Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049900 | XP_013465755.1 | 95.972 | 422 | 12 | 2 | 1 | 422 | 1 | 417 | 0.0 | 821 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049900 | sp|Q6MEG4|RSMH_PARUW | 40.058 | 342 | 171 | 5 | 82 | 422 | 6 | 314 | 2.90e-75 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049900 | A0A072VDX8 | 95.972 | 422 | 12 | 2 | 1 | 422 | 1 | 417 | 0.0 | 821 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0049900 | Msa0056050 | 0.985800 | 1.050234e-164 | -8.615850e-47 |
| Msa0049900 | Msa1388840 | 0.935537 | 7.255776e-97 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049900 | MtrunA17_Chr1g0148351 | 95.972 | 422 | 12 | 2 | 1 | 422 | 1 | 417 | 0.0 | 821 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0049900 | AT5G10910.1 | 63.130 | 377 | 126 | 5 | 51 | 422 | 66 | 434 | 1.63e-152 | 439 |
Find 110 sgRNAs with CRISPR-Local
Find 340 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATATGTCTTCTGCTTTA+AGG | 0.094672 | 1_2:+3412055 | None:intergenic |
| ACATTTCTTAATATAATTAA+AGG | 0.204441 | 1_2:-3408537 | Msa0049900:CDS |
| CAGAAGACATATTAAATTCT+TGG | 0.206992 | 1_2:-3412047 | Msa0049900:CDS |
| TTTCTTGGTCTTTGTGATTC+TGG | 0.209292 | 1_2:+3414267 | None:intergenic |
| GAACAAACAAGTACACAAAA+TGG | 0.249164 | 1_2:-3414413 | Msa0049900:exon |
| TCTTCTTCTGATGGCGTAAT+TGG | 0.258841 | 1_2:+3408384 | None:intergenic |
| GGCCGTATCCTAAGGGATTA+TGG | 0.262340 | 1_2:-3412009 | Msa0049900:CDS |
| ATCCCGCATCAGTTCAGTTT+TGG | 0.280708 | 1_2:-3413066 | Msa0049900:CDS |
| TGTTATATCCTTTCACAGTT+TGG | 0.342262 | 1_2:-3408580 | Msa0049900:CDS |
| ACATTCCACTACCGACTTGC+TGG | 0.344512 | 1_2:-3411923 | Msa0049900:CDS |
| TTCCTTGGCAAGTGCTGCTT+CGG | 0.352948 | 1_2:+3414243 | None:intergenic |
| CTCATTCAGCGTGTGACTCC+TGG | 0.359723 | 1_2:-3411898 | Msa0049900:CDS |
| AGAATGTGGTGAATGAGTTT+AGG | 0.363731 | 1_2:+3414334 | None:intergenic |
| GTTACTACCACAGTGAGTTT+AGG | 0.366864 | 1_2:-3414440 | Msa0049900:five_prime_UTR |
| CACATCAAATCTGTGCTTAG+AGG | 0.369280 | 1_2:-3412993 | Msa0049900:CDS |
| ATTATGGGGAAGAGAGTAAT+TGG | 0.369556 | 1_2:-3411993 | Msa0049900:CDS |
| GAAAGAAGTTAAGGAAGAAT+TGG | 0.378340 | 1_2:+3414105 | None:intergenic |
| TCTTTCGTTGATTGTACTCT+TGG | 0.378918 | 1_2:-3414088 | Msa0049900:CDS |
| AGAGTTGCAATAATGATCTT+AGG | 0.381830 | 1_2:-3408491 | Msa0049900:CDS |
| TGTTATGCTTTCTGAAGTAT+TGG | 0.385927 | 1_2:-3414137 | Msa0049900:CDS |
| ATACGGCCCACTTCAGTATC+TGG | 0.387830 | 1_2:+3412024 | None:intergenic |
| AATACTTCAGAAAGCATAAC+AGG | 0.389337 | 1_2:+3414139 | None:intergenic |
| GAACGGGAGAGGAGCACTTA+GGG | 0.398110 | 1_2:-3412971 | Msa0049900:CDS |
| CAAGTAATGCCTGGATCAAA+TGG | 0.400903 | 1_2:-3408426 | Msa0049900:CDS |
| GAAGTAGAAGTGCAAAGCTC+AGG | 0.404929 | 1_2:-3408344 | Msa0049900:CDS |
| CTCATCAGTAGAAAAGTTCA+AGG | 0.414662 | 1_2:-3408214 | Msa0049900:three_prime_UTR |
| TTAGGGGATGCGTCTATTGA+TGG | 0.431436 | 1_2:-3412954 | Msa0049900:CDS |
| GTTCTGAGATTTGAAGAAGA+AGG | 0.436928 | 1_2:+3414307 | None:intergenic |
| TGAAAGTGTTTACTGTGTTA+AGG | 0.437606 | 1_2:-3413025 | Msa0049900:CDS |
| AAGTTCTCCTCTTCTTCTGA+TGG | 0.438853 | 1_2:+3408375 | None:intergenic |
| AAATCTGTGCTTAGAGGAAC+GGG | 0.439542 | 1_2:-3412987 | Msa0049900:CDS |
| GATTGTACTCTTGGTGCTGC+TGG | 0.441916 | 1_2:-3414079 | Msa0049900:CDS |
| ACAATCAACGAAAGAAGTTA+AGG | 0.442987 | 1_2:+3414096 | None:intergenic |
| GCCGTATCCTAAGGGATTAT+GGG | 0.446424 | 1_2:-3412008 | Msa0049900:CDS |
| TACCACAGTGAGTTTAGGTC+TGG | 0.451776 | 1_2:-3414435 | Msa0049900:five_prime_UTR |
| ATGTAATCCACCTTCTAAAC+GGG | 0.452823 | 1_2:+3411942 | None:intergenic |
| GTGGTGAATGAGTTTAGGTT+TGG | 0.453543 | 1_2:+3414339 | None:intergenic |
| TGAATGGAATAGGTGATTAG+AGG | 0.456208 | 1_2:-3413152 | Msa0049900:intron |
| GGCAGTCAAAACAAGAATAG+AGG | 0.456791 | 1_2:+3408625 | None:intergenic |
| TGATGGCATCTTGATGGACC+TGG | 0.458496 | 1_2:-3412937 | Msa0049900:CDS |
| TCTCTTCCCCATAATCCCTT+AGG | 0.460827 | 1_2:+3412001 | None:intergenic |
| GAAATGAAGACATGGGAGAA+GGG | 0.463988 | 1_2:-3408515 | Msa0049900:CDS |
| ATTGTCCAAGCCCGTTTAGA+AGG | 0.466264 | 1_2:-3411952 | Msa0049900:CDS |
| AATGTAATCCACCTTCTAAA+CGG | 0.467914 | 1_2:+3411941 | None:intergenic |
| GGAACGGGAGAGGAGCACTT+AGG | 0.470617 | 1_2:-3412972 | Msa0049900:CDS |
| CTGAAGTGGGCCGTATCCTA+AGG | 0.471585 | 1_2:-3412017 | Msa0049900:CDS |
| CCAACAAAATACTTCAGCTC+TGG | 0.471925 | 1_2:+3413125 | None:intergenic |
| AACAAACAAGTACACAAAAT+GGG | 0.481063 | 1_2:-3414412 | Msa0049900:exon |
| AAGAAGAAGGAGAGAGAATG+TGG | 0.481759 | 1_2:+3414320 | None:intergenic |
| TGATATGCGCATGGATCCTC+AGG | 0.483397 | 1_2:-3412550 | Msa0049900:intron |
| GTCTATTGATGGCATCTTGA+TGG | 0.483474 | 1_2:-3412943 | Msa0049900:CDS |
| AGAATAATTCCATTTGATCC+AGG | 0.483518 | 1_2:+3408417 | None:intergenic |
| CCTGGGCATGTCATCTATGC+AGG | 0.484557 | 1_2:-3412919 | Msa0049900:intron |
| ATCCACCTTCTAAACGGGCT+TGG | 0.488947 | 1_2:+3411947 | None:intergenic |
| GAGATCCAGCAAGTCGGTAG+TGG | 0.489155 | 1_2:+3411918 | None:intergenic |
| GGGATGGATGTGGACCCTGT+GGG | 0.491622 | 1_2:-3413104 | Msa0049900:CDS |
| TATATCCTTTCACAGTTTGG+AGG | 0.492823 | 1_2:-3408577 | Msa0049900:CDS |
| CCCCATAATCCCTTAGGATA+CGG | 0.499959 | 1_2:+3412007 | None:intergenic |
| TTCTCAATGCTTGAAATACC+CGG | 0.500262 | 1_2:+3408685 | None:intergenic |
| CAAAGAGGATTCAGTGTGCT+TGG | 0.501712 | 1_2:-3412585 | Msa0049900:CDS |
| AAATGAAGACATGGGAGAAG+GGG | 0.519276 | 1_2:-3408514 | Msa0049900:CDS |
| AGCACACTGAATCCTCTTTG+AGG | 0.522390 | 1_2:+3412588 | None:intergenic |
| TCTGTCCTCCAAACTGTGAA+AGG | 0.522906 | 1_2:+3408572 | None:intergenic |
| TGGGATGGATGTGGACCCTG+TGG | 0.531423 | 1_2:-3413105 | Msa0049900:CDS |
| TGGATAAGACAAGTAATGCC+TGG | 0.535917 | 1_2:-3408435 | Msa0049900:CDS |
| TCTGGAAGAAGCGGTGGTGA+GGG | 0.537069 | 1_2:+3414285 | None:intergenic |
| TAACAGGTGGAAGGCAAGGT+TGG | 0.538141 | 1_2:-3408722 | Msa0049900:intron |
| GGAAATGAAGACATGGGAGA+AGG | 0.547942 | 1_2:-3408516 | Msa0049900:CDS |
| ATGATAGAAACTAACATTGG+TGG | 0.548892 | 1_2:+3414051 | None:intergenic |
| GGATTCAGTGTGCTTGGTGA+TGG | 0.548903 | 1_2:-3412579 | Msa0049900:CDS |
| GTCCAAGCCCGTTTAGAAGG+TGG | 0.550656 | 1_2:-3411949 | Msa0049900:CDS |
| TTCTGGAAGAAGCGGTGGTG+AGG | 0.550767 | 1_2:+3414284 | None:intergenic |
| CAAATCTGTGCTTAGAGGAA+CGG | 0.551524 | 1_2:-3412988 | Msa0049900:CDS |
| TGAGCCGTGTCACTCCCCAC+AGG | 0.557923 | 1_2:+3413089 | None:intergenic |
| GTCCAAAACTGAACTGATGC+GGG | 0.565422 | 1_2:+3413064 | None:intergenic |
| AACCGAAGCAGCACTTGCCA+AGG | 0.567853 | 1_2:-3414245 | Msa0049900:CDS |
| GCAGTCAAAACAAGAATAGA+GGG | 0.571058 | 1_2:+3408626 | None:intergenic |
| TTGGATAAAGACAGCAACCC+GGG | 0.572572 | 1_2:-3408703 | Msa0049900:CDS |
| GGATGGATGTGGACCCTGTG+GGG | 0.572979 | 1_2:-3413103 | Msa0049900:CDS |
| ACTGTAACAGGTGGAAGGCA+AGG | 0.580203 | 1_2:-3408726 | Msa0049900:intron |
| ATTAAAGGAAATGAAGACAT+GGG | 0.581318 | 1_2:-3408522 | Msa0049900:CDS |
| AATTACGCCATCAGAAGAAG+AGG | 0.582706 | 1_2:-3408382 | Msa0049900:CDS |
| TGATGAACTGAAGACTCTTG+AGG | 0.586961 | 1_2:-3408652 | Msa0049900:CDS |
| AAGTAGAAGTGCAAAGCTCA+GGG | 0.588150 | 1_2:-3408343 | Msa0049900:CDS |
| TAATTATTAAAGCAAAGATA+CGG | 0.594374 | 1_2:+3408243 | None:intergenic |
| AATTAAAGGAAATGAAGACA+TGG | 0.596968 | 1_2:-3408523 | Msa0049900:CDS |
| CGTCCAAAACTGAACTGATG+CGG | 0.599707 | 1_2:+3413063 | None:intergenic |
| TCTCAATGCTTGAAATACCC+GGG | 0.602177 | 1_2:+3408686 | None:intergenic |
| CCTGCATAGATGACATGCCC+AGG | 0.608670 | 1_2:+3412919 | None:intergenic |
| TAGGTGGATGATCCTCAAAG+AGG | 0.608837 | 1_2:-3412600 | Msa0049900:CDS |
| TGAAGTGGGCCGTATCCTAA+GGG | 0.612320 | 1_2:-3412016 | Msa0049900:CDS |
| TGTGCTTAGAGGAACGGGAG+AGG | 0.612987 | 1_2:-3412982 | Msa0049900:CDS |
| ATTACACTGTAACAGGTGGA+AGG | 0.615852 | 1_2:-3408731 | Msa0049900:intron |
| GCTTTGCACTTCTACTTCTG+CGG | 0.620414 | 1_2:+3408349 | None:intergenic |
| AACGGGAGAGGAGCACTTAG+GGG | 0.624347 | 1_2:-3412970 | Msa0049900:CDS |
| GTTGGATAAAGACAGCAACC+CGG | 0.630481 | 1_2:-3408704 | Msa0049900:CDS |
| CTTTGTGATTCTGGAAGAAG+CGG | 0.636349 | 1_2:+3414276 | None:intergenic |
| GAGCCGTGTCACTCCCCACA+GGG | 0.640379 | 1_2:+3413090 | None:intergenic |
| GATGGCATCTTGATGGACCT+GGG | 0.642501 | 1_2:-3412936 | Msa0049900:CDS |
| TTCTTGGCCAGATACTGAAG+TGG | 0.644803 | 1_2:-3412031 | Msa0049900:CDS |
| GGACCCTGTGGGGAGTGACA+CGG | 0.650344 | 1_2:-3413093 | Msa0049900:CDS |
| CCGTATCCTAAGGGATTATG+GGG | 0.656929 | 1_2:-3412007 | Msa0049900:CDS |
| TGGACCACTTGATATGCGCA+TGG | 0.657010 | 1_2:-3412559 | Msa0049900:CDS |
| TGTGATTCTGGAAGAAGCGG+TGG | 0.659825 | 1_2:+3414279 | None:intergenic |
| GGATCCATGCGCATATCAAG+TGG | 0.659855 | 1_2:+3412555 | None:intergenic |
| TCTTGGCCAGATACTGAAGT+GGG | 0.661677 | 1_2:-3412030 | Msa0049900:CDS |
| CTGAATGAGATCCAGCAAGT+CGG | 0.673086 | 1_2:+3411912 | None:intergenic |
| TTCTGATAAAGAACTCGACA+AGG | 0.673094 | 1_2:-3414206 | Msa0049900:CDS |
| TTCCAGACCTAAACTCACTG+TGG | 0.693459 | 1_2:+3414433 | None:intergenic |
| TTTGACTGCCTTGCACCTGG+GGG | 0.710830 | 1_2:-3408612 | Msa0049900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAGAGTTAAATAATTT+TGG | + | chr1_2:3408590-3408609 | None:intergenic | 10.0% |
| !!! | ATACAAAGTATATTTTTTTA+TGG | + | chr1_2:3408965-3408984 | None:intergenic | 10.0% |
| !!! | AAATAAATAGATTTTATAGT+GGG | + | chr1_2:3410846-3410865 | None:intergenic | 10.0% |
| !! | TATAAAATCTATTTATTTGT+GGG | - | chr1_2:3410848-3410867 | Msa0049900:intron | 10.0% |
| !! | AAGAAAAAAATTATAATATG+GGG | + | chr1_2:3410884-3410903 | None:intergenic | 10.0% |
| !!! | AAAATGTTTATAGAAATTTT+GGG | - | chr1_2:3412794-3412813 | Msa0049900:intron | 10.0% |
| !! | ACATTTCTTAATATAATTAA+AGG | - | chr1_2:3413826-3413845 | Msa0049900:intron | 10.0% |
| !!! | TCATATTTTTTTTTTTTTGA+AGG | + | chr1_2:3414236-3414255 | None:intergenic | 10.0% |
| !! | TAATGACATGAAAATTTATA+AGG | + | chr1_2:3408990-3409009 | None:intergenic | 15.0% |
| !!! | AAGATTAAACAAAATCATTT+TGG | + | chr1_2:3409650-3409669 | None:intergenic | 15.0% |
| !!! | AATGATTTTGTTTAATCTTA+TGG | - | chr1_2:3409651-3409670 | Msa0049900:intron | 15.0% |
| !!! | AAATAATTCTTTTCAATTAG+GGG | + | chr1_2:3410814-3410833 | None:intergenic | 15.0% |
| !!! | CAAATAATTCTTTTCAATTA+GGG | + | chr1_2:3410815-3410834 | None:intergenic | 15.0% |
| !! | CTAATTGAAAAGAATTATTT+GGG | - | chr1_2:3410814-3410833 | Msa0049900:intron | 15.0% |
| !! | TAATTGAAAAGAATTATTTG+GGG | - | chr1_2:3410815-3410834 | Msa0049900:intron | 15.0% |
| !!! | CAAATAAATAGATTTTATAG+TGG | + | chr1_2:3410847-3410866 | None:intergenic | 15.0% |
| !! | CTATAAAATCTATTTATTTG+TGG | - | chr1_2:3410847-3410866 | Msa0049900:intron | 15.0% |
| !!! | GTTGTTTTTTAAAATGAAAT+CGG | - | chr1_2:3412461-3412480 | Msa0049900:intron | 15.0% |
| !!! | GAAAATGTTTATAGAAATTT+TGG | - | chr1_2:3412793-3412812 | Msa0049900:intron | 15.0% |
| !!! | AAATGTTTATAGAAATTTTG+GGG | - | chr1_2:3412795-3412814 | Msa0049900:intron | 15.0% |
| !! | TAATTATTAAAGCAAAGATA+CGG | + | chr1_2:3414123-3414142 | None:intergenic | 15.0% |
| !!! | AAAAAAATATGACGTTTTTT+TGG | - | chr1_2:3414244-3414263 | Msa0049900:CDS | 15.0% |
| !!! | AGATATGTGTATTTTTTTTA+AGG | - | chr1_2:3414307-3414326 | Msa0049900:CDS | 15.0% |
| !!! | GATATGTGTATTTTTTTTAA+GGG | - | chr1_2:3414308-3414327 | Msa0049900:CDS | 15.0% |
| !! | TTTATGATAGAAACTAACAT+TGG | + | chr1_2:3408318-3408337 | None:intergenic | 20.0% |
| !! | TAAATACAATATCCAATCAA+CGG | - | chr1_2:3408712-3408731 | Msa0049900:CDS | 20.0% |
| !!! | AATTTTCATGTCATTATAAG+AGG | - | chr1_2:3408994-3409013 | Msa0049900:intron | 20.0% |
| !!! | GAACATTTTTACATAGTATT+TGG | + | chr1_2:3409107-3409126 | None:intergenic | 20.0% |
| !! | AATGTATCATATATAAAGCA+GGG | + | chr1_2:3409477-3409496 | None:intergenic | 20.0% |
| !! | AAAAAGATTAGACAAAATCA+CGG | + | chr1_2:3409618-3409637 | None:intergenic | 20.0% |
| !! | CCTAAAACAAAAAACATATA+AGG | + | chr1_2:3409747-3409766 | None:intergenic | 20.0% |
| !!! | CCTTATATGTTTTTTGTTTT+AGG | - | chr1_2:3409744-3409763 | Msa0049900:intron | 20.0% |
| !!! | TATATGTTTTTTGTTTTAGG+TGG | - | chr1_2:3409747-3409766 | Msa0049900:intron | 20.0% |
| !!! | ATTTCTATAATACAGTTTTG+TGG | - | chr1_2:3410062-3410081 | Msa0049900:intron | 20.0% |
| !! | ATTCATAATATGCTATAACA+TGG | - | chr1_2:3410602-3410621 | Msa0049900:intron | 20.0% |
| !!! | AATAATTCTTTTCAATTAGG+GGG | + | chr1_2:3410813-3410832 | None:intergenic | 20.0% |
| !!! | CCAAATAATTCTTTTCAATT+AGG | + | chr1_2:3410816-3410835 | None:intergenic | 20.0% |
| !! | CCTAATTGAAAAGAATTATT+TGG | - | chr1_2:3410813-3410832 | Msa0049900:intron | 20.0% |
| !!! | GTATAAATAAGTTGTTTTGA+AGG | - | chr1_2:3412253-3412272 | Msa0049900:intron | 20.0% |
| !! | TAAAAATCCACAAGATTAAA+AGG | + | chr1_2:3412868-3412887 | None:intergenic | 20.0% |
| !! | TACAAATTCAATTTCAAAGA+TGG | - | chr1_2:3413013-3413032 | Msa0049900:CDS | 20.0% |
| !!! | CAATACAATTGTTTTTTCTT+GGG | - | chr1_2:3413087-3413106 | Msa0049900:CDS | 20.0% |
| !!! | AAGAATAAAGTATTTATGCA+GGG | - | chr1_2:3413344-3413363 | Msa0049900:intron | 20.0% |
| ! | AACAAACAAGTACACAAAAT+GGG | - | chr1_2:3407951-3407970 | Msa0049900:intron | 25.0% |
| !! | TTCTTCTTATTTGTGTATTG+TGG | - | chr1_2:3408354-3408373 | Msa0049900:CDS | 25.0% |
| !! | CTATTTTCACAAATTCTCTT+AGG | + | chr1_2:3408484-3408503 | None:intergenic | 25.0% |
| !! | TCTAAGATAGCTTATGAAAA+CGG | - | chr1_2:3408551-3408570 | Msa0049900:CDS | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | - | chr1_2:3408664-3408683 | Msa0049900:CDS | 25.0% |
| ! | CTATATAATATTCCGTTGAT+TGG | + | chr1_2:3408727-3408746 | None:intergenic | 25.0% |
| ! | GAATATTATATAGCCAAAGA+TGG | - | chr1_2:3408734-3408753 | Msa0049900:intron | 25.0% |
| ! | ATGTACTTTGTATAATCAAG+TGG | - | chr1_2:3408802-3408821 | Msa0049900:intron | 25.0% |
| ! | TTCAATTTCTTGAAAGGAAT+GGG | + | chr1_2:3409031-3409050 | None:intergenic | 25.0% |
| ! | ATTCAATTTCTTGAAAGGAA+TGG | + | chr1_2:3409032-3409051 | None:intergenic | 25.0% |
| !!! | CTTGTTATTGAATGATTGAA+TGG | - | chr1_2:3409195-3409214 | Msa0049900:intron | 25.0% |
| ! | ATTGAATGATTGAATGGAAT+AGG | - | chr1_2:3409201-3409220 | Msa0049900:intron | 25.0% |
| !! | TTACTGTGTTAAGGAATTTT+AGG | - | chr1_2:3409347-3409366 | Msa0049900:intron | 25.0% |
| ! | CAATGTATCATATATAAAGC+AGG | + | chr1_2:3409478-3409497 | None:intergenic | 25.0% |
| ! | ACAAACAATAAGAAAACTTC+AGG | + | chr1_2:3409723-3409742 | None:intergenic | 25.0% |
| ! | CAATGAAAATTTATGCTCTT+TGG | - | chr1_2:3409860-3409879 | Msa0049900:intron | 25.0% |
| !!! | GTCTCTTTTCTTAATTTGAA+TGG | - | chr1_2:3410010-3410029 | Msa0049900:intron | 25.0% |
| ! | AATATTACAATGAGGTGAAA+AGG | + | chr1_2:3410162-3410181 | None:intergenic | 25.0% |
| ! | CACTCAAAAATATTACAATG+AGG | + | chr1_2:3410170-3410189 | None:intergenic | 25.0% |
| ! | TTAAGTAAATAAGTTACGTG+TGG | - | chr1_2:3410199-3410218 | Msa0049900:intron | 25.0% |
| ! | TTTCTTTCCTATTAAACTGA+TGG | - | chr1_2:3410265-3410284 | Msa0049900:intron | 25.0% |
| ! | TTAATATGTCTTCTGCTTTA+AGG | + | chr1_2:3410311-3410330 | None:intergenic | 25.0% |
| ! | CAGAAGACATATTAAATTCT+TGG | - | chr1_2:3410316-3410335 | Msa0049900:intron | 25.0% |
| !!! | TTATAATATGGGGCTTTATT+AGG | + | chr1_2:3410874-3410893 | None:intergenic | 25.0% |
| !!! | TTGTTTTGAATAAGCTGTTT+TGG | + | chr1_2:3412558-3412577 | None:intergenic | 25.0% |
| !!! | GCAATACAATTGTTTTTTCT+TGG | - | chr1_2:3413086-3413105 | Msa0049900:CDS | 25.0% |
| ! | TTTGTAAAGTAAGCAATCAA+AGG | + | chr1_2:3413269-3413288 | None:intergenic | 25.0% |
| ! | CACTTCTCAAATTCAAAATA+TGG | + | chr1_2:3413301-3413320 | None:intergenic | 25.0% |
| ! | GCATAAATACTTTATTCTTC+TGG | + | chr1_2:3413343-3413362 | None:intergenic | 25.0% |
| !! | GAAGAATAAAGTATTTATGC+AGG | - | chr1_2:3413343-3413362 | Msa0049900:intron | 25.0% |
| !!! | AATTTTGATTACACTGTAAC+AGG | - | chr1_2:3413625-3413644 | Msa0049900:intron | 25.0% |
| ! | AATTAAAGGAAATGAAGACA+TGG | - | chr1_2:3413840-3413859 | Msa0049900:intron | 25.0% |
| ! | ATTAAAGGAAATGAAGACAT+GGG | - | chr1_2:3413841-3413860 | Msa0049900:intron | 25.0% |
| ! | AAATCAAAGAAAAAGAAGCA+TGG | - | chr1_2:3413908-3413927 | Msa0049900:intron | 25.0% |
| ! | ATATTTATCCCTATATCTCT+TGG | + | chr1_2:3414369-3414388 | None:intergenic | 25.0% |
| ! | AATATACACGATATCACTTA+AGG | - | chr1_2:3414384-3414403 | Msa0049900:CDS | 25.0% |
| GAACAAACAAGTACACAAAA+TGG | - | chr1_2:3407950-3407969 | Msa0049900:intron | 30.0% | |
| ! | AATACTTCAGAAAGCATAAC+AGG | + | chr1_2:3408227-3408246 | None:intergenic | 30.0% |
| !! | TGTTATGCTTTCTGAAGTAT+TGG | - | chr1_2:3408226-3408245 | Msa0049900:three_prime_UTR | 30.0% |
| GAAAGAAGTTAAGGAAGAAT+TGG | + | chr1_2:3408261-3408280 | None:intergenic | 30.0% | |
| ACAATCAACGAAAGAAGTTA+AGG | + | chr1_2:3408270-3408289 | None:intergenic | 30.0% | |
| ATGATAGAAACTAACATTGG+TGG | + | chr1_2:3408315-3408334 | None:intergenic | 30.0% | |
| AATGTGAATGCATAGAACAT+AGG | + | chr1_2:3408690-3408709 | None:intergenic | 30.0% | |
| TAATCAGATTTCACCATCTT+TGG | + | chr1_2:3408750-3408769 | None:intergenic | 30.0% | |
| !!! | CTTTTAAAGTCAAATCCATC+TGG | - | chr1_2:3408833-3408852 | Msa0049900:intron | 30.0% |
| GTGTGATTCAATTTCTTGAA+AGG | + | chr1_2:3409037-3409056 | None:intergenic | 30.0% | |
| !! | TGAAAGTGTTTACTGTGTTA+AGG | - | chr1_2:3409338-3409357 | Msa0049900:intron | 30.0% |
| ! | TGCTATTTAAAACCATGAGT+AGG | + | chr1_2:3409522-3409541 | None:intergenic | 30.0% |
| TTTGTTTAATCTTATGGTGC+TGG | - | chr1_2:3409657-3409676 | Msa0049900:intron | 30.0% | |
| ! | CAATTTTCTGATCGATTACT+AGG | - | chr1_2:3409929-3409948 | Msa0049900:intron | 30.0% |
| ! | TTACTAGGAGTAAAAAGTGT+TGG | - | chr1_2:3409944-3409963 | Msa0049900:intron | 30.0% |
| GTTAATGTTGTAGCATTGTA+TGG | - | chr1_2:3409973-3409992 | Msa0049900:intron | 30.0% | |
| GAAATAGCAATACATGTCTT+CGG | + | chr1_2:3410047-3410066 | None:intergenic | 30.0% | |
| AATGTAATCCACCTTCTAAA+CGG | + | chr1_2:3410425-3410444 | None:intergenic | 30.0% | |
| GAAAATGCAATAGACATTTG+TGG | + | chr1_2:3410686-3410705 | None:intergenic | 30.0% | |
| TCCTAATGAAAATTCCTACT+TGG | - | chr1_2:3410706-3410725 | Msa0049900:intron | 30.0% | |
| ! | ACCAAGTAGGAATTTTCATT+AGG | + | chr1_2:3410710-3410729 | None:intergenic | 30.0% |
| !! | TTAAGTGGGCTTTGAAATTT+GGG | + | chr1_2:3410759-3410778 | None:intergenic | 30.0% |
| !! | TTTAAGTGGGCTTTGAAATT+TGG | + | chr1_2:3410760-3410779 | None:intergenic | 30.0% |
| !! | TTTAATTTAGTGGGCTTAGT+GGG | + | chr1_2:3410789-3410808 | None:intergenic | 30.0% |
| !!! | AATAGATTTTATAGTGGGCT+TGG | + | chr1_2:3410841-3410860 | None:intergenic | 30.0% |
| TGTTGCAATTTGAGTCAATA+TGG | + | chr1_2:3413122-3413141 | None:intergenic | 30.0% | |
| ! | TTTTGCATGATGTTACAGAT+AGG | - | chr1_2:3413172-3413191 | Msa0049900:intron | 30.0% |
| TTACAGATAGGTCTTTCAAA+GGG | - | chr1_2:3413184-3413203 | Msa0049900:intron | 30.0% | |
| !!! | AGGTATATTTCCTAGTTTTG+AGG | + | chr1_2:3413249-3413268 | None:intergenic | 30.0% |
| ! | AATTTGAGAAGTGTAGTAGT+TGG | - | chr1_2:3413308-3413327 | Msa0049900:intron | 30.0% |
| ! | TCAGACCACAAATTTTTACA+TGG | - | chr1_2:3413572-3413591 | Msa0049900:intron | 30.0% |
| GCTATCCATGTAAAAATTTG+TGG | + | chr1_2:3413580-3413599 | None:intergenic | 30.0% | |
| TGTTATATCCTTTCACAGTT+TGG | - | chr1_2:3413783-3413802 | Msa0049900:intron | 30.0% | |
| AGAGTTGCAATAATGATCTT+AGG | - | chr1_2:3413872-3413891 | Msa0049900:intron | 30.0% | |
| AGAATAATTCCATTTGATCC+AGG | + | chr1_2:3413949-3413968 | None:intergenic | 30.0% | |
| AAGAAATGTCCAAGAGATAT+AGG | - | chr1_2:3414357-3414376 | Msa0049900:CDS | 30.0% | |
| AGAAATGTCCAAGAGATATA+GGG | - | chr1_2:3414358-3414377 | Msa0049900:CDS | 30.0% | |
| AGAATGTGGTGAATGAGTTT+AGG | + | chr1_2:3408032-3408051 | None:intergenic | 35.0% | |
| !! | GTTCTGAGATTTGAAGAAGA+AGG | + | chr1_2:3408059-3408078 | None:intergenic | 35.0% |
| ! | TTTCTTGGTCTTTGTGATTC+TGG | + | chr1_2:3408099-3408118 | None:intergenic | 35.0% |
| TTCTGATAAAGAACTCGACA+AGG | - | chr1_2:3408157-3408176 | Msa0049900:three_prime_UTR | 35.0% | |
| ! | TCTTTCGTTGATTGTACTCT+TGG | - | chr1_2:3408275-3408294 | Msa0049900:three_prime_UTR | 35.0% |
| CAAAACAAGCCTAATCCAAA+CGG | - | chr1_2:3408456-3408475 | Msa0049900:CDS | 35.0% | |
| AAAACAAGCCTAATCCAAAC+GGG | - | chr1_2:3408457-3408476 | Msa0049900:CDS | 35.0% | |
| TTTCAGCTAGGAATCAAACT+CGG | + | chr1_2:3408864-3408883 | None:intergenic | 35.0% | |
| TTCCTAGCTGAAACAATTCT+TGG | - | chr1_2:3408871-3408890 | Msa0049900:intron | 35.0% | |
| TTGGTTGAAGAGAAATAGAG+AGG | + | chr1_2:3409088-3409107 | None:intergenic | 35.0% | |
| TGAATGGAATAGGTGATTAG+AGG | - | chr1_2:3409211-3409230 | Msa0049900:intron | 35.0% | |
| !! | CAGAGCTGAAGTATTTTGTT+GGG | - | chr1_2:3409239-3409258 | Msa0049900:intron | 35.0% |
| ! | TGCTGAACTGCTATATTTTG+TGG | - | chr1_2:3409565-3409584 | Msa0049900:intron | 35.0% |
| AGGTAGACTTTAATGCGTTT+AGG | - | chr1_2:3409833-3409852 | Msa0049900:intron | 35.0% | |
| ! | ATTTAGACAGAAGCACAAGT+CGG | + | chr1_2:3410097-3410116 | None:intergenic | 35.0% |
| ! | TTCCTATTAAACTGATGGAC+AGG | - | chr1_2:3410270-3410289 | Msa0049900:intron | 35.0% |
| ATTATGGGGAAGAGAGTAAT+TGG | - | chr1_2:3410370-3410389 | Msa0049900:intron | 35.0% | |
| ATGTAATCCACCTTCTAAAC+GGG | + | chr1_2:3410424-3410443 | None:intergenic | 35.0% | |
| !!! | TGCAGGCTCTATTTTTTTCT+AGG | - | chr1_2:3410523-3410542 | Msa0049900:intron | 35.0% |
| !! | TAAGTGGGCTTTGAAATTTG+GGG | + | chr1_2:3410758-3410777 | None:intergenic | 35.0% |
| !! | TTAATTTAGTGGGCTTAGTG+GGG | + | chr1_2:3410788-3410807 | None:intergenic | 35.0% |
| !! | CTTTAATTTAGTGGGCTTAG+TGG | + | chr1_2:3410790-3410809 | None:intergenic | 35.0% |
| ! | TTAGGGGGCTTTAATTTAGT+GGG | + | chr1_2:3410798-3410817 | None:intergenic | 35.0% |
| ! | ATTAGGGGGCTTTAATTTAG+TGG | + | chr1_2:3410799-3410818 | None:intergenic | 35.0% |
| !!! | TTTATAGAAATTTTGGGGCC+TGG | - | chr1_2:3412800-3412819 | Msa0049900:intron | 35.0% |
| !!! | TTATAGAAATTTTGGGGCCT+GGG | - | chr1_2:3412801-3412820 | Msa0049900:intron | 35.0% |
| ! | TTTTAAGCCCCATTACTATG+TGG | - | chr1_2:3412883-3412902 | Msa0049900:intron | 35.0% |
| TTTAAGCCCCATTACTATGT+GGG | - | chr1_2:3412884-3412903 | Msa0049900:intron | 35.0% | |
| !! | TTAGAGGTGTCAATATCATG+GGG | + | chr1_2:3412930-3412949 | None:intergenic | 35.0% |
| !! | GTTAGAGGTGTCAATATCAT+GGG | + | chr1_2:3412931-3412950 | None:intergenic | 35.0% |
| !! | AGTTAGAGGTGTCAATATCA+TGG | + | chr1_2:3412932-3412951 | None:intergenic | 35.0% |
| !!! | TATTTTGGTCTTCGAGGATT+GGG | + | chr1_2:3412961-3412980 | None:intergenic | 35.0% |
| AAGACCAAAATACCCTAGTT+GGG | - | chr1_2:3412969-3412988 | Msa0049900:CDS | 35.0% | |
| TGGTTCAAACAAGAAACCTT+TGG | - | chr1_2:3413033-3413052 | Msa0049900:CDS | 35.0% | |
| TTCAAACAAGAAACCTTTGG+AGG | - | chr1_2:3413036-3413055 | Msa0049900:CDS | 35.0% | |
| GTTACAGATAGGTCTTTCAA+AGG | - | chr1_2:3413183-3413202 | Msa0049900:intron | 35.0% | |
| ! | TAAAGTATTTATGCAGGGTG+AGG | - | chr1_2:3413349-3413368 | Msa0049900:intron | 35.0% |
| ! | CAGAAAGCATATACAAGTAG+TGG | - | chr1_2:3413389-3413408 | Msa0049900:intron | 35.0% |
| ! | TTCTTGACTGACATTTTTGC+TGG | - | chr1_2:3413518-3413537 | Msa0049900:intron | 35.0% |
| CGAATTCATAACACAAGCTT+TGG | - | chr1_2:3413548-3413567 | Msa0049900:intron | 35.0% | |
| TTTGATTACACTGTAACAGG+TGG | - | chr1_2:3413628-3413647 | Msa0049900:intron | 35.0% | |
| TTCTCAATGCTTGAAATACC+CGG | + | chr1_2:3413681-3413700 | None:intergenic | 35.0% | |
| GCAGTCAAAACAAGAATAGA+GGG | + | chr1_2:3413740-3413759 | None:intergenic | 35.0% | |
| TATATCCTTTCACAGTTTGG+AGG | - | chr1_2:3413786-3413805 | Msa0049900:intron | 35.0% | |
| CTCATCAGTAGAAAAGTTCA+AGG | - | chr1_2:3414149-3414168 | Msa0049900:CDS | 35.0% | |
| ! | CTTTGAATGACTTGCACATA+CGG | - | chr1_2:3414438-3414457 | Msa0049900:five_prime_UTR | 35.0% |
| GTTACTACCACAGTGAGTTT+AGG | - | chr1_2:3407923-3407942 | Msa0049900:intron | 40.0% | |
| ! | GTGGTGAATGAGTTTAGGTT+TGG | + | chr1_2:3408027-3408046 | None:intergenic | 40.0% |
| AAGAAGAAGGAGAGAGAATG+TGG | + | chr1_2:3408046-3408065 | None:intergenic | 40.0% | |
| ! | CTTTGTGATTCTGGAAGAAG+CGG | + | chr1_2:3408090-3408109 | None:intergenic | 40.0% |
| AAATTCTCTTAGGTCCCGTT+TGG | + | chr1_2:3408474-3408493 | None:intergenic | 40.0% | |
| CATAGAACATAGGCCATGTT+TGG | + | chr1_2:3408680-3408699 | None:intergenic | 40.0% | |
| AGCCAAGAATTGTTTCAGCT+AGG | + | chr1_2:3408876-3408895 | None:intergenic | 40.0% | |
| TAGTAATTTGGGGATTGGGT+GGG | + | chr1_2:3408915-3408934 | None:intergenic | 40.0% | |
| ACCCAATCCCCAAATTACTA+GGG | - | chr1_2:3408915-3408934 | Msa0049900:intron | 40.0% | |
| CCAACAAAATACTTCAGCTC+TGG | + | chr1_2:3409241-3409260 | None:intergenic | 40.0% | |
| !! | CCAGAGCTGAAGTATTTTGT+TGG | - | chr1_2:3409238-3409257 | Msa0049900:intron | 40.0% |
| !! | GCTGAAGTATTTTGTTGGGA+TGG | - | chr1_2:3409243-3409262 | Msa0049900:intron | 40.0% |
| ! | GTATTTTGTTGGGATGGATG+TGG | - | chr1_2:3409249-3409268 | Msa0049900:intron | 40.0% |
| !!! | TCAGTTCAGTTTTGGACGAT+AGG | - | chr1_2:3409305-3409324 | Msa0049900:intron | 40.0% |
| !!! | CAGTTCAGTTTTGGACGATA+GGG | - | chr1_2:3409306-3409325 | Msa0049900:intron | 40.0% |
| CACATCAAATCTGTGCTTAG+AGG | - | chr1_2:3409370-3409389 | Msa0049900:intron | 40.0% | |
| CAAATCTGTGCTTAGAGGAA+CGG | - | chr1_2:3409375-3409394 | Msa0049900:intron | 40.0% | |
| AAATCTGTGCTTAGAGGAAC+GGG | - | chr1_2:3409376-3409395 | Msa0049900:intron | 40.0% | |
| ! | GTCTATTGATGGCATCTTGA+TGG | - | chr1_2:3409420-3409439 | Msa0049900:intron | 40.0% |
| AACGCATTAAAGTCTACCTG+AGG | + | chr1_2:3409832-3409851 | None:intergenic | 40.0% | |
| TAGCAATACATGTCTTCGGT+TGG | + | chr1_2:3410043-3410062 | None:intergenic | 40.0% | |
| ! | TTTAGACAGAAGCACAAGTC+GGG | + | chr1_2:3410096-3410115 | None:intergenic | 40.0% |
| TGTATTACTCTGCAGTAAGC+AGG | + | chr1_2:3410240-3410259 | None:intergenic | 40.0% | |
| TGACTCCTGGAATGAAAAGT+AGG | - | chr1_2:3410478-3410497 | Msa0049900:intron | 40.0% | |
| CTGCAATAGAAAACTGGAGA+AGG | + | chr1_2:3410508-3410527 | None:intergenic | 40.0% | |
| ! | CTTCTCCAGTTTTCTATTGC+AGG | - | chr1_2:3410506-3410525 | Msa0049900:intron | 40.0% |
| TAGAGCCTGCAATAGAAAAC+TGG | + | chr1_2:3410514-3410533 | None:intergenic | 40.0% | |
| TGACTGTGAAGGGAAAGTTA+CGG | + | chr1_2:3410647-3410666 | None:intergenic | 40.0% | |
| GAGTGGAATTTGACTGTGAA+GGG | + | chr1_2:3410657-3410676 | None:intergenic | 40.0% | |
| TGAGTGGAATTTGACTGTGA+AGG | + | chr1_2:3410658-3410677 | None:intergenic | 40.0% | |
| GACATTTGTGGAATCTTGAG+TGG | + | chr1_2:3410674-3410693 | None:intergenic | 40.0% | |
| CTCTAGCAATAGTACCAAGT+AGG | + | chr1_2:3410723-3410742 | None:intergenic | 40.0% | |
| CTACTTGGTACTATTGCTAG+AGG | - | chr1_2:3410721-3410740 | Msa0049900:intron | 40.0% | |
| !!! | TAGTGGGGGCTTTTTTAAGT+GGG | + | chr1_2:3410773-3410792 | None:intergenic | 40.0% |
| !!! | TTAGTGGGGGCTTTTTTAAG+TGG | + | chr1_2:3410774-3410793 | None:intergenic | 40.0% |
| !! | TAATTTAGTGGGCTTAGTGG+GGG | + | chr1_2:3410787-3410806 | None:intergenic | 40.0% |
| !!! | TATAGAAATTTTGGGGCCTG+GGG | - | chr1_2:3412802-3412821 | Msa0049900:intron | 40.0% |
| !!! | CTTGAGGGCTTTTGATTTGT+GGG | - | chr1_2:3412826-3412845 | Msa0049900:intron | 40.0% |
| ! | ATGTGGGCCTTTTAATCTTG+TGG | - | chr1_2:3412858-3412877 | Msa0049900:intron | 40.0% |
| !! | ATTTTGGTCTTCGAGGATTG+GGG | + | chr1_2:3412960-3412979 | None:intergenic | 40.0% |
| !!! | GTATTTTGGTCTTCGAGGAT+TGG | + | chr1_2:3412962-3412981 | None:intergenic | 40.0% |
| GAAGACCAAAATACCCTAGT+TGG | - | chr1_2:3412968-3412987 | Msa0049900:CDS | 40.0% | |
| TATGCACTATGATGCATCAG+AGG | - | chr1_2:3413149-3413168 | Msa0049900:intron | 40.0% | |
| GATCTTCAGTCCTCAAAACT+AGG | - | chr1_2:3413236-3413255 | Msa0049900:intron | 40.0% | |
| ATTACACTGTAACAGGTGGA+AGG | - | chr1_2:3413632-3413651 | Msa0049900:intron | 40.0% | |
| TCTCAATGCTTGAAATACCC+GGG | + | chr1_2:3413680-3413699 | None:intergenic | 40.0% | |
| TGATGAACTGAAGACTCTTG+AGG | - | chr1_2:3413711-3413730 | Msa0049900:intron | 40.0% | |
| GGCAGTCAAAACAAGAATAG+AGG | + | chr1_2:3413741-3413760 | None:intergenic | 40.0% | |
| GAAATGAAGACATGGGAGAA+GGG | - | chr1_2:3413848-3413867 | Msa0049900:intron | 40.0% | |
| AAATGAAGACATGGGAGAAG+GGG | - | chr1_2:3413849-3413868 | Msa0049900:intron | 40.0% | |
| TGGATAAGACAAGTAATGCC+TGG | - | chr1_2:3413928-3413947 | Msa0049900:intron | 40.0% | |
| CAAGTAATGCCTGGATCAAA+TGG | - | chr1_2:3413937-3413956 | Msa0049900:intron | 40.0% | |
| ! | TCTTCTTCTGATGGCGTAAT+TGG | + | chr1_2:3413982-3414001 | None:intergenic | 40.0% |
| AATTACGCCATCAGAAGAAG+AGG | - | chr1_2:3413981-3414000 | Msa0049900:intron | 40.0% | |
| AAGTTCTCCTCTTCTTCTGA+TGG | + | chr1_2:3413991-3414010 | None:intergenic | 40.0% | |
| ! | AAGTAGAAGTGCAAAGCTCA+GGG | - | chr1_2:3414020-3414039 | Msa0049900:intron | 40.0% |
| TACCACAGTGAGTTTAGGTC+TGG | - | chr1_2:3407928-3407947 | Msa0049900:intron | 45.0% | |
| TTCCAGACCTAAACTCACTG+TGG | + | chr1_2:3407933-3407952 | None:intergenic | 45.0% | |
| !!! | AAGTGCTGCTTCGGTTTTCT+TGG | + | chr1_2:3408114-3408133 | None:intergenic | 45.0% |
| ! | ACGCGTTCTTCTCTTTTCCT+TGG | + | chr1_2:3408138-3408157 | None:intergenic | 45.0% |
| TCTTAGGTCCCGTTTGGATT+AGG | + | chr1_2:3408468-3408487 | None:intergenic | 45.0% | |
| TCAAACTCGGATACTCCAGA+TGG | + | chr1_2:3408851-3408870 | None:intergenic | 45.0% | |
| AGTAATTTGGGGATTGGGTG+GGG | + | chr1_2:3408914-3408933 | None:intergenic | 45.0% | |
| CTAGTAATTTGGGGATTGGG+TGG | + | chr1_2:3408916-3408935 | None:intergenic | 45.0% | |
| CACCCAATCCCCAAATTACT+AGG | - | chr1_2:3408914-3408933 | Msa0049900:intron | 45.0% | |
| CCCCTAGTAATTTGGGGATT+GGG | + | chr1_2:3408919-3408938 | None:intergenic | 45.0% | |
| CCCAATCCCCAAATTACTAG+GGG | - | chr1_2:3408916-3408935 | Msa0049900:intron | 45.0% | |
| ! | ATCCCGCATCAGTTCAGTTT+TGG | - | chr1_2:3409297-3409316 | Msa0049900:intron | 45.0% |
| GTCCAAAACTGAACTGATGC+GGG | + | chr1_2:3409302-3409321 | None:intergenic | 45.0% | |
| CGTCCAAAACTGAACTGATG+CGG | + | chr1_2:3409303-3409322 | None:intergenic | 45.0% | |
| TTAGGGGATGCGTCTATTGA+TGG | - | chr1_2:3409409-3409428 | Msa0049900:intron | 45.0% | |
| CTTGTGTTGTGTCCTACTCA+TGG | - | chr1_2:3409507-3409526 | Msa0049900:intron | 45.0% | |
| TAGGTGGATGATCCTCAAAG+AGG | - | chr1_2:3409763-3409782 | Msa0049900:intron | 45.0% | |
| AGCACACTGAATCCTCTTTG+AGG | + | chr1_2:3409778-3409797 | None:intergenic | 45.0% | |
| CAAAGAGGATTCAGTGTGCT+TGG | - | chr1_2:3409778-3409797 | Msa0049900:intron | 45.0% | |
| TACATGTCTTCGGTTGGAGT+TGG | + | chr1_2:3410037-3410056 | None:intergenic | 45.0% | |
| GGCCTGTCCATCAGTTTAAT+AGG | + | chr1_2:3410275-3410294 | None:intergenic | 45.0% | |
| !! | CTTTAAGGCTTGCCTGTCAT+AGG | + | chr1_2:3410296-3410315 | None:intergenic | 45.0% |
| TTCTTGGCCAGATACTGAAG+TGG | - | chr1_2:3410332-3410351 | Msa0049900:intron | 45.0% | |
| TCTTGGCCAGATACTGAAGT+GGG | - | chr1_2:3410333-3410352 | Msa0049900:intron | 45.0% | |
| GCCGTATCCTAAGGGATTAT+GGG | - | chr1_2:3410355-3410374 | Msa0049900:intron | 45.0% | |
| CCCCATAATCCCTTAGGATA+CGG | + | chr1_2:3410359-3410378 | None:intergenic | 45.0% | |
| CCGTATCCTAAGGGATTATG+GGG | - | chr1_2:3410356-3410375 | Msa0049900:intron | 45.0% | |
| TCTCTTCCCCATAATCCCTT+AGG | + | chr1_2:3410365-3410384 | None:intergenic | 45.0% | |
| ATTGTCCAAGCCCGTTTAGA+AGG | - | chr1_2:3410411-3410430 | Msa0049900:intron | 45.0% | |
| CTGAATGAGATCCAGCAAGT+CGG | + | chr1_2:3410454-3410473 | None:intergenic | 45.0% | |
| !! | GACGACCTACTTTTCATTCC+AGG | + | chr1_2:3410486-3410505 | None:intergenic | 45.0% |
| CCACAAATCAAAAGCCCTCA+AGG | + | chr1_2:3412828-3412847 | None:intergenic | 45.0% | |
| !!! | CCTTGAGGGCTTTTGATTTG+TGG | - | chr1_2:3412825-3412844 | Msa0049900:intron | 45.0% |
| TTTGTGGGCTTGCATGAATG+TGG | - | chr1_2:3412841-3412860 | Msa0049900:intron | 45.0% | |
| TTGTGGGCTTGCATGAATGT+GGG | - | chr1_2:3412842-3412861 | Msa0049900:intron | 45.0% | |
| ! | ATCATGGGGCCTTGAAGTTT+TGG | + | chr1_2:3412916-3412935 | None:intergenic | 45.0% |
| !! | TTTTGGTCTTCGAGGATTGG+GGG | + | chr1_2:3412959-3412978 | None:intergenic | 45.0% |
| !!! | CTAGGGTATTTTGGTCTTCG+AGG | + | chr1_2:3412967-3412986 | None:intergenic | 45.0% |
| !! | GAAGCCCAACTAGGGTATTT+TGG | + | chr1_2:3412976-3412995 | None:intergenic | 45.0% |
| TCATAGCAGAAGCCCAACTA+GGG | + | chr1_2:3412984-3413003 | None:intergenic | 45.0% | |
| !! | AGAAGAGTGTCTTCCTCCAA+AGG | + | chr1_2:3413052-3413071 | None:intergenic | 45.0% |
| GTTGGATAAAGACAGCAACC+CGG | - | chr1_2:3413659-3413678 | Msa0049900:intron | 45.0% | |
| TTGGATAAAGACAGCAACCC+GGG | - | chr1_2:3413660-3413679 | Msa0049900:intron | 45.0% | |
| TCTGTCCTCCAAACTGTGAA+AGG | + | chr1_2:3413794-3413813 | None:intergenic | 45.0% | |
| GGAAATGAAGACATGGGAGA+AGG | - | chr1_2:3413847-3413866 | Msa0049900:intron | 45.0% | |
| GCTTTGCACTTCTACTTCTG+CGG | + | chr1_2:3414017-3414036 | None:intergenic | 45.0% | |
| ! | GAAGTAGAAGTGCAAAGCTC+AGG | - | chr1_2:3414019-3414038 | Msa0049900:intron | 45.0% |
| !! | TAAGAAAAAAATTATAATAT+GGG | + | chr1_2:3410885-3410904 | None:intergenic | 5.0% |
| !! | TTAAGAAAAAAATTATAATA+TGG | + | chr1_2:3410886-3410905 | None:intergenic | 5.0% |
| !!! | GTTATTTTTTAAAATTAAAT+CGG | + | chr1_2:3411493-3411512 | None:intergenic | 5.0% |
| !!! | GTTATTTTTTAAAATTAAAT+CGG | + | chr1_2:3411493-3411512 | None:intergenic | 5.0% |
| !!! | GTTATTTTTTAAAATTAAAT+CGG | + | chr1_2:3411493-3411512 | None:intergenic | 5.0% |
| ! | TGTGATTCTGGAAGAAGCGG+TGG | + | chr1_2:3408087-3408106 | None:intergenic | 50.0% |
| !! | TTCCTTGGCAAGTGCTGCTT+CGG | + | chr1_2:3408123-3408142 | None:intergenic | 50.0% |
| !! | GATTGTACTCTTGGTGCTGC+TGG | - | chr1_2:3408284-3408303 | Msa0049900:three_prime_UTR | 50.0% |
| GCCCCTAGTAATTTGGGGAT+TGG | + | chr1_2:3408920-3408939 | None:intergenic | 50.0% | |
| TCGAGGGCCCCTAGTAATTT+GGG | + | chr1_2:3408926-3408945 | None:intergenic | 50.0% | |
| TTCGAGGGCCCCTAGTAATT+TGG | + | chr1_2:3408927-3408946 | None:intergenic | 50.0% | |
| TCTTAATCCCCCAGCTTCGA+GGG | + | chr1_2:3408942-3408961 | None:intergenic | 50.0% | |
| ! | TGATGGCATCTTGATGGACC+TGG | - | chr1_2:3409426-3409445 | Msa0049900:intron | 50.0% |
| ! | GATGGCATCTTGATGGACCT+GGG | - | chr1_2:3409427-3409446 | Msa0049900:intron | 50.0% |
| ! | GGATTCAGTGTGCTTGGTGA+TGG | - | chr1_2:3409784-3409803 | Msa0049900:intron | 50.0% |
| TGGACCACTTGATATGCGCA+TGG | - | chr1_2:3409804-3409823 | Msa0049900:intron | 50.0% | |
| GGATCCATGCGCATATCAAG+TGG | + | chr1_2:3409811-3409830 | None:intergenic | 50.0% | |
| TGATATGCGCATGGATCCTC+AGG | - | chr1_2:3409813-3409832 | Msa0049900:intron | 50.0% | |
| ATACGGCCCACTTCAGTATC+TGG | + | chr1_2:3410342-3410361 | None:intergenic | 50.0% | |
| TGAAGTGGGCCGTATCCTAA+GGG | - | chr1_2:3410347-3410366 | Msa0049900:intron | 50.0% | |
| GGCCGTATCCTAAGGGATTA+TGG | - | chr1_2:3410354-3410373 | Msa0049900:intron | 50.0% | |
| ! | ATCCACCTTCTAAACGGGCT+TGG | + | chr1_2:3410419-3410438 | None:intergenic | 50.0% |
| !! | ACATTCCACTACCGACTTGC+TGG | - | chr1_2:3410440-3410459 | Msa0049900:intron | 50.0% |
| AAGGGAAAGTTACGGTGGAG+GGG | + | chr1_2:3410639-3410658 | None:intergenic | 50.0% | |
| GAAGGGAAAGTTACGGTGGA+GGG | + | chr1_2:3410640-3410659 | None:intergenic | 50.0% | |
| TGAAGGGAAAGTTACGGTGG+AGG | + | chr1_2:3410641-3410660 | None:intergenic | 50.0% | |
| CTGTGAAGGGAAAGTTACGG+TGG | + | chr1_2:3410644-3410663 | None:intergenic | 50.0% | |
| GGATTGGGGGCAATAGTTAG+AGG | + | chr1_2:3412946-3412965 | None:intergenic | 50.0% | |
| GTCATAGCAGAAGCCCAACT+AGG | + | chr1_2:3412985-3413004 | None:intergenic | 50.0% | |
| ACTGTAACAGGTGGAAGGCA+AGG | - | chr1_2:3413637-3413656 | Msa0049900:intron | 50.0% | |
| TAACAGGTGGAAGGCAAGGT+TGG | - | chr1_2:3413641-3413660 | Msa0049900:intron | 50.0% | |
| !!! | TGTTTTGACTGCCTTGCACC+TGG | - | chr1_2:3413748-3413767 | Msa0049900:intron | 50.0% |
| !!! | GTTTTGACTGCCTTGCACCT+GGG | - | chr1_2:3413749-3413768 | Msa0049900:intron | 50.0% |
| !! | TTTTGACTGCCTTGCACCTG+GGG | - | chr1_2:3413750-3413769 | Msa0049900:intron | 50.0% |
| TCTGGAAGAAGCGGTGGTGA+GGG | + | chr1_2:3408081-3408100 | None:intergenic | 55.0% | |
| ! | TTCTGGAAGAAGCGGTGGTG+AGG | + | chr1_2:3408082-3408101 | None:intergenic | 55.0% |
| AACCGAAGCAGCACTTGCCA+AGG | - | chr1_2:3408118-3408137 | Msa0049900:three_prime_UTR | 55.0% | |
| CGAGGGCCCCTAGTAATTTG+GGG | + | chr1_2:3408925-3408944 | None:intergenic | 55.0% | |
| GTCTTAATCCCCCAGCTTCG+AGG | + | chr1_2:3408943-3408962 | None:intergenic | 55.0% | |
| TGTGCTTAGAGGAACGGGAG+AGG | - | chr1_2:3409381-3409400 | Msa0049900:intron | 55.0% | |
| !! | GAACGGGAGAGGAGCACTTA+GGG | - | chr1_2:3409392-3409411 | Msa0049900:intron | 55.0% |
| !! | AACGGGAGAGGAGCACTTAG+GGG | - | chr1_2:3409393-3409412 | Msa0049900:intron | 55.0% |
| CCTGCATAGATGACATGCCC+AGG | + | chr1_2:3409447-3409466 | None:intergenic | 55.0% | |
| CCTGGGCATGTCATCTATGC+AGG | - | chr1_2:3409444-3409463 | Msa0049900:intron | 55.0% | |
| ! | CTGATGGACAGGCCTATGAC+AGG | - | chr1_2:3410281-3410300 | Msa0049900:intron | 55.0% |
| CTGAAGTGGGCCGTATCCTA+AGG | - | chr1_2:3410346-3410365 | Msa0049900:intron | 55.0% | |
| GTCCAAGCCCGTTTAGAAGG+TGG | - | chr1_2:3410414-3410433 | Msa0049900:intron | 55.0% | |
| GAGATCCAGCAAGTCGGTAG+TGG | + | chr1_2:3410448-3410467 | None:intergenic | 55.0% | |
| CTCATTCAGCGTGTGACTCC+TGG | - | chr1_2:3410465-3410484 | Msa0049900:intron | 55.0% | |
| AGGGAAAGTTACGGTGGAGG+GGG | + | chr1_2:3410638-3410657 | None:intergenic | 55.0% | |
| AGCCCCATTACTATGTGGGC+TGG | - | chr1_2:3412888-3412907 | Msa0049900:intron | 55.0% | |
| GCCCCATTACTATGTGGGCT+GGG | - | chr1_2:3412889-3412908 | Msa0049900:intron | 55.0% | |
| CCCCAGCCCACATAGTAATG+GGG | + | chr1_2:3412893-3412912 | None:intergenic | 55.0% | |
| ! | CCCCATTACTATGTGGGCTG+GGG | - | chr1_2:3412890-3412909 | Msa0049900:intron | 55.0% |
| GCCCCAGCCCACATAGTAAT+GGG | + | chr1_2:3412894-3412913 | None:intergenic | 55.0% | |
| TTTGACTGCCTTGCACCTGG+GGG | - | chr1_2:3413751-3413770 | Msa0049900:intron | 55.0% | |
| ATAACAGCAAGCCTACCCCC+AGG | + | chr1_2:3413769-3413788 | None:intergenic | 55.0% | |
| TTACTAGGGGCCCTCGAAGC+TGG | - | chr1_2:3408929-3408948 | Msa0049900:intron | 60.0% | |
| TACTAGGGGCCCTCGAAGCT+GGG | - | chr1_2:3408930-3408949 | Msa0049900:intron | 60.0% | |
| TGGGATGGATGTGGACCCTG+TGG | - | chr1_2:3409258-3409277 | Msa0049900:intron | 60.0% | |
| GGGATGGATGTGGACCCTGT+GGG | - | chr1_2:3409259-3409278 | Msa0049900:intron | 60.0% | |
| GGATGGATGTGGACCCTGTG+GGG | - | chr1_2:3409260-3409279 | Msa0049900:intron | 60.0% | |
| !! | GGAACGGGAGAGGAGCACTT+AGG | - | chr1_2:3409391-3409410 | Msa0049900:intron | 60.0% |
| TCAAAAGCCCTCAAGGCCCC+AGG | + | chr1_2:3412821-3412840 | None:intergenic | 60.0% | |
| GGCCCCAGCCCACATAGTAA+TGG | + | chr1_2:3412895-3412914 | None:intergenic | 60.0% | |
| GGGCTGGGGCCAAAACTTCA+AGG | - | chr1_2:3412904-3412923 | Msa0049900:intron | 60.0% | |
| ACTAGGGGCCCTCGAAGCTG+GGG | - | chr1_2:3408931-3408950 | Msa0049900:intron | 65.0% | |
| GGACCCTGTGGGGAGTGACA+CGG | - | chr1_2:3409270-3409289 | Msa0049900:intron | 65.0% | |
| ! | GAGCCGTGTCACTCCCCACA+GGG | + | chr1_2:3409276-3409295 | None:intergenic | 65.0% |
| ! | TGAGCCGTGTCACTCCCCAC+AGG | + | chr1_2:3409277-3409296 | None:intergenic | 65.0% |
| !!! | TTTTGGGGCCTGGGGCCTTG+AGG | - | chr1_2:3412810-3412829 | Msa0049900:intron | 65.0% |
| ! | TTTGGGGCCTGGGGCCTTGA+GGG | - | chr1_2:3412811-3412830 | Msa0049900:intron | 65.0% |
| ACTGCCTTGCACCTGGGGGT+AGG | - | chr1_2:3413755-3413774 | Msa0049900:intron | 65.0% | |
| CAAGCCTACCCCCAGGTGCA+AGG | + | chr1_2:3413762-3413781 | None:intergenic | 65.0% | |
| CTAGGGGCCCTCGAAGCTGG+GGG | - | chr1_2:3408932-3408951 | Msa0049900:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 3407894 | 3414491 | 3407894 | ID=Msa0049900;Name=Msa0049900 |
| chr1_2 | mRNA | 3407894 | 3414491 | 3407894 | ID=Msa0049900-mRNA-1;Parent=Msa0049900;Name=Msa0049900-mRNA-1;_AED=0.05;_eAED=0.05;_QI=75|1|1|1|0.8|0.66|6|275|422 |
| chr1_2 | exon | 3407894 | 3407930 | 3407894 | ID=Msa0049900-mRNA-1:exon:851;Parent=Msa0049900-mRNA-1 |
| chr1_2 | exon | 3408088 | 3408738 | 3408088 | ID=Msa0049900-mRNA-1:exon:850;Parent=Msa0049900-mRNA-1 |
| chr1_2 | exon | 3411890 | 3412082 | 3411890 | ID=Msa0049900-mRNA-1:exon:849;Parent=Msa0049900-mRNA-1 |
| chr1_2 | exon | 3412551 | 3412619 | 3412551 | ID=Msa0049900-mRNA-1:exon:848;Parent=Msa0049900-mRNA-1 |
| chr1_2 | exon | 3412920 | 3413162 | 3412920 | ID=Msa0049900-mRNA-1:exon:847;Parent=Msa0049900-mRNA-1 |
| chr1_2 | exon | 3414066 | 3414491 | 3414066 | ID=Msa0049900-mRNA-1:exon:846;Parent=Msa0049900-mRNA-1 |
| chr1_2 | five_prime_UTR | 3414417 | 3414491 | 3414417 | ID=Msa0049900-mRNA-1:five_prime_utr;Parent=Msa0049900-mRNA-1 |
| chr1_2 | CDS | 3414066 | 3414416 | 3414066 | ID=Msa0049900-mRNA-1:cds;Parent=Msa0049900-mRNA-1 |
| chr1_2 | CDS | 3412920 | 3413162 | 3412920 | ID=Msa0049900-mRNA-1:cds;Parent=Msa0049900-mRNA-1 |
| chr1_2 | CDS | 3412551 | 3412619 | 3412551 | ID=Msa0049900-mRNA-1:cds;Parent=Msa0049900-mRNA-1 |
| chr1_2 | CDS | 3411890 | 3412082 | 3411890 | ID=Msa0049900-mRNA-1:cds;Parent=Msa0049900-mRNA-1 |
| chr1_2 | CDS | 3408326 | 3408738 | 3408326 | ID=Msa0049900-mRNA-1:cds;Parent=Msa0049900-mRNA-1 |
| chr1_2 | three_prime_UTR | 3408088 | 3408325 | 3408088 | ID=Msa0049900-mRNA-1:three_prime_utr;Parent=Msa0049900-mRNA-1 |
| chr1_2 | three_prime_UTR | 3407894 | 3407930 | 3407894 | ID=Msa0049900-mRNA-1:three_prime_utr;Parent=Msa0049900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
