five_prime_UTR 35.0%
! TTTTGCCGCATTATGAATCA+GGG - chr1_1:80499419-80499438 Msa0047550:five_prime_UTR 35.0%
AGAAGAGGGAGTAATAGGAA+GGG + chr1_1:80495708-80495727 None:intergenic 40.0%
TAGAAGAGGGAGTAATAGGA+AGG + chr1_1:80495709-80495728 None:intergenic 40.0%
ATGAGGGCCATAGTAAGTAT+AGG + chr1_1:80496507-80496526 None:intergenic 40.0%
AAAGAAGAGGAATCAAGGTG+GGG + chr1_1:80496607-80496626 None:intergenic 40.0%
CAAAAGAAGAGGAATCAAGG+TGG + chr1_1:80496609-80496628 None:intergenic 40.0%
GAAGCAGAATGTGTTGGAAT+TGG - chr1_1:80496655-80496674 Msa0047550:intron 40.0%
AGCAGAATGTGTTGGAATTG+GGG - chr1_1:80496657-80496676 Msa0047550:intron 40.0%
TTTGGAAAGCTCAACAAGTG+TGG + chr1_1:80496786-80496805 None:intergenic 40.0%
ATTATGCAACTCCAAGGCTT+TGG + chr1_1:80496804-80496823 None:intergenic 40.0%
CTTGGAGTTGCATAATTGTG+CGG - chr1_1:80496808-80496827 Msa0047550:intron 40.0%
AGTTGCATAATTGTGCGGTT+TGG - chr1_1:80496813-80496832 Msa0047550:intron 40.0%
AGAGATAAGAAAGAGCAAGG+GGG - chr1_1:80496940-80496959 Msa0047550:intron 40.0%
!! ATGAAGTATCGGCATACGAA+TGG + chr1_1:80497041-80497060 None:intergenic 40.0%
TTCTTCCGAAATCGAACTCA+AGG - chr1_1:80497125-80497144 Msa0047550:intron 40.0%
CAAAGCCTTGAGTTCGATTT+CGG + chr1_1:80497133-80497152 None:intergenic 40.0%
AAGAACAGATGCATGAGACA+AGG + chr1_1:80497209-80497228 None:intergenic 40.0%
TTTGAGAAAGTGATGAGCCA+TGG - chr1_1:80497328-80497347 Msa0047550:intron 40.0%
AGACCTTTGCATTCAATCCT+GGG - chr1_1:80497358-80497377 Msa0047550:intron 40.0%
AAACCCAGGATTGAATGCAA+AGG + chr1_1:80497364-80497383 None:intergenic 40.0%
GAAACATTGAAAGCAAACCC+AGG + chr1_1:80497378-80497397 None:intergenic 40.0%
GAAATTTCAGCCAACGACAA+AGG - chr1_1:80497490-80497509 Msa0047550:CDS 40.0%
TCCTTGCCTGATATGGTAAT+AGG - chr1_1:80497631-80497650 Msa0047550:CDS 40.0%
ACCTATTACCATATCAGGCA+AGG + chr1_1:80497635-80497654 None:intergenic 40.0%
TGAAAGTGATACCGCAGATA+AGG - chr1_1:80497747-80497766 Msa0047550:CDS 40.0%
CACAACAATGAACCTAAGGA+GGG - chr1_1:80497901-80497920 Msa0047550:CDS 40.0%
CTTCAGCATTTGCAAAACAC+TGG - chr1_1:80497930-80497949 Msa0047550:CDS 40.0%
CTCATACTTTGTCAAAGGTG+GGG + chr1_1:80498030-80498049 None:intergenic 40.0%
GCTCATACTTTGTCAAAGGT+GGG + chr1_1:80498031-80498050 None:intergenic 40.0%
AGCTCATACTTTGTCAAAGG+TGG + chr1_1:80498032-80498051 None:intergenic 40.0%
AGCAGCTCATACTTTGTCAA+AGG + chr1_1:80498035-80498054 None:intergenic 40.0%
! GAACTACATTTTACGCACAG+AGG - chr1_1:80498101-80498120 Msa0047550:CDS 40.0%
CATCATAAACAGATACGCAC+AGG + chr1_1:80498185-80498204 None:intergenic 40.0%
AGATGCAACTAATTGCATGC+AGG - chr1_1:80498312-80498331 Msa0047550:CDS 40.0%
GATGCAACTAATTGCATGCA+GGG - chr1_1:80498313-80498332 Msa0047550:CDS 40.0%
TGGATATCACCAAACTCTCT+GGG - chr1_1:80498776-80498795 Msa0047550:CDS 40.0%
TTTCAATCAGGATCATCGCA+TGG - chr1_1:80498830-80498849 Msa0047550:CDS 40.0%
CGTTAAGACCTCTAAACTGT+TGG + chr1_1:80498889-80498908 None:intergenic 40.0%
! TCAAGTAACCGCTGTTTCAT+CGG - chr1_1:80498976-80498995 Msa0047550:CDS 40.0%
ATCAAAACCCGATGAAACAG+CGG + chr1_1:80498987-80499006 None:intergenic 40.0%
CAGGCATTTGAAGATCCAAA+AGG + chr1_1:80499054-80499073 None:intergenic 40.0%
GGATCTTCAAATGCCTGAAA+TGG - chr1_1:80499057-80499076 Msa0047550:CDS 40.0%
CTTCAAATGCCTGAAATGGA+TGG - chr1_1:80499061-80499080 Msa0047550:CDS 40.0%
!!! TGGATGGTTTTGAAGTTGCA+AGG - chr1_1:80499077-80499096 Msa0047550:CDS 40.0%
AAGTGCAGAAGAACGCATAA+AGG - chr1_1:80499153-80499172 Msa0047550:CDS 40.0%
GTTCGTTAGCTATCTCATGA+AGG + chr1_1:80499228-80499247 None:intergenic 40.0%
CAATACTGTTGAAGAGAACC+TGG - chr1_1:80499337-80499356 Msa0047550:five_prime_UTR 40.0%
CATCTTTCTTTGTTCGACAG+TGG + chr1_1:80499473-80499492 None:intergenic 40.0%
CAGTACTCACTGTCTAATGT+AGG + chr1_1:80499645-80499664 None:intergenic 40.0%
!! TTTTGGGAAACATTGCCTCA+AGG + chr1_1:80499725-80499744 None:intergenic 40.0%
AGAAGAGGGAGTAATAGGAA+GGG + chr1_1:80495708-80495727 None:intergenic 40.0%
TAGAAGAGGGAGTAATAGGA+AGG + chr1_1:80495709-80495728 None:intergenic 40.0%
ATGAGGGCCATAGTAAGTAT+AGG + chr1_1:80496507-80496526 None:intergenic 40.0%
AAAGAAGAGGAATCAAGGTG+GGG + chr1_1:80496607-80496626 None:intergenic 40.0%
CAAAAGAAGAGGAATCAAGG+TGG + chr1_1:80496609-80496628 None:intergenic 40.0%
GAAGCAGAATGTGTTGGAAT+TGG - chr1_1:80496655-80496674 Msa0047550:intron 40.0%
AGCAGAATGTGTTGGAATTG+GGG - chr1_1:80496657-80496676 Msa0047550:intron 40.0%
TTTGGAAAGCTCAACAAGTG+TGG + chr1_1:80496786-80496805 None:intergenic 40.0%
ATTATGCAACTCCAAGGCTT+TGG + chr1_1:80496804-80496823 None:intergenic 40.0%
CTTGGAGTTGCATAATTGTG+CGG - chr1_1:80496808-80496827 Msa0047550:intron 40.0%
AGTTGCATAATTGTGCGGTT+TGG - chr1_1:80496813-80496832 Msa0047550:intron 40.0%
AGAGATAAGAAAGAGCAAGG+GGG - chr1_1:80496940-80496959 Msa0047550:intron 40.0%
!! ATGAAGTATCGGCATACGAA+TGG + chr1_1:80497041-80497060 None:intergenic 40.0%
TTCTTCCGAAATCGAACTCA+AGG - chr1_1:80497125-80497144 Msa0047550:intron 40.0%
CAAAGCCTTGAGTTCGATTT+CGG + chr1_1:80497133-80497152 None:intergenic 40.0%
AAGAACAGATGCATGAGACA+AGG + chr1_1:80497209-80497228 None:intergenic 40.0%
TTTGAGAAAGTGATGAGCCA+TGG - chr1_1:80497328-80497347 Msa0047550:intron 40.0%
AGACCTTTGCATTCAATCCT+GGG - chr1_1:80497358-80497377 Msa0047550:intron 40.0%
AAACCCAGGATTGAATGCAA+AGG + chr1_1:80497364-80497383 None:intergenic 40.0%
GAAACATTGAAAGCAAACCC+AGG + chr1_1:80497378-80497397 None:intergenic 40.0%
GAAATTTCAGCCAACGACAA+AGG - chr1_1:80497490-80497509 Msa0047550:CDS 40.0%
TCCTTGCCTGATATGGTAAT+AGG - chr1_1:80497631-80497650 Msa0047550:CDS 40.0%
ACCTATTACCATATCAGGCA+AGG + chr1_1:80497635-80497654 None:intergenic 40.0%
TGAAAGTGATACCGCAGATA+AGG - chr1_1:80497747-80497766 Msa0047550:CDS 40.0%
CACAACAATGAACCTAAGGA+GGG - chr1_1:80497901-80497920 Msa0047550:CDS 40.0%
CTTCAGCATTTGCAAAACAC+TGG - chr1_1:80497930-80497949 Msa0047550:CDS 40.0%
CTCATACTTTGTCAAAGGTG+GGG + chr1_1:80498030-80498049 None:intergenic 40.0%
GCTCATACTTTGTCAAAGGT+GGG + chr1_1:80498031-80498050 None:intergenic 40.0%
AGCTCATACTTTGTCAAAGG+TGG + chr1_1:80498032-80498051 None:intergenic 40.0%
AGCAGCTCATACTTTGTCAA+AGG + chr1_1:80498035-80498054 None:intergenic 40.0%
! GAACTACATTTTACGCACAG+AGG - chr1_1:80498101-80498120 Msa0047550:CDS 40.0%
CATCATAAACAGATACGCAC+AGG + chr1_1:80498185-80498204 None:intergenic 40.0%
AGATGCAACTAATTGCATGC+AGG - chr1_1:80498312-80498331 Msa0047550:CDS 40.0%
GATGCAACTAATTGCATGCA+GGG - chr1_1:80498313-80498332 Msa0047550:CDS 40.0%
TGGATATCACCAAACTCTCT+GGG - chr1_1:80498776-80498795 Msa0047550:CDS 40.0%
TTTCAATCAGGATCATCGCA+TGG - chr1_1:80498830-80498849 Msa0047550:CDS 40.0%
CGTTAAGACCTCTAAACTGT+TGG + chr1_1:80498889-80498908 None:intergenic 40.0%
! TCAAGTAACCGCTGTTTCAT+CGG - chr1_1:80498976-80498995 Msa0047550:CDS 40.0%
ATCAAAACCCGATGAAACAG+CGG + chr1_1:80498987-80499006 None:intergenic 40.0%
CAGGCATTTGAAGATCCAAA+AGG + chr1_1:80499054-80499073 None:intergenic 40.0%
GGATCTTCAAATGCCTGAAA+TGG - chr1_1:80499057-80499076 Msa0047550:CDS 40.0%
CTTCAAATGCCTGAAATGGA+TGG - chr1_1:80499061-80499080 Msa0047550:CDS 40.0%
!!! TGGATGGTTTTGAAGTTGCA+AGG - chr1_1:80499077-80499096 Msa0047550:CDS 40.0%
AAGTGCAGAAGAACGCATAA+AGG - chr1_1:80499153-80499172 Msa0047550:CDS 40.0%
GTTCGTTAGCTATCTCATGA+AGG + chr1_1:80499228-80499247 None:intergenic 40.0%
CAATACTGTTGAAGAGAACC+TGG - chr1_1:80499337-80499356 Msa0047550:five_prime_UTR 40.0%
CATCTTTCTTTGTTCGACAG+TGG + chr1_1:80499473-80499492 None:intergenic 40.0%
CAGTACTCACTGTCTAATGT+AGG + chr1_1:80499645-80499664 None:intergenic 40.0%
!! TTTTGGGAAACATTGCCTCA+AGG + chr1_1:80499725-80499744 None:intergenic 40.0%
AAGACAAAGACAGGGGTTGT+GGG + chr1_1:80495668-80495687 None:intergenic 45.0%
AGGAAGGAAGACAAAGACAG+GGG + chr1_1:80495675-80495694 None:intergenic 45.0%
GAGGAAGGAAGACAAAGACA+GGG + chr1_1:80495676-80495695 None:intergenic 45.0%
AGAGGAAGGAAGACAAAGAC+AGG + chr1_1:80495677-80495696 None:intergenic 45.0%
GGGAGTAATAGGAAGGGAAA+GGG + chr1_1:80495702-80495721 None:intergenic 45.0%
AGGGAGTAATAGGAAGGGAA+AGG + chr1_1:80495703-80495722 None:intergenic 45.0%
GTAAAGTAGCTCAAGGGGTA+TGG + chr1_1:80496393-80496412 None:intergenic 45.0%
TGCAGTGGCACATGAAACAA+GGG + chr1_1:80496576-80496595 None:intergenic 45.0%
TTGCAGTGGCACATGAAACA+AGG + chr1_1:80496577-80496596 None:intergenic 45.0%
AGAAACAGAAGGAGGCTAGT+TGG - chr1_1:80496699-80496718 Msa0047550:intron 45.0%
CAAAGACTTCCTAATCTCGC+GGG + chr1_1:80496741-80496760 None:intergenic 45.0%
CCAAAGACTTCCTAATCTCG+CGG + chr1_1:80496742-80496761 None:intergenic 45.0%
TGTTGAGCTTTCCAAAGCCT+TGG - chr1_1:80496790-80496809 Msa0047550:intron 45.0%
CGCACAATTATGCAACTCCA+AGG + chr1_1:80496810-80496829 None:intergenic 45.0%
GATGCCTGATGAGGATAGAA+GGG - chr1_1:80496835-80496854 Msa0047550:intron 45.0%
ATCACCCTTCTATCCTCATC+AGG + chr1_1:80496842-80496861 None:intergenic 45.0%
! TCATGAGTTGAAGCCGAATC+CGG - chr1_1:80496871-80496890 Msa0047550:intron 45.0%
TGAAAACTCTTCGCCGGATT+CGG + chr1_1:80496887-80496906 None:intergenic 45.0%
GAGCTATGAAAACTCTTCGC+CGG + chr1_1:80496893-80496912 None:intergenic 45.0%
CGAAATCGAACTCAAGGCTT+TGG - chr1_1:80497131-80497150 Msa0047550:intron 45.0%
CACTATCTCCATCTCATGGT+GGG + chr1_1:80497158-80497177 None:intergenic 45.0%
! GGCACAAAAGCATGCAATGA+TGG - chr1_1:80497285-80497304 Msa0047550:intron 45.0%
AAGTGATGAGCCATGGAATG+AGG - chr1_1:80497335-80497354 Msa0047550:intron 45.0%
GAGACCTTTGCATTCAATCC+TGG - chr1_1:80497357-80497376 Msa0047550:intron 45.0%
CTGGAAACTTCCTTTGTCGT+TGG + chr1_1:80497503-80497522 None:intergenic 45.0%
TCCATCTACATTCCACGATG+AGG - chr1_1:80497539-80497558 Msa0047550:CDS 45.0%
CCATCTACATTCCACGATGA+GGG - chr1_1:80497540-80497559 Msa0047550:CDS 45.0%
TGGTAATAGGTGATGAGGCA+AGG - chr1_1:80497644-80497663 Msa0047550:CDS 45.0%
GGGAACTAGTACCAGTTATC+TGG + chr1_1:80497840-80497859 None:intergenic 45.0%
GGTACTAGTTCCCATTCAGA+TGG - chr1_1:80497847-80497866 Msa0047550:CDS 45.0%
GCACCACAACAATGAACCTA+AGG - chr1_1:80497897-80497916 Msa0047550:CDS 45.0%
CCTCCTTAGGTTCATTGTTG+TGG + chr1_1:80497903-80497922 None:intergenic 45.0%
CCACAACAATGAACCTAAGG+AGG - chr1_1:80497900-80497919 Msa0047550:CDS 45.0%
CATTTGCAAAACACTGGTGC+AGG - chr1_1:80497936-80497955 Msa0047550:CDS 45.0%
AAAAAGACTCAGCCTGTGCT+TGG - chr1_1:80498524-80498543 Msa0047550:CDS 45.0%
AGCTGCACGTTTAGTGAGAA+GGG - chr1_1:80498567-80498586 Msa0047550:CDS 45.0%
CTGGATATCACCAAACTCTC+TGG - chr1_1:80498775-80498794 Msa0047550:CDS 45.0%
ATCACCAAACTCTCTGGGTT+TGG - chr1_1:80498781-80498800 Msa0047550:CDS 45.0%
TAAGAAGCTGCTTGAGAAGC+TGG - chr1_1:80498949-80498968 Msa0047550:CDS 45.0%
AAGAAGCTGCTTGAGAAGCT+GGG - chr1_1:80498950-80498969 Msa0047550:CDS 45.0%
! CAAGTAACCGCTGTTTCATC+GGG - chr1_1:80498977-80498996 Msa0047550:CDS 45.0%
GGAAGTTCCAAAGCCGAAAT+TGG - chr1_1:80499107-80499126 Msa0047550:CDS 45.0%
TCAAAGGCCAATTTCGGCTT+TGG + chr1_1:80499117-80499136 None:intergenic 45.0%
CATAAAGGAGAGATGCCTAC+AGG - chr1_1:80499168-80499187 Msa0047550:CDS 45.0%
ATCCATTCATTCCCACCTGT+AGG + chr1_1:80499186-80499205 None:intergenic 45.0%
GCTATCTCATGAAGGAGGAT+AGG + chr1_1:80499220-80499239 None:intergenic 45.0%
CGTTAGCTATCTCATGAAGG+AGG + chr1_1:80499225-80499244 None:intergenic 45.0%
GAGAGCCCTGATTCATAATG+CGG + chr1_1:80499427-80499446 None:intergenic 45.0%
GTAAGCATCTCCGTACTCTT+TGG + chr1_1:80499451-80499470 None:intergenic 45.0%
! TCTGCAAGTCTGAAACCTTG+AGG - chr1_1:80499707-80499726 Msa0047550:five_prime_UTR 45.0%
AAGACAAAGACAGGGGTTGT+GGG + chr1_1:80495668-80495687 None:intergenic 45.0%
AGGAAGGAAGACAAAGACAG+GGG + chr1_1:80495675-80495694 None:intergenic 45.0%
GAGGAAGGAAGACAAAGACA+GGG + chr1_1:80495676-80495695 None:intergenic 45.0%
AGAGGAAGGAAGACAAAGAC+AGG + chr1_1:80495677-80495696 None:intergenic 45.0%
GGGAGTAATAGGAAGGGAAA+GGG + chr1_1:80495702-80495721 None:intergenic 45.0%
AGGGAGTAATAGGAAGGGAA+AGG + chr1_1:80495703-80495722 None:intergenic 45.0%
GTAAAGTAGCTCAAGGGGTA+TGG + chr1_1:80496393-80496412 None:intergenic 45.0%
TGCAGTGGCACATGAAACAA+GGG + chr1_1:80496576-80496595 None:intergenic 45.0%
TTGCAGTGGCACATGAAACA+AGG + chr1_1:80496577-80496596 None:intergenic 45.0%
AGAAACAGAAGGAGGCTAGT+TGG - chr1_1:80496699-80496718 Msa0047550:intron 45.0%
CAAAGACTTCCTAATCTCGC+GGG + chr1_1:80496741-80496760 None:intergenic 45.0%
CCAAAGACTTCCTAATCTCG+CGG + chr1_1:80496742-80496761 None:intergenic 45.0%
TGTTGAGCTTTCCAAAGCCT+TGG - chr1_1:80496790-80496809 Msa0047550:intron 45.0%
CGCACAATTATGCAACTCCA+AGG + chr1_1:80496810-80496829 None:intergenic 45.0%
GATGCCTGATGAGGATAGAA+GGG - chr1_1:80496835-80496854 Msa0047550:intron 45.0%
ATCACCCTTCTATCCTCATC+AGG + chr1_1:80496842-80496861 None:intergenic 45.0%
! TCATGAGTTGAAGCCGAATC+CGG - chr1_1:80496871-80496890 Msa0047550:intron 45.0%
TGAAAACTCTTCGCCGGATT+CGG + chr1_1:80496887-80496906 None:intergenic 45.0%
GAGCTATGAAAACTCTTCGC+CGG + chr1_1:80496893-80496912 None:intergenic 45.0%
CGAAATCGAACTCAAGGCTT+TGG - chr1_1:80497131-80497150 Msa0047550:intron 45.0%
CACTATCTCCATCTCATGGT+GGG + chr1_1:80497158-80497177 None:intergenic 45.0%
! GGCACAAAAGCATGCAATGA+TGG - chr1_1:80497285-80497304 Msa0047550:intron 45.0%
AAGTGATGAGCCATGGAATG+AGG - chr1_1:80497335-80497354 Msa0047550:intron 45.0%
GAGACCTTTGCATTCAATCC+TGG - chr1_1:80497357-80497376 Msa0047550:intron 45.0%
CTGGAAACTTCCTTTGTCGT+TGG + chr1_1:80497503-80497522 None:intergenic 45.0%
TCCATCTACATTCCACGATG+AGG - chr1_1:80497539-80497558 Msa0047550:CDS 45.0%
CCATCTACATTCCACGATGA+GGG - chr1_1:80497540-80497559 Msa0047550:CDS 45.0%
TGGTAATAGGTGATGAGGCA+AGG - chr1_1:80497644-80497663 Msa0047550:CDS 45.0%
GGGAACTAGTACCAGTTATC+TGG + chr1_1:80497840-80497859 None:intergenic 45.0%
GGTACTAGTTCCCATTCAGA+TGG - chr1_1:80497847-80497866 Msa0047550:CDS 45.0%
GCACCACAACAATGAACCTA+AGG - chr1_1:80497897-80497916 Msa0047550:CDS 45.0%
CCTCCTTAGGTTCATTGTTG+TGG + chr1_1:80497903-80497922 None:intergenic 45.0%
CCACAACAATGAACCTAAGG+AGG - chr1_1:80497900-80497919 Msa0047550:CDS 45.0%
CATTTGCAAAACACTGGTGC+AGG - chr1_1:80497936-80497955 Msa0047550:CDS 45.0%
AAAAAGACTCAGCCTGTGCT+TGG - chr1_1:80498524-80498543 Msa0047550:CDS 45.0%
AGCTGCACGTTTAGTGAGAA+GGG - chr1_1:80498567-80498586 Msa0047550:CDS 45.0%
CTGGATATCACCAAACTCTC+TGG - chr1_1:80498775-80498794 Msa0047550:CDS 45.0%
ATCACCAAACTCTCTGGGTT+TGG - chr1_1:80498781-80498800 Msa0047550:CDS 45.0%
TAAGAAGCTGCTTGAGAAGC+TGG - chr1_1:80498949-80498968 Msa0047550:CDS 45.0%
AAGAAGCTGCTTGAGAAGCT+GGG - chr1_1:80498950-80498969 Msa0047550:CDS 45.0%
! CAAGTAACCGCTGTTTCATC+GGG - chr1_1:80498977-80498996 Msa0047550:CDS 45.0%
GGAAGTTCCAAAGCCGAAAT+TGG - chr1_1:80499107-80499126 Msa0047550:CDS 45.0%
TCAAAGGCCAATTTCGGCTT+TGG + chr1_1:80499117-80499136 None:intergenic 45.0%
CATAAAGGAGAGATGCCTAC+AGG - chr1_1:80499168-80499187 Msa0047550:CDS 45.0%
ATCCATTCATTCCCACCTGT+AGG + chr1_1:80499186-80499205 None:intergenic 45.0%
GCTATCTCATGAAGGAGGAT+AGG + chr1_1:80499220-80499239 None:intergenic 45.0%
CGTTAGCTATCTCATGAAGG+AGG + chr1_1:80499225-80499244 None:intergenic 45.0%
GAGAGCCCTGATTCATAATG+CGG + chr1_1:80499427-80499446 None:intergenic 45.0%
GTAAGCATCTCCGTACTCTT+TGG + chr1_1:80499451-80499470 None:intergenic 45.0%
! TCTGCAAGTCTGAAACCTTG+AGG - chr1_1:80499707-80499726 Msa0047550:five_prime_UTR 45.0%
GAAGACAAAGACAGGGGTTG+TGG + chr1_1:80495669-80495688 None:intergenic 50.0%
ATAGGAAGGGAAAGGGAGAG+AGG + chr1_1:80495695-80495714 None:intergenic 50.0%
CACATGAAACAAGGGCAGTG+AGG + chr1_1:80496568-80496587 None:intergenic 50.0%
GGTGGGGAAAGTAATTGCAG+TGG + chr1_1:80496591-80496610 None:intergenic 50.0%
TGTGTTGGAATTGGGGCAAG+AGG - chr1_1:80496664-80496683 Msa0047550:intron 50.0%
TTGGAATTGGGGCAAGAGGT+TGG - chr1_1:80496668-80496687 Msa0047550:intron 50.0%
TGGAATTGGGGCAAGAGGTT+GGG - chr1_1:80496669-80496688 Msa0047550:intron 50.0%
! AGGAGGCTAGTTGGCATGTT+AGG - chr1_1:80496708-80496727 Msa0047550:intron 50.0%
CCGCGAGATTAGGAAGTCTT+TGG - chr1_1:80496739-80496758 Msa0047550:intron 50.0%
GGATGCCTGATGAGGATAGA+AGG - chr1_1:80496834-80496853 Msa0047550:intron 50.0%
TTGAGGCCTGATTCTGCACT+CGG - chr1_1:80496971-80496990 Msa0047550:intron 50.0%
CTGCGAGTAGTGGTGAATCT+GGG - chr1_1:80496996-80497015 Msa0047550:intron 50.0%
TGCGAGTAGTGGTGAATCTG+GGG - chr1_1:80496997-80497016 Msa0047550:intron 50.0%
CCACTATCTCCATCTCATGG+TGG + chr1_1:80497159-80497178 None:intergenic 50.0%
CCACCATGAGATGGAGATAG+TGG - chr1_1:80497156-80497175 Msa0047550:intron 50.0%
CCTCCACTATCTCCATCTCA+TGG + chr1_1:80497162-80497181 None:intergenic 50.0%
! CCATGAGATGGAGATAGTGG+AGG - chr1_1:80497159-80497178 Msa0047550:intron 50.0%
TCTCAAATGAGCTCCTTGCC+TGG + chr1_1:80497315-80497334 None:intergenic 50.0%
GCAAAGGTCTCCTCATTCCA+TGG + chr1_1:80497348-80497367 None:intergenic 50.0%
CCCTCATCGTGGAATGTAGA+TGG + chr1_1:80497543-80497562 None:intergenic 50.0%
GCAGAGATCCTTGCCTGATA+TGG - chr1_1:80497624-80497643 Msa0047550:CDS 50.0%
ACTTTGTCAAAGGTGGGGAG+AGG + chr1_1:80498025-80498044 None:intergenic 50.0%
TACGCACAGAGGATGACTCT+TGG - chr1_1:80498112-80498131 Msa0047550:CDS 50.0%
CAGCTGCACGTTTAGTGAGA+AGG - chr1_1:80498566-80498585 Msa0047550:CDS 50.0%
! ACGTTTAGTGAGAAGGGCAC+TGG - chr1_1:80498573-80498592 Msa0047550:CDS 50.0%
!! CGTTTAGTGAGAAGGGCACT+GGG - chr1_1:80498574-80498593 Msa0047550:CDS 50.0%
TGTGCCAAACCCAGAGAGTT+TGG + chr1_1:80498788-80498807 None:intergenic 50.0%
AACTCTCTGGGTTTGGCACA+AGG - chr1_1:80498788-80498807 Msa0047550:CDS 50.0%
ACTCTCTGGGTTTGGCACAA+GGG - chr1_1:80498789-80498808 Msa0047550:CDS 50.0%
AAAGGAGAGATGCCTACAGG+TGG - chr1_1:80499171-80499190 Msa0047550:CDS 50.0%
AAGGAGAGATGCCTACAGGT+GGG - chr1_1:80499172-80499191 Msa0047550:CDS 50.0%
TGCCTACAGGTGGGAATGAA+TGG - chr1_1:80499181-80499200 Msa0047550:CDS 50.0%
! ACTTTTCACCTGCACGTAGC+AGG + chr1_1:80499261-80499280 None:intergenic 50.0%
AGGGCTCTCTCCAAAGAGTA+CGG - chr1_1:80499438-80499457 Msa0047550:five_prime_UTR 50.0%
GAAGACAAAGACAGGGGTTG+TGG + chr1_1:80495669-80495688 None:intergenic 50.0%
ATAGGAAGGGAAAGGGAGAG+AGG + chr1_1:80495695-80495714 None:intergenic 50.0%
CACATGAAACAAGGGCAGTG+AGG + chr1_1:80496568-80496587 None:intergenic 50.0%
GGTGGGGAAAGTAATTGCAG+TGG + chr1_1:80496591-80496610 None:intergenic 50.0%
TGTGTTGGAATTGGGGCAAG+AGG - chr1_1:80496664-80496683 Msa0047550:intron 50.0%
TTGGAATTGGGGCAAGAGGT+TGG - chr1_1:80496668-80496687 Msa0047550:intron 50.0%
TGGAATTGGGGCAAGAGGTT+GGG - chr1_1:80496669-80496688 Msa0047550:intron 50.0%
! AGGAGGCTAGTTGGCATGTT+AGG - chr1_1:80496708-80496727 Msa0047550:intron 50.0%
CCGCGAGATTAGGAAGTCTT+TGG - chr1_1:80496739-80496758 Msa0047550:intron 50.0%
GGATGCCTGATGAGGATAGA+AGG - chr1_1:80496834-80496853 Msa0047550:intron 50.0%
TTGAGGCCTGATTCTGCACT+CGG - chr1_1:80496971-80496990 Msa0047550:intron 50.0%
CTGCGAGTAGTGGTGAATCT+GGG - chr1_1:80496996-80497015 Msa0047550:intron 50.0%
TGCGAGTAGTGGTGAATCTG+GGG - chr1_1:80496997-80497016 Msa0047550:intron 50.0%
CCACTATCTCCATCTCATGG+TGG + chr1_1:80497159-80497178 None:intergenic 50.0%
CCACCATGAGATGGAGATAG+TGG - chr1_1:80497156-80497175 Msa0047550:intron 50.0%
CCTCCACTATCTCCATCTCA+TGG + chr1_1:80497162-80497181 None:intergenic 50.0%
! CCATGAGATGGAGATAGTGG+AGG - chr1_1:80497159-80497178 Msa0047550:intron 50.0%
TCTCAAATGAGCTCCTTGCC+TGG + chr1_1:80497315-80497334 None:intergenic 50.0%
GCAAAGGTCTCCTCATTCCA+TGG + chr1_1:80497348-80497367 None:intergenic 50.0%
CCCTCATCGTGGAATGTAGA+TGG + chr1_1:80497543-80497562 None:intergenic 50.0%
GCAGAGATCCTTGCCTGATA+TGG - chr1_1:80497624-80497643 Msa0047550:CDS 50.0%
ACTTTGTCAAAGGTGGGGAG+AGG + chr1_1:80498025-80498044 None:intergenic 50.0%
TACGCACAGAGGATGACTCT+TGG - chr1_1:80498112-80498131 Msa0047550:CDS 50.0%
CAGCTGCACGTTTAGTGAGA+AGG - chr1_1:80498566-80498585 Msa0047550:CDS 50.0%
! ACGTTTAGTGAGAAGGGCAC+TGG - chr1_1:80498573-80498592 Msa0047550:CDS 50.0%
!! CGTTTAGTGAGAAGGGCACT+GGG - chr1_1:80498574-80498593 Msa0047550:CDS 50.0%
TGTGCCAAACCCAGAGAGTT+TGG + chr1_1:80498788-80498807 None:intergenic 50.0%
AACTCTCTGGGTTTGGCACA+AGG - chr1_1:80498788-80498807 Msa0047550:CDS 50.0%
ACTCTCTGGGTTTGGCACAA+GGG - chr1_1:80498789-80498808 Msa0047550:CDS 50.0%
AAAGGAGAGATGCCTACAGG+TGG - chr1_1:80499171-80499190 Msa0047550:CDS 50.0%
AAGGAGAGATGCCTACAGGT+GGG - chr1_1:80499172-80499191 Msa0047550:CDS 50.0%
TGCCTACAGGTGGGAATGAA+TGG - chr1_1:80499181-80499200 Msa0047550:CDS 50.0%
! ACTTTTCACCTGCACGTAGC+AGG + chr1_1:80499261-80499280 None:intergenic 50.0%
AGGGCTCTCTCCAAAGAGTA+CGG - chr1_1:80499438-80499457 Msa0047550:five_prime_UTR 50.0%
AAAGACAGGGGTTGTGGGTG+GGG + chr1_1:80495663-80495682 None:intergenic 55.0%
CAAAGACAGGGGTTGTGGGT+GGG + chr1_1:80495664-80495683 None:intergenic 55.0%
ACAAAGACAGGGGTTGTGGG+TGG + chr1_1:80495665-80495684 None:intergenic 55.0%
GAAGGGAAAGGGAGAGAGGA+AGG + chr1_1:80495691-80495710 None:intergenic 55.0%
GGATGTTGACCCGCGAGATT+AGG - chr1_1:80496729-80496748 Msa0047550:intron 55.0%
! TGCGGTTTGGATGCCTGATG+AGG - chr1_1:80496826-80496845 Msa0047550:intron 55.0%
!!! GCAAGGGGGTGTCGATTTTG+AGG - chr1_1:80496954-80496973 Msa0047550:intron 55.0%
GCTGCGAGTAGTGGTGAATC+TGG - chr1_1:80496995-80497014 Msa0047550:intron 55.0%
AGTGGTGAATCTGGGGACTC+CGG - chr1_1:80497004-80497023 Msa0047550:intron 55.0%
ACGAATGGCTGCTACAGCAC+CGG + chr1_1:80497026-80497045 None:intergenic 55.0%
! GCTTTGGACCCACCATGAGA+TGG - chr1_1:80497147-80497166 Msa0047550:intron 55.0%
AGTGGAGGTAGTTGCTGACC+AGG - chr1_1:80497174-80497193 Msa0047550:intron 55.0%
AGTTGCTGACCAGGTTGCTG+TGG - chr1_1:80497183-80497202 Msa0047550:intron 55.0%
TTTGTGCCTGTTGCAACGCC+CGG + chr1_1:80497273-80497292 None:intergenic 55.0%
AAATGAGCTCCTTGCCTGGC+TGG + chr1_1:80497311-80497330 None:intergenic 55.0%
GCAAGAAGCTTCCCTCATCG+TGG + chr1_1:80497554-80497573 None:intergenic 55.0%
CTGAAGCTTAGGCCCTCCTT+AGG + chr1_1:80497916-80497935 None:intergenic 55.0%
TCAGCCTGTGCTTGGTCTAG+CGG - chr1_1:80498532-80498551 Msa0047550:CDS 55.0%
ACTACCGCTAGACCAAGCAC+AGG + chr1_1:80498539-80498558 None:intergenic 55.0%
AGAACAGTCCTGCTACGTGC+AGG - chr1_1:80499250-80499269 Msa0047550:five_prime_UTR 55.0%
AAAGACAGGGGTTGTGGGTG+GGG + chr1_1:80495663-80495682 None:intergenic 55.0%
CAAAGACAGGGGTTGTGGGT+GGG + chr1_1:80495664-80495683 None:intergenic 55.0%
ACAAAGACAGGGGTTGTGGG+TGG + chr1_1:80495665-80495684 None:intergenic 55.0%
GAAGGGAAAGGGAGAGAGGA+AGG + chr1_1:80495691-80495710 None:intergenic 55.0%
GGATGTTGACCCGCGAGATT+AGG - chr1_1:80496729-80496748 Msa0047550:intron 55.0%
! TGCGGTTTGGATGCCTGATG+AGG - chr1_1:80496826-80496845 Msa0047550:intron 55.0%
!!! GCAAGGGGGTGTCGATTTTG+AGG - chr1_1:80496954-80496973 Msa0047550:intron 55.0%
GCTGCGAGTAGTGGTGAATC+TGG - chr1_1:80496995-80497014 Msa0047550:intron 55.0%
AGTGGTGAATCTGGGGACTC+CGG - chr1_1:80497004-80497023 Msa0047550:intron 55.0%
ACGAATGGCTGCTACAGCAC+CGG + chr1_1:80497026-80497045 None:intergenic 55.0%
! GCTTTGGACCCACCATGAGA+TGG - chr1_1:80497147-80497166 Msa0047550:intron 55.0%
AGTGGAGGTAGTTGCTGACC+AGG - chr1_1:80497174-80497193 Msa0047550:intron 55.0%
AGTTGCTGACCAGGTTGCTG+TGG - chr1_1:80497183-80497202 Msa0047550:intron 55.0%
TTTGTGCCTGTTGCAACGCC+CGG + chr1_1:80497273-80497292 None:intergenic 55.0%
AAATGAGCTCCTTGCCTGGC+TGG + chr1_1:80497311-80497330 None:intergenic 55.0%
GCAAGAAGCTTCCCTCATCG+TGG + chr1_1:80497554-80497573 None:intergenic 55.0%
CTGAAGCTTAGGCCCTCCTT+AGG + chr1_1:80497916-80497935 None:intergenic 55.0%
TCAGCCTGTGCTTGGTCTAG+CGG - chr1_1:80498532-80498551 Msa0047550:CDS 55.0%
ACTACCGCTAGACCAAGCAC+AGG + chr1_1:80498539-80498558 None:intergenic 55.0%
AGAACAGTCCTGCTACGTGC+AGG - chr1_1:80499250-80499269 Msa0047550:five_prime_UTR 55.0%
GCAGCTCCGAGTGCAGAATC+AGG + chr1_1:80496980-80496999 None:intergenic 60.0%
GAGACAAGGCCACAGCAACC+TGG + chr1_1:80497195-80497214 None:intergenic 60.0%
! GCAAAACCGGGCGTTGCAAC+AGG - chr1_1:80497264-80497283 Msa0047550:intron 60.0%
GCATGCAATGATGGCCAGCC+AGG - chr1_1:80497294-80497313 Msa0047550:intron 60.0%
CAATGATGGCCAGCCAGGCA+AGG - chr1_1:80497299-80497318 Msa0047550:intron 60.0%
GCAGCTCCGAGTGCAGAATC+AGG + chr1_1:80496980-80496999 None:intergenic 60.0%
GAGACAAGGCCACAGCAACC+TGG + chr1_1:80497195-80497214 None:intergenic 60.0%
! GCAAAACCGGGCGTTGCAAC+AGG - chr1_1:80497264-80497283 Msa0047550:intron 60.0%
GCATGCAATGATGGCCAGCC+AGG - chr1_1:80497294-80497313 Msa0047550:intron 60.0%
CAATGATGGCCAGCCAGGCA+AGG - chr1_1:80497299-80497318 Msa0047550:intron 60.0%
GCACTCGGAGCTGCGAGTAG+TGG - chr1_1:80496986-80497005 Msa0047550:intron 65.0%
GCACTCGGAGCTGCGAGTAG+TGG - chr1_1:80496986-80497005 Msa0047550:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 80495646 80499755 80495646 ID=Msa0047550;Name=Msa0047550
chr1_1 mRNA 80495646 80499755 80495646 ID=Msa0047550-mRNA-1;Parent=Msa0047550;Name=Msa0047550-mRNA-1;_AED=0.01;_eAED=0.01;_QI=545|1|1|1|1|1|2|470|764
chr1_1 exon 80495646 80496643 80495646 ID=Msa0047550-mRNA-1:exon:27803;Parent=Msa0047550-mRNA-1
chr1_1 exon 80497444 80499755 80497444 ID=Msa0047550-mRNA-1:exon:27802;Parent=Msa0047550-mRNA-1
chr1_1 five_prime_UTR 80499211 80499755 80499211 ID=Msa0047550-mRNA-1:five_prime_utr;Parent=Msa0047550-mRNA-1
chr1_1 CDS 80497444 80499210 80497444 ID=Msa0047550-mRNA-1:cds;Parent=Msa0047550-mRNA-1
chr1_1 CDS 80496116 80496643 80496116 ID=Msa0047550-mRNA-1:cds;Parent=Msa0047550-mRNA-1
chr1_1 three_prime_UTR 80495646 80496115 80495646 ID=Msa0047550-mRNA-1:three_prime_utr;Parent=Msa0047550-mRNA-1
Gene Sequence

>Msa0047550

ATGGAAAAAGGGTTTTCTTCTTCTTCTTTGTTGTTATTGCTGTTGTTGATGATTAGTTCTCTTGTGATATCTGTTTATGGGATTGATGGTGAATATGTACATTGCAACTGTGATGATGATGATGATGGAATTTGGAGTGTACAAAGTATTTTGGTTTGTCAAAAAGTCAGTGACTTTTTCATTGCTATTGCATATTTTTCCATACCCCTTGAGCTACTTTACTTTGTTAGCTACTCCAATGTTCCATTTAAATTGGTATTCCTTCAATTTGTTGCTTTCATAGTTCTATGTGGTTTGACCCATTTACTCAATGCCTATACTTACTATGGCCCTCATTCCTTTCAATTGTTTCTATCTCTCACTGTTGCTAAATTCCTCACTGCCCTTGTTTCATGTGCCACTGCAATTACTTTCCCCACCTTGATTCCTCTTCTTTTGAAAATCAAGGTGAGGGAGTTTTTCTTGAAGCAGAATGTGTTGGAATTGGGGCAAGAGGTTGGGATTATGAAGAAACAGAAGGAGGCTAGTTGGCATGTTAGGATGTTGACCCGCGAGATTAGGAAGTCTTTGGATAAGCATACAATTTTGTATACCACACTTGTTGAGCTTTCCAAAGCCTTGGAGTTGCATAATTGTGCGGTTTGGATGCCTGATGAGGATAGAAGGGTGATGCATTTGACTCATGAGTTGAAGCCGAATCCGGCGAAGAGTTTTCATAGCTCTATTTCTGTAAATGATTTGGATGTGTTAGAGATAAGAAAGAGCAAGGGGGTGTCGATTTTGAGGCCTGATTCTGCACTCGGAGCTGCGAGTAGTGGTGAATCTGGGGACTCCGGTGCTGTAGCAGCCATTCGTATGCCGATACTTCATGTTTCAAATTTTAAAGGAGGGACACCGGAGTTTGTTGAGACATCTTATGCTATACTAGTTTTGGTTCTTCCGAAATCGAACTCAAGGCTTTGGACCCACCATGAGATGGAGATAGTGGAGGTAGTTGCTGACCAGGTTGCTGTGGCCTTGTCTCATGCATCTGTTCTTGAAGAGTCTCAGCTAATGAGACAGAAACTTAAAGAGCAAAACCGGGCGTTGCAACAGGCACAAAAGCATGCAATGATGGCCAGCCAGGCAAGGAGCTCATTTGAGAAAGTGATGAGCCATGGAATGAGGAGACCTTTGCATTCAATCCTGGGTTTGCTTTCAATGTTTCAAGAGGATAATATAAGATCTGAACAAAAGATTGTTGTTGACACAATATTGAAAGTTAGCAATTCGCTCTCGCGTTTGATAAATGATGTAATGGAAATTTCAGCCAACGACAAAGGAAGTTTCCAGTTAGAGTTGAAACATTTCCATCTACATTCCACGATGAGGGAAGCTTCTTGCATTGCCAAGTGTTTGTGTGTGTATAAAGGCTTTGGTCTTGAAATTGACGTGCAGAGATCCTTGCCTGATATGGTAATAGGTGATGAGGCAAGGTCTTTTCAATTAATTTTGCATATGATCGGCTATTTATTGAACTTATATGATAGAGGGACTCTCATTTTTCGAGTTTCTTTTGAAAGTGATACCGCAGATAAGGATGATAGAAGTTCTGGAATATTAAGATCAAGCATGCAAAATGATAATGTGTATATAAAGTTTAATTTCCAGATAACTGGTACTAGTTCCCATTCAGATGGACCAATTTTAAATAGTGCTAGTAGGATGCACCACAACAATGAACCTAAGGAGGGCCTAAGCTTCAGCATTTGCAAAACACTGGTGCAGATGATGGAAGGTAATATCTGGATATCACCAAACTCTCTGGGTTTGGCACAAGGGATGACACTTCTTCTCAAGTTTCAATCAGGATCATCGCATGGAAGATTCGTTCTTGCTAACAAAGATTTTTCAAACCAACAGTTTAGAGGTCTTAACGTTATTTTAGCCGATGATGATAATGTAAACAGGACTGTAACTAAGAAGCTGCTTGAGAAGCTGGGTTGTCAAGTAACCGCTGTTTCATCGGGTTTTGATTGTTTGGCTGCTATAACTGCCTCCAGTATACCATTCAAAATCATCCTTTTGGATCTTCAAATGCCTGAAATGGATGGTTTTGAAGTTGCAAGGAAGATTCGGAAGTTCCAAAGCCGAAATTGGCCTTTGATTATTGCTCTTACAGCAAGTGCAGAAGAACGCATAAAGGAGAGATGCCTACAGGTGGGAATGAATGGATTGATTCGAAAACCTATCCTCCTTCATGAGATAGCTAACGAACTTAGAACAGTCCTGCTACGTGCAGGTGAAAAGTTCTAA
Protein sequence

>Msa0047550

MEKGFSSSSLLLLLLLMISSLVISVYGIDGEYVHCNCDDDDDGIWSVQSILVCQKVSDFFIAIAYFSIPLELLYFVSYSNVPFKLVFLQFVAFIVLCGLTHLLNAYTYYGPHSFQLFLSLTVAKFLTALVSCATAITFPTLIPLLLKIKVREFFLKQNVLELGQEVGIMKKQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKALELHNCAVWMPDEDRRVMHLTHELKPNPAKSFHSSISVNDLDVLEIRKSKGVSILRPDSALGAASSGESGDSGAVAAIRMPILHVSNFKGGTPEFVETSYAILVLVLPKSNSRLWTHHEMEIVEVVADQVAVALSHASVLEESQLMRQKLKEQNRALQQAQKHAMMASQARSSFEKVMSHGMRRPLHSILGLLSMFQEDNIRSEQKIVVDTILKVSNSLSRLINDVMEISANDKGSFQLELKHFHLHSTMREASCIAKCLCVYKGFGLEIDVQRSLPDMVIGDEARSFQLILHMIGYLLNLYDRGTLIFRVSFESDTADKDDRSSGILRSSMQNDNVYIKFNFQITGTSSHSDGPILNSASRMHHNNEPKEGLSFSICKTLVQMMEGNIWISPNSLGLAQGMTLLLKFQSGSSHGRFVLANKDFSNQQFRGLNVILADDDNVNRTVTKKLLEKLGCQVTAVSSGFDCLAAITASSIPFKIILLDLQMPEMDGFEVARKIRKFQSRNWPLIIALTASAEERIKERCLQVGMNGLIRKPILLHEIANELRTVLLRAGEKF*