AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1341400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1341400 MtrunA17_Chr7g0274831 97.650 766 15 2 1 764 1 765 0.0 1531
Msa1341400 MtrunA17_Chr1g0190021 72.335 741 196 6 31 764 24 762 0.0 1077
Msa1341400 MtrunA17_Chr1g0186431 57.483 755 307 7 15 760 8 757 0.0 888
Msa1341400 MtrunA17_Chr1g0168161 53.056 769 337 10 1 757 1 757 0.0 805
Msa1341400 MtrunA17_Chr4g0013831 39.625 747 412 15 35 759 5 734 2.68e-166 498
Msa1341400 MtrunA17_Chr7g0269631 37.838 629 327 15 35 634 5 598 1.29e-110 350
Msa1341400 MtrunA17_Chr4g0077091 53.425 73 33 1 689 760 1 73 2.39e-20 85.9
Msa1341400 MtrunA17_Chr8g0377481 34.028 144 82 4 627 758 826 968 1.80e-17 87.4
Msa1341400 MtrunA17_Chr8g0377481 22.139 402 257 11 355 705 371 767 2.47e-14 77.4
Msa1341400 MtrunA17_Chr3g0122391 23.174 397 241 9 355 697 419 805 1.05e-16 85.1
Msa1341400 MtrunA17_Chr3g0122391 36.508 126 68 4 637 753 898 1020 1.93e-15 80.9
Msa1341400 MtrunA17_Chr5g0405701 25.225 333 208 8 365 666 498 820 8.23e-15 79.0
Msa1341400 MtrunA17_Chr8g0371601 25.000 348 211 11 365 677 460 792 7.52e-14 75.9
Msa1341400 MtrunA17_Chr8g0371601 35.878 131 64 4 633 744 1024 1153 1.93e-13 74.3
Msa1341400 MtrunA17_Chr5g0447641 20.718 362 235 7 355 669 596 952 3.67e-12 70.5
Msa1341400 MtrunA17_Chr5g0447641 34.127 126 58 4 640 743 1076 1198 4.78e-12 70.1
Msa1341400 MtrunA17_Chr8g0392301 33.871 124 62 3 637 743 860 980 1.67e-11 68.2
Msa1341400 MtrunA17_Chr8g0392301 20.588 374 238 3 355 669 362 735 1.74e-11 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1341400 AT3G04580.2 61.835 752 263 8 29 762 21 766 0.0 918
Msa1341400 AT3G04580.1 61.835 752 263 8 29 762 21 766 0.0 918
Msa1341400 AT3G23150.1 51.469 783 336 14 7 762 6 771 0.0 726
Msa1341400 AT3G23150.2 52.087 599 258 10 7 590 6 590 0.0 561
Msa1341400 AT1G04310.1 46.216 621 307 11 10 615 10 618 2.72e-172 510
Msa1341400 AT1G04310.2 46.216 621 307 11 10 615 10 618 2.72e-172 510
Msa1341400 AT1G66340.1 39.600 750 402 18 35 757 4 729 1.38e-164 493
Msa1341400 AT2G40940.1 38.648 577 338 10 54 621 21 590 2.04e-112 354
Msa1341400 AT1G27320.1 22.271 458 312 6 336 754 410 862 6.58e-20 95.9
Msa1341400 AT1G27320.1 29.927 137 75 3 637 753 889 1024 4.31e-13 73.6
Msa1341400 AT5G35750.1 22.438 361 227 8 356 669 567 921 4.45e-17 86.7
Msa1341400 AT5G35750.1 34.228 149 68 4 623 743 1013 1159 1.32e-13 75.5
Msa1341400 AT2G17820.1 25.074 339 219 8 366 677 488 818 7.55e-15 79.3
Msa1341400 AT2G01830.5 36.752 117 61 4 637 743 933 1046 3.18e-13 74.3
Msa1341400 AT2G01830.5 22.509 271 203 3 355 622 440 706 5.73e-13 73.2
Msa1341400 AT2G01830.1 36.752 117 61 4 637 743 921 1034 3.25e-13 73.9
Msa1341400 AT2G01830.1 22.509 271 203 3 355 622 428 694 5.96e-13 73.2
Msa1341400 AT2G01830.4 36.752 117 61 4 637 743 921 1034 3.25e-13 73.9
Msa1341400 AT2G01830.4 22.509 271 203 3 355 622 428 694 5.96e-13 73.2
Msa1341400 AT2G01830.6 36.752 117 61 4 637 743 921 1034 3.25e-13 73.9
Msa1341400 AT2G01830.6 22.509 271 203 3 355 622 428 694 5.96e-13 73.2
Msa1341400 AT2G01830.3 36.752 117 61 4 637 743 921 1034 3.25e-13 73.9
Msa1341400 AT2G01830.3 22.509 271 203 3 355 622 428 694 5.96e-13 73.2
Msa1341400 AT2G01830.2 36.752 117 61 4 637 743 944 1057 3.42e-13 73.9
Msa1341400 AT2G01830.2 22.509 271 203 3 355 622 451 717 6.89e-13 73.2
Msa1341400 AT5G10720.1 22.642 318 211 10 332 634 327 624 9.94e-11 65.9

Find 225 sgRNAs with CRISPR-Local

Find 604 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTATGTTGCAATGGAAAA+AGG 0.158153 tig0004828:+127843 Msa1341400:exon
TCTCTTGTGATATCTGTTTA+TGG 0.177952 tig0004828:+127912 Msa1341400:CDS
CTCCAATGTTCCATTTAAAT+TGG 0.194829 tig0004828:+128088 Msa1341400:CDS
ATACCTCGTCAACAACATTT+TGG 0.199082 tig0004828:-131404 None:intergenic
TGAAGGAATACCAATTTAAA+TGG 0.204373 tig0004828:-128098 None:intergenic
CTCTATTTCTGTAAATGATT+TGG 0.214081 tig0004828:+128574 Msa1341400:CDS
TTGGAGTGTACAAAGTATTT+TGG 0.234119 tig0004828:+127986 Msa1341400:CDS
AAGTATAGGCATTGAGTAAA+TGG 0.235188 tig0004828:-128154 None:intergenic
ACCATTCAAAATCATCCTTT+TGG 0.252407 tig0004828:+130700 Msa1341400:CDS
TTAAGTTTCTCAAATTTCTT+AGG 0.253349 tig0004828:+130958 Msa1341400:three_prime_UTR
CTCAATGCCTATACTTACTA+TGG 0.275621 tig0004828:+128161 Msa1341400:CDS
ACTTCAAAACCATCCATTTC+AGG 0.281316 tig0004828:-130734 None:intergenic
TGAATAGAAGAGGGAGTAAT+AGG 0.284971 tig0004828:-127374 None:intergenic
GGAAGTTCCAAAGCCGAAAT+TGG 0.286448 tig0004828:+130771 Msa1341400:CDS
CACCATCTATGTTGTTTGTT+AGG 0.292878 tig0004828:+127733 Msa1341400:five_prime_UTR
CTCTTGTGATATCTGTTTAT+GGG 0.295715 tig0004828:+127913 Msa1341400:CDS
CTACTAGCACTATTTAAAAT+TGG 0.299995 tig0004828:-129535 None:intergenic
ATCTTATGCTATACTAGTTT+TGG 0.300114 tig0004828:+128766 Msa1341400:CDS
CAAAGCCTTGAGTTCGATTT+CGG 0.313490 tig0004828:-128794 None:intergenic
CCGCGAGATTAGGAAGTCTT+TGG 0.313919 tig0004828:+128403 Msa1341400:CDS
TCAAAGGCCAATTTCGGCTT+TGG 0.315320 tig0004828:-130778 None:intergenic
GGAAATGTTTCAACTCTAAC+TGG 0.322814 tig0004828:-129183 None:intergenic
TGAAAACTCTTCGCCGGATT+CGG 0.327965 tig0004828:-128548 None:intergenic
CTTCTTCTCAAGTTTCAATC+AGG 0.328501 tig0004828:+130482 Msa1341400:CDS
GATAAGGATGATAGAAGTTC+TGG 0.333479 tig0004828:+129427 Msa1341400:CDS
AAGTTTAATTTCCAGATAAC+TGG 0.338812 tig0004828:+129490 Msa1341400:CDS
ATCTTCAATTTACCTAATCT+TGG 0.350046 tig0004828:+127661 Msa1341400:five_prime_UTR
GGGAACTAGTACCAGTTATC+TGG 0.355067 tig0004828:-129501 None:intergenic
CGAAATCGAACTCAAGGCTT+TGG 0.361339 tig0004828:+128795 Msa1341400:CDS
TGTGCCAAACCCAGAGAGTT+TGG 0.362144 tig0004828:-130449 None:intergenic
AGGAGGCTAGTTGGCATGTT+AGG 0.362594 tig0004828:+128372 Msa1341400:CDS
CAATAATCAAAGGCCAATTT+CGG 0.365522 tig0004828:-130784 None:intergenic
CTGGATATCACCAAACTCTC+TGG 0.365884 tig0004828:+130439 Msa1341400:CDS
GGATCTTCAAATGCCTGAAA+TGG 0.366381 tig0004828:+130721 Msa1341400:CDS
TCATCACCTATTACCATATC+AGG 0.368786 tig0004828:-129301 None:intergenic
GTAAGCATCTCCGTACTCTT+TGG 0.372407 tig0004828:-131112 None:intergenic
TGGAATTGGGGCAAGAGGTT+GGG 0.375142 tig0004828:+128333 Msa1341400:CDS
CCCTCATCATGGAATGTAGA+TGG 0.380010 tig0004828:-129204 None:intergenic
AAAGGGCAAGGGAGAGAGGA+AGG 0.382147 tig0004828:-127351 None:intergenic
AAAGACAGGGGTTGTGGGTG+GGG 0.382578 tig0004828:-127323 None:intergenic
TTGGAATTGGGGCAAGAGGT+TGG 0.382688 tig0004828:+128332 Msa1341400:CDS
TAAGAAGCTGCTTGAGAAGC+TGG 0.383208 tig0004828:+130613 Msa1341400:CDS
GCAGAGATCCTTGCCTGATA+TGG 0.386198 tig0004828:+129288 Msa1341400:CDS
GCTGCGAGTAGTGGTGAATC+TGG 0.386274 tig0004828:+128659 Msa1341400:CDS
GCAAAACCGGGCGTTGCAAC+AGG 0.388211 tig0004828:+128928 Msa1341400:CDS
GAAGCAGAATGTGTTGGAAT+TGG 0.390130 tig0004828:+128319 Msa1341400:CDS
AGAAACTTAAAGAGCAAAAC+CGG 0.390137 tig0004828:+128915 Msa1341400:CDS
CCTAATCTTGGTAGTTAAGT+TGG 0.397095 tig0004828:+127673 Msa1341400:five_prime_UTR
GAGACCTTTGCATTCAATCC+TGG 0.400066 tig0004828:+129021 Msa1341400:CDS
AAGCAGAATGTGTTGGAATT+GGG 0.402075 tig0004828:+128320 Msa1341400:CDS
AAGTGTTTGTGTGTGTATAA+AGG 0.402755 tig0004828:+129244 Msa1341400:CDS
TTAAAATTGGTCCATCTGAA+TGG 0.402769 tig0004828:-129522 None:intergenic
TCCTTGCCTGATATGGTAAT+AGG 0.403180 tig0004828:+129295 Msa1341400:CDS
ATTATGCAACTCCAAGGCTT+TGG 0.407308 tig0004828:-128465 None:intergenic
GGATGTTGACCCGCGAGATT+AGG 0.409855 tig0004828:+128393 Msa1341400:CDS
AACCTAACAAACAACATAGA+TGG 0.414497 tig0004828:-127735 None:intergenic
CCTCCTTAGGTTCATTGTTG+TGG 0.420175 tig0004828:-129564 None:intergenic
GCAGCTCCGAGTGCAGAATC+AGG 0.421232 tig0004828:-128641 None:intergenic
GAAGACAAAGACAGGGGTTG+TGG 0.421771 tig0004828:-127329 None:intergenic
GCATGCAATGATGGCCAGCC+GGG 0.421964 tig0004828:+128958 Msa1341400:CDS
CAAGTAACCGCTGTTTCATC+GGG 0.427661 tig0004828:+130641 Msa1341400:CDS
TGTTGAGCTTTCCAAAGCCT+TGG 0.429033 tig0004828:+128454 Msa1341400:CDS
TTATTGAACTTATATGATAG+AGG 0.430014 tig0004828:+129364 Msa1341400:CDS
AGCATGCAATGATGGCCAGC+CGG 0.432572 tig0004828:+128957 Msa1341400:CDS
AAGTGCAGAAGAACGCATAA+AGG 0.432930 tig0004828:+130817 Msa1341400:CDS
TGCCTACAGGTGGGAATGAA+TGG 0.434232 tig0004828:+130845 Msa1341400:CDS
CCAACTTAACTACCAAGATT+AGG 0.435481 tig0004828:-127673 None:intergenic
AGATGATGGAAGGTAATATC+TGG 0.435995 tig0004828:+130420 Msa1341400:intron
AAATGAGCTCCTTGCCCGGC+TGG 0.436215 tig0004828:-128972 None:intergenic
TTGTGTGTGTATAAAGGCTT+TGG 0.437175 tig0004828:+129250 Msa1341400:CDS
GGCACAAAAGCATGCAATGA+TGG 0.437900 tig0004828:+128949 Msa1341400:CDS
TCAAGTAACCGCTGTTTCAT+CGG 0.439160 tig0004828:+130640 Msa1341400:CDS
CAATACTGTTGAAGAGAACC+TGG 0.440422 tig0004828:+131001 Msa1341400:three_prime_UTR
ATATCTGTTTATGGGATTGA+TGG 0.441688 tig0004828:+127921 Msa1341400:CDS
ATCACCAAACTCTCTGGGTT+TGG 0.443024 tig0004828:+130445 Msa1341400:CDS
CTGAAGCTTAGGCCCTCCTT+AGG 0.443209 tig0004828:-129577 None:intergenic
TAAAATTGGTCCATCTGAAT+GGG 0.443946 tig0004828:-129521 None:intergenic
TTTGAACTTTGAATAGAAGA+GGG 0.445280 tig0004828:-127383 None:intergenic
AGAGGAAGGAAGACAAAGAC+AGG 0.450976 tig0004828:-127337 None:intergenic
AGTTGCATAATTGTGCGGTT+TGG 0.452705 tig0004828:+128477 Msa1341400:CDS
TAGGAAAGGGCAAGGGAGAG+AGG 0.455751 tig0004828:-127355 None:intergenic
TCATGAGTTGAAGCCGAATC+CGG 0.456399 tig0004828:+128535 Msa1341400:CDS
CCACCATGAGATGGAGATAG+TGG 0.458301 tig0004828:+128820 Msa1341400:CDS
AGACCTTTGCATTCAATCCT+GGG 0.459059 tig0004828:+129022 Msa1341400:CDS
TTGAAGTTGCAAGGAAGATT+CGG 0.459346 tig0004828:+130750 Msa1341400:CDS
CCGATGATGATAATGTAAAC+AGG 0.466113 tig0004828:+130582 Msa1341400:CDS
GGATGCCTGATGAGGATAGA+AGG 0.466923 tig0004828:+128498 Msa1341400:CDS
GTAAAGTAGCTCAAGGGGTA+TGG 0.472963 tig0004828:-128054 None:intergenic
CACTATCTCCATCTCATGGT+GGG 0.473097 tig0004828:-128819 None:intergenic
TTTCAAAAGAAGAGGAATCA+AGG 0.474095 tig0004828:-128273 None:intergenic
TTGAGGCCTGATTCTGCACT+CGG 0.474787 tig0004828:+128635 Msa1341400:CDS
CTGCGAGTAGTGGTGAATCT+GGG 0.475786 tig0004828:+128660 Msa1341400:CDS
CTGGAAACTTCCTTTGTCGT+TGG 0.475889 tig0004828:-129164 None:intergenic
GTTAGAGATAAGAAAGAGCA+AGG 0.479184 tig0004828:+128601 Msa1341400:CDS
AAGACAAAGACAGGGGTTGT+GGG 0.479732 tig0004828:-127328 None:intergenic
AAAATAATGAAACTAATTTG+TGG 0.483738 tig0004828:-127628 None:intergenic
TGAAAGTGATACCGCAGATA+AGG 0.485783 tig0004828:+129411 Msa1341400:CDS
CAGGCATTTGAAGATCCAAA+AGG 0.486141 tig0004828:-130715 None:intergenic
CAATGATGGCCAGCCGGGCA+AGG 0.487153 tig0004828:+128963 Msa1341400:CDS
TCTAACATACTGAATATACT+AGG 0.488620 tig0004828:+131028 Msa1341400:three_prime_UTR
AACTCTCTGGGTTTGGCACA+AGG 0.491639 tig0004828:+130452 Msa1341400:CDS
ATCACCCTTCTATCCTCATC+AGG 0.491816 tig0004828:-128503 None:intergenic
AAAATCATAACTTTGACCAC+TGG 0.492004 tig0004828:+127792 Msa1341400:five_prime_UTR
TTTGTGCCTGTTGCAACGCC+CGG 0.496643 tig0004828:-128934 None:intergenic
GAAGAGGGAGTAATAGGAAA+GGG 0.500907 tig0004828:-127368 None:intergenic
TTACTAATACAGTTCCCAAA+AGG 0.502484 tig0004828:-127767 None:intergenic
AAATTTGAAACATGAAGTAT+CGG 0.504455 tig0004828:-128713 None:intergenic
TTCTTCCGAAATCGAACTCA+AGG 0.505225 tig0004828:+128789 Msa1341400:CDS
GCGTTTGATAAATGATGTAA+TGG 0.505741 tig0004828:+129132 Msa1341400:CDS
TCTCAAATGAGCTCCTTGCC+CGG 0.508034 tig0004828:-128976 None:intergenic
CTATGAAAGCAACAAATTGA+AGG 0.510314 tig0004828:-128115 None:intergenic
CGTTAAGACCTCTAAACTGT+TGG 0.510727 tig0004828:-130550 None:intergenic
CGGTTCATAGAAAGATTTGT+GGG 0.512095 tig0004828:+127300 None:intergenic
AACGTGTGTACAAATTTCAA+TGG 0.512368 tig0004828:-127545 None:intergenic
GTTGCTTTCATAGTTCTATG+TGG 0.512396 tig0004828:+128125 Msa1341400:CDS
AGTATAGGCATTGAGTAAAT+GGG 0.513040 tig0004828:-128153 None:intergenic
ATGAGGGCCATAGTAAGTAT+AGG 0.515615 tig0004828:-128168 None:intergenic
TACCAATTTAAATGGAACAT+TGG 0.516471 tig0004828:-128090 None:intergenic
CCTGTTTACATTATCATCAT+CGG 0.516759 tig0004828:-130582 None:intergenic
GCAAGAAGCTTCCCTCATCA+TGG 0.517031 tig0004828:-129215 None:intergenic
GGGAGTAATAGGAAAGGGCA+AGG 0.518222 tig0004828:-127363 None:intergenic
CAAAGACAGGGGTTGTGGGT+GGG 0.523285 tig0004828:-127324 None:intergenic
AGAAACAATTGAAAGGAATG+AGG 0.527304 tig0004828:-128185 None:intergenic
TAACAAAGTAAAGTAGCTCA+AGG 0.529518 tig0004828:-128061 None:intergenic
TCCATCTACATTCCATGATG+AGG 0.531079 tig0004828:+129203 Msa1341400:CDS
GCTATCTCATGAAGGAGGAT+AGG 0.531373 tig0004828:-130881 None:intergenic
CATAAAGGAGAGATGCCTAC+AGG 0.532003 tig0004828:+130832 Msa1341400:CDS
ATTTCTTGTTTATGTTGCAA+TGG 0.532594 tig0004828:+127836 Msa1341400:exon
TATTGAACTTATATGATAGA+GGG 0.534997 tig0004828:+129365 Msa1341400:CDS
CATAAACAAGAAATAATCAA+TGG 0.536136 tig0004828:-127827 None:intergenic
CTTCAAATGCCTGAAATGGA+TGG 0.537656 tig0004828:+130725 Msa1341400:CDS
TTAGAATAAAGAGATCAATT+CGG 0.538264 tig0004828:-127437 None:intergenic
TTTCTTGAAGCAGAATGTGT+TGG 0.539138 tig0004828:+128313 Msa1341400:CDS
GGAGTAATAGGAAAGGGCAA+GGG 0.542034 tig0004828:-127362 None:intergenic
CATTTGCAAAACACTGGTGC+AGG 0.542360 tig0004828:+129600 Msa1341400:CDS
TTCAGTATGTTAGAAATCCC+AGG 0.545716 tig0004828:-131019 None:intergenic
CCATCTACATTCCATGATGA+GGG 0.547828 tig0004828:+129204 Msa1341400:CDS
AGAAGAGGGAGTAATAGGAA+AGG 0.549393 tig0004828:-127369 None:intergenic
AGAAACAGAAGGAGGCTAGT+TGG 0.551296 tig0004828:+128363 Msa1341400:CDS
GAGCTATGAAAACTCTTCGC+CGG 0.551463 tig0004828:-128554 None:intergenic
GTTTGAACTTTGAATAGAAG+AGG 0.551662 tig0004828:-127384 None:intergenic
CAGTACTCACTGTCTAATGT+AGG 0.552536 tig0004828:-131307 None:intergenic
AAAAGAAGAGGAATCAAGGT+GGG 0.554060 tig0004828:-128269 None:intergenic
AACAAAGTAAAGTAGCTCAA+GGG 0.554101 tig0004828:-128060 None:intergenic
TTGCAGTGGCACATGAAACA+AGG 0.555378 tig0004828:-128238 None:intergenic
TTAGAGATAAGAAAGAGCAA+GGG 0.559027 tig0004828:+128602 Msa1341400:CDS
ACAAAGACAGGGGTTGTGGG+TGG 0.562859 tig0004828:-127325 None:intergenic
GCAAAGGTCTCCTCATTCCA+TGG 0.564414 tig0004828:-129009 None:intergenic
AAGTGATGAGCCATGGAATG+AGG 0.565260 tig0004828:+128999 Msa1341400:CDS
CCACAACAATGAACCTAAGG+AGG 0.566649 tig0004828:+129564 Msa1341400:CDS
ACGAATGGCTGCTACAGCAC+CGG 0.566933 tig0004828:-128687 None:intergenic
CATCTTTCTTTGTTCGACAG+TGG 0.567859 tig0004828:-131134 None:intergenic
ATACTAAAACCATGAACTAA+CGG 0.568215 tig0004828:+131220 Msa1341400:three_prime_UTR
AGTTGCTGACCAGGTTGCTG+TGG 0.568847 tig0004828:+128847 Msa1341400:CDS
CCACTATCTCCATCTCATGG+TGG 0.569247 tig0004828:-128820 None:intergenic
TTTGCTTTCAATGTTTCAAG+AGG 0.570011 tig0004828:+129045 Msa1341400:CDS
AGTGGAGGTAGTTGCTGACC+AGG 0.570687 tig0004828:+128838 Msa1341400:CDS
TGGATATCACCAAACTCTCT+GGG 0.571039 tig0004828:+130440 Msa1341400:CDS
GAAACAATTGAAAGGAATGA+GGG 0.573404 tig0004828:-128184 None:intergenic
AAGAAGCTGCTTGAGAAGCT+GGG 0.574319 tig0004828:+130614 Msa1341400:CDS
AGAACAGTCCTGCTACGTGC+AGG 0.575168 tig0004828:+130914 Msa1341400:CDS
AGGGCTCTCTCCAAAGAGTA+CGG 0.575975 tig0004828:+131102 Msa1341400:three_prime_UTR
GCACCACAACAATGAACCTA+AGG 0.576436 tig0004828:+129561 Msa1341400:CDS
AGTGGTGAATCTGGGGACTC+CGG 0.577575 tig0004828:+128668 Msa1341400:CDS
ACCTATTACCATATCAGGCA+AGG 0.579803 tig0004828:-129296 None:intergenic
GAGAGATAGAAACAATTGAA+AGG 0.580396 tig0004828:-128192 None:intergenic
GCACTCGGAGCTGCGAGTAG+TGG 0.580746 tig0004828:+128650 Msa1341400:CDS
GAAATTTCAGCCAACGACAA+AGG 0.583389 tig0004828:+129154 Msa1341400:CDS
TTTGAGAAAGTGATGAGCCA+TGG 0.585455 tig0004828:+128992 Msa1341400:CDS
GCTTTGGACCCACCATGAGA+TGG 0.587831 tig0004828:+128811 Msa1341400:CDS
AGCAGAATGTGTTGGAATTG+GGG 0.589243 tig0004828:+128321 Msa1341400:CDS
TGTGTTGGAATTGGGGCAAG+AGG 0.591001 tig0004828:+128328 Msa1341400:CDS
TAGAGATAAGAAAGAGCAAG+GGG 0.591331 tig0004828:+128603 Msa1341400:CDS
CTTCAGCATTTGCAAAACAC+TGG 0.591426 tig0004828:+129594 Msa1341400:CDS
CAAAGACTTCCTAATCTCGC+GGG 0.591973 tig0004828:-128402 None:intergenic
TCGGTTCATAGAAAGATTTG+TGG 0.592280 tig0004828:+127299 None:intergenic
TTCCCAAAATGTTGTTGACG+AGG 0.592651 tig0004828:+131401 Msa1341400:three_prime_UTR
ACTCTCTGGGTTTGGCACAA+GGG 0.593543 tig0004828:+130453 Msa1341400:CDS
ATGAAGTATCGGCATACGAA+TGG 0.595708 tig0004828:-128702 None:intergenic
ACAAAGTAAAGTAGCTCAAG+GGG 0.596064 tig0004828:-128059 None:intergenic
TGGGATTATGAAGAAACAGA+AGG 0.598480 tig0004828:+128352 Msa1341400:CDS
TTTAATGTACAGATGATGGA+AGG 0.599238 tig0004828:+130410 Msa1341400:intron
CCAAAGACTTCCTAATCTCG+CGG 0.601574 tig0004828:-128403 None:intergenic
CTTGGAGTTGCATAATTGTG+CGG 0.602360 tig0004828:+128472 Msa1341400:CDS
TTTATACACACACAAACACT+TGG 0.603367 tig0004828:-129242 None:intergenic
GCTGTAAGAGCAATAATCAA+AGG 0.605453 tig0004828:-130794 None:intergenic
GGTACTAGTTCCCATTCAGA+TGG 0.605734 tig0004828:+129511 Msa1341400:CDS
AATACTGTTGAAGAGAACCT+GGG 0.607450 tig0004828:+131002 Msa1341400:three_prime_UTR
CAATTCGGTAGAAAAGAGAA+AGG 0.608522 tig0004828:-127422 None:intergenic
GAGACAAGGCCACAGCAACC+TGG 0.608666 tig0004828:-128856 None:intergenic
TGGTAATAGGTGATGAGGCA+AGG 0.611503 tig0004828:+129308 Msa1341400:CDS
GTTCGTTAGCTATCTCATGA+AGG 0.613143 tig0004828:-130889 None:intergenic
TGCAGTGGCACATGAAACAA+GGG 0.615264 tig0004828:-128237 None:intergenic
TGCGAGTAGTGGTGAATCTG+GGG 0.617209 tig0004828:+128661 Msa1341400:CDS
TAAGATGTCTCAACAAACTC+CGG 0.617656 tig0004828:-128749 None:intergenic
CCTCCACTATCTCCATCTCA+TGG 0.620492 tig0004828:-128823 None:intergenic
CGCACAATTATGCAACTCCA+AGG 0.622141 tig0004828:-128471 None:intergenic
AAAGGAGAGATGCCTACAGG+TGG 0.625741 tig0004828:+130835 Msa1341400:CDS
AAAGAAGAGGAATCAAGGTG+GGG 0.631154 tig0004828:-128268 None:intergenic
AATTAGTTTCTTCAAAGACA+CGG 0.632451 tig0004828:-127520 None:intergenic
TTTCAATCAGGATCATCGCA+TGG 0.633630 tig0004828:+130494 Msa1341400:CDS
TGCGGTTTGGATGCCTGATG+AGG 0.636065 tig0004828:+128490 Msa1341400:CDS
GAGGAAGGAAGACAAAGACA+GGG 0.636351 tig0004828:-127336 None:intergenic
AAGAACAGATGCATGAGACA+AGG 0.644755 tig0004828:-128870 None:intergenic
AAACCCAGGATTGAATGCAA+AGG 0.645170 tig0004828:-129025 None:intergenic
TTTGGAAAGCTCAACAAGTG+TGG 0.647875 tig0004828:-128447 None:intergenic
CGTTAGCTATCTCATGAAGG+AGG 0.649779 tig0004828:-130886 None:intergenic
GATGCCTGATGAGGATAGAA+GGG 0.652796 tig0004828:+128499 Msa1341400:CDS
GAAACATTGAAAGCAAACCC+AGG 0.654290 tig0004828:-129039 None:intergenic
TCTGCAAGTCTGAAACCTTG+AGG 0.656284 tig0004828:+131372 Msa1341400:three_prime_UTR
GAGAGCCCTAATTCATAATG+CGG 0.663818 tig0004828:-131088 None:intergenic
ATCAAAACCCGATGAAACAG+CGG 0.664158 tig0004828:-130648 None:intergenic
AAGGAGAGATGCCTACAGGT+GGG 0.666460 tig0004828:+130836 Msa1341400:CDS
TGATATGGTAATAGGTGATG+AGG 0.667642 tig0004828:+129303 Msa1341400:CDS
CACATGAAACAAGGGCAGTG+AGG 0.669285 tig0004828:-128229 None:intergenic
CACAACAATGAACCTAAGGA+GGG 0.669995 tig0004828:+129565 Msa1341400:CDS
AGAGATAAGAAAGAGCAAGG+GGG 0.671908 tig0004828:+128604 Msa1341400:CDS
CCATGAGATGGAGATAGTGG+AGG 0.673370 tig0004828:+128823 Msa1341400:CDS
ACTTCTATCATCCTTATCTG+CGG 0.674734 tig0004828:-129422 None:intergenic
GAAACTTAAAGAGCAAAACC+GGG 0.674790 tig0004828:+128916 Msa1341400:CDS
ATCCATTCATTCCCACCTGT+AGG 0.679015 tig0004828:-130847 None:intergenic
CAAAAGAAGAGGAATCAAGG+TGG 0.682155 tig0004828:-128270 None:intergenic
GGTGGGGAAAGTAATTGCAG+TGG 0.686035 tig0004828:-128252 None:intergenic
AGGAAGGAAGACAAAGACAG+GGG 0.697555 tig0004828:-127335 None:intergenic
GATTATGAAGAAACAGAAGG+AGG 0.703737 tig0004828:+128355 Msa1341400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATGAAACTAATTTG+TGG - tig0004828:127631-127650 None:intergenic 15.0%
!!! TTCTCTTTTTCAAATTTATA+TGG + tig0004828:129629-129648 Msa1341400:intron 15.0%
!! AAAATAATGAAACTAATTTG+TGG - tig0004828:127631-127650 None:intergenic 15.0%
!!! TTCTCTTTTTCAAATTTATA+TGG + tig0004828:129629-129648 Msa1341400:intron 15.0%
!! TTAGAATAAAGAGATCAATT+CGG - tig0004828:127440-127459 None:intergenic 20.0%
!! CATAAACAAGAAATAATCAA+TGG - tig0004828:127830-127849 None:intergenic 20.0%
!!! AAATTTGAAACATGAAGTAT+CGG - tig0004828:128716-128735 None:intergenic 20.0%
!!! CTTCATGTTTCAAATTTTAA+AGG + tig0004828:128719-128738 Msa1341400:CDS 20.0%
!!! ATGTTTCAAATTTTAAAGGA+GGG + tig0004828:128723-128742 Msa1341400:CDS 20.0%
!!! CAATTAATTTTGCATATGAT+CGG + tig0004828:129337-129356 Msa1341400:CDS 20.0%
!! TTATTGAACTTATATGATAG+AGG + tig0004828:129364-129383 Msa1341400:CDS 20.0%
!! TATTGAACTTATATGATAGA+GGG + tig0004828:129365-129384 Msa1341400:CDS 20.0%
!! ATCAACAAAAACTTAAACAA+AGG - tig0004828:129661-129680 None:intergenic 20.0%
!!! CTATCAATAAAATTAGTTTG+TGG + tig0004828:129888-129907 Msa1341400:intron 20.0%
!! AATATTCAAAAGGTAAAAAG+TGG - tig0004828:130324-130343 None:intergenic 20.0%
!! TCTGTACATTAAATATTGTA+TGG - tig0004828:130403-130422 None:intergenic 20.0%
!! AATATTTAATGTACAGATGA+TGG + tig0004828:130406-130425 Msa1341400:intron 20.0%
!! TTAAGTTTCTCAAATTTCTT+AGG + tig0004828:130958-130977 Msa1341400:three_prime_UTR 20.0%
!! AAAATGATCAAACAGAAAAA+TGG - tig0004828:131067-131086 None:intergenic 20.0%
!! TTAGAATAAAGAGATCAATT+CGG - tig0004828:127440-127459 None:intergenic 20.0%
!! CATAAACAAGAAATAATCAA+TGG - tig0004828:127830-127849 None:intergenic 20.0%
!!! AAATTTGAAACATGAAGTAT+CGG - tig0004828:128716-128735 None:intergenic 20.0%
!!! CTTCATGTTTCAAATTTTAA+AGG + tig0004828:128719-128738 Msa1341400:CDS 20.0%
!!! ATGTTTCAAATTTTAAAGGA+GGG + tig0004828:128723-128742 Msa1341400:CDS 20.0%
!!! CAATTAATTTTGCATATGAT+CGG + tig0004828:129337-129356 Msa1341400:CDS 20.0%
!! TTATTGAACTTATATGATAG+AGG + tig0004828:129364-129383 Msa1341400:CDS 20.0%
!! TATTGAACTTATATGATAGA+GGG + tig0004828:129365-129384 Msa1341400:CDS 20.0%
!! ATCAACAAAAACTTAAACAA+AGG - tig0004828:129661-129680 None:intergenic 20.0%
!!! CTATCAATAAAATTAGTTTG+TGG + tig0004828:129888-129907 Msa1341400:intron 20.0%
!! AATATTCAAAAGGTAAAAAG+TGG - tig0004828:130324-130343 None:intergenic 20.0%
!! TCTGTACATTAAATATTGTA+TGG - tig0004828:130403-130422 None:intergenic 20.0%
!! AATATTTAATGTACAGATGA+TGG + tig0004828:130406-130425 Msa1341400:intron 20.0%
!! TTAAGTTTCTCAAATTTCTT+AGG + tig0004828:130958-130977 Msa1341400:three_prime_UTR 20.0%
!! AAAATGATCAAACAGAAAAA+TGG - tig0004828:131067-131086 None:intergenic 20.0%
! TTTGAACTTTGAATAGAAGA+GGG - tig0004828:127386-127405 None:intergenic 25.0%
!! AATTAGTTTCTTCAAAGACA+CGG - tig0004828:127523-127542 None:intergenic 25.0%
! ATCTTCAATTTACCTAATCT+TGG + tig0004828:127661-127680 Msa1341400:five_prime_UTR 25.0%
!! ATTTCTTGTTTATGTTGCAA+TGG + tig0004828:127836-127855 Msa1341400:exon 25.0%
! TTTATGTTGCAATGGAAAAA+GGG + tig0004828:127844-127863 Msa1341400:exon 25.0%
! TACCAATTTAAATGGAACAT+TGG - tig0004828:128093-128112 None:intergenic 25.0%
! TGAAGGAATACCAATTTAAA+TGG - tig0004828:128101-128120 None:intergenic 25.0%
!!! CTCTATTTCTGTAAATGATT+TGG + tig0004828:128574-128593 Msa1341400:CDS 25.0%
!!! CATGTTTCAAATTTTAAAGG+AGG + tig0004828:128722-128741 Msa1341400:CDS 25.0%
!!! ATCTTATGCTATACTAGTTT+TGG + tig0004828:128766-128785 Msa1341400:CDS 25.0%
!! AAGTTTAATTTCCAGATAAC+TGG + tig0004828:129490-129509 Msa1341400:CDS 25.0%
!! CTACTAGCACTATTTAAAAT+TGG - tig0004828:129538-129557 None:intergenic 25.0%
!! CAATTTTAAATAGTGCTAGT+AGG + tig0004828:129536-129555 Msa1341400:CDS 25.0%
! TTCACTTATTCAGATAATTG+AGG - tig0004828:129822-129841 None:intergenic 25.0%
!!! TCAATAAAATTAGTTTGTGG+TGG + tig0004828:129891-129910 Msa1341400:intron 25.0%
! AACCAGTATTATTTATAGTG+TGG + tig0004828:130010-130029 Msa1341400:intron 25.0%
! AACCACACTATAAATAATAC+TGG - tig0004828:130015-130034 None:intergenic 25.0%
! TTATTTATAGTGTGGTTTCT+TGG + tig0004828:130018-130037 Msa1341400:intron 25.0%
! ATGAATAGATACTAAGAATG+AGG - tig0004828:130046-130065 None:intergenic 25.0%
! AGTATCTATTCATCACAAAT+CGG + tig0004828:130053-130072 Msa1341400:intron 25.0%
! CTAAATGAAGAATGAAATAG+CGG + tig0004828:130095-130114 Msa1341400:intron 25.0%
!! TATTGAAGTAACGAATTTTG+AGG - tig0004828:130986-131005 None:intergenic 25.0%
! TCTAACATACTGAATATACT+AGG + tig0004828:131028-131047 Msa1341400:three_prime_UTR 25.0%
!! ATTTTTCTTGCAGATATTTG+TGG + tig0004828:131183-131202 Msa1341400:three_prime_UTR 25.0%
! ATACTAAAACCATGAACTAA+CGG + tig0004828:131220-131239 Msa1341400:three_prime_UTR 25.0%
! TTTGAACTTTGAATAGAAGA+GGG - tig0004828:127386-127405 None:intergenic 25.0%
!! AATTAGTTTCTTCAAAGACA+CGG - tig0004828:127523-127542 None:intergenic 25.0%
! ATCTTCAATTTACCTAATCT+TGG + tig0004828:127661-127680 Msa1341400:five_prime_UTR 25.0%
!! ATTTCTTGTTTATGTTGCAA+TGG + tig0004828:127836-127855 Msa1341400:exon 25.0%
! TTTATGTTGCAATGGAAAAA+GGG + tig0004828:127844-127863 Msa1341400:exon 25.0%
! TACCAATTTAAATGGAACAT+TGG - tig0004828:128093-128112 None:intergenic 25.0%
! TGAAGGAATACCAATTTAAA+TGG - tig0004828:128101-128120 None:intergenic 25.0%
!!! CTCTATTTCTGTAAATGATT+TGG + tig0004828:128574-128593 Msa1341400:CDS 25.0%
!!! CATGTTTCAAATTTTAAAGG+AGG + tig0004828:128722-128741 Msa1341400:CDS 25.0%
!!! ATCTTATGCTATACTAGTTT+TGG + tig0004828:128766-128785 Msa1341400:CDS 25.0%
!! AAGTTTAATTTCCAGATAAC+TGG + tig0004828:129490-129509 Msa1341400:CDS 25.0%
!! CTACTAGCACTATTTAAAAT+TGG - tig0004828:129538-129557 None:intergenic 25.0%
!! CAATTTTAAATAGTGCTAGT+AGG + tig0004828:129536-129555 Msa1341400:CDS 25.0%
! TTCACTTATTCAGATAATTG+AGG - tig0004828:129822-129841 None:intergenic 25.0%
!!! TCAATAAAATTAGTTTGTGG+TGG + tig0004828:129891-129910 Msa1341400:intron 25.0%
! AACCAGTATTATTTATAGTG+TGG + tig0004828:130010-130029 Msa1341400:intron 25.0%
! AACCACACTATAAATAATAC+TGG - tig0004828:130015-130034 None:intergenic 25.0%
! TTATTTATAGTGTGGTTTCT+TGG + tig0004828:130018-130037 Msa1341400:intron 25.0%
! ATGAATAGATACTAAGAATG+AGG - tig0004828:130046-130065 None:intergenic 25.0%
! AGTATCTATTCATCACAAAT+CGG + tig0004828:130053-130072 Msa1341400:intron 25.0%
! CTAAATGAAGAATGAAATAG+CGG + tig0004828:130095-130114 Msa1341400:intron 25.0%
!! TATTGAAGTAACGAATTTTG+AGG - tig0004828:130986-131005 None:intergenic 25.0%
! TCTAACATACTGAATATACT+AGG + tig0004828:131028-131047 Msa1341400:three_prime_UTR 25.0%
!! ATTTTTCTTGCAGATATTTG+TGG + tig0004828:131183-131202 Msa1341400:three_prime_UTR 25.0%
! ATACTAAAACCATGAACTAA+CGG + tig0004828:131220-131239 Msa1341400:three_prime_UTR 25.0%
GTTTGAACTTTGAATAGAAG+AGG - tig0004828:127387-127406 None:intergenic 30.0%
AACGTGTGTACAAATTTCAA+TGG - tig0004828:127548-127567 None:intergenic 30.0%
!! GTTTTGATCTAAATGAGCTA+TGG + tig0004828:127698-127717 Msa1341400:five_prime_UTR 30.0%
AACCTAACAAACAACATAGA+TGG - tig0004828:127738-127757 None:intergenic 30.0%
!!! TAGGTTTAGCTTTTTCCTTT+TGG + tig0004828:127752-127771 Msa1341400:five_prime_UTR 30.0%
!!! AGGTTTAGCTTTTTCCTTTT+GGG + tig0004828:127753-127772 Msa1341400:five_prime_UTR 30.0%
TTACTAATACAGTTCCCAAA+AGG - tig0004828:127770-127789 None:intergenic 30.0%
AAAATCATAACTTTGACCAC+TGG + tig0004828:127792-127811 Msa1341400:five_prime_UTR 30.0%
! ATGGTAATTTTCAAAACCAG+TGG - tig0004828:127811-127830 None:intergenic 30.0%
GTTTATGTTGCAATGGAAAA+AGG + tig0004828:127843-127862 Msa1341400:exon 30.0%
TCTCTTGTGATATCTGTTTA+TGG + tig0004828:127912-127931 Msa1341400:CDS 30.0%
CTCTTGTGATATCTGTTTAT+GGG + tig0004828:127913-127932 Msa1341400:CDS 30.0%
ATATCTGTTTATGGGATTGA+TGG + tig0004828:127921-127940 Msa1341400:CDS 30.0%
!! ATGATGATGATGATGGAATT+TGG + tig0004828:127967-127986 Msa1341400:CDS 30.0%
!! TTGGAGTGTACAAAGTATTT+TGG + tig0004828:127986-128005 Msa1341400:CDS 30.0%
AACAAAGTAAAGTAGCTCAA+GGG - tig0004828:128063-128082 None:intergenic 30.0%
TAACAAAGTAAAGTAGCTCA+AGG - tig0004828:128064-128083 None:intergenic 30.0%
CTCCAATGTTCCATTTAAAT+TGG + tig0004828:128088-128107 Msa1341400:CDS 30.0%
CTATGAAAGCAACAAATTGA+AGG - tig0004828:128118-128137 None:intergenic 30.0%
!! AGTATAGGCATTGAGTAAAT+GGG - tig0004828:128156-128175 None:intergenic 30.0%
!! AAGTATAGGCATTGAGTAAA+TGG - tig0004828:128157-128176 None:intergenic 30.0%
GAAACAATTGAAAGGAATGA+GGG - tig0004828:128187-128206 None:intergenic 30.0%
AGAAACAATTGAAAGGAATG+AGG - tig0004828:128188-128207 None:intergenic 30.0%
GAGAGATAGAAACAATTGAA+AGG - tig0004828:128195-128214 None:intergenic 30.0%
TTTCAAAAGAAGAGGAATCA+AGG - tig0004828:128276-128295 None:intergenic 30.0%
!! TCCTCTTCTTTTGAAAATCA+AGG + tig0004828:128280-128299 Msa1341400:CDS 30.0%
! ACCTTGATTTTCAAAAGAAG+AGG - tig0004828:128284-128303 None:intergenic 30.0%
!! TTCTTTTGAAAATCAAGGTG+AGG + tig0004828:128285-128304 Msa1341400:CDS 30.0%
!! TCTTTTGAAAATCAAGGTGA+GGG + tig0004828:128286-128305 Msa1341400:CDS 30.0%
TTAGAGATAAGAAAGAGCAA+GGG + tig0004828:128602-128621 Msa1341400:CDS 30.0%
AGAAACTTAAAGAGCAAAAC+CGG + tig0004828:128915-128934 Msa1341400:CDS 30.0%
TTTGCTTTCAATGTTTCAAG+AGG + tig0004828:129045-129064 Msa1341400:CDS 30.0%
GCGTTTGATAAATGATGTAA+TGG + tig0004828:129132-129151 Msa1341400:CDS 30.0%
TTTATACACACACAAACACT+TGG - tig0004828:129245-129264 None:intergenic 30.0%
AAGTGTTTGTGTGTGTATAA+AGG + tig0004828:129244-129263 Msa1341400:CDS 30.0%
TAAAATTGGTCCATCTGAAT+GGG - tig0004828:129524-129543 None:intergenic 30.0%
TTAAAATTGGTCCATCTGAA+TGG - tig0004828:129525-129544 None:intergenic 30.0%
! TCTTGGTTTGACAAAATTTC+CGG + tig0004828:129793-129812 Msa1341400:intron 30.0%
! AATCGTTGTGTCAGATTTTT+AGG + tig0004828:129917-129936 Msa1341400:intron 30.0%
! AGGGGGCTTTTTAAATTTAT+TGG - tig0004828:129947-129966 None:intergenic 30.0%
AGTTGCATCTACACTAAATA+GGG - tig0004828:129966-129985 None:intergenic 30.0%
TAGTTGCATCTACACTAAAT+AGG - tig0004828:129967-129986 None:intergenic 30.0%
! CGCTATTTCATTCTTCATTT+AGG - tig0004828:130097-130116 None:intergenic 30.0%
AGGTAAAAAGTGGAAAAAAG+TGG - tig0004828:130314-130333 None:intergenic 30.0%
TAGGACACAGAATATTCAAA+AGG - tig0004828:130334-130353 None:intergenic 30.0%
GTGAATCAAGCATATGTTAT+AGG - tig0004828:130353-130372 None:intergenic 30.0%
!! TTTAATGTACAGATGATGGA+AGG + tig0004828:130410-130429 Msa1341400:intron 30.0%
! TTTTCAAACCAACAGTTTAG+AGG + tig0004828:130542-130561 Msa1341400:CDS 30.0%
CCTGTTTACATTATCATCAT+CGG - tig0004828:130585-130604 None:intergenic 30.0%
! GATGATTTTGAATGGTATAC+TGG - tig0004828:130696-130715 None:intergenic 30.0%
! ACCATTCAAAATCATCCTTT+TGG + tig0004828:130700-130719 Msa1341400:CDS 30.0%
! TCCAAAAGGATGATTTTGAA+TGG - tig0004828:130704-130723 None:intergenic 30.0%
CAATAATCAAAGGCCAATTT+CGG - tig0004828:130787-130806 None:intergenic 30.0%
! ATTTTGCCGCATTATGAATT+AGG + tig0004828:131082-131101 Msa1341400:three_prime_UTR 30.0%
! TTTTGCCGCATTATGAATTA+GGG + tig0004828:131083-131102 Msa1341400:three_prime_UTR 30.0%
AGAAAAAATCCGTTAGTTCA+TGG - tig0004828:131232-131251 None:intergenic 30.0%
GTTTGAACTTTGAATAGAAG+AGG - tig0004828:127387-127406 None:intergenic 30.0%
AACGTGTGTACAAATTTCAA+TGG - tig0004828:127548-127567 None:intergenic 30.0%
!! GTTTTGATCTAAATGAGCTA+TGG + tig0004828:127698-127717 Msa1341400:five_prime_UTR 30.0%
AACCTAACAAACAACATAGA+TGG - tig0004828:127738-127757 None:intergenic 30.0%
!!! TAGGTTTAGCTTTTTCCTTT+TGG + tig0004828:127752-127771 Msa1341400:five_prime_UTR 30.0%
!!! AGGTTTAGCTTTTTCCTTTT+GGG + tig0004828:127753-127772 Msa1341400:five_prime_UTR 30.0%
TTACTAATACAGTTCCCAAA+AGG - tig0004828:127770-127789 None:intergenic 30.0%
AAAATCATAACTTTGACCAC+TGG + tig0004828:127792-127811 Msa1341400:five_prime_UTR 30.0%
! ATGGTAATTTTCAAAACCAG+TGG - tig0004828:127811-127830 None:intergenic 30.0%
GTTTATGTTGCAATGGAAAA+AGG + tig0004828:127843-127862 Msa1341400:exon 30.0%
TCTCTTGTGATATCTGTTTA+TGG + tig0004828:127912-127931 Msa1341400:CDS 30.0%
CTCTTGTGATATCTGTTTAT+GGG + tig0004828:127913-127932 Msa1341400:CDS 30.0%
ATATCTGTTTATGGGATTGA+TGG + tig0004828:127921-127940 Msa1341400:CDS 30.0%
!! ATGATGATGATGATGGAATT+TGG + tig0004828:127967-127986 Msa1341400:CDS 30.0%
!! TTGGAGTGTACAAAGTATTT+TGG + tig0004828:127986-128005 Msa1341400:CDS 30.0%
AACAAAGTAAAGTAGCTCAA+GGG - tig0004828:128063-128082 None:intergenic 30.0%
TAACAAAGTAAAGTAGCTCA+AGG - tig0004828:128064-128083 None:intergenic 30.0%
CTCCAATGTTCCATTTAAAT+TGG + tig0004828:128088-128107 Msa1341400:CDS 30.0%
CTATGAAAGCAACAAATTGA+AGG - tig0004828:128118-128137 None:intergenic 30.0%
!! AGTATAGGCATTGAGTAAAT+GGG - tig0004828:128156-128175 None:intergenic 30.0%
!! AAGTATAGGCATTGAGTAAA+TGG - tig0004828:128157-128176 None:intergenic 30.0%
GAAACAATTGAAAGGAATGA+GGG - tig0004828:128187-128206 None:intergenic 30.0%
AGAAACAATTGAAAGGAATG+AGG - tig0004828:128188-128207 None:intergenic 30.0%
GAGAGATAGAAACAATTGAA+AGG - tig0004828:128195-128214 None:intergenic 30.0%
TTTCAAAAGAAGAGGAATCA+AGG - tig0004828:128276-128295 None:intergenic 30.0%
!! TCCTCTTCTTTTGAAAATCA+AGG + tig0004828:128280-128299 Msa1341400:CDS 30.0%
! ACCTTGATTTTCAAAAGAAG+AGG - tig0004828:128284-128303 None:intergenic 30.0%
!! TTCTTTTGAAAATCAAGGTG+AGG + tig0004828:128285-128304 Msa1341400:CDS 30.0%
!! TCTTTTGAAAATCAAGGTGA+GGG + tig0004828:128286-128305 Msa1341400:CDS 30.0%
TTAGAGATAAGAAAGAGCAA+GGG + tig0004828:128602-128621 Msa1341400:CDS 30.0%
AGAAACTTAAAGAGCAAAAC+CGG + tig0004828:128915-128934 Msa1341400:CDS 30.0%
TTTGCTTTCAATGTTTCAAG+AGG + tig0004828:129045-129064 Msa1341400:CDS 30.0%
GCGTTTGATAAATGATGTAA+TGG + tig0004828:129132-129151 Msa1341400:CDS 30.0%
TTTATACACACACAAACACT+TGG - tig0004828:129245-129264 None:intergenic 30.0%
AAGTGTTTGTGTGTGTATAA+AGG + tig0004828:129244-129263 Msa1341400:CDS 30.0%
TAAAATTGGTCCATCTGAAT+GGG - tig0004828:129524-129543 None:intergenic 30.0%
TTAAAATTGGTCCATCTGAA+TGG - tig0004828:129525-129544 None:intergenic 30.0%
! TCTTGGTTTGACAAAATTTC+CGG + tig0004828:129793-129812 Msa1341400:intron 30.0%
! AATCGTTGTGTCAGATTTTT+AGG + tig0004828:129917-129936 Msa1341400:intron 30.0%
! AGGGGGCTTTTTAAATTTAT+TGG - tig0004828:129947-129966 None:intergenic 30.0%
AGTTGCATCTACACTAAATA+GGG - tig0004828:129966-129985 None:intergenic 30.0%
TAGTTGCATCTACACTAAAT+AGG - tig0004828:129967-129986 None:intergenic 30.0%
! CGCTATTTCATTCTTCATTT+AGG - tig0004828:130097-130116 None:intergenic 30.0%
AGGTAAAAAGTGGAAAAAAG+TGG - tig0004828:130314-130333 None:intergenic 30.0%
TAGGACACAGAATATTCAAA+AGG - tig0004828:130334-130353 None:intergenic 30.0%
GTGAATCAAGCATATGTTAT+AGG - tig0004828:130353-130372 None:intergenic 30.0%
!! TTTAATGTACAGATGATGGA+AGG + tig0004828:130410-130429 Msa1341400:intron 30.0%
! TTTTCAAACCAACAGTTTAG+AGG + tig0004828:130542-130561 Msa1341400:CDS 30.0%
CCTGTTTACATTATCATCAT+CGG - tig0004828:130585-130604 None:intergenic 30.0%
! GATGATTTTGAATGGTATAC+TGG - tig0004828:130696-130715 None:intergenic 30.0%
! ACCATTCAAAATCATCCTTT+TGG + tig0004828:130700-130719 Msa1341400:CDS 30.0%
! TCCAAAAGGATGATTTTGAA+TGG - tig0004828:130704-130723 None:intergenic 30.0%
CAATAATCAAAGGCCAATTT+CGG - tig0004828:130787-130806 None:intergenic 30.0%
! ATTTTGCCGCATTATGAATT+AGG + tig0004828:131082-131101 Msa1341400:three_prime_UTR 30.0%
! TTTTGCCGCATTATGAATTA+GGG + tig0004828:131083-131102 Msa1341400:three_prime_UTR 30.0%
AGAAAAAATCCGTTAGTTCA+TGG - tig0004828:131232-131251 None:intergenic 30.0%
TGAATAGAAGAGGGAGTAAT+AGG - tig0004828:127377-127396 None:intergenic 35.0%
CAATTCGGTAGAAAAGAGAA+AGG - tig0004828:127425-127444 None:intergenic 35.0%
CCAACTTAACTACCAAGATT+AGG - tig0004828:127676-127695 None:intergenic 35.0%
! CCTAATCTTGGTAGTTAAGT+TGG + tig0004828:127673-127692 Msa1341400:five_prime_UTR 35.0%
! CACCATCTATGTTGTTTGTT+AGG + tig0004828:127733-127752 Msa1341400:five_prime_UTR 35.0%
! AACTGTGATGATGATGATGA+TGG + tig0004828:127960-127979 Msa1341400:CDS 35.0%
ACAAAGTAAAGTAGCTCAAG+GGG - tig0004828:128062-128081 None:intergenic 35.0%
! GTTGCTTTCATAGTTCTATG+TGG + tig0004828:128125-128144 Msa1341400:CDS 35.0%
CTCAATGCCTATACTTACTA+TGG + tig0004828:128161-128180 Msa1341400:CDS 35.0%
AAAAGAAGAGGAATCAAGGT+GGG - tig0004828:128272-128291 None:intergenic 35.0%
TTTCTTGAAGCAGAATGTGT+TGG + tig0004828:128313-128332 Msa1341400:CDS 35.0%
AAGCAGAATGTGTTGGAATT+GGG + tig0004828:128320-128339 Msa1341400:CDS 35.0%
TGGGATTATGAAGAAACAGA+AGG + tig0004828:128352-128371 Msa1341400:CDS 35.0%
GATTATGAAGAAACAGAAGG+AGG + tig0004828:128355-128374 Msa1341400:CDS 35.0%
GTTAGAGATAAGAAAGAGCA+AGG + tig0004828:128601-128620 Msa1341400:CDS 35.0%
TAGAGATAAGAAAGAGCAAG+GGG + tig0004828:128603-128622 Msa1341400:CDS 35.0%
!! AAATTTTAAAGGAGGGACAC+CGG + tig0004828:128730-128749 Msa1341400:CDS 35.0%
TAAGATGTCTCAACAAACTC+CGG - tig0004828:128752-128771 None:intergenic 35.0%
GAAACTTAAAGAGCAAAACC+GGG + tig0004828:128916-128935 Msa1341400:CDS 35.0%
GGAAATGTTTCAACTCTAAC+TGG - tig0004828:129186-129205 None:intergenic 35.0%
TTGTGTGTGTATAAAGGCTT+TGG + tig0004828:129250-129269 Msa1341400:CDS 35.0%
TCATCACCTATTACCATATC+AGG - tig0004828:129304-129323 None:intergenic 35.0%
TGATATGGTAATAGGTGATG+AGG + tig0004828:129303-129322 Msa1341400:CDS 35.0%
ACTTCTATCATCCTTATCTG+CGG - tig0004828:129425-129444 None:intergenic 35.0%
GATAAGGATGATAGAAGTTC+TGG + tig0004828:129427-129446 Msa1341400:CDS 35.0%
! TTTTGCAAATGCTGAAGCTT+AGG - tig0004828:129591-129610 None:intergenic 35.0%
ATTCAGATAATTGAGGCTAC+CGG - tig0004828:129815-129834 None:intergenic 35.0%
TGCGTATCTGTTTATGATGT+TGG + tig0004828:129850-129869 Msa1341400:intron 35.0%
TTGCATCTACACTAAATAGG+GGG - tig0004828:129964-129983 None:intergenic 35.0%
GTTGCATCTACACTAAATAG+GGG - tig0004828:129965-129984 None:intergenic 35.0%
! ATGAAGAATGAAATAGCGGA+AGG + tig0004828:130099-130118 Msa1341400:intron 35.0%
! TGAAGAATGAAATAGCGGAA+GGG + tig0004828:130100-130119 Msa1341400:intron 35.0%
GGAGTAGTAACTTAATACAG+AGG - tig0004828:130293-130312 None:intergenic 35.0%
GCTACAAAACAATCACACAA+TGG - tig0004828:130375-130394 None:intergenic 35.0%
!! AGATGATGGAAGGTAATATC+TGG + tig0004828:130420-130439 Msa1341400:intron 35.0%
CTTCTTCTCAAGTTTCAATC+AGG + tig0004828:130482-130501 Msa1341400:CDS 35.0%
! CCGATGATGATAATGTAAAC+AGG + tig0004828:130582-130601 Msa1341400:CDS 35.0%
!!! TTCATCGGGTTTTGATTGTT+TGG + tig0004828:130655-130674 Msa1341400:CDS 35.0%
! GATTTTGAATGGTATACTGG+AGG - tig0004828:130693-130712 None:intergenic 35.0%
ACTTCAAAACCATCCATTTC+AGG - tig0004828:130737-130756 None:intergenic 35.0%
TTGAAGTTGCAAGGAAGATT+CGG + tig0004828:130750-130769 Msa1341400:CDS 35.0%
GCTGTAAGAGCAATAATCAA+AGG - tig0004828:130797-130816 None:intergenic 35.0%
AATACTGTTGAAGAGAACCT+GGG + tig0004828:131002-131021 Msa1341400:three_prime_UTR 35.0%
TTCAGTATGTTAGAAATCCC+AGG - tig0004828:131022-131041 None:intergenic 35.0%
TGAATAGAAGAGGGAGTAAT+AGG - tig0004828:127377-127396 None:intergenic 35.0%
CAATTCGGTAGAAAAGAGAA+AGG - tig0004828:127425-127444 None:intergenic 35.0%
CCAACTTAACTACCAAGATT+AGG - tig0004828:127676-127695 None:intergenic 35.0%
! CCTAATCTTGGTAGTTAAGT+TGG + tig0004828:127673-127692 Msa1341400:five_prime_UTR 35.0%
! CACCATCTATGTTGTTTGTT+AGG + tig0004828:127733-127752 Msa1341400:five_prime_UTR 35.0%
! AACTGTGATGATGATGATGA+TGG + tig0004828:127960-127979 Msa1341400:CDS 35.0%
ACAAAGTAAAGTAGCTCAAG+GGG - tig0004828:128062-128081 None:intergenic 35.0%
! GTTGCTTTCATAGTTCTATG+TGG + tig0004828:128125-128144 Msa1341400:CDS 35.0%
CTCAATGCCTATACTTACTA+TGG + tig0004828:128161-128180 Msa1341400:CDS 35.0%
AAAAGAAGAGGAATCAAGGT+GGG - tig0004828:128272-128291 None:intergenic 35.0%
TTTCTTGAAGCAGAATGTGT+TGG + tig0004828:128313-128332 Msa1341400:CDS 35.0%
AAGCAGAATGTGTTGGAATT+GGG + tig0004828:128320-128339 Msa1341400:CDS 35.0%
TGGGATTATGAAGAAACAGA+AGG + tig0004828:128352-128371 Msa1341400:CDS 35.0%
GATTATGAAGAAACAGAAGG+AGG + tig0004828:128355-128374 Msa1341400:CDS 35.0%
GTTAGAGATAAGAAAGAGCA+AGG + tig0004828:128601-128620 Msa1341400:CDS 35.0%
TAGAGATAAGAAAGAGCAAG+GGG + tig0004828:128603-128622 Msa1341400:CDS 35.0%
!! AAATTTTAAAGGAGGGACAC+CGG + tig0004828:128730-128749 Msa1341400:CDS 35.0%
TAAGATGTCTCAACAAACTC+CGG - tig0004828:128752-128771 None:intergenic 35.0%
GAAACTTAAAGAGCAAAACC+GGG + tig0004828:128916-128935 Msa1341400:CDS 35.0%
GGAAATGTTTCAACTCTAAC+TGG - tig0004828:129186-129205 None:intergenic 35.0%
TTGTGTGTGTATAAAGGCTT+TGG + tig0004828:129250-129269 Msa1341400:CDS 35.0%
TCATCACCTATTACCATATC+AGG - tig0004828:129304-129323 None:intergenic 35.0%
TGATATGGTAATAGGTGATG+AGG + tig0004828:129303-129322 Msa1341400:CDS 35.0%
ACTTCTATCATCCTTATCTG+CGG - tig0004828:129425-129444 None:intergenic 35.0%
GATAAGGATGATAGAAGTTC+TGG + tig0004828:129427-129446 Msa1341400:CDS 35.0%
! TTTTGCAAATGCTGAAGCTT+AGG - tig0004828:129591-129610 None:intergenic 35.0%
ATTCAGATAATTGAGGCTAC+CGG - tig0004828:129815-129834 None:intergenic 35.0%
TGCGTATCTGTTTATGATGT+TGG + tig0004828:129850-129869 Msa1341400:intron 35.0%
TTGCATCTACACTAAATAGG+GGG - tig0004828:129964-129983 None:intergenic 35.0%
GTTGCATCTACACTAAATAG+GGG - tig0004828:129965-129984 None:intergenic 35.0%
! ATGAAGAATGAAATAGCGGA+AGG + tig0004828:130099-130118 Msa1341400:intron 35.0%
! TGAAGAATGAAATAGCGGAA+GGG + tig0004828:130100-130119 Msa1341400:intron 35.0%
GGAGTAGTAACTTAATACAG+AGG - tig0004828:130293-130312 None:intergenic 35.0%
GCTACAAAACAATCACACAA+TGG - tig0004828:130375-130394 None:intergenic 35.0%
!! AGATGATGGAAGGTAATATC+TGG + tig0004828:130420-130439 Msa1341400:intron 35.0%
CTTCTTCTCAAGTTTCAATC+AGG + tig0004828:130482-130501 Msa1341400:CDS 35.0%
! CCGATGATGATAATGTAAAC+AGG + tig0004828:130582-130601 Msa1341400:CDS 35.0%
!!! TTCATCGGGTTTTGATTGTT+TGG + tig0004828:130655-130674 Msa1341400:CDS 35.0%
! GATTTTGAATGGTATACTGG+AGG - tig0004828:130693-130712 None:intergenic 35.0%
ACTTCAAAACCATCCATTTC+AGG - tig0004828:130737-130756 None:intergenic 35.0%
TTGAAGTTGCAAGGAAGATT+CGG + tig0004828:130750-130769 Msa1341400:CDS 35.0%
GCTGTAAGAGCAATAATCAA+AGG - tig0004828:130797-130816 None:intergenic 35.0%
AATACTGTTGAAGAGAACCT+GGG + tig0004828:131002-131021 Msa1341400:three_prime_UTR 35.0%
TTCAGTATGTTAGAAATCCC+AGG - tig0004828:131022-131041 None:intergenic 35.0%
GAAGAGGGAGTAATAGGAAA+GGG - tig0004828:127371-127390 None:intergenic 40.0%
AGAAGAGGGAGTAATAGGAA+AGG - tig0004828:127372-127391 None:intergenic 40.0%
ATGAGGGCCATAGTAAGTAT+AGG - tig0004828:128171-128190 None:intergenic 40.0%
AAAGAAGAGGAATCAAGGTG+GGG - tig0004828:128271-128290 None:intergenic 40.0%
CAAAAGAAGAGGAATCAAGG+TGG - tig0004828:128273-128292 None:intergenic 40.0%
GAAGCAGAATGTGTTGGAAT+TGG + tig0004828:128319-128338 Msa1341400:CDS 40.0%
AGCAGAATGTGTTGGAATTG+GGG + tig0004828:128321-128340 Msa1341400:CDS 40.0%
TTTGGAAAGCTCAACAAGTG+TGG - tig0004828:128450-128469 None:intergenic 40.0%
ATTATGCAACTCCAAGGCTT+TGG - tig0004828:128468-128487 None:intergenic 40.0%
CTTGGAGTTGCATAATTGTG+CGG + tig0004828:128472-128491 Msa1341400:CDS 40.0%
AGTTGCATAATTGTGCGGTT+TGG + tig0004828:128477-128496 Msa1341400:CDS 40.0%
AGAGATAAGAAAGAGCAAGG+GGG + tig0004828:128604-128623 Msa1341400:CDS 40.0%
!! ATGAAGTATCGGCATACGAA+TGG - tig0004828:128705-128724 None:intergenic 40.0%
TTCTTCCGAAATCGAACTCA+AGG + tig0004828:128789-128808 Msa1341400:CDS 40.0%
CAAAGCCTTGAGTTCGATTT+CGG - tig0004828:128797-128816 None:intergenic 40.0%
AAGAACAGATGCATGAGACA+AGG - tig0004828:128873-128892 None:intergenic 40.0%
TTTGAGAAAGTGATGAGCCA+TGG + tig0004828:128992-129011 Msa1341400:CDS 40.0%
AGACCTTTGCATTCAATCCT+GGG + tig0004828:129022-129041 Msa1341400:CDS 40.0%
AAACCCAGGATTGAATGCAA+AGG - tig0004828:129028-129047 None:intergenic 40.0%
GAAACATTGAAAGCAAACCC+AGG - tig0004828:129042-129061 None:intergenic 40.0%
GAAATTTCAGCCAACGACAA+AGG + tig0004828:129154-129173 Msa1341400:CDS 40.0%
TCCATCTACATTCCATGATG+AGG + tig0004828:129203-129222 Msa1341400:CDS 40.0%
CCATCTACATTCCATGATGA+GGG + tig0004828:129204-129223 Msa1341400:CDS 40.0%
TCCTTGCCTGATATGGTAAT+AGG + tig0004828:129295-129314 Msa1341400:CDS 40.0%
ACCTATTACCATATCAGGCA+AGG - tig0004828:129299-129318 None:intergenic 40.0%
TGAAAGTGATACCGCAGATA+AGG + tig0004828:129411-129430 Msa1341400:CDS 40.0%
CACAACAATGAACCTAAGGA+GGG + tig0004828:129565-129584 Msa1341400:CDS 40.0%
CTTCAGCATTTGCAAAACAC+TGG + tig0004828:129594-129613 Msa1341400:CDS 40.0%
CTCATACTTTGTCAAAGGTG+GGG - tig0004828:129694-129713 None:intergenic 40.0%
GCTCATACTTTGTCAAAGGT+GGG - tig0004828:129695-129714 None:intergenic 40.0%
AGCTCATACTTTGTCAAAGG+TGG - tig0004828:129696-129715 None:intergenic 40.0%
AGCAGCTCATACTTTGTCAA+AGG - tig0004828:129699-129718 None:intergenic 40.0%
! GAACTACATTTTACGCACAG+AGG + tig0004828:129765-129784 Msa1341400:intron 40.0%
CATCATAAACAGATACGCAC+AGG - tig0004828:129849-129868 None:intergenic 40.0%
AGATGCAACTAATTGCATGC+AGG + tig0004828:129976-129995 Msa1341400:intron 40.0%
GATGCAACTAATTGCATGCA+GGG + tig0004828:129977-129996 Msa1341400:intron 40.0%
TGGATATCACCAAACTCTCT+GGG + tig0004828:130440-130459 Msa1341400:CDS 40.0%
TTTCAATCAGGATCATCGCA+TGG + tig0004828:130494-130513 Msa1341400:CDS 40.0%
CGTTAAGACCTCTAAACTGT+TGG - tig0004828:130553-130572 None:intergenic 40.0%
! TCAAGTAACCGCTGTTTCAT+CGG + tig0004828:130640-130659 Msa1341400:CDS 40.0%
ATCAAAACCCGATGAAACAG+CGG - tig0004828:130651-130670 None:intergenic 40.0%
CAGGCATTTGAAGATCCAAA+AGG - tig0004828:130718-130737 None:intergenic 40.0%
GGATCTTCAAATGCCTGAAA+TGG + tig0004828:130721-130740 Msa1341400:CDS 40.0%
CTTCAAATGCCTGAAATGGA+TGG + tig0004828:130725-130744 Msa1341400:CDS 40.0%
!!! TGGATGGTTTTGAAGTTGCA+AGG + tig0004828:130741-130760 Msa1341400:CDS 40.0%
AAGTGCAGAAGAACGCATAA+AGG + tig0004828:130817-130836 Msa1341400:CDS 40.0%
GTTCGTTAGCTATCTCATGA+AGG - tig0004828:130892-130911 None:intergenic 40.0%
CAATACTGTTGAAGAGAACC+TGG + tig0004828:131001-131020 Msa1341400:three_prime_UTR 40.0%
GAGAGCCCTAATTCATAATG+CGG - tig0004828:131091-131110 None:intergenic 40.0%
CATCTTTCTTTGTTCGACAG+TGG - tig0004828:131137-131156 None:intergenic 40.0%
CAGTACTCACTGTCTAATGT+AGG - tig0004828:131310-131329 None:intergenic 40.0%
!! TTTTGGGAAACATTGCCTCA+AGG - tig0004828:131390-131409 None:intergenic 40.0%
GAAGAGGGAGTAATAGGAAA+GGG - tig0004828:127371-127390 None:intergenic 40.0%
AGAAGAGGGAGTAATAGGAA+AGG - tig0004828:127372-127391 None:intergenic 40.0%
ATGAGGGCCATAGTAAGTAT+AGG - tig0004828:128171-128190 None:intergenic 40.0%
AAAGAAGAGGAATCAAGGTG+GGG - tig0004828:128271-128290 None:intergenic 40.0%
CAAAAGAAGAGGAATCAAGG+TGG - tig0004828:128273-128292 None:intergenic 40.0%
GAAGCAGAATGTGTTGGAAT+TGG + tig0004828:128319-128338 Msa1341400:CDS 40.0%
AGCAGAATGTGTTGGAATTG+GGG + tig0004828:128321-128340 Msa1341400:CDS 40.0%
TTTGGAAAGCTCAACAAGTG+TGG - tig0004828:128450-128469 None:intergenic 40.0%
ATTATGCAACTCCAAGGCTT+TGG - tig0004828:128468-128487 None:intergenic 40.0%
CTTGGAGTTGCATAATTGTG+CGG + tig0004828:128472-128491 Msa1341400:CDS 40.0%
AGTTGCATAATTGTGCGGTT+TGG + tig0004828:128477-128496 Msa1341400:CDS 40.0%
AGAGATAAGAAAGAGCAAGG+GGG + tig0004828:128604-128623 Msa1341400:CDS 40.0%
!! ATGAAGTATCGGCATACGAA+TGG - tig0004828:128705-128724 None:intergenic 40.0%
TTCTTCCGAAATCGAACTCA+AGG + tig0004828:128789-128808 Msa1341400:CDS 40.0%
CAAAGCCTTGAGTTCGATTT+CGG - tig0004828:128797-128816 None:intergenic 40.0%
AAGAACAGATGCATGAGACA+AGG - tig0004828:128873-128892 None:intergenic 40.0%
TTTGAGAAAGTGATGAGCCA+TGG + tig0004828:128992-129011 Msa1341400:CDS 40.0%
AGACCTTTGCATTCAATCCT+GGG + tig0004828:129022-129041 Msa1341400:CDS 40.0%
AAACCCAGGATTGAATGCAA+AGG - tig0004828:129028-129047 None:intergenic 40.0%
GAAACATTGAAAGCAAACCC+AGG - tig0004828:129042-129061 None:intergenic 40.0%
GAAATTTCAGCCAACGACAA+AGG + tig0004828:129154-129173 Msa1341400:CDS 40.0%
TCCATCTACATTCCATGATG+AGG + tig0004828:129203-129222 Msa1341400:CDS 40.0%
CCATCTACATTCCATGATGA+GGG + tig0004828:129204-129223 Msa1341400:CDS 40.0%
TCCTTGCCTGATATGGTAAT+AGG + tig0004828:129295-129314 Msa1341400:CDS 40.0%
ACCTATTACCATATCAGGCA+AGG - tig0004828:129299-129318 None:intergenic 40.0%
TGAAAGTGATACCGCAGATA+AGG + tig0004828:129411-129430 Msa1341400:CDS 40.0%
CACAACAATGAACCTAAGGA+GGG + tig0004828:129565-129584 Msa1341400:CDS 40.0%
CTTCAGCATTTGCAAAACAC+TGG + tig0004828:129594-129613 Msa1341400:CDS 40.0%
CTCATACTTTGTCAAAGGTG+GGG - tig0004828:129694-129713 None:intergenic 40.0%
GCTCATACTTTGTCAAAGGT+GGG - tig0004828:129695-129714 None:intergenic 40.0%
AGCTCATACTTTGTCAAAGG+TGG - tig0004828:129696-129715 None:intergenic 40.0%
AGCAGCTCATACTTTGTCAA+AGG - tig0004828:129699-129718 None:intergenic 40.0%
! GAACTACATTTTACGCACAG+AGG + tig0004828:129765-129784 Msa1341400:intron 40.0%
CATCATAAACAGATACGCAC+AGG - tig0004828:129849-129868 None:intergenic 40.0%
AGATGCAACTAATTGCATGC+AGG + tig0004828:129976-129995 Msa1341400:intron 40.0%
GATGCAACTAATTGCATGCA+GGG + tig0004828:129977-129996 Msa1341400:intron 40.0%
TGGATATCACCAAACTCTCT+GGG + tig0004828:130440-130459 Msa1341400:CDS 40.0%
TTTCAATCAGGATCATCGCA+TGG + tig0004828:130494-130513 Msa1341400:CDS 40.0%
CGTTAAGACCTCTAAACTGT+TGG - tig0004828:130553-130572 None:intergenic 40.0%
! TCAAGTAACCGCTGTTTCAT+CGG + tig0004828:130640-130659 Msa1341400:CDS 40.0%
ATCAAAACCCGATGAAACAG+CGG - tig0004828:130651-130670 None:intergenic 40.0%
CAGGCATTTGAAGATCCAAA+AGG - tig0004828:130718-130737 None:intergenic 40.0%
GGATCTTCAAATGCCTGAAA+TGG + tig0004828:130721-130740 Msa1341400:CDS 40.0%
CTTCAAATGCCTGAAATGGA+TGG + tig0004828:130725-130744 Msa1341400:CDS 40.0%
!!! TGGATGGTTTTGAAGTTGCA+AGG + tig0004828:130741-130760 Msa1341400:CDS 40.0%
AAGTGCAGAAGAACGCATAA+AGG + tig0004828:130817-130836 Msa1341400:CDS 40.0%
GTTCGTTAGCTATCTCATGA+AGG - tig0004828:130892-130911 None:intergenic 40.0%
CAATACTGTTGAAGAGAACC+TGG + tig0004828:131001-131020 Msa1341400:three_prime_UTR 40.0%
GAGAGCCCTAATTCATAATG+CGG - tig0004828:131091-131110 None:intergenic 40.0%
CATCTTTCTTTGTTCGACAG+TGG - tig0004828:131137-131156 None:intergenic 40.0%
CAGTACTCACTGTCTAATGT+AGG - tig0004828:131310-131329 None:intergenic 40.0%
!! TTTTGGGAAACATTGCCTCA+AGG - tig0004828:131390-131409 None:intergenic 40.0%
AAGACAAAGACAGGGGTTGT+GGG - tig0004828:127331-127350 None:intergenic 45.0%
AGGAAGGAAGACAAAGACAG+GGG - tig0004828:127338-127357 None:intergenic 45.0%
GAGGAAGGAAGACAAAGACA+GGG - tig0004828:127339-127358 None:intergenic 45.0%
AGAGGAAGGAAGACAAAGAC+AGG - tig0004828:127340-127359 None:intergenic 45.0%
GGAGTAATAGGAAAGGGCAA+GGG - tig0004828:127365-127384 None:intergenic 45.0%
GTAAAGTAGCTCAAGGGGTA+TGG - tig0004828:128057-128076 None:intergenic 45.0%
TGCAGTGGCACATGAAACAA+GGG - tig0004828:128240-128259 None:intergenic 45.0%
TTGCAGTGGCACATGAAACA+AGG - tig0004828:128241-128260 None:intergenic 45.0%
AGAAACAGAAGGAGGCTAGT+TGG + tig0004828:128363-128382 Msa1341400:CDS 45.0%
CAAAGACTTCCTAATCTCGC+GGG - tig0004828:128405-128424 None:intergenic 45.0%
CCAAAGACTTCCTAATCTCG+CGG - tig0004828:128406-128425 None:intergenic 45.0%
TGTTGAGCTTTCCAAAGCCT+TGG + tig0004828:128454-128473 Msa1341400:CDS 45.0%
CGCACAATTATGCAACTCCA+AGG - tig0004828:128474-128493 None:intergenic 45.0%
GATGCCTGATGAGGATAGAA+GGG + tig0004828:128499-128518 Msa1341400:CDS 45.0%
ATCACCCTTCTATCCTCATC+AGG - tig0004828:128506-128525 None:intergenic 45.0%
! TCATGAGTTGAAGCCGAATC+CGG + tig0004828:128535-128554 Msa1341400:CDS 45.0%
TGAAAACTCTTCGCCGGATT+CGG - tig0004828:128551-128570 None:intergenic 45.0%
GAGCTATGAAAACTCTTCGC+CGG - tig0004828:128557-128576 None:intergenic 45.0%
CGAAATCGAACTCAAGGCTT+TGG + tig0004828:128795-128814 Msa1341400:CDS 45.0%
CACTATCTCCATCTCATGGT+GGG - tig0004828:128822-128841 None:intergenic 45.0%
! GGCACAAAAGCATGCAATGA+TGG + tig0004828:128949-128968 Msa1341400:CDS 45.0%
AAGTGATGAGCCATGGAATG+AGG + tig0004828:128999-129018 Msa1341400:CDS 45.0%
GAGACCTTTGCATTCAATCC+TGG + tig0004828:129021-129040 Msa1341400:CDS 45.0%
CTGGAAACTTCCTTTGTCGT+TGG - tig0004828:129167-129186 None:intergenic 45.0%
CCCTCATCATGGAATGTAGA+TGG - tig0004828:129207-129226 None:intergenic 45.0%
TGGTAATAGGTGATGAGGCA+AGG + tig0004828:129308-129327 Msa1341400:CDS 45.0%
GGGAACTAGTACCAGTTATC+TGG - tig0004828:129504-129523 None:intergenic 45.0%
GGTACTAGTTCCCATTCAGA+TGG + tig0004828:129511-129530 Msa1341400:CDS 45.0%
GCACCACAACAATGAACCTA+AGG + tig0004828:129561-129580 Msa1341400:CDS 45.0%
CCTCCTTAGGTTCATTGTTG+TGG - tig0004828:129567-129586 None:intergenic 45.0%
CCACAACAATGAACCTAAGG+AGG + tig0004828:129564-129583 Msa1341400:CDS 45.0%
CATTTGCAAAACACTGGTGC+AGG + tig0004828:129600-129619 Msa1341400:CDS 45.0%
AAAAAGACTCAGCCTGTGCT+TGG + tig0004828:130188-130207 Msa1341400:intron 45.0%
AGCTGCACGTTTAGTGAGAA+GGG + tig0004828:130231-130250 Msa1341400:intron 45.0%
CTGGATATCACCAAACTCTC+TGG + tig0004828:130439-130458 Msa1341400:CDS 45.0%
ATCACCAAACTCTCTGGGTT+TGG + tig0004828:130445-130464 Msa1341400:CDS 45.0%
TAAGAAGCTGCTTGAGAAGC+TGG + tig0004828:130613-130632 Msa1341400:CDS 45.0%
AAGAAGCTGCTTGAGAAGCT+GGG + tig0004828:130614-130633 Msa1341400:CDS 45.0%
! CAAGTAACCGCTGTTTCATC+GGG + tig0004828:130641-130660 Msa1341400:CDS 45.0%
GGAAGTTCCAAAGCCGAAAT+TGG + tig0004828:130771-130790 Msa1341400:CDS 45.0%
TCAAAGGCCAATTTCGGCTT+TGG - tig0004828:130781-130800 None:intergenic 45.0%
CATAAAGGAGAGATGCCTAC+AGG + tig0004828:130832-130851 Msa1341400:CDS 45.0%
ATCCATTCATTCCCACCTGT+AGG - tig0004828:130850-130869 None:intergenic 45.0%
GCTATCTCATGAAGGAGGAT+AGG - tig0004828:130884-130903 None:intergenic 45.0%
CGTTAGCTATCTCATGAAGG+AGG - tig0004828:130889-130908 None:intergenic 45.0%
GTAAGCATCTCCGTACTCTT+TGG - tig0004828:131115-131134 None:intergenic 45.0%
! TCTGCAAGTCTGAAACCTTG+AGG + tig0004828:131372-131391 Msa1341400:three_prime_UTR 45.0%
AAGACAAAGACAGGGGTTGT+GGG - tig0004828:127331-127350 None:intergenic 45.0%
AGGAAGGAAGACAAAGACAG+GGG - tig0004828:127338-127357 None:intergenic 45.0%
GAGGAAGGAAGACAAAGACA+GGG - tig0004828:127339-127358 None:intergenic 45.0%
AGAGGAAGGAAGACAAAGAC+AGG - tig0004828:127340-127359 None:intergenic 45.0%
GGAGTAATAGGAAAGGGCAA+GGG - tig0004828:127365-127384 None:intergenic 45.0%
GTAAAGTAGCTCAAGGGGTA+TGG - tig0004828:128057-128076 None:intergenic 45.0%
TGCAGTGGCACATGAAACAA+GGG - tig0004828:128240-128259 None:intergenic 45.0%
TTGCAGTGGCACATGAAACA+AGG - tig0004828:128241-128260 None:intergenic 45.0%
AGAAACAGAAGGAGGCTAGT+TGG + tig0004828:128363-128382 Msa1341400:CDS 45.0%
CAAAGACTTCCTAATCTCGC+GGG - tig0004828:128405-128424 None:intergenic 45.0%
CCAAAGACTTCCTAATCTCG+CGG - tig0004828:128406-128425 None:intergenic 45.0%
TGTTGAGCTTTCCAAAGCCT+TGG + tig0004828:128454-128473 Msa1341400:CDS 45.0%
CGCACAATTATGCAACTCCA+AGG - tig0004828:128474-128493 None:intergenic 45.0%
GATGCCTGATGAGGATAGAA+GGG + tig0004828:128499-128518 Msa1341400:CDS 45.0%
ATCACCCTTCTATCCTCATC+AGG - tig0004828:128506-128525 None:intergenic 45.0%
! TCATGAGTTGAAGCCGAATC+CGG + tig0004828:128535-128554 Msa1341400:CDS 45.0%
TGAAAACTCTTCGCCGGATT+CGG - tig0004828:128551-128570 None:intergenic 45.0%
GAGCTATGAAAACTCTTCGC+CGG - tig0004828:128557-128576 None:intergenic 45.0%
CGAAATCGAACTCAAGGCTT+TGG + tig0004828:128795-128814 Msa1341400:CDS 45.0%
CACTATCTCCATCTCATGGT+GGG - tig0004828:128822-128841 None:intergenic 45.0%
! GGCACAAAAGCATGCAATGA+TGG + tig0004828:128949-128968 Msa1341400:CDS 45.0%
AAGTGATGAGCCATGGAATG+AGG + tig0004828:128999-129018 Msa1341400:CDS 45.0%
GAGACCTTTGCATTCAATCC+TGG + tig0004828:129021-129040 Msa1341400:CDS 45.0%
CTGGAAACTTCCTTTGTCGT+TGG - tig0004828:129167-129186 None:intergenic 45.0%
CCCTCATCATGGAATGTAGA+TGG - tig0004828:129207-129226 None:intergenic 45.0%
TGGTAATAGGTGATGAGGCA+AGG + tig0004828:129308-129327 Msa1341400:CDS 45.0%
GGGAACTAGTACCAGTTATC+TGG - tig0004828:129504-129523 None:intergenic 45.0%
GGTACTAGTTCCCATTCAGA+TGG + tig0004828:129511-129530 Msa1341400:CDS 45.0%
GCACCACAACAATGAACCTA+AGG + tig0004828:129561-129580 Msa1341400:CDS 45.0%
CCTCCTTAGGTTCATTGTTG+TGG - tig0004828:129567-129586 None:intergenic 45.0%
CCACAACAATGAACCTAAGG+AGG + tig0004828:129564-129583 Msa1341400:CDS 45.0%
CATTTGCAAAACACTGGTGC+AGG + tig0004828:129600-129619 Msa1341400:CDS 45.0%
AAAAAGACTCAGCCTGTGCT+TGG + tig0004828:130188-130207 Msa1341400:intron 45.0%
AGCTGCACGTTTAGTGAGAA+GGG + tig0004828:130231-130250 Msa1341400:intron 45.0%
CTGGATATCACCAAACTCTC+TGG + tig0004828:130439-130458 Msa1341400:CDS 45.0%
ATCACCAAACTCTCTGGGTT+TGG + tig0004828:130445-130464 Msa1341400:CDS 45.0%
TAAGAAGCTGCTTGAGAAGC+TGG + tig0004828:130613-130632 Msa1341400:CDS 45.0%
AAGAAGCTGCTTGAGAAGCT+GGG + tig0004828:130614-130633 Msa1341400:CDS 45.0%
! CAAGTAACCGCTGTTTCATC+GGG + tig0004828:130641-130660 Msa1341400:CDS 45.0%
GGAAGTTCCAAAGCCGAAAT+TGG + tig0004828:130771-130790 Msa1341400:CDS 45.0%
TCAAAGGCCAATTTCGGCTT+TGG - tig0004828:130781-130800 None:intergenic 45.0%
CATAAAGGAGAGATGCCTAC+AGG + tig0004828:130832-130851 Msa1341400:CDS 45.0%
ATCCATTCATTCCCACCTGT+AGG - tig0004828:130850-130869 None:intergenic 45.0%
GCTATCTCATGAAGGAGGAT+AGG - tig0004828:130884-130903 None:intergenic 45.0%
CGTTAGCTATCTCATGAAGG+AGG - tig0004828:130889-130908 None:intergenic 45.0%
GTAAGCATCTCCGTACTCTT+TGG - tig0004828:131115-131134 None:intergenic 45.0%
! TCTGCAAGTCTGAAACCTTG+AGG + tig0004828:131372-131391 Msa1341400:three_prime_UTR 45.0%
GAAGACAAAGACAGGGGTTG+TGG - tig0004828:127332-127351 None:intergenic 50.0%
GGGAGTAATAGGAAAGGGCA+AGG - tig0004828:127366-127385 None:intergenic 50.0%
CACATGAAACAAGGGCAGTG+AGG - tig0004828:128232-128251 None:intergenic 50.0%
GGTGGGGAAAGTAATTGCAG+TGG - tig0004828:128255-128274 None:intergenic 50.0%
TGTGTTGGAATTGGGGCAAG+AGG + tig0004828:128328-128347 Msa1341400:CDS 50.0%
TTGGAATTGGGGCAAGAGGT+TGG + tig0004828:128332-128351 Msa1341400:CDS 50.0%
TGGAATTGGGGCAAGAGGTT+GGG + tig0004828:128333-128352 Msa1341400:CDS 50.0%
! AGGAGGCTAGTTGGCATGTT+AGG + tig0004828:128372-128391 Msa1341400:CDS 50.0%
CCGCGAGATTAGGAAGTCTT+TGG + tig0004828:128403-128422 Msa1341400:CDS 50.0%
GGATGCCTGATGAGGATAGA+AGG + tig0004828:128498-128517 Msa1341400:CDS 50.0%
TTGAGGCCTGATTCTGCACT+CGG + tig0004828:128635-128654 Msa1341400:CDS 50.0%
CTGCGAGTAGTGGTGAATCT+GGG + tig0004828:128660-128679 Msa1341400:CDS 50.0%
TGCGAGTAGTGGTGAATCTG+GGG + tig0004828:128661-128680 Msa1341400:CDS 50.0%
CCACTATCTCCATCTCATGG+TGG - tig0004828:128823-128842 None:intergenic 50.0%
CCACCATGAGATGGAGATAG+TGG + tig0004828:128820-128839 Msa1341400:CDS 50.0%
CCTCCACTATCTCCATCTCA+TGG - tig0004828:128826-128845 None:intergenic 50.0%
! CCATGAGATGGAGATAGTGG+AGG + tig0004828:128823-128842 Msa1341400:CDS 50.0%
TCTCAAATGAGCTCCTTGCC+CGG - tig0004828:128979-128998 None:intergenic 50.0%
GCAAAGGTCTCCTCATTCCA+TGG - tig0004828:129012-129031 None:intergenic 50.0%
GCAAGAAGCTTCCCTCATCA+TGG - tig0004828:129218-129237 None:intergenic 50.0%
GCAGAGATCCTTGCCTGATA+TGG + tig0004828:129288-129307 Msa1341400:CDS 50.0%
ACTTTGTCAAAGGTGGGGAG+AGG - tig0004828:129689-129708 None:intergenic 50.0%
TACGCACAGAGGATGACTCT+TGG + tig0004828:129776-129795 Msa1341400:intron 50.0%
CAGCTGCACGTTTAGTGAGA+AGG + tig0004828:130230-130249 Msa1341400:intron 50.0%
! ACGTTTAGTGAGAAGGGCAC+TGG + tig0004828:130237-130256 Msa1341400:intron 50.0%
!! CGTTTAGTGAGAAGGGCACT+GGG + tig0004828:130238-130257 Msa1341400:intron 50.0%
TGTGCCAAACCCAGAGAGTT+TGG - tig0004828:130452-130471 None:intergenic 50.0%
AACTCTCTGGGTTTGGCACA+AGG + tig0004828:130452-130471 Msa1341400:CDS 50.0%
ACTCTCTGGGTTTGGCACAA+GGG + tig0004828:130453-130472 Msa1341400:CDS 50.0%
AAAGGAGAGATGCCTACAGG+TGG + tig0004828:130835-130854 Msa1341400:CDS 50.0%
AAGGAGAGATGCCTACAGGT+GGG + tig0004828:130836-130855 Msa1341400:CDS 50.0%
TGCCTACAGGTGGGAATGAA+TGG + tig0004828:130845-130864 Msa1341400:CDS 50.0%
! ACTTTTCACCTGCACGTAGC+AGG - tig0004828:130925-130944 None:intergenic 50.0%
AGGGCTCTCTCCAAAGAGTA+CGG + tig0004828:131102-131121 Msa1341400:three_prime_UTR 50.0%
GAAGACAAAGACAGGGGTTG+TGG - tig0004828:127332-127351 None:intergenic 50.0%
GGGAGTAATAGGAAAGGGCA+AGG - tig0004828:127366-127385 None:intergenic 50.0%
CACATGAAACAAGGGCAGTG+AGG - tig0004828:128232-128251 None:intergenic 50.0%
GGTGGGGAAAGTAATTGCAG+TGG - tig0004828:128255-128274 None:intergenic 50.0%
TGTGTTGGAATTGGGGCAAG+AGG + tig0004828:128328-128347 Msa1341400:CDS 50.0%
TTGGAATTGGGGCAAGAGGT+TGG + tig0004828:128332-128351 Msa1341400:CDS 50.0%
TGGAATTGGGGCAAGAGGTT+GGG + tig0004828:128333-128352 Msa1341400:CDS 50.0%
! AGGAGGCTAGTTGGCATGTT+AGG + tig0004828:128372-128391 Msa1341400:CDS 50.0%
CCGCGAGATTAGGAAGTCTT+TGG + tig0004828:128403-128422 Msa1341400:CDS 50.0%
GGATGCCTGATGAGGATAGA+AGG + tig0004828:128498-128517 Msa1341400:CDS 50.0%
TTGAGGCCTGATTCTGCACT+CGG + tig0004828:128635-128654 Msa1341400:CDS 50.0%
CTGCGAGTAGTGGTGAATCT+GGG + tig0004828:128660-128679 Msa1341400:CDS 50.0%
TGCGAGTAGTGGTGAATCTG+GGG + tig0004828:128661-128680 Msa1341400:CDS 50.0%
CCACTATCTCCATCTCATGG+TGG - tig0004828:128823-128842 None:intergenic 50.0%
CCACCATGAGATGGAGATAG+TGG + tig0004828:128820-128839 Msa1341400:CDS 50.0%
CCTCCACTATCTCCATCTCA+TGG - tig0004828:128826-128845 None:intergenic 50.0%
! CCATGAGATGGAGATAGTGG+AGG + tig0004828:128823-128842 Msa1341400:CDS 50.0%
TCTCAAATGAGCTCCTTGCC+CGG - tig0004828:128979-128998 None:intergenic 50.0%
GCAAAGGTCTCCTCATTCCA+TGG - tig0004828:129012-129031 None:intergenic 50.0%
GCAAGAAGCTTCCCTCATCA+TGG - tig0004828:129218-129237 None:intergenic 50.0%
GCAGAGATCCTTGCCTGATA+TGG + tig0004828:129288-129307 Msa1341400:CDS 50.0%
ACTTTGTCAAAGGTGGGGAG+AGG - tig0004828:129689-129708 None:intergenic 50.0%
TACGCACAGAGGATGACTCT+TGG + tig0004828:129776-129795 Msa1341400:intron 50.0%
CAGCTGCACGTTTAGTGAGA+AGG + tig0004828:130230-130249 Msa1341400:intron 50.0%
! ACGTTTAGTGAGAAGGGCAC+TGG + tig0004828:130237-130256 Msa1341400:intron 50.0%
!! CGTTTAGTGAGAAGGGCACT+GGG + tig0004828:130238-130257 Msa1341400:intron 50.0%
TGTGCCAAACCCAGAGAGTT+TGG - tig0004828:130452-130471 None:intergenic 50.0%
AACTCTCTGGGTTTGGCACA+AGG + tig0004828:130452-130471 Msa1341400:CDS 50.0%
ACTCTCTGGGTTTGGCACAA+GGG + tig0004828:130453-130472 Msa1341400:CDS 50.0%
AAAGGAGAGATGCCTACAGG+TGG + tig0004828:130835-130854 Msa1341400:CDS 50.0%
AAGGAGAGATGCCTACAGGT+GGG + tig0004828:130836-130855 Msa1341400:CDS 50.0%
TGCCTACAGGTGGGAATGAA+TGG + tig0004828:130845-130864 Msa1341400:CDS 50.0%
! ACTTTTCACCTGCACGTAGC+AGG - tig0004828:130925-130944 None:intergenic 50.0%
AGGGCTCTCTCCAAAGAGTA+CGG + tig0004828:131102-131121 Msa1341400:three_prime_UTR 50.0%
AAAGACAGGGGTTGTGGGTG+GGG - tig0004828:127326-127345 None:intergenic 55.0%
CAAAGACAGGGGTTGTGGGT+GGG - tig0004828:127327-127346 None:intergenic 55.0%
ACAAAGACAGGGGTTGTGGG+TGG - tig0004828:127328-127347 None:intergenic 55.0%
AAAGGGCAAGGGAGAGAGGA+AGG - tig0004828:127354-127373 None:intergenic 55.0%
TAGGAAAGGGCAAGGGAGAG+AGG - tig0004828:127358-127377 None:intergenic 55.0%
GGATGTTGACCCGCGAGATT+AGG + tig0004828:128393-128412 Msa1341400:CDS 55.0%
! TGCGGTTTGGATGCCTGATG+AGG + tig0004828:128490-128509 Msa1341400:CDS 55.0%
!!! GCAAGGGGGTGTCGATTTTG+AGG + tig0004828:128618-128637 Msa1341400:CDS 55.0%
GCTGCGAGTAGTGGTGAATC+TGG + tig0004828:128659-128678 Msa1341400:CDS 55.0%
AGTGGTGAATCTGGGGACTC+CGG + tig0004828:128668-128687 Msa1341400:CDS 55.0%
ACGAATGGCTGCTACAGCAC+CGG - tig0004828:128690-128709 None:intergenic 55.0%
! GCTTTGGACCCACCATGAGA+TGG + tig0004828:128811-128830 Msa1341400:CDS 55.0%
AGTGGAGGTAGTTGCTGACC+AGG + tig0004828:128838-128857 Msa1341400:CDS 55.0%
AGTTGCTGACCAGGTTGCTG+TGG + tig0004828:128847-128866 Msa1341400:CDS 55.0%
TTTGTGCCTGTTGCAACGCC+CGG - tig0004828:128937-128956 None:intergenic 55.0%
AGCATGCAATGATGGCCAGC+CGG + tig0004828:128957-128976 Msa1341400:CDS 55.0%
CTGAAGCTTAGGCCCTCCTT+AGG - tig0004828:129580-129599 None:intergenic 55.0%
TCAGCCTGTGCTTGGTCTAG+CGG + tig0004828:130196-130215 Msa1341400:intron 55.0%
ACTACCGCTAGACCAAGCAC+AGG - tig0004828:130203-130222 None:intergenic 55.0%
AGAACAGTCCTGCTACGTGC+AGG + tig0004828:130914-130933 Msa1341400:CDS 55.0%
AAAGACAGGGGTTGTGGGTG+GGG - tig0004828:127326-127345 None:intergenic 55.0%
CAAAGACAGGGGTTGTGGGT+GGG - tig0004828:127327-127346 None:intergenic 55.0%
ACAAAGACAGGGGTTGTGGG+TGG - tig0004828:127328-127347 None:intergenic 55.0%
AAAGGGCAAGGGAGAGAGGA+AGG - tig0004828:127354-127373 None:intergenic 55.0%
TAGGAAAGGGCAAGGGAGAG+AGG - tig0004828:127358-127377 None:intergenic 55.0%
GGATGTTGACCCGCGAGATT+AGG + tig0004828:128393-128412 Msa1341400:CDS 55.0%
! TGCGGTTTGGATGCCTGATG+AGG + tig0004828:128490-128509 Msa1341400:CDS 55.0%
!!! GCAAGGGGGTGTCGATTTTG+AGG + tig0004828:128618-128637 Msa1341400:CDS 55.0%
GCTGCGAGTAGTGGTGAATC+TGG + tig0004828:128659-128678 Msa1341400:CDS 55.0%
AGTGGTGAATCTGGGGACTC+CGG + tig0004828:128668-128687 Msa1341400:CDS 55.0%
ACGAATGGCTGCTACAGCAC+CGG - tig0004828:128690-128709 None:intergenic 55.0%
! GCTTTGGACCCACCATGAGA+TGG + tig0004828:128811-128830 Msa1341400:CDS 55.0%
AGTGGAGGTAGTTGCTGACC+AGG + tig0004828:128838-128857 Msa1341400:CDS 55.0%
AGTTGCTGACCAGGTTGCTG+TGG + tig0004828:128847-128866 Msa1341400:CDS 55.0%
TTTGTGCCTGTTGCAACGCC+CGG - tig0004828:128937-128956 None:intergenic 55.0%
AGCATGCAATGATGGCCAGC+CGG + tig0004828:128957-128976 Msa1341400:CDS 55.0%
CTGAAGCTTAGGCCCTCCTT+AGG - tig0004828:129580-129599 None:intergenic 55.0%
TCAGCCTGTGCTTGGTCTAG+CGG + tig0004828:130196-130215 Msa1341400:intron 55.0%
ACTACCGCTAGACCAAGCAC+AGG - tig0004828:130203-130222 None:intergenic 55.0%
AGAACAGTCCTGCTACGTGC+AGG + tig0004828:130914-130933 Msa1341400:CDS 55.0%
GCAGCTCCGAGTGCAGAATC+AGG - tig0004828:128644-128663 None:intergenic 60.0%
GAGACAAGGCCACAGCAACC+TGG - tig0004828:128859-128878 None:intergenic 60.0%
! GCAAAACCGGGCGTTGCAAC+AGG + tig0004828:128928-128947 Msa1341400:CDS 60.0%
GCATGCAATGATGGCCAGCC+GGG + tig0004828:128958-128977 Msa1341400:CDS 60.0%
AAATGAGCTCCTTGCCCGGC+TGG - tig0004828:128975-128994 None:intergenic 60.0%
GCAGCTCCGAGTGCAGAATC+AGG - tig0004828:128644-128663 None:intergenic 60.0%
GAGACAAGGCCACAGCAACC+TGG - tig0004828:128859-128878 None:intergenic 60.0%
! GCAAAACCGGGCGTTGCAAC+AGG + tig0004828:128928-128947 Msa1341400:CDS 60.0%
GCATGCAATGATGGCCAGCC+GGG + tig0004828:128958-128977 Msa1341400:CDS 60.0%
AAATGAGCTCCTTGCCCGGC+TGG - tig0004828:128975-128994 None:intergenic 60.0%
GCACTCGGAGCTGCGAGTAG+TGG + tig0004828:128650-128669 Msa1341400:CDS 65.0%
CAATGATGGCCAGCCGGGCA+AGG + tig0004828:128963-128982 Msa1341400:CDS 65.0%
GCACTCGGAGCTGCGAGTAG+TGG + tig0004828:128650-128669 Msa1341400:CDS 65.0%
CAATGATGGCCAGCCGGGCA+AGG + tig0004828:128963-128982 Msa1341400:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0004828 gene 127309 131420 127309 ID=Msa1341400;Name=Msa1341400
tig0004828 mRNA 127309 131420 127309 ID=Msa1341400-mRNA-1;Parent=Msa1341400;Name=Msa1341400-mRNA-1;_AED=0.01;_eAED=0.01;_QI=546|1|1|1|1|1|2|471|764
tig0004828 exon 127309 129621 127309 ID=Msa1341400-mRNA-1:exon:3097;Parent=Msa1341400-mRNA-1
tig0004828 exon 130422 131420 130422 ID=Msa1341400-mRNA-1:exon:3098;Parent=Msa1341400-mRNA-1
tig0004828 five_prime_UTR 127309 127854 127309 ID=Msa1341400-mRNA-1:five_prime_utr;Parent=Msa1341400-mRNA-1
tig0004828 CDS 127855 129621 127855 ID=Msa1341400-mRNA-1:cds;Parent=Msa1341400-mRNA-1
tig0004828 CDS 130422 130949 130422 ID=Msa1341400-mRNA-1:cds;Parent=Msa1341400-mRNA-1
tig0004828 three_prime_UTR 130950 131420 130950 ID=Msa1341400-mRNA-1:three_prime_utr;Parent=Msa1341400-mRNA-1
Gene Sequence

>Msa1341400

ATGGAAAAAGGGTTTTCTTCTTCTTCTTTGTTGTTATTGCTGTTGTTGATGATTAGTTCTCTTGTGATATCTGTTTATGGGATTGATGGTGAATATGTACATTGCAACTGTGATGATGATGATGATGGAATTTGGAGTGTACAAAGTATTTTGGTTTGTCAAAAAGTCAGTGACTTTTTCATTGCTATTGCATATTTTTCCATACCCCTTGAGCTACTTTACTTTGTTAGCTACTCCAATGTTCCATTTAAATTGGTATTCCTTCAATTTGTTGCTTTCATAGTTCTATGTGGTTTGACCCATTTACTCAATGCCTATACTTACTATGGCCCTCATTCCTTTCAATTGTTTCTATCTCTCACTGTTGCTAAATTCCTCACTGCCCTTGTTTCATGTGCCACTGCAATTACTTTCCCCACCTTGATTCCTCTTCTTTTGAAAATCAAGGTGAGGGAGTTTTTCTTGAAGCAGAATGTGTTGGAATTGGGGCAAGAGGTTGGGATTATGAAGAAACAGAAGGAGGCTAGTTGGCATGTTAGGATGTTGACCCGCGAGATTAGGAAGTCTTTGGATAAGCATACAATTTTGTATACCACACTTGTTGAGCTTTCCAAAGCCTTGGAGTTGCATAATTGTGCGGTTTGGATGCCTGATGAGGATAGAAGGGTGATGCATTTGACTCATGAGTTGAAGCCGAATCCGGCGAAGAGTTTTCATAGCTCTATTTCTGTAAATGATTTGGATGTGTTAGAGATAAGAAAGAGCAAGGGGGTGTCGATTTTGAGGCCTGATTCTGCACTCGGAGCTGCGAGTAGTGGTGAATCTGGGGACTCCGGTGCTGTAGCAGCCATTCGTATGCCGATACTTCATGTTTCAAATTTTAAAGGAGGGACACCGGAGTTTGTTGAGACATCTTATGCTATACTAGTTTTGGTTCTTCCGAAATCGAACTCAAGGCTTTGGACCCACCATGAGATGGAGATAGTGGAGGTAGTTGCTGACCAGGTTGCTGTGGCCTTGTCTCATGCATCTGTTCTTGAAGAGTCTCAGCTAATGAGACAGAAACTTAAAGAGCAAAACCGGGCGTTGCAACAGGCACAAAAGCATGCAATGATGGCCAGCCGGGCAAGGAGCTCATTTGAGAAAGTGATGAGCCATGGAATGAGGAGACCTTTGCATTCAATCCTGGGTTTGCTTTCAATGTTTCAAGAGGATAATATAAGATCTGAACAAAAGATTGTTGTTGACACAATATTGAAAGTTAGCAATTCGCTCTCGCGTTTGATAAATGATGTAATGGAAATTTCAGCCAACGACAAAGGAAGTTTCCAGTTAGAGTTGAAACATTTCCATCTACATTCCATGATGAGGGAAGCTTCTTGCATTGCCAAGTGTTTGTGTGTGTATAAAGGCTTTGGTCTTGAAATTGACGTGCAGAGATCCTTGCCTGATATGGTAATAGGTGATGAGGCAAGGTCTTTTCAATTAATTTTGCATATGATCGGCTATTTATTGAACTTATATGATAGAGGGACTCTCATTTTTCGAGTTTCTTTTGAAAGTGATACCGCAGATAAGGATGATAGAAGTTCTGGAATATTAAGATCAAGCATGCAAAATGATAATGTGTATATAAAGTTTAATTTCCAGATAACTGGTACTAGTTCCCATTCAGATGGACCAATTTTAAATAGTGCTAGTAGGATGCACCACAACAATGAACCTAAGGAGGGCCTAAGCTTCAGCATTTGCAAAACACTGGTGCAGATGATGGAAGGTAATATCTGGATATCACCAAACTCTCTGGGTTTGGCACAAGGGATGACACTTCTTCTCAAGTTTCAATCAGGATCATCGCATGGAAGATTCGTTCTTGCTAACAAAGATTTTTCAAACCAACAGTTTAGAGGTCTTAACGTTATTTTAGCCGATGATGATAATGTAAACAGGACTGTAACTAAGAAGCTGCTTGAGAAGCTGGGTTGTCAAGTAACCGCTGTTTCATCGGGTTTTGATTGTTTGGCTGCTATAACTGCCTCCAGTATACCATTCAAAATCATCCTTTTGGATCTTCAAATGCCTGAAATGGATGGTTTTGAAGTTGCAAGGAAGATTCGGAAGTTCCAAAGCCGAAATTGGCCTTTGATTATTGCTCTTACAGCAAGTGCAGAAGAACGCATAAAGGAGAGATGCCTACAGGTGGGAATGAATGGATTGATTCGAAAACCTATCCTCCTTCATGAGATAGCTAACGAACTTAGAACAGTCCTGCTACGTGCAGGTGAAAAGTTCTAA
Protein sequence

>Msa1341400

MEKGFSSSSLLLLLLLMISSLVISVYGIDGEYVHCNCDDDDDGIWSVQSILVCQKVSDFFIAIAYFSIPLELLYFVSYSNVPFKLVFLQFVAFIVLCGLTHLLNAYTYYGPHSFQLFLSLTVAKFLTALVSCATAITFPTLIPLLLKIKVREFFLKQNVLELGQEVGIMKKQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKALELHNCAVWMPDEDRRVMHLTHELKPNPAKSFHSSISVNDLDVLEIRKSKGVSILRPDSALGAASSGESGDSGAVAAIRMPILHVSNFKGGTPEFVETSYAILVLVLPKSNSRLWTHHEMEIVEVVADQVAVALSHASVLEESQLMRQKLKEQNRALQQAQKHAMMASRARSSFEKVMSHGMRRPLHSILGLLSMFQEDNIRSEQKIVVDTILKVSNSLSRLINDVMEISANDKGSFQLELKHFHLHSMMREASCIAKCLCVYKGFGLEIDVQRSLPDMVIGDEARSFQLILHMIGYLLNLYDRGTLIFRVSFESDTADKDDRSSGILRSSMQNDNVYIKFNFQITGTSSHSDGPILNSASRMHHNNEPKEGLSFSICKTLVQMMEGNIWISPNSLGLAQGMTLLLKFQSGSSHGRFVLANKDFSNQQFRGLNVILADDDNVNRTVTKKLLEKLGCQVTAVSSGFDCLAAITASSIPFKIILLDLQMPEMDGFEVARKIRKFQSRNWPLIIALTASAEERIKERCLQVGMNGLIRKPILLHEIANELRTVLLRAGEKF*