Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388840 | XP_013465755.1 | 95.972 | 422 | 12 | 2 | 1 | 422 | 1 | 417 | 0.0 | 821 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388840 | sp|Q6MEG4|RSMH_PARUW | 40.058 | 342 | 171 | 5 | 82 | 422 | 6 | 314 | 2.90e-75 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388840 | A0A072VDX8 | 95.972 | 422 | 12 | 2 | 1 | 422 | 1 | 417 | 0.0 | 821 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0049900 | Msa1388840 | 0.935537 | 7.255776e-97 | -8.615850e-47 |
| Msa0056050 | Msa1388840 | 0.926288 | 5.763934e-91 | -8.615850e-47 |
| Msa0164540 | Msa1388840 | 0.809082 | 2.255476e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388840 | MtrunA17_Chr1g0148351 | 95.972 | 422 | 12 | 2 | 1 | 422 | 1 | 417 | 0.0 | 821 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388840 | AT5G10910.1 | 63.130 | 377 | 126 | 5 | 51 | 422 | 66 | 434 | 1.63e-152 | 439 |
Find 110 sgRNAs with CRISPR-Local
Find 340 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATATGTCTTCTGCTTTA+AGG | 0.094672 | tig0021196:-63436 | None:intergenic |
| ACATTTCTTAATATAATTAA+AGG | 0.204441 | tig0021196:+66954 | Msa1388840:CDS |
| CAGAAGACATATTAAATTCT+TGG | 0.206992 | tig0021196:+63444 | Msa1388840:CDS |
| TTTCTTGGTCTTTGTGATTC+TGG | 0.209292 | tig0021196:-61223 | None:intergenic |
| GAACAAACAAGTACACAAAA+TGG | 0.249164 | tig0021196:+61077 | Msa1388840:exon |
| TCTTCTTCTGATGGCGTAAT+TGG | 0.258841 | tig0021196:-67107 | None:intergenic |
| GGCCGTATCCTAAGGGATTA+TGG | 0.262340 | tig0021196:+63482 | Msa1388840:CDS |
| ATCCCGCATCAGTTCAGTTT+TGG | 0.280708 | tig0021196:+62425 | Msa1388840:CDS |
| TGTTATATCCTTTCACAGTT+TGG | 0.342262 | tig0021196:+66911 | Msa1388840:CDS |
| ACATTCCACTACCGACTTGC+TGG | 0.344512 | tig0021196:+63568 | Msa1388840:CDS |
| TTCCTTGGCAAGTGCTGCTT+CGG | 0.352948 | tig0021196:-61247 | None:intergenic |
| CTCATTCAGCGTGTGACTCC+TGG | 0.359723 | tig0021196:+63593 | Msa1388840:CDS |
| AGAATGTGGTGAATGAGTTT+AGG | 0.363731 | tig0021196:-61156 | None:intergenic |
| GTTACTACCACAGTGAGTTT+AGG | 0.366864 | tig0021196:+61050 | Msa1388840:five_prime_UTR |
| CACATCAAATCTGTGCTTAG+AGG | 0.369280 | tig0021196:+62498 | Msa1388840:CDS |
| ATTATGGGGAAGAGAGTAAT+TGG | 0.369556 | tig0021196:+63498 | Msa1388840:CDS |
| GAAAGAAGTTAAGGAAGAAT+TGG | 0.378340 | tig0021196:-61385 | None:intergenic |
| TCTTTCGTTGATTGTACTCT+TGG | 0.378918 | tig0021196:+61402 | Msa1388840:CDS |
| AGAGTTGCAATAATGATCTT+AGG | 0.381830 | tig0021196:+67000 | Msa1388840:CDS |
| TGTTATGCTTTCTGAAGTAT+TGG | 0.385927 | tig0021196:+61353 | Msa1388840:CDS |
| ATACGGCCCACTTCAGTATC+TGG | 0.387830 | tig0021196:-63467 | None:intergenic |
| AATACTTCAGAAAGCATAAC+AGG | 0.389337 | tig0021196:-61351 | None:intergenic |
| GAACGGGAGAGGAGCACTTA+GGG | 0.398110 | tig0021196:+62520 | Msa1388840:CDS |
| CAAGTAATGCCTGGATCAAA+TGG | 0.400903 | tig0021196:+67065 | Msa1388840:CDS |
| GAAGTAGAAGTGCAAAGCTC+AGG | 0.404929 | tig0021196:+67147 | Msa1388840:CDS |
| CTCATCAGTAGAAAAGTTCA+AGG | 0.414662 | tig0021196:+67277 | Msa1388840:three_prime_UTR |
| TTAGGGGATGCGTCTATTGA+TGG | 0.431436 | tig0021196:+62537 | Msa1388840:CDS |
| GTTCTGAGATTTGAAGAAGA+AGG | 0.436928 | tig0021196:-61183 | None:intergenic |
| TGAAAGTGTTTACTGTGTTA+AGG | 0.437606 | tig0021196:+62466 | Msa1388840:CDS |
| AAGTTCTCCTCTTCTTCTGA+TGG | 0.438853 | tig0021196:-67116 | None:intergenic |
| AAATCTGTGCTTAGAGGAAC+GGG | 0.439542 | tig0021196:+62504 | Msa1388840:CDS |
| GATTGTACTCTTGGTGCTGC+TGG | 0.441916 | tig0021196:+61411 | Msa1388840:CDS |
| ACAATCAACGAAAGAAGTTA+AGG | 0.442987 | tig0021196:-61394 | None:intergenic |
| GCCGTATCCTAAGGGATTAT+GGG | 0.446424 | tig0021196:+63483 | Msa1388840:CDS |
| TACCACAGTGAGTTTAGGTC+TGG | 0.451776 | tig0021196:+61055 | Msa1388840:five_prime_UTR |
| ATGTAATCCACCTTCTAAAC+GGG | 0.452823 | tig0021196:-63549 | None:intergenic |
| GTGGTGAATGAGTTTAGGTT+TGG | 0.453543 | tig0021196:-61151 | None:intergenic |
| TGAATGGAATAGGTGATTAG+AGG | 0.456208 | tig0021196:+62339 | Msa1388840:intron |
| GGCAGTCAAAACAAGAATAG+AGG | 0.456791 | tig0021196:-66866 | None:intergenic |
| TGATGGCATCTTGATGGACC+TGG | 0.458496 | tig0021196:+62554 | Msa1388840:CDS |
| TCTCTTCCCCATAATCCCTT+AGG | 0.460827 | tig0021196:-63490 | None:intergenic |
| GAAATGAAGACATGGGAGAA+GGG | 0.463988 | tig0021196:+66976 | Msa1388840:CDS |
| ATTGTCCAAGCCCGTTTAGA+AGG | 0.466264 | tig0021196:+63539 | Msa1388840:CDS |
| AATGTAATCCACCTTCTAAA+CGG | 0.467914 | tig0021196:-63550 | None:intergenic |
| GGAACGGGAGAGGAGCACTT+AGG | 0.470617 | tig0021196:+62519 | Msa1388840:CDS |
| CTGAAGTGGGCCGTATCCTA+AGG | 0.471585 | tig0021196:+63474 | Msa1388840:CDS |
| CCAACAAAATACTTCAGCTC+TGG | 0.471925 | tig0021196:-62366 | None:intergenic |
| AACAAACAAGTACACAAAAT+GGG | 0.481063 | tig0021196:+61078 | Msa1388840:exon |
| AAGAAGAAGGAGAGAGAATG+TGG | 0.481759 | tig0021196:-61170 | None:intergenic |
| TGATATGCGCATGGATCCTC+AGG | 0.483397 | tig0021196:+62941 | Msa1388840:CDS |
| GTCTATTGATGGCATCTTGA+TGG | 0.483474 | tig0021196:+62548 | Msa1388840:CDS |
| AGAATAATTCCATTTGATCC+AGG | 0.483518 | tig0021196:-67074 | None:intergenic |
| CCTGGGCATGTCATCTATGC+AGG | 0.484557 | tig0021196:+62572 | Msa1388840:CDS |
| ATCCACCTTCTAAACGGGCT+TGG | 0.488947 | tig0021196:-63544 | None:intergenic |
| GAGATCCAGCAAGTCGGTAG+TGG | 0.489155 | tig0021196:-63573 | None:intergenic |
| GGGATGGATGTGGACCCTGT+GGG | 0.491622 | tig0021196:+62387 | Msa1388840:CDS |
| TATATCCTTTCACAGTTTGG+AGG | 0.492823 | tig0021196:+66914 | Msa1388840:CDS |
| CCCCATAATCCCTTAGGATA+CGG | 0.499959 | tig0021196:-63484 | None:intergenic |
| TTCTCAATGCTTGAAATACC+CGG | 0.500262 | tig0021196:-66806 | None:intergenic |
| CAAAGAGGATTCAGTGTGCT+TGG | 0.501712 | tig0021196:+62906 | Msa1388840:CDS |
| AAATGAAGACATGGGAGAAG+GGG | 0.519276 | tig0021196:+66977 | Msa1388840:CDS |
| AGCACACTGAATCCTCTTTG+AGG | 0.522390 | tig0021196:-62903 | None:intergenic |
| TCTGTCCTCCAAACTGTGAA+AGG | 0.522906 | tig0021196:-66919 | None:intergenic |
| TGGGATGGATGTGGACCCTG+TGG | 0.531423 | tig0021196:+62386 | Msa1388840:CDS |
| TGGATAAGACAAGTAATGCC+TGG | 0.535917 | tig0021196:+67056 | Msa1388840:CDS |
| TCTGGAAGAAGCGGTGGTGA+GGG | 0.537069 | tig0021196:-61205 | None:intergenic |
| TAACAGGTGGAAGGCAAGGT+TGG | 0.538141 | tig0021196:+66769 | Msa1388840:intron |
| GGAAATGAAGACATGGGAGA+AGG | 0.547942 | tig0021196:+66975 | Msa1388840:CDS |
| ATGATAGAAACTAACATTGG+TGG | 0.548892 | tig0021196:-61439 | None:intergenic |
| GGATTCAGTGTGCTTGGTGA+TGG | 0.548903 | tig0021196:+62912 | Msa1388840:CDS |
| GTCCAAGCCCGTTTAGAAGG+TGG | 0.550656 | tig0021196:+63542 | Msa1388840:CDS |
| TTCTGGAAGAAGCGGTGGTG+AGG | 0.550767 | tig0021196:-61206 | None:intergenic |
| CAAATCTGTGCTTAGAGGAA+CGG | 0.551524 | tig0021196:+62503 | Msa1388840:CDS |
| TGAGCCGTGTCACTCCCCAC+AGG | 0.557923 | tig0021196:-62402 | None:intergenic |
| GTCCAAAACTGAACTGATGC+GGG | 0.565422 | tig0021196:-62427 | None:intergenic |
| AACCGAAGCAGCACTTGCCA+AGG | 0.567853 | tig0021196:+61245 | Msa1388840:CDS |
| GCAGTCAAAACAAGAATAGA+GGG | 0.571058 | tig0021196:-66865 | None:intergenic |
| TTGGATAAAGACAGCAACCC+GGG | 0.572572 | tig0021196:+66788 | Msa1388840:CDS |
| GGATGGATGTGGACCCTGTG+GGG | 0.572979 | tig0021196:+62388 | Msa1388840:CDS |
| ACTGTAACAGGTGGAAGGCA+AGG | 0.580203 | tig0021196:+66765 | Msa1388840:intron |
| ATTAAAGGAAATGAAGACAT+GGG | 0.581318 | tig0021196:+66969 | Msa1388840:CDS |
| AATTACGCCATCAGAAGAAG+AGG | 0.582706 | tig0021196:+67109 | Msa1388840:CDS |
| TGATGAACTGAAGACTCTTG+AGG | 0.586961 | tig0021196:+66839 | Msa1388840:CDS |
| AAGTAGAAGTGCAAAGCTCA+GGG | 0.588150 | tig0021196:+67148 | Msa1388840:CDS |
| TAATTATTAAAGCAAAGATA+CGG | 0.594374 | tig0021196:-67248 | None:intergenic |
| AATTAAAGGAAATGAAGACA+TGG | 0.596968 | tig0021196:+66968 | Msa1388840:CDS |
| CGTCCAAAACTGAACTGATG+CGG | 0.599707 | tig0021196:-62428 | None:intergenic |
| TCTCAATGCTTGAAATACCC+GGG | 0.602177 | tig0021196:-66805 | None:intergenic |
| CCTGCATAGATGACATGCCC+AGG | 0.608670 | tig0021196:-62572 | None:intergenic |
| TAGGTGGATGATCCTCAAAG+AGG | 0.608837 | tig0021196:+62891 | Msa1388840:intron |
| TGAAGTGGGCCGTATCCTAA+GGG | 0.612320 | tig0021196:+63475 | Msa1388840:CDS |
| TGTGCTTAGAGGAACGGGAG+AGG | 0.612987 | tig0021196:+62509 | Msa1388840:CDS |
| ATTACACTGTAACAGGTGGA+AGG | 0.615852 | tig0021196:+66760 | Msa1388840:intron |
| GCTTTGCACTTCTACTTCTG+CGG | 0.620414 | tig0021196:-67142 | None:intergenic |
| AACGGGAGAGGAGCACTTAG+GGG | 0.624347 | tig0021196:+62521 | Msa1388840:CDS |
| GTTGGATAAAGACAGCAACC+CGG | 0.630481 | tig0021196:+66787 | Msa1388840:CDS |
| CTTTGTGATTCTGGAAGAAG+CGG | 0.636349 | tig0021196:-61214 | None:intergenic |
| GAGCCGTGTCACTCCCCACA+GGG | 0.640379 | tig0021196:-62401 | None:intergenic |
| GATGGCATCTTGATGGACCT+GGG | 0.642501 | tig0021196:+62555 | Msa1388840:CDS |
| TTCTTGGCCAGATACTGAAG+TGG | 0.644803 | tig0021196:+63460 | Msa1388840:CDS |
| GGACCCTGTGGGGAGTGACA+CGG | 0.650344 | tig0021196:+62398 | Msa1388840:CDS |
| CCGTATCCTAAGGGATTATG+GGG | 0.656929 | tig0021196:+63484 | Msa1388840:CDS |
| TGGACCACTTGATATGCGCA+TGG | 0.657010 | tig0021196:+62932 | Msa1388840:CDS |
| TGTGATTCTGGAAGAAGCGG+TGG | 0.659825 | tig0021196:-61211 | None:intergenic |
| GGATCCATGCGCATATCAAG+TGG | 0.659855 | tig0021196:-62936 | None:intergenic |
| TCTTGGCCAGATACTGAAGT+GGG | 0.661677 | tig0021196:+63461 | Msa1388840:CDS |
| CTGAATGAGATCCAGCAAGT+CGG | 0.673086 | tig0021196:-63579 | None:intergenic |
| TTCTGATAAAGAACTCGACA+AGG | 0.673094 | tig0021196:+61284 | Msa1388840:CDS |
| TTCCAGACCTAAACTCACTG+TGG | 0.693459 | tig0021196:-61057 | None:intergenic |
| TTTGACTGCCTTGCACCTGG+GGG | 0.710830 | tig0021196:+66879 | Msa1388840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAGAGTTAAATAATTT+TGG | - | tig0021196:61717-61736 | None:intergenic | 10.0% |
| !!! | ATACAAAGTATATTTTTTTA+TGG | - | tig0021196:62093-62112 | None:intergenic | 10.0% |
| !!! | AAATAAATAGATTTTATAGT+GGG | - | tig0021196:63974-63993 | None:intergenic | 10.0% |
| !! | TATAAAATCTATTTATTTGT+GGG | + | tig0021196:63976-63995 | Msa1388840:intron | 10.0% |
| !! | AAGAAAAAAATTATAATATG+GGG | - | tig0021196:64012-64031 | None:intergenic | 10.0% |
| !!! | AAAATGTTTATAGAAATTTT+GGG | + | tig0021196:65922-65941 | Msa1388840:intron | 10.0% |
| !! | ACATTTCTTAATATAATTAA+AGG | + | tig0021196:66954-66973 | Msa1388840:CDS | 10.0% |
| !!! | CATATTTTTTTTTTTTTTGA+AGG | - | tig0021196:67364-67383 | None:intergenic | 10.0% |
| !! | TAATGACATGAAAATTTATA+AGG | - | tig0021196:62118-62137 | None:intergenic | 15.0% |
| !!! | AAGATTAAACAAAATCATTT+TGG | - | tig0021196:62778-62797 | None:intergenic | 15.0% |
| !!! | AATGATTTTGTTTAATCTTA+TGG | + | tig0021196:62779-62798 | Msa1388840:intron | 15.0% |
| !!! | AAATAATTCTTTTCAATTAG+GGG | - | tig0021196:63942-63961 | None:intergenic | 15.0% |
| !!! | CAAATAATTCTTTTCAATTA+GGG | - | tig0021196:63943-63962 | None:intergenic | 15.0% |
| !! | CTAATTGAAAAGAATTATTT+GGG | + | tig0021196:63942-63961 | Msa1388840:intron | 15.0% |
| !! | TAATTGAAAAGAATTATTTG+GGG | + | tig0021196:63943-63962 | Msa1388840:intron | 15.0% |
| !!! | CAAATAAATAGATTTTATAG+TGG | - | tig0021196:63975-63994 | None:intergenic | 15.0% |
| !! | CTATAAAATCTATTTATTTG+TGG | + | tig0021196:63975-63994 | Msa1388840:intron | 15.0% |
| !!! | GTTGTTTTTTAAAATGAAAT+CGG | + | tig0021196:65589-65608 | Msa1388840:intron | 15.0% |
| !!! | GAAAATGTTTATAGAAATTT+TGG | + | tig0021196:65921-65940 | Msa1388840:intron | 15.0% |
| !!! | AAATGTTTATAGAAATTTTG+GGG | + | tig0021196:65923-65942 | Msa1388840:intron | 15.0% |
| !! | TAATTATTAAAGCAAAGATA+CGG | - | tig0021196:67251-67270 | None:intergenic | 15.0% |
| !!! | AAAAAAATATGACGTTTTTT+TGG | + | tig0021196:67373-67392 | Msa1388840:three_prime_UTR | 15.0% |
| !!! | AGATATGTGTATTTTTTTTA+AGG | + | tig0021196:67436-67455 | Msa1388840:intron | 15.0% |
| !!! | GATATGTGTATTTTTTTTAA+GGG | + | tig0021196:67437-67456 | Msa1388840:intron | 15.0% |
| !! | TTTATGATAGAAACTAACAT+TGG | - | tig0021196:61445-61464 | None:intergenic | 20.0% |
| !! | AAATACAATTATCCAATCAA+CGG | + | tig0021196:61840-61859 | Msa1388840:intron | 20.0% |
| !!! | AATTTTCATGTCATTATAAG+AGG | + | tig0021196:62122-62141 | Msa1388840:intron | 20.0% |
| !!! | GAACATTTTTACATAGTATT+TGG | - | tig0021196:62235-62254 | None:intergenic | 20.0% |
| !! | AATGTATCATATATAAAGCA+GGG | - | tig0021196:62605-62624 | None:intergenic | 20.0% |
| !! | AAAAAGATTAGACAAAATCA+CGG | - | tig0021196:62746-62765 | None:intergenic | 20.0% |
| !! | CCTAAAACAAAAAACATATA+AGG | - | tig0021196:62875-62894 | None:intergenic | 20.0% |
| !!! | CCTTATATGTTTTTTGTTTT+AGG | + | tig0021196:62872-62891 | Msa1388840:intron | 20.0% |
| !!! | TATATGTTTTTTGTTTTAGG+TGG | + | tig0021196:62875-62894 | Msa1388840:intron | 20.0% |
| !!! | ATTTCTATAATACAGTTTTG+TGG | + | tig0021196:63190-63209 | Msa1388840:intron | 20.0% |
| !! | ATTCATAATATGCTATAACA+TGG | + | tig0021196:63730-63749 | Msa1388840:intron | 20.0% |
| !!! | AATAATTCTTTTCAATTAGG+GGG | - | tig0021196:63941-63960 | None:intergenic | 20.0% |
| !!! | CCAAATAATTCTTTTCAATT+AGG | - | tig0021196:63944-63963 | None:intergenic | 20.0% |
| !! | CCTAATTGAAAAGAATTATT+TGG | + | tig0021196:63941-63960 | Msa1388840:intron | 20.0% |
| !!! | GTATAAATAAGTTGTTTTGA+AGG | + | tig0021196:65381-65400 | Msa1388840:intron | 20.0% |
| !! | TAAAAATCCACAAGATTAAA+AGG | - | tig0021196:65996-66015 | None:intergenic | 20.0% |
| !! | TACAAATTCAATTTCAAAGA+TGG | + | tig0021196:66141-66160 | Msa1388840:intron | 20.0% |
| !!! | CAATACAATTGTTTTTTCTT+GGG | + | tig0021196:66215-66234 | Msa1388840:intron | 20.0% |
| !!! | AAGAATAAAGTATTTATGCA+GGG | + | tig0021196:66472-66491 | Msa1388840:intron | 20.0% |
| ! | AACAAACAAGTACACAAAAT+GGG | + | tig0021196:61078-61097 | Msa1388840:exon | 25.0% |
| !! | TTCTTCTTATTTGTGTATTG+TGG | + | tig0021196:61481-61500 | Msa1388840:intron | 25.0% |
| !! | CTATTTTCACAAATTCTCTT+AGG | - | tig0021196:61611-61630 | None:intergenic | 25.0% |
| !! | TCTAAGATAGCTTATGAAAA+CGG | + | tig0021196:61678-61697 | Msa1388840:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | + | tig0021196:61791-61810 | Msa1388840:intron | 25.0% |
| ! | CTATATAATATTCCGTTGAT+TGG | - | tig0021196:61855-61874 | None:intergenic | 25.0% |
| ! | GAATATTATATAGCCAAAGA+TGG | + | tig0021196:61862-61881 | Msa1388840:intron | 25.0% |
| ! | ATGTACTTTGTATAATCAAG+TGG | + | tig0021196:61930-61949 | Msa1388840:intron | 25.0% |
| ! | TTCAATTTCTTGAAAGGAAT+GGG | - | tig0021196:62159-62178 | None:intergenic | 25.0% |
| ! | ATTCAATTTCTTGAAAGGAA+TGG | - | tig0021196:62160-62179 | None:intergenic | 25.0% |
| !!! | CTTGTTATTGAATGATTGAA+TGG | + | tig0021196:62323-62342 | Msa1388840:intron | 25.0% |
| ! | ATTGAATGATTGAATGGAAT+AGG | + | tig0021196:62329-62348 | Msa1388840:intron | 25.0% |
| !! | TTACTGTGTTAAGGAATTTT+AGG | + | tig0021196:62475-62494 | Msa1388840:CDS | 25.0% |
| ! | CAATGTATCATATATAAAGC+AGG | - | tig0021196:62606-62625 | None:intergenic | 25.0% |
| ! | ACAAACAATAAGAAAACTTC+AGG | - | tig0021196:62851-62870 | None:intergenic | 25.0% |
| ! | CAATGAAAATTTATGCTCTT+TGG | + | tig0021196:62988-63007 | Msa1388840:intron | 25.0% |
| !!! | GTCTCTTTTCTTAATTTGAA+TGG | + | tig0021196:63138-63157 | Msa1388840:intron | 25.0% |
| ! | AATATTACAATGAGGTGAAA+AGG | - | tig0021196:63290-63309 | None:intergenic | 25.0% |
| ! | CACTCAAAAATATTACAATG+AGG | - | tig0021196:63298-63317 | None:intergenic | 25.0% |
| ! | TTAAGTAAATAAGTTACGTG+TGG | + | tig0021196:63327-63346 | Msa1388840:intron | 25.0% |
| ! | TTTCTTTCCTATTAAACTGA+TGG | + | tig0021196:63393-63412 | Msa1388840:intron | 25.0% |
| ! | TTAATATGTCTTCTGCTTTA+AGG | - | tig0021196:63439-63458 | None:intergenic | 25.0% |
| ! | CAGAAGACATATTAAATTCT+TGG | + | tig0021196:63444-63463 | Msa1388840:CDS | 25.0% |
| !!! | TTATAATATGGGGCTTTATT+AGG | - | tig0021196:64002-64021 | None:intergenic | 25.0% |
| !!! | TTGTTTTGAATAAGCTGTTT+TGG | - | tig0021196:65686-65705 | None:intergenic | 25.0% |
| !!! | GCAATACAATTGTTTTTTCT+TGG | + | tig0021196:66214-66233 | Msa1388840:intron | 25.0% |
| ! | TTTGTAAAGTAAGCAATCAA+AGG | - | tig0021196:66397-66416 | None:intergenic | 25.0% |
| ! | CACTTCTCAAATTCAAAATA+TGG | - | tig0021196:66429-66448 | None:intergenic | 25.0% |
| ! | GCATAAATACTTTATTCTTC+TGG | - | tig0021196:66471-66490 | None:intergenic | 25.0% |
| !! | GAAGAATAAAGTATTTATGC+AGG | + | tig0021196:66471-66490 | Msa1388840:intron | 25.0% |
| !!! | AATTTTGATTACACTGTAAC+AGG | + | tig0021196:66753-66772 | Msa1388840:intron | 25.0% |
| ! | AATTAAAGGAAATGAAGACA+TGG | + | tig0021196:66968-66987 | Msa1388840:CDS | 25.0% |
| ! | ATTAAAGGAAATGAAGACAT+GGG | + | tig0021196:66969-66988 | Msa1388840:CDS | 25.0% |
| ! | AAATCAAAGAAAAAGAAGCA+TGG | + | tig0021196:67036-67055 | Msa1388840:CDS | 25.0% |
| ! | ATATTTATCCCTATATCTCT+TGG | - | tig0021196:67498-67517 | None:intergenic | 25.0% |
| ! | AATATACACGATATCACTTA+AGG | + | tig0021196:67513-67532 | Msa1388840:intron | 25.0% |
| GAACAAACAAGTACACAAAA+TGG | + | tig0021196:61077-61096 | Msa1388840:exon | 30.0% | |
| ! | AATACTTCAGAAAGCATAAC+AGG | - | tig0021196:61354-61373 | None:intergenic | 30.0% |
| !! | TGTTATGCTTTCTGAAGTAT+TGG | + | tig0021196:61353-61372 | Msa1388840:CDS | 30.0% |
| GAAAGAAGTTAAGGAAGAAT+TGG | - | tig0021196:61388-61407 | None:intergenic | 30.0% | |
| ACAATCAACGAAAGAAGTTA+AGG | - | tig0021196:61397-61416 | None:intergenic | 30.0% | |
| ATGATAGAAACTAACATTGG+TGG | - | tig0021196:61442-61461 | None:intergenic | 30.0% | |
| AATGTGAATGCATAGAACAT+AGG | - | tig0021196:61817-61836 | None:intergenic | 30.0% | |
| TAATCAGATTTCACCATCTT+TGG | - | tig0021196:61878-61897 | None:intergenic | 30.0% | |
| !!! | CTTTTAAAGTCAAATCCATC+TGG | + | tig0021196:61961-61980 | Msa1388840:intron | 30.0% |
| GTGTGATTCAATTTCTTGAA+AGG | - | tig0021196:62165-62184 | None:intergenic | 30.0% | |
| !! | TGAAAGTGTTTACTGTGTTA+AGG | + | tig0021196:62466-62485 | Msa1388840:CDS | 30.0% |
| ! | TGCTATTTAAAACCATGAGT+AGG | - | tig0021196:62650-62669 | None:intergenic | 30.0% |
| TTTGTTTAATCTTATGGTGC+TGG | + | tig0021196:62785-62804 | Msa1388840:intron | 30.0% | |
| ! | CAATTTTCTGATCGATTACT+AGG | + | tig0021196:63057-63076 | Msa1388840:intron | 30.0% |
| ! | TTACTAGGAGTAAAAAGTGT+TGG | + | tig0021196:63072-63091 | Msa1388840:intron | 30.0% |
| GTTAATGTTGTAGCATTGTA+TGG | + | tig0021196:63101-63120 | Msa1388840:intron | 30.0% | |
| GAAATAGCAATACATGTCTT+CGG | - | tig0021196:63175-63194 | None:intergenic | 30.0% | |
| AATGTAATCCACCTTCTAAA+CGG | - | tig0021196:63553-63572 | None:intergenic | 30.0% | |
| GAAAATGCAATAGACATTTG+TGG | - | tig0021196:63814-63833 | None:intergenic | 30.0% | |
| TCCTAATGAAAATTCCTACT+TGG | + | tig0021196:63834-63853 | Msa1388840:intron | 30.0% | |
| ! | ACCAAGTAGGAATTTTCATT+AGG | - | tig0021196:63838-63857 | None:intergenic | 30.0% |
| !! | TTAAGTGGGCTTTGAAATTT+GGG | - | tig0021196:63887-63906 | None:intergenic | 30.0% |
| !! | TTTAAGTGGGCTTTGAAATT+TGG | - | tig0021196:63888-63907 | None:intergenic | 30.0% |
| !! | TTTAATTTAGTGGGCTTAGT+GGG | - | tig0021196:63917-63936 | None:intergenic | 30.0% |
| !!! | AATAGATTTTATAGTGGGCT+TGG | - | tig0021196:63969-63988 | None:intergenic | 30.0% |
| TGTTGCAATTTGAGTCAATA+TGG | - | tig0021196:66250-66269 | None:intergenic | 30.0% | |
| ! | TTTTGCATGATGTTACAGAT+AGG | + | tig0021196:66300-66319 | Msa1388840:intron | 30.0% |
| TTACAGATAGGTCTTTCAAA+GGG | + | tig0021196:66312-66331 | Msa1388840:intron | 30.0% | |
| !!! | AGGTATATTTCCTAGTTTTG+AGG | - | tig0021196:66377-66396 | None:intergenic | 30.0% |
| ! | AATTTGAGAAGTGTAGTAGT+TGG | + | tig0021196:66436-66455 | Msa1388840:intron | 30.0% |
| ! | TCAGACCACAAATTTTTACA+TGG | + | tig0021196:66700-66719 | Msa1388840:intron | 30.0% |
| GCTATCCATGTAAAAATTTG+TGG | - | tig0021196:66708-66727 | None:intergenic | 30.0% | |
| TGTTATATCCTTTCACAGTT+TGG | + | tig0021196:66911-66930 | Msa1388840:CDS | 30.0% | |
| AGAGTTGCAATAATGATCTT+AGG | + | tig0021196:67000-67019 | Msa1388840:CDS | 30.0% | |
| AGAATAATTCCATTTGATCC+AGG | - | tig0021196:67077-67096 | None:intergenic | 30.0% | |
| AAGAAATGTCCAAGAGATAT+AGG | + | tig0021196:67486-67505 | Msa1388840:intron | 30.0% | |
| AGAAATGTCCAAGAGATATA+GGG | + | tig0021196:67487-67506 | Msa1388840:intron | 30.0% | |
| AGAATGTGGTGAATGAGTTT+AGG | - | tig0021196:61159-61178 | None:intergenic | 35.0% | |
| !! | GTTCTGAGATTTGAAGAAGA+AGG | - | tig0021196:61186-61205 | None:intergenic | 35.0% |
| ! | TTTCTTGGTCTTTGTGATTC+TGG | - | tig0021196:61226-61245 | None:intergenic | 35.0% |
| TTCTGATAAAGAACTCGACA+AGG | + | tig0021196:61284-61303 | Msa1388840:CDS | 35.0% | |
| ! | TCTTTCGTTGATTGTACTCT+TGG | + | tig0021196:61402-61421 | Msa1388840:CDS | 35.0% |
| CAAAACAAGCCTAATCCAAA+CGG | + | tig0021196:61583-61602 | Msa1388840:intron | 35.0% | |
| AAAACAAGCCTAATCCAAAC+GGG | + | tig0021196:61584-61603 | Msa1388840:intron | 35.0% | |
| TTTCAGCTAGGAATCAAACT+CGG | - | tig0021196:61992-62011 | None:intergenic | 35.0% | |
| TTCCTAGCTGAAACAATTCT+TGG | + | tig0021196:61999-62018 | Msa1388840:intron | 35.0% | |
| TTGGTTGAAGAGAAATAGAG+AGG | - | tig0021196:62216-62235 | None:intergenic | 35.0% | |
| TGAATGGAATAGGTGATTAG+AGG | + | tig0021196:62339-62358 | Msa1388840:intron | 35.0% | |
| !! | CAGAGCTGAAGTATTTTGTT+GGG | + | tig0021196:62367-62386 | Msa1388840:CDS | 35.0% |
| ! | TGCTGAACTGCTATATTTTG+TGG | + | tig0021196:62693-62712 | Msa1388840:intron | 35.0% |
| AGGTAGACTTTAATGCGTTT+AGG | + | tig0021196:62961-62980 | Msa1388840:intron | 35.0% | |
| ! | ATTTAGACAGAAGCACAAGT+CGG | - | tig0021196:63225-63244 | None:intergenic | 35.0% |
| ! | TTCCTATTAAACTGATGGAC+AGG | + | tig0021196:63398-63417 | Msa1388840:intron | 35.0% |
| ATTATGGGGAAGAGAGTAAT+TGG | + | tig0021196:63498-63517 | Msa1388840:CDS | 35.0% | |
| ATGTAATCCACCTTCTAAAC+GGG | - | tig0021196:63552-63571 | None:intergenic | 35.0% | |
| !!! | TGCAGGCTCTATTTTTTTCT+AGG | + | tig0021196:63651-63670 | Msa1388840:intron | 35.0% |
| !! | TAAGTGGGCTTTGAAATTTG+GGG | - | tig0021196:63886-63905 | None:intergenic | 35.0% |
| !! | TTAATTTAGTGGGCTTAGTG+GGG | - | tig0021196:63916-63935 | None:intergenic | 35.0% |
| !! | CTTTAATTTAGTGGGCTTAG+TGG | - | tig0021196:63918-63937 | None:intergenic | 35.0% |
| ! | TTAGGGGGCTTTAATTTAGT+GGG | - | tig0021196:63926-63945 | None:intergenic | 35.0% |
| ! | ATTAGGGGGCTTTAATTTAG+TGG | - | tig0021196:63927-63946 | None:intergenic | 35.0% |
| !!! | TTTATAGAAATTTTGGGGCC+TGG | + | tig0021196:65928-65947 | Msa1388840:intron | 35.0% |
| !!! | TTATAGAAATTTTGGGGCCT+GGG | + | tig0021196:65929-65948 | Msa1388840:intron | 35.0% |
| ! | TTTTAAGCCCCATTACTATG+TGG | + | tig0021196:66011-66030 | Msa1388840:intron | 35.0% |
| TTTAAGCCCCATTACTATGT+GGG | + | tig0021196:66012-66031 | Msa1388840:intron | 35.0% | |
| !! | TTAGAGGTGTCAATATCATG+GGG | - | tig0021196:66058-66077 | None:intergenic | 35.0% |
| !! | GTTAGAGGTGTCAATATCAT+GGG | - | tig0021196:66059-66078 | None:intergenic | 35.0% |
| !! | AGTTAGAGGTGTCAATATCA+TGG | - | tig0021196:66060-66079 | None:intergenic | 35.0% |
| !!! | TATTTTGGTCTTCGAGGATT+GGG | - | tig0021196:66089-66108 | None:intergenic | 35.0% |
| AAGACCAAAATACCCTAGTT+GGG | + | tig0021196:66097-66116 | Msa1388840:intron | 35.0% | |
| TGGTTCAAACAAGAAACCTT+TGG | + | tig0021196:66161-66180 | Msa1388840:intron | 35.0% | |
| TTCAAACAAGAAACCTTTGG+AGG | + | tig0021196:66164-66183 | Msa1388840:intron | 35.0% | |
| GTTACAGATAGGTCTTTCAA+AGG | + | tig0021196:66311-66330 | Msa1388840:intron | 35.0% | |
| ! | TAAAGTATTTATGCAGGGTG+AGG | + | tig0021196:66477-66496 | Msa1388840:intron | 35.0% |
| ! | CAGAAAGCATATACAAGTAG+TGG | + | tig0021196:66517-66536 | Msa1388840:intron | 35.0% |
| ! | TTCTTGACTGACATTTTTGC+TGG | + | tig0021196:66646-66665 | Msa1388840:intron | 35.0% |
| CGAATTCATAACACAAGCTT+TGG | + | tig0021196:66676-66695 | Msa1388840:intron | 35.0% | |
| TTTGATTACACTGTAACAGG+TGG | + | tig0021196:66756-66775 | Msa1388840:intron | 35.0% | |
| TTCTCAATGCTTGAAATACC+CGG | - | tig0021196:66809-66828 | None:intergenic | 35.0% | |
| GCAGTCAAAACAAGAATAGA+GGG | - | tig0021196:66868-66887 | None:intergenic | 35.0% | |
| TATATCCTTTCACAGTTTGG+AGG | + | tig0021196:66914-66933 | Msa1388840:CDS | 35.0% | |
| CTCATCAGTAGAAAAGTTCA+AGG | + | tig0021196:67277-67296 | Msa1388840:three_prime_UTR | 35.0% | |
| ! | CTTTGAATGACTTGCACATA+CGG | + | tig0021196:67567-67586 | Msa1388840:intron | 35.0% |
| GTTACTACCACAGTGAGTTT+AGG | + | tig0021196:61050-61069 | Msa1388840:five_prime_UTR | 40.0% | |
| ! | GTGGTGAATGAGTTTAGGTT+TGG | - | tig0021196:61154-61173 | None:intergenic | 40.0% |
| AAGAAGAAGGAGAGAGAATG+TGG | - | tig0021196:61173-61192 | None:intergenic | 40.0% | |
| ! | CTTTGTGATTCTGGAAGAAG+CGG | - | tig0021196:61217-61236 | None:intergenic | 40.0% |
| AAATTCTCTTAGGTCCCGTT+TGG | - | tig0021196:61601-61620 | None:intergenic | 40.0% | |
| CATAGAACATAGGCCATGTT+TGG | - | tig0021196:61807-61826 | None:intergenic | 40.0% | |
| AGCCAAGAATTGTTTCAGCT+AGG | - | tig0021196:62004-62023 | None:intergenic | 40.0% | |
| TAGTAATTTGGGGATTGGGT+GGG | - | tig0021196:62043-62062 | None:intergenic | 40.0% | |
| ACCCAATCCCCAAATTACTA+GGG | + | tig0021196:62043-62062 | Msa1388840:intron | 40.0% | |
| CCAACAAAATACTTCAGCTC+TGG | - | tig0021196:62369-62388 | None:intergenic | 40.0% | |
| !! | CCAGAGCTGAAGTATTTTGT+TGG | + | tig0021196:62366-62385 | Msa1388840:CDS | 40.0% |
| !! | GCTGAAGTATTTTGTTGGGA+TGG | + | tig0021196:62371-62390 | Msa1388840:CDS | 40.0% |
| ! | GTATTTTGTTGGGATGGATG+TGG | + | tig0021196:62377-62396 | Msa1388840:CDS | 40.0% |
| !!! | TCAGTTCAGTTTTGGACGAT+AGG | + | tig0021196:62433-62452 | Msa1388840:CDS | 40.0% |
| !!! | CAGTTCAGTTTTGGACGATA+GGG | + | tig0021196:62434-62453 | Msa1388840:CDS | 40.0% |
| CACATCAAATCTGTGCTTAG+AGG | + | tig0021196:62498-62517 | Msa1388840:CDS | 40.0% | |
| CAAATCTGTGCTTAGAGGAA+CGG | + | tig0021196:62503-62522 | Msa1388840:CDS | 40.0% | |
| AAATCTGTGCTTAGAGGAAC+GGG | + | tig0021196:62504-62523 | Msa1388840:CDS | 40.0% | |
| ! | GTCTATTGATGGCATCTTGA+TGG | + | tig0021196:62548-62567 | Msa1388840:CDS | 40.0% |
| AACGCATTAAAGTCTACCTG+AGG | - | tig0021196:62960-62979 | None:intergenic | 40.0% | |
| TAGCAATACATGTCTTCGGT+TGG | - | tig0021196:63171-63190 | None:intergenic | 40.0% | |
| ! | TTTAGACAGAAGCACAAGTC+GGG | - | tig0021196:63224-63243 | None:intergenic | 40.0% |
| TGTATTACTCTGCAGTAAGC+AGG | - | tig0021196:63368-63387 | None:intergenic | 40.0% | |
| TGACTCCTGGAATGAAAAGT+AGG | + | tig0021196:63606-63625 | Msa1388840:intron | 40.0% | |
| CTGCAATAGAAAACTGGAGA+AGG | - | tig0021196:63636-63655 | None:intergenic | 40.0% | |
| ! | CTTCTCCAGTTTTCTATTGC+AGG | + | tig0021196:63634-63653 | Msa1388840:intron | 40.0% |
| TAGAGCCTGCAATAGAAAAC+TGG | - | tig0021196:63642-63661 | None:intergenic | 40.0% | |
| TGACTGTGAAGGGAAAGTTA+CGG | - | tig0021196:63775-63794 | None:intergenic | 40.0% | |
| GAGTGGAATTTGACTGTGAA+GGG | - | tig0021196:63785-63804 | None:intergenic | 40.0% | |
| TGAGTGGAATTTGACTGTGA+AGG | - | tig0021196:63786-63805 | None:intergenic | 40.0% | |
| GACATTTGTGGAATCTTGAG+TGG | - | tig0021196:63802-63821 | None:intergenic | 40.0% | |
| CTCTAGCAATAGTACCAAGT+AGG | - | tig0021196:63851-63870 | None:intergenic | 40.0% | |
| CTACTTGGTACTATTGCTAG+AGG | + | tig0021196:63849-63868 | Msa1388840:intron | 40.0% | |
| !!! | TAGTGGGGGCTTTTTTAAGT+GGG | - | tig0021196:63901-63920 | None:intergenic | 40.0% |
| !!! | TTAGTGGGGGCTTTTTTAAG+TGG | - | tig0021196:63902-63921 | None:intergenic | 40.0% |
| !! | TAATTTAGTGGGCTTAGTGG+GGG | - | tig0021196:63915-63934 | None:intergenic | 40.0% |
| !!! | TATAGAAATTTTGGGGCCTG+GGG | + | tig0021196:65930-65949 | Msa1388840:intron | 40.0% |
| !!! | CTTGAGGGCTTTTGATTTGT+GGG | + | tig0021196:65954-65973 | Msa1388840:intron | 40.0% |
| ! | ATGTGGGCCTTTTAATCTTG+TGG | + | tig0021196:65986-66005 | Msa1388840:intron | 40.0% |
| !! | ATTTTGGTCTTCGAGGATTG+GGG | - | tig0021196:66088-66107 | None:intergenic | 40.0% |
| !!! | GTATTTTGGTCTTCGAGGAT+TGG | - | tig0021196:66090-66109 | None:intergenic | 40.0% |
| GAAGACCAAAATACCCTAGT+TGG | + | tig0021196:66096-66115 | Msa1388840:intron | 40.0% | |
| TATGCACTATGATGCATCAG+AGG | + | tig0021196:66277-66296 | Msa1388840:intron | 40.0% | |
| GATCTTCAGTCCTCAAAACT+AGG | + | tig0021196:66364-66383 | Msa1388840:intron | 40.0% | |
| ATTACACTGTAACAGGTGGA+AGG | + | tig0021196:66760-66779 | Msa1388840:intron | 40.0% | |
| TCTCAATGCTTGAAATACCC+GGG | - | tig0021196:66808-66827 | None:intergenic | 40.0% | |
| TGATGAACTGAAGACTCTTG+AGG | + | tig0021196:66839-66858 | Msa1388840:CDS | 40.0% | |
| GGCAGTCAAAACAAGAATAG+AGG | - | tig0021196:66869-66888 | None:intergenic | 40.0% | |
| GAAATGAAGACATGGGAGAA+GGG | + | tig0021196:66976-66995 | Msa1388840:CDS | 40.0% | |
| AAATGAAGACATGGGAGAAG+GGG | + | tig0021196:66977-66996 | Msa1388840:CDS | 40.0% | |
| TGGATAAGACAAGTAATGCC+TGG | + | tig0021196:67056-67075 | Msa1388840:CDS | 40.0% | |
| CAAGTAATGCCTGGATCAAA+TGG | + | tig0021196:67065-67084 | Msa1388840:CDS | 40.0% | |
| ! | TCTTCTTCTGATGGCGTAAT+TGG | - | tig0021196:67110-67129 | None:intergenic | 40.0% |
| AATTACGCCATCAGAAGAAG+AGG | + | tig0021196:67109-67128 | Msa1388840:CDS | 40.0% | |
| AAGTTCTCCTCTTCTTCTGA+TGG | - | tig0021196:67119-67138 | None:intergenic | 40.0% | |
| ! | AAGTAGAAGTGCAAAGCTCA+GGG | + | tig0021196:67148-67167 | Msa1388840:CDS | 40.0% |
| TACCACAGTGAGTTTAGGTC+TGG | + | tig0021196:61055-61074 | Msa1388840:five_prime_UTR | 45.0% | |
| TTCCAGACCTAAACTCACTG+TGG | - | tig0021196:61060-61079 | None:intergenic | 45.0% | |
| !!! | AAGTGCTGCTTCGGTTTTCT+TGG | - | tig0021196:61241-61260 | None:intergenic | 45.0% |
| ! | ACGCGTTCTTCTCTTTTCCT+TGG | - | tig0021196:61265-61284 | None:intergenic | 45.0% |
| TCTTAGGTCCCGTTTGGATT+AGG | - | tig0021196:61595-61614 | None:intergenic | 45.0% | |
| TCAAACTCGGATACTCCAGA+TGG | - | tig0021196:61979-61998 | None:intergenic | 45.0% | |
| AGTAATTTGGGGATTGGGTG+GGG | - | tig0021196:62042-62061 | None:intergenic | 45.0% | |
| CTAGTAATTTGGGGATTGGG+TGG | - | tig0021196:62044-62063 | None:intergenic | 45.0% | |
| CACCCAATCCCCAAATTACT+AGG | + | tig0021196:62042-62061 | Msa1388840:intron | 45.0% | |
| CCCCTAGTAATTTGGGGATT+GGG | - | tig0021196:62047-62066 | None:intergenic | 45.0% | |
| CCCAATCCCCAAATTACTAG+GGG | + | tig0021196:62044-62063 | Msa1388840:intron | 45.0% | |
| ! | ATCCCGCATCAGTTCAGTTT+TGG | + | tig0021196:62425-62444 | Msa1388840:CDS | 45.0% |
| GTCCAAAACTGAACTGATGC+GGG | - | tig0021196:62430-62449 | None:intergenic | 45.0% | |
| CGTCCAAAACTGAACTGATG+CGG | - | tig0021196:62431-62450 | None:intergenic | 45.0% | |
| TTAGGGGATGCGTCTATTGA+TGG | + | tig0021196:62537-62556 | Msa1388840:CDS | 45.0% | |
| CTTGTGTTGTGTCCTACTCA+TGG | + | tig0021196:62635-62654 | Msa1388840:intron | 45.0% | |
| TAGGTGGATGATCCTCAAAG+AGG | + | tig0021196:62891-62910 | Msa1388840:intron | 45.0% | |
| AGCACACTGAATCCTCTTTG+AGG | - | tig0021196:62906-62925 | None:intergenic | 45.0% | |
| CAAAGAGGATTCAGTGTGCT+TGG | + | tig0021196:62906-62925 | Msa1388840:CDS | 45.0% | |
| TACATGTCTTCGGTTGGAGT+TGG | - | tig0021196:63165-63184 | None:intergenic | 45.0% | |
| GGCCTGTCCATCAGTTTAAT+AGG | - | tig0021196:63403-63422 | None:intergenic | 45.0% | |
| !! | CTTTAAGGCTTGCCTGTCAT+AGG | - | tig0021196:63424-63443 | None:intergenic | 45.0% |
| TTCTTGGCCAGATACTGAAG+TGG | + | tig0021196:63460-63479 | Msa1388840:CDS | 45.0% | |
| TCTTGGCCAGATACTGAAGT+GGG | + | tig0021196:63461-63480 | Msa1388840:CDS | 45.0% | |
| GCCGTATCCTAAGGGATTAT+GGG | + | tig0021196:63483-63502 | Msa1388840:CDS | 45.0% | |
| CCCCATAATCCCTTAGGATA+CGG | - | tig0021196:63487-63506 | None:intergenic | 45.0% | |
| CCGTATCCTAAGGGATTATG+GGG | + | tig0021196:63484-63503 | Msa1388840:CDS | 45.0% | |
| TCTCTTCCCCATAATCCCTT+AGG | - | tig0021196:63493-63512 | None:intergenic | 45.0% | |
| ATTGTCCAAGCCCGTTTAGA+AGG | + | tig0021196:63539-63558 | Msa1388840:CDS | 45.0% | |
| CTGAATGAGATCCAGCAAGT+CGG | - | tig0021196:63582-63601 | None:intergenic | 45.0% | |
| !! | GACGACCTACTTTTCATTCC+AGG | - | tig0021196:63614-63633 | None:intergenic | 45.0% |
| CCACAAATCAAAAGCCCTCA+AGG | - | tig0021196:65956-65975 | None:intergenic | 45.0% | |
| !!! | CCTTGAGGGCTTTTGATTTG+TGG | + | tig0021196:65953-65972 | Msa1388840:intron | 45.0% |
| TTTGTGGGCTTGCATGAATG+TGG | + | tig0021196:65969-65988 | Msa1388840:intron | 45.0% | |
| TTGTGGGCTTGCATGAATGT+GGG | + | tig0021196:65970-65989 | Msa1388840:intron | 45.0% | |
| ! | ATCATGGGGCCTTGAAGTTT+TGG | - | tig0021196:66044-66063 | None:intergenic | 45.0% |
| !! | TTTTGGTCTTCGAGGATTGG+GGG | - | tig0021196:66087-66106 | None:intergenic | 45.0% |
| !!! | CTAGGGTATTTTGGTCTTCG+AGG | - | tig0021196:66095-66114 | None:intergenic | 45.0% |
| !! | GAAGCCCAACTAGGGTATTT+TGG | - | tig0021196:66104-66123 | None:intergenic | 45.0% |
| TCATAGCAGAAGCCCAACTA+GGG | - | tig0021196:66112-66131 | None:intergenic | 45.0% | |
| !! | AGAAGAGTGTCTTCCTCCAA+AGG | - | tig0021196:66180-66199 | None:intergenic | 45.0% |
| GTTGGATAAAGACAGCAACC+CGG | + | tig0021196:66787-66806 | Msa1388840:CDS | 45.0% | |
| TTGGATAAAGACAGCAACCC+GGG | + | tig0021196:66788-66807 | Msa1388840:CDS | 45.0% | |
| TCTGTCCTCCAAACTGTGAA+AGG | - | tig0021196:66922-66941 | None:intergenic | 45.0% | |
| GGAAATGAAGACATGGGAGA+AGG | + | tig0021196:66975-66994 | Msa1388840:CDS | 45.0% | |
| GCTTTGCACTTCTACTTCTG+CGG | - | tig0021196:67145-67164 | None:intergenic | 45.0% | |
| ! | GAAGTAGAAGTGCAAAGCTC+AGG | + | tig0021196:67147-67166 | Msa1388840:CDS | 45.0% |
| !! | TAAGAAAAAAATTATAATAT+GGG | - | tig0021196:64013-64032 | None:intergenic | 5.0% |
| !! | TTAAGAAAAAAATTATAATA+TGG | - | tig0021196:64014-64033 | None:intergenic | 5.0% |
| !!! | GTTATTTTTTAAAATTAAAT+CGG | - | tig0021196:64621-64640 | None:intergenic | 5.0% |
| !!! | GTTATTTTTTAAAATTAAAT+CGG | - | tig0021196:64621-64640 | None:intergenic | 5.0% |
| !!! | GTTATTTTTTAAAATTAAAT+CGG | - | tig0021196:64621-64640 | None:intergenic | 5.0% |
| ! | TGTGATTCTGGAAGAAGCGG+TGG | - | tig0021196:61214-61233 | None:intergenic | 50.0% |
| !! | TTCCTTGGCAAGTGCTGCTT+CGG | - | tig0021196:61250-61269 | None:intergenic | 50.0% |
| !! | GATTGTACTCTTGGTGCTGC+TGG | + | tig0021196:61411-61430 | Msa1388840:CDS | 50.0% |
| GCCCCTAGTAATTTGGGGAT+TGG | - | tig0021196:62048-62067 | None:intergenic | 50.0% | |
| TCGAGGGCCCCTAGTAATTT+GGG | - | tig0021196:62054-62073 | None:intergenic | 50.0% | |
| TTCGAGGGCCCCTAGTAATT+TGG | - | tig0021196:62055-62074 | None:intergenic | 50.0% | |
| TCTTAATCCCCCAGCTTCGA+GGG | - | tig0021196:62070-62089 | None:intergenic | 50.0% | |
| ! | TGATGGCATCTTGATGGACC+TGG | + | tig0021196:62554-62573 | Msa1388840:CDS | 50.0% |
| ! | GATGGCATCTTGATGGACCT+GGG | + | tig0021196:62555-62574 | Msa1388840:CDS | 50.0% |
| ! | GGATTCAGTGTGCTTGGTGA+TGG | + | tig0021196:62912-62931 | Msa1388840:CDS | 50.0% |
| TGGACCACTTGATATGCGCA+TGG | + | tig0021196:62932-62951 | Msa1388840:CDS | 50.0% | |
| GGATCCATGCGCATATCAAG+TGG | - | tig0021196:62939-62958 | None:intergenic | 50.0% | |
| TGATATGCGCATGGATCCTC+AGG | + | tig0021196:62941-62960 | Msa1388840:CDS | 50.0% | |
| ATACGGCCCACTTCAGTATC+TGG | - | tig0021196:63470-63489 | None:intergenic | 50.0% | |
| TGAAGTGGGCCGTATCCTAA+GGG | + | tig0021196:63475-63494 | Msa1388840:CDS | 50.0% | |
| GGCCGTATCCTAAGGGATTA+TGG | + | tig0021196:63482-63501 | Msa1388840:CDS | 50.0% | |
| ! | ATCCACCTTCTAAACGGGCT+TGG | - | tig0021196:63547-63566 | None:intergenic | 50.0% |
| !! | ACATTCCACTACCGACTTGC+TGG | + | tig0021196:63568-63587 | Msa1388840:CDS | 50.0% |
| AAGGGAAAGTTACGGTGGAG+GGG | - | tig0021196:63767-63786 | None:intergenic | 50.0% | |
| GAAGGGAAAGTTACGGTGGA+GGG | - | tig0021196:63768-63787 | None:intergenic | 50.0% | |
| TGAAGGGAAAGTTACGGTGG+AGG | - | tig0021196:63769-63788 | None:intergenic | 50.0% | |
| CTGTGAAGGGAAAGTTACGG+TGG | - | tig0021196:63772-63791 | None:intergenic | 50.0% | |
| GGATTGGGGGCAATAGTTAG+AGG | - | tig0021196:66074-66093 | None:intergenic | 50.0% | |
| GTCATAGCAGAAGCCCAACT+AGG | - | tig0021196:66113-66132 | None:intergenic | 50.0% | |
| ACTGTAACAGGTGGAAGGCA+AGG | + | tig0021196:66765-66784 | Msa1388840:intron | 50.0% | |
| TAACAGGTGGAAGGCAAGGT+TGG | + | tig0021196:66769-66788 | Msa1388840:intron | 50.0% | |
| !!! | TGTTTTGACTGCCTTGCACC+TGG | + | tig0021196:66876-66895 | Msa1388840:CDS | 50.0% |
| !!! | GTTTTGACTGCCTTGCACCT+GGG | + | tig0021196:66877-66896 | Msa1388840:CDS | 50.0% |
| !! | TTTTGACTGCCTTGCACCTG+GGG | + | tig0021196:66878-66897 | Msa1388840:CDS | 50.0% |
| TCTGGAAGAAGCGGTGGTGA+GGG | - | tig0021196:61208-61227 | None:intergenic | 55.0% | |
| ! | TTCTGGAAGAAGCGGTGGTG+AGG | - | tig0021196:61209-61228 | None:intergenic | 55.0% |
| AACCGAAGCAGCACTTGCCA+AGG | + | tig0021196:61245-61264 | Msa1388840:CDS | 55.0% | |
| CGAGGGCCCCTAGTAATTTG+GGG | - | tig0021196:62053-62072 | None:intergenic | 55.0% | |
| GTCTTAATCCCCCAGCTTCG+AGG | - | tig0021196:62071-62090 | None:intergenic | 55.0% | |
| TGTGCTTAGAGGAACGGGAG+AGG | + | tig0021196:62509-62528 | Msa1388840:CDS | 55.0% | |
| !! | GAACGGGAGAGGAGCACTTA+GGG | + | tig0021196:62520-62539 | Msa1388840:CDS | 55.0% |
| !! | AACGGGAGAGGAGCACTTAG+GGG | + | tig0021196:62521-62540 | Msa1388840:CDS | 55.0% |
| CCTGCATAGATGACATGCCC+AGG | - | tig0021196:62575-62594 | None:intergenic | 55.0% | |
| CCTGGGCATGTCATCTATGC+AGG | + | tig0021196:62572-62591 | Msa1388840:CDS | 55.0% | |
| ! | CTGATGGACAGGCCTATGAC+AGG | + | tig0021196:63409-63428 | Msa1388840:intron | 55.0% |
| CTGAAGTGGGCCGTATCCTA+AGG | + | tig0021196:63474-63493 | Msa1388840:CDS | 55.0% | |
| GTCCAAGCCCGTTTAGAAGG+TGG | + | tig0021196:63542-63561 | Msa1388840:CDS | 55.0% | |
| GAGATCCAGCAAGTCGGTAG+TGG | - | tig0021196:63576-63595 | None:intergenic | 55.0% | |
| CTCATTCAGCGTGTGACTCC+TGG | + | tig0021196:63593-63612 | Msa1388840:CDS | 55.0% | |
| AGGGAAAGTTACGGTGGAGG+GGG | - | tig0021196:63766-63785 | None:intergenic | 55.0% | |
| AGCCCCATTACTATGTGGGC+TGG | + | tig0021196:66016-66035 | Msa1388840:intron | 55.0% | |
| GCCCCATTACTATGTGGGCT+GGG | + | tig0021196:66017-66036 | Msa1388840:intron | 55.0% | |
| CCCCAGCCCACATAGTAATG+GGG | - | tig0021196:66021-66040 | None:intergenic | 55.0% | |
| ! | CCCCATTACTATGTGGGCTG+GGG | + | tig0021196:66018-66037 | Msa1388840:intron | 55.0% |
| GCCCCAGCCCACATAGTAAT+GGG | - | tig0021196:66022-66041 | None:intergenic | 55.0% | |
| TTTGACTGCCTTGCACCTGG+GGG | + | tig0021196:66879-66898 | Msa1388840:CDS | 55.0% | |
| ATAACAGCAAGCCTACCCCC+AGG | - | tig0021196:66897-66916 | None:intergenic | 55.0% | |
| TTACTAGGGGCCCTCGAAGC+TGG | + | tig0021196:62057-62076 | Msa1388840:intron | 60.0% | |
| TACTAGGGGCCCTCGAAGCT+GGG | + | tig0021196:62058-62077 | Msa1388840:intron | 60.0% | |
| TGGGATGGATGTGGACCCTG+TGG | + | tig0021196:62386-62405 | Msa1388840:CDS | 60.0% | |
| GGGATGGATGTGGACCCTGT+GGG | + | tig0021196:62387-62406 | Msa1388840:CDS | 60.0% | |
| GGATGGATGTGGACCCTGTG+GGG | + | tig0021196:62388-62407 | Msa1388840:CDS | 60.0% | |
| !! | GGAACGGGAGAGGAGCACTT+AGG | + | tig0021196:62519-62538 | Msa1388840:CDS | 60.0% |
| TCAAAAGCCCTCAAGGCCCC+AGG | - | tig0021196:65949-65968 | None:intergenic | 60.0% | |
| GGCCCCAGCCCACATAGTAA+TGG | - | tig0021196:66023-66042 | None:intergenic | 60.0% | |
| GGGCTGGGGCCAAAACTTCA+AGG | + | tig0021196:66032-66051 | Msa1388840:intron | 60.0% | |
| ACTAGGGGCCCTCGAAGCTG+GGG | + | tig0021196:62059-62078 | Msa1388840:intron | 65.0% | |
| GGACCCTGTGGGGAGTGACA+CGG | + | tig0021196:62398-62417 | Msa1388840:CDS | 65.0% | |
| ! | GAGCCGTGTCACTCCCCACA+GGG | - | tig0021196:62404-62423 | None:intergenic | 65.0% |
| ! | TGAGCCGTGTCACTCCCCAC+AGG | - | tig0021196:62405-62424 | None:intergenic | 65.0% |
| !!! | TTTTGGGGCCTGGGGCCTTG+AGG | + | tig0021196:65938-65957 | Msa1388840:intron | 65.0% |
| ! | TTTGGGGCCTGGGGCCTTGA+GGG | + | tig0021196:65939-65958 | Msa1388840:intron | 65.0% |
| ACTGCCTTGCACCTGGGGGT+AGG | + | tig0021196:66883-66902 | Msa1388840:CDS | 65.0% | |
| CAAGCCTACCCCCAGGTGCA+AGG | - | tig0021196:66890-66909 | None:intergenic | 65.0% | |
| CTAGGGGCCCTCGAAGCTGG+GGG | + | tig0021196:62060-62079 | Msa1388840:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021196 | gene | 61021 | 67620 | 61021 | ID=Msa1388840;Name=Msa1388840 |
| tig0021196 | mRNA | 61021 | 67620 | 61021 | ID=Msa1388840-mRNA-1;Parent=Msa1388840;Name=Msa1388840-mRNA-1;_AED=0.05;_eAED=0.05;_QI=75|1|1|1|0.8|0.66|6|276|422 |
| tig0021196 | exon | 61021 | 61446 | 61021 | ID=Msa1388840-mRNA-1:exon:11327;Parent=Msa1388840-mRNA-1 |
| tig0021196 | exon | 62351 | 62593 | 62351 | ID=Msa1388840-mRNA-1:exon:11328;Parent=Msa1388840-mRNA-1 |
| tig0021196 | exon | 62894 | 62962 | 62894 | ID=Msa1388840-mRNA-1:exon:11329;Parent=Msa1388840-mRNA-1 |
| tig0021196 | exon | 63431 | 63623 | 63431 | ID=Msa1388840-mRNA-1:exon:11330;Parent=Msa1388840-mRNA-1 |
| tig0021196 | exon | 66775 | 67426 | 66775 | ID=Msa1388840-mRNA-1:exon:11331;Parent=Msa1388840-mRNA-1 |
| tig0021196 | exon | 67584 | 67620 | 67584 | ID=Msa1388840-mRNA-1:exon:11332;Parent=Msa1388840-mRNA-1 |
| tig0021196 | five_prime_UTR | 61021 | 61095 | 61021 | ID=Msa1388840-mRNA-1:five_prime_utr;Parent=Msa1388840-mRNA-1 |
| tig0021196 | CDS | 61096 | 61446 | 61096 | ID=Msa1388840-mRNA-1:cds;Parent=Msa1388840-mRNA-1 |
| tig0021196 | CDS | 62351 | 62593 | 62351 | ID=Msa1388840-mRNA-1:cds;Parent=Msa1388840-mRNA-1 |
| tig0021196 | CDS | 62894 | 62962 | 62894 | ID=Msa1388840-mRNA-1:cds;Parent=Msa1388840-mRNA-1 |
| tig0021196 | CDS | 63431 | 63623 | 63431 | ID=Msa1388840-mRNA-1:cds;Parent=Msa1388840-mRNA-1 |
| tig0021196 | CDS | 66775 | 67187 | 66775 | ID=Msa1388840-mRNA-1:cds;Parent=Msa1388840-mRNA-1 |
| tig0021196 | three_prime_UTR | 67188 | 67426 | 67188 | ID=Msa1388840-mRNA-1:three_prime_utr;Parent=Msa1388840-mRNA-1 |
| tig0021196 | three_prime_UTR | 67584 | 67620 | 67584 | ID=Msa1388840-mRNA-1:three_prime_utr;Parent=Msa1388840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
