AlfalfaGEDB | Msa1129870

M. sativa cultivar zhongmu-4 / Msa1129870

KEGG: K14509
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532
PFAM: PF01590.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1129870	XP_003626476.1	97.650	766	15	2	1	764	1	765	0.0	1531

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1129870	sp\|Q9ZTP3\|EIN4_ARATH	61.968	752	262	8	29	762	21	766	0.0	919

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1129870	G7L2X0	97.650	766	15	2	1	764	1	765	0.0	1531

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TFs/TRs:

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Gene ID	Type	Classification
Msa1129870	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0047550	Msa1129870	0.998534	5.753980e-268	-8.615850e-47
Msa1084350	Msa1129870	0.995950	1.109679e-221	-8.615850e-47
Msa1129870	Msa1341400	0.966100	1.795137e-125	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1129870	MtrunA17_Chr7g0274831	97.650	766	15	2	1	764	1	765	0.0	1531
Msa1129870	MtrunA17_Chr1g0190021	72.335	741	196	6	31	764	24	762	0.0	1078
Msa1129870	MtrunA17_Chr1g0186431	57.483	755	307	7	15	760	8	757	0.0	887
Msa1129870	MtrunA17_Chr1g0168161	52.926	769	338	10	1	757	1	757	0.0	803
Msa1129870	MtrunA17_Chr4g0013831	39.625	747	412	15	35	759	5	734	5.82e-166	497
Msa1129870	MtrunA17_Chr7g0269631	37.838	629	327	15	35	634	5	598	1.17e-110	350
Msa1129870	MtrunA17_Chr4g0077091	53.425	73	33	1	689	760	1	73	2.13e-20	85.9
Msa1129870	MtrunA17_Chr8g0377481	34.028	144	82	4	627	758	826	968	1.66e-17	87.4
Msa1129870	MtrunA17_Chr8g0377481	22.139	402	257	11	355	705	371	767	4.13e-14	76.6
Msa1129870	MtrunA17_Chr3g0122391	23.174	397	241	9	355	697	419	805	1.72e-16	84.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1129870	AT3G04580.2	61.968	752	262	8	29	762	21	766	0.0	919
Msa1129870	AT3G04580.1	61.968	752	262	8	29	762	21	766	0.0	919
Msa1129870	AT3G23150.1	51.724	783	334	14	7	762	6	771	0.0	730
Msa1129870	AT3G23150.2	52.421	599	256	10	7	590	6	590	0.0	564
Msa1129870	AT1G04310.1	46.377	621	306	11	10	615	10	618	6.84e-173	511
Msa1129870	AT1G04310.2	46.377	621	306	11	10	615	10	618	6.84e-173	511
Msa1129870	AT1G66340.1	39.467	750	403	18	35	757	4	729	3.00e-163	490
Msa1129870	AT2G40940.1	38.648	577	338	10	54	621	21	590	3.44e-112	353
Msa1129870	AT1G27320.1	22.343	461	314	6	336	757	410	865	9.05e-20	95.1
Msa1129870	AT1G27320.1	29.927	137	75	3	637	753	889	1024	3.85e-13	73.9

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Find 225 sgRNAs with CRISPR-Local

Find 602 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGAGGAATCAAGGT+GGG	0.554060	7_3:+81885841	None:intergenic
AAAATAATGAAACTAATTTG+TGG	0.483738	7_3:+81886482	None:intergenic
AAAATCATAACTTTGACCAC+TGG	0.492004	7_3:-81886318	Msa1129870:five_prime_UTR
AAACCCAGGATTGAATGCAA+AGG	0.645170	7_3:+81885085	None:intergenic
AAAGAAGAGGAATCAAGGTG+GGG	0.631154	7_3:+81885842	None:intergenic
AAAGACAGGGGTTGTGGGTG+GGG	0.382578	7_3:+81886786	None:intergenic
AAAGGAGAGATGCCTACAGG+TGG	0.625741	7_3:-81883275	Msa1129870:CDS
AAATGAGCTCCTTGCCTGGC+TGG	0.400987	7_3:+81885138	None:intergenic
AAATTTGAAACATGAAGTAT+CGG	0.504455	7_3:+81885397	None:intergenic
AACAAAGTAAAGTAGCTCAA+GGG	0.554101	7_3:+81886050	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTGAACTTTGAATAGAAG+AGG	+	chr7_3:81882790-81882809	None:intergenic	30.0%
AACGTGTGTACAAATTTCAA+TGG	+	chr7_3:81882951-81882970	None:intergenic	30.0%
GTTTAGATCTAAATGAGCTA+TGG	-	chr7_3:81883101-81883120	Msa1129870:three_prime_UTR	30.0%
AACCTAACAAACAACATAGA+TGG	+	chr7_3:81883141-81883160	None:intergenic	30.0%
TTACTAATACAGTTCCCAAA+AGG	+	chr7_3:81883173-81883192	None:intergenic	30.0%
AAAATCATAACTTTGACCAC+TGG	-	chr7_3:81883195-81883214	Msa1129870:CDS	30.0%
GTTTATGTTGCAATGGAAAA+AGG	-	chr7_3:81883246-81883265	Msa1129870:CDS	30.0%
TCTCTTGTGATATCTGTTTA+TGG	-	chr7_3:81883315-81883334	Msa1129870:CDS	30.0%
CTCTTGTGATATCTGTTTAT+GGG	-	chr7_3:81883316-81883335	Msa1129870:CDS	30.0%
ATATCTGTTTATGGGATTGA+TGG	-	chr7_3:81883324-81883343	Msa1129870:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	81882713	81886822	81882713	ID=Msa1129870;Name=Msa1129870
chr7_3	mRNA	81882713	81886822	81882713	ID=Msa1129870-mRNA-1;Parent=Msa1129870;Name=Msa1129870-mRNA-1;_AED=0.01;_eAED=0.01;_QI=545\|1\|1\|1\|1\|1\|2\|470\|764
chr7_3	exon	81882713	81883710	81882713	ID=Msa1129870-mRNA-1:exon:23936;Parent=Msa1129870-mRNA-1
chr7_3	exon	81884511	81886822	81884511	ID=Msa1129870-mRNA-1:exon:23935;Parent=Msa1129870-mRNA-1
chr7_3	five_prime_UTR	81886278	81886822	81886278	ID=Msa1129870-mRNA-1:five_prime_utr;Parent=Msa1129870-mRNA-1
chr7_3	CDS	81884511	81886277	81884511	ID=Msa1129870-mRNA-1:cds;Parent=Msa1129870-mRNA-1
chr7_3	CDS	81883183	81883710	81883183	ID=Msa1129870-mRNA-1:cds;Parent=Msa1129870-mRNA-1
chr7_3	three_prime_UTR	81882713	81883182	81882713	ID=Msa1129870-mRNA-1:three_prime_utr;Parent=Msa1129870-mRNA-1

Gene Sequence

>Msa1129870

ATGGAAAAAGGGTTTTCTTCTTCTTCTTTGTTGTTATTGCTGTTGTTGATGATTAGTTCTCTTGTGATATCTGTTTATGGGATTGATGGTGAATATGTACATTGCAACTGTGATGATGATGATGATGGAATTTGGAGTGTACAAAGTATTTTGGTTTGTCAAAAAGTCAGTGACTTTTTCATTGCTATTGCATATTTTTCCATACCCCTTGAGCTACTTTACTTTGTTAGCTACTCCAATGTTCCATTTAAATTGGTATTCCTTCAATTTGTTGCTTTCATAGTTCTATGTGGTTTGACCCATTTACTCAATGCCTATACTTACTATGGCCCTCATTCCTTTCAATTGTTTCTATCTCTCACTGTTGCTAAATTCCTCACTGCCCTTGTTTCATGTGCCACTGCAATTACTTTCCCCACCTTGATTCCTCTTCTTTTGAAAATCAAGGTGAGGGAGTTTTTCTTGAAGCAGAATGTGTTGGAATTGGGGCAAGAGGTTGGGATTATGAAGAAACAGAAGGAGGCTAGTTGGCATGTTAGGATGTTGACCCGCGAGATTAGGAAGTCTTTGGATAAGCATACAATTTTGTATACCACACTTGTTGAGCTTTCCAAAGCCTTGGAGTTGCATAATTGTGCGGTTTGGATGCCTGATGAGGATAGAAGGGTGATGCATTTGACTCATGAGTTGAAGCCGAATCCGGCGAAGAGTTTTCATAGCTCTATTTCTGTAAATGATTTGGATGTGTTAGAGATAAGAAAGAGCAAGGGGGTGTCGATTTTGAGGCCTGATTCTGCACTCGGAGCTGCGAGTAGTGGTGAATCTGGGGACTCCGGTGCTGTAGCAGCCATTCGTATGCCGATACTTCATGTTTCAAATTTTAAAGGAGGGACACCGGAGTTTGTTGAGACATCTTATGCTATACTAGTTTTGGTTCTTCCGAAATCGAACTCAAGGCTTTGGACCCACCATGAGATGGAGATAGTGGAGGTAGTTGCTGACCAGGTTGCTGTGGCCTTGTCTCATGCATCTGTTCTTGAAGAGTCTCAGCTAATGAGACAGAAACTTAAAGAGCAAAACCGGGCGTTGCAACAGGCACAAAAGCATGCAATGATGGCCAGCCAGGCAAGGAGCTCATTTGAGAAAGTGATGAGCCATGGAATGAGGAGACCTTTGCATTCAATCCTGGGTTTGCTTTCAATGTTTCAAGAGGATAATATAAGATCTGAACAAAAGATTGTTGTTGACACAATATTGAAAGTTAGCAATTCGCTCTCGCGTTTGATAAATGATGTAATGGAAATTTCAGCCAACGACAAAGGAAGTTTCCAGTTAGAGTTGAAACATTTCCATCTACATTCCACGATGAGGGAAGCTTCTTGCATTGCCAAGTGTTTGTGTGTGTATAAAGGCTTTGGTCTTGAAATTGACGTGCAGAGATCCTTGCCTGATATGGTAATAGGTGATGAGGCAAGGTCTTTTCAATTAATTTTGCATATGATCGGCTATTTATTGAACTTATATGATAGAGGGACTCTCATTTTTCGAGTTTCTTTTGAAAGTGATACCGCAGATAAGGATGATAGAAGTTCTGGAATATTAAGATCAAGCATGCAAAATGATAATGTGTATATAAAGTTTAATTTCCAGATAACTGGTACTAGTTCCCATTCAGATGGACCAATTTTAAATAGTGCTAGTAGGATGCACCACAACAATGAACCTAAGGAGGGCCTAAGCTTCAGCATTTGCAAAACACTGGTGCAGATGATGGAAGGTAATATCTGGATATCACCAAACTCTCTGGGTTTGGCACAAGGGATGACACTTCTTCTCAAGTTTCAATCAGGATCATCGCATGGAAGATTCGTTCTTGCTAACAAAGATTTTTCAAACCAACAGTTTAGAGGTCTTAACGTTATTTTAGCCGATGATGATAATGTAAACAGGACTGTAACTAAGAAGCTGCTTGAGAAGCTGGGTTGTCAAGTAACCGCTGTTTCATCGGGTTTTGATTGTTTGGCTGCTATAACTGCCTCCAGTATACCATTCAAAATCATCCTTTTGGATCTTCAAATGCCTGAAATGGATGGTTTTGAAGTTGCAAGGAAGATTCGGAAGTTCCAAAGCCGAAATTGGCCTTTGATTATTGCTCTTACAGCAAGTGCAGAAGAACGCATAAAGGAGAGATGCCTACAGGTGGGAATGAATGGATTGATTCGAAAACCTATCCTCCTTCATGAGATAGCTAACGAACTTAGAACAGTCCTGCTACGTGCAGGTGAAAAGTTCTAA

Protein sequence

>Msa1129870

MEKGFSSSSLLLLLLLMISSLVISVYGIDGEYVHCNCDDDDDGIWSVQSILVCQKVSDFFIAIAYFSIPLELLYFVSYSNVPFKLVFLQFVAFIVLCGLTHLLNAYTYYGPHSFQLFLSLTVAKFLTALVSCATAITFPTLIPLLLKIKVREFFLKQNVLELGQEVGIMKKQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKALELHNCAVWMPDEDRRVMHLTHELKPNPAKSFHSSISVNDLDVLEIRKSKGVSILRPDSALGAASSGESGDSGAVAAIRMPILHVSNFKGGTPEFVETSYAILVLVLPKSNSRLWTHHEMEIVEVVADQVAVALSHASVLEESQLMRQKLKEQNRALQQAQKHAMMASQARSSFEKVMSHGMRRPLHSILGLLSMFQEDNIRSEQKIVVDTILKVSNSLSRLINDVMEISANDKGSFQLELKHFHLHSTMREASCIAKCLCVYKGFGLEIDVQRSLPDMVIGDEARSFQLILHMIGYLLNLYDRGTLIFRVSFESDTADKDDRSSGILRSSMQNDNVYIKFNFQITGTSSHSDGPILNSASRMHHNNEPKEGLSFSICKTLVQMMEGNIWISPNSLGLAQGMTLLLKFQSGSSHGRFVLANKDFSNQQFRGLNVILADDDNVNRTVTKKLLEKLGCQVTAVSSGFDCLAAITASSIPFKIILLDLQMPEMDGFEVARKIRKFQSRNWPLIIALTASAEERIKERCLQVGMNGLIRKPILLHEIANELRTVLLRAGEKF*