Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056050 | XP_013465755.1 | 95.972 | 422 | 12 | 2 | 1 | 422 | 1 | 417 | 0.0 | 821 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056050 | sp|Q6MEG4|RSMH_PARUW | 40.058 | 342 | 171 | 5 | 82 | 422 | 6 | 314 | 2.90e-75 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056050 | A0A072VDX8 | 95.972 | 422 | 12 | 2 | 1 | 422 | 1 | 417 | 0.0 | 821 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039020 | Msa0056050 | 0.808668 | 2.765819e-50 | -8.615850e-47 |
| Msa0049900 | Msa0056050 | 0.985800 | 1.050234e-164 | -8.615850e-47 |
| Msa0056050 | Msa1388840 | 0.926288 | 5.763934e-91 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056050 | MtrunA17_Chr1g0148351 | 95.972 | 422 | 12 | 2 | 1 | 422 | 1 | 417 | 0.0 | 821 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056050 | AT5G10910.1 | 63.130 | 377 | 126 | 5 | 51 | 422 | 66 | 434 | 1.63e-152 | 439 |
Find 110 sgRNAs with CRISPR-Local
Find 340 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATATGTCTTCTGCTTTA+AGG | 0.094672 | 1_2:+11519907 | None:intergenic |
| ACATTTCTTAATATAATTAA+AGG | 0.204441 | 1_2:-11516389 | Msa0056050:CDS |
| CAGAAGACATATTAAATTCT+TGG | 0.206992 | 1_2:-11519899 | Msa0056050:CDS |
| TTTCTTGGTCTTTGTGATTC+TGG | 0.209292 | 1_2:+11522120 | None:intergenic |
| GAACAAACAAGTACACAAAA+TGG | 0.249164 | 1_2:-11522266 | Msa0056050:exon |
| TCTTCTTCTGATGGCGTAAT+TGG | 0.258841 | 1_2:+11516236 | None:intergenic |
| GGCCGTATCCTAAGGGATTA+TGG | 0.262340 | 1_2:-11519861 | Msa0056050:CDS |
| ATCCCGCATCAGTTCAGTTT+TGG | 0.280708 | 1_2:-11520918 | Msa0056050:CDS |
| TGTTATATCCTTTCACAGTT+TGG | 0.342262 | 1_2:-11516432 | Msa0056050:CDS |
| ACATTCCACTACCGACTTGC+TGG | 0.344512 | 1_2:-11519775 | Msa0056050:CDS |
| TTCCTTGGCAAGTGCTGCTT+CGG | 0.352948 | 1_2:+11522096 | None:intergenic |
| CTCATTCAGCGTGTGACTCC+TGG | 0.359723 | 1_2:-11519750 | Msa0056050:CDS |
| AGAATGTGGTGAATGAGTTT+AGG | 0.363731 | 1_2:+11522187 | None:intergenic |
| GTTACTACCACAGTGAGTTT+AGG | 0.366864 | 1_2:-11522293 | Msa0056050:five_prime_UTR |
| CACATCAAATCTGTGCTTAG+AGG | 0.369280 | 1_2:-11520845 | Msa0056050:CDS |
| ATTATGGGGAAGAGAGTAAT+TGG | 0.369556 | 1_2:-11519845 | Msa0056050:CDS |
| GAAAGAAGTTAAGGAAGAAT+TGG | 0.378340 | 1_2:+11521958 | None:intergenic |
| TCTTTCGTTGATTGTACTCT+TGG | 0.378918 | 1_2:-11521941 | Msa0056050:CDS |
| AGAGTTGCAATAATGATCTT+AGG | 0.381830 | 1_2:-11516343 | Msa0056050:CDS |
| TGTTATGCTTTCTGAAGTAT+TGG | 0.385927 | 1_2:-11521990 | Msa0056050:CDS |
| ATACGGCCCACTTCAGTATC+TGG | 0.387830 | 1_2:+11519876 | None:intergenic |
| AATACTTCAGAAAGCATAAC+AGG | 0.389337 | 1_2:+11521992 | None:intergenic |
| GAACGGGAGAGGAGCACTTA+GGG | 0.398110 | 1_2:-11520823 | Msa0056050:CDS |
| CAAGTAATGCCTGGATCAAA+TGG | 0.400903 | 1_2:-11516278 | Msa0056050:CDS |
| GAAGTAGAAGTGCAAAGCTC+AGG | 0.404929 | 1_2:-11516196 | Msa0056050:CDS |
| CTCATCAGTAGAAAAGTTCA+AGG | 0.414662 | 1_2:-11516066 | Msa0056050:three_prime_UTR |
| TTAGGGGATGCGTCTATTGA+TGG | 0.431436 | 1_2:-11520806 | Msa0056050:CDS |
| GTTCTGAGATTTGAAGAAGA+AGG | 0.436928 | 1_2:+11522160 | None:intergenic |
| TGAAAGTGTTTACTGTGTTA+AGG | 0.437606 | 1_2:-11520877 | Msa0056050:CDS |
| AAGTTCTCCTCTTCTTCTGA+TGG | 0.438853 | 1_2:+11516227 | None:intergenic |
| AAATCTGTGCTTAGAGGAAC+GGG | 0.439542 | 1_2:-11520839 | Msa0056050:CDS |
| GATTGTACTCTTGGTGCTGC+TGG | 0.441916 | 1_2:-11521932 | Msa0056050:CDS |
| ACAATCAACGAAAGAAGTTA+AGG | 0.442987 | 1_2:+11521949 | None:intergenic |
| GCCGTATCCTAAGGGATTAT+GGG | 0.446424 | 1_2:-11519860 | Msa0056050:CDS |
| TACCACAGTGAGTTTAGGTC+TGG | 0.451776 | 1_2:-11522288 | Msa0056050:five_prime_UTR |
| ATGTAATCCACCTTCTAAAC+GGG | 0.452823 | 1_2:+11519794 | None:intergenic |
| GTGGTGAATGAGTTTAGGTT+TGG | 0.453543 | 1_2:+11522192 | None:intergenic |
| TGAATGGAATAGGTGATTAG+AGG | 0.456208 | 1_2:-11521004 | Msa0056050:intron |
| GGCAGTCAAAACAAGAATAG+AGG | 0.456791 | 1_2:+11516477 | None:intergenic |
| TGATGGCATCTTGATGGACC+TGG | 0.458496 | 1_2:-11520789 | Msa0056050:CDS |
| TCTCTTCCCCATAATCCCTT+AGG | 0.460827 | 1_2:+11519853 | None:intergenic |
| GAAATGAAGACATGGGAGAA+GGG | 0.463988 | 1_2:-11516367 | Msa0056050:CDS |
| ATTGTCCAAGCCCGTTTAGA+AGG | 0.466264 | 1_2:-11519804 | Msa0056050:CDS |
| AATGTAATCCACCTTCTAAA+CGG | 0.467914 | 1_2:+11519793 | None:intergenic |
| GGAACGGGAGAGGAGCACTT+AGG | 0.470617 | 1_2:-11520824 | Msa0056050:CDS |
| CTGAAGTGGGCCGTATCCTA+AGG | 0.471585 | 1_2:-11519869 | Msa0056050:CDS |
| CCAACAAAATACTTCAGCTC+TGG | 0.471925 | 1_2:+11520977 | None:intergenic |
| AACAAACAAGTACACAAAAT+GGG | 0.481063 | 1_2:-11522265 | Msa0056050:exon |
| AAGAAGAAGGAGAGAGAATG+TGG | 0.481759 | 1_2:+11522173 | None:intergenic |
| TGATATGCGCATGGATCCTC+AGG | 0.483397 | 1_2:-11520402 | Msa0056050:intron |
| GTCTATTGATGGCATCTTGA+TGG | 0.483474 | 1_2:-11520795 | Msa0056050:CDS |
| AGAATAATTCCATTTGATCC+AGG | 0.483518 | 1_2:+11516269 | None:intergenic |
| CCTGGGCATGTCATCTATGC+AGG | 0.484557 | 1_2:-11520771 | Msa0056050:intron |
| ATCCACCTTCTAAACGGGCT+TGG | 0.488947 | 1_2:+11519799 | None:intergenic |
| GAGATCCAGCAAGTCGGTAG+TGG | 0.489155 | 1_2:+11519770 | None:intergenic |
| GGGATGGATGTGGACCCTGT+GGG | 0.491622 | 1_2:-11520956 | Msa0056050:CDS |
| TATATCCTTTCACAGTTTGG+AGG | 0.492823 | 1_2:-11516429 | Msa0056050:CDS |
| CCCCATAATCCCTTAGGATA+CGG | 0.499959 | 1_2:+11519859 | None:intergenic |
| TTCTCAATGCTTGAAATACC+CGG | 0.500262 | 1_2:+11516537 | None:intergenic |
| CAAAGAGGATTCAGTGTGCT+TGG | 0.501712 | 1_2:-11520437 | Msa0056050:CDS |
| AAATGAAGACATGGGAGAAG+GGG | 0.519276 | 1_2:-11516366 | Msa0056050:CDS |
| AGCACACTGAATCCTCTTTG+AGG | 0.522390 | 1_2:+11520440 | None:intergenic |
| TCTGTCCTCCAAACTGTGAA+AGG | 0.522906 | 1_2:+11516424 | None:intergenic |
| TGGGATGGATGTGGACCCTG+TGG | 0.531423 | 1_2:-11520957 | Msa0056050:CDS |
| TGGATAAGACAAGTAATGCC+TGG | 0.535917 | 1_2:-11516287 | Msa0056050:CDS |
| TCTGGAAGAAGCGGTGGTGA+GGG | 0.537069 | 1_2:+11522138 | None:intergenic |
| TAACAGGTGGAAGGCAAGGT+TGG | 0.538141 | 1_2:-11516574 | Msa0056050:intron |
| GGAAATGAAGACATGGGAGA+AGG | 0.547942 | 1_2:-11516368 | Msa0056050:CDS |
| ATGATAGAAACTAACATTGG+TGG | 0.548892 | 1_2:+11521904 | None:intergenic |
| GGATTCAGTGTGCTTGGTGA+TGG | 0.548903 | 1_2:-11520431 | Msa0056050:CDS |
| GTCCAAGCCCGTTTAGAAGG+TGG | 0.550656 | 1_2:-11519801 | Msa0056050:CDS |
| TTCTGGAAGAAGCGGTGGTG+AGG | 0.550767 | 1_2:+11522137 | None:intergenic |
| CAAATCTGTGCTTAGAGGAA+CGG | 0.551524 | 1_2:-11520840 | Msa0056050:CDS |
| TGAGCCGTGTCACTCCCCAC+AGG | 0.557923 | 1_2:+11520941 | None:intergenic |
| GTCCAAAACTGAACTGATGC+GGG | 0.565422 | 1_2:+11520916 | None:intergenic |
| AACCGAAGCAGCACTTGCCA+AGG | 0.567853 | 1_2:-11522098 | Msa0056050:CDS |
| GCAGTCAAAACAAGAATAGA+GGG | 0.571058 | 1_2:+11516478 | None:intergenic |
| TTGGATAAAGACAGCAACCC+GGG | 0.572572 | 1_2:-11516555 | Msa0056050:CDS |
| GGATGGATGTGGACCCTGTG+GGG | 0.572979 | 1_2:-11520955 | Msa0056050:CDS |
| ACTGTAACAGGTGGAAGGCA+AGG | 0.580203 | 1_2:-11516578 | Msa0056050:intron |
| ATTAAAGGAAATGAAGACAT+GGG | 0.581318 | 1_2:-11516374 | Msa0056050:CDS |
| AATTACGCCATCAGAAGAAG+AGG | 0.582706 | 1_2:-11516234 | Msa0056050:CDS |
| TGATGAACTGAAGACTCTTG+AGG | 0.586961 | 1_2:-11516504 | Msa0056050:CDS |
| AAGTAGAAGTGCAAAGCTCA+GGG | 0.588150 | 1_2:-11516195 | Msa0056050:CDS |
| TAATTATTAAAGCAAAGATA+CGG | 0.594374 | 1_2:+11516095 | None:intergenic |
| AATTAAAGGAAATGAAGACA+TGG | 0.596968 | 1_2:-11516375 | Msa0056050:CDS |
| CGTCCAAAACTGAACTGATG+CGG | 0.599707 | 1_2:+11520915 | None:intergenic |
| TCTCAATGCTTGAAATACCC+GGG | 0.602177 | 1_2:+11516538 | None:intergenic |
| CCTGCATAGATGACATGCCC+AGG | 0.608670 | 1_2:+11520771 | None:intergenic |
| TAGGTGGATGATCCTCAAAG+AGG | 0.608837 | 1_2:-11520452 | Msa0056050:CDS |
| TGAAGTGGGCCGTATCCTAA+GGG | 0.612320 | 1_2:-11519868 | Msa0056050:CDS |
| TGTGCTTAGAGGAACGGGAG+AGG | 0.612987 | 1_2:-11520834 | Msa0056050:CDS |
| ATTACACTGTAACAGGTGGA+AGG | 0.615852 | 1_2:-11516583 | Msa0056050:intron |
| GCTTTGCACTTCTACTTCTG+CGG | 0.620414 | 1_2:+11516201 | None:intergenic |
| AACGGGAGAGGAGCACTTAG+GGG | 0.624347 | 1_2:-11520822 | Msa0056050:CDS |
| GTTGGATAAAGACAGCAACC+CGG | 0.630481 | 1_2:-11516556 | Msa0056050:CDS |
| CTTTGTGATTCTGGAAGAAG+CGG | 0.636349 | 1_2:+11522129 | None:intergenic |
| GAGCCGTGTCACTCCCCACA+GGG | 0.640379 | 1_2:+11520942 | None:intergenic |
| GATGGCATCTTGATGGACCT+GGG | 0.642501 | 1_2:-11520788 | Msa0056050:CDS |
| TTCTTGGCCAGATACTGAAG+TGG | 0.644803 | 1_2:-11519883 | Msa0056050:CDS |
| GGACCCTGTGGGGAGTGACA+CGG | 0.650344 | 1_2:-11520945 | Msa0056050:CDS |
| CCGTATCCTAAGGGATTATG+GGG | 0.656929 | 1_2:-11519859 | Msa0056050:CDS |
| TGGACCACTTGATATGCGCA+TGG | 0.657010 | 1_2:-11520411 | Msa0056050:CDS |
| TGTGATTCTGGAAGAAGCGG+TGG | 0.659825 | 1_2:+11522132 | None:intergenic |
| GGATCCATGCGCATATCAAG+TGG | 0.659855 | 1_2:+11520407 | None:intergenic |
| TCTTGGCCAGATACTGAAGT+GGG | 0.661677 | 1_2:-11519882 | Msa0056050:CDS |
| CTGAATGAGATCCAGCAAGT+CGG | 0.673086 | 1_2:+11519764 | None:intergenic |
| TTCTGATAAAGAACTCGACA+AGG | 0.673094 | 1_2:-11522059 | Msa0056050:CDS |
| TTCCAGACCTAAACTCACTG+TGG | 0.693459 | 1_2:+11522286 | None:intergenic |
| TTTGACTGCCTTGCACCTGG+GGG | 0.710830 | 1_2:-11516464 | Msa0056050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAGAGTTAAATAATTT+TGG | + | chr1_2:11516441-11516460 | None:intergenic | 10.0% |
| !!! | ATACAAAGTATATTTTTTTA+TGG | + | chr1_2:11516817-11516836 | None:intergenic | 10.0% |
| !!! | AAATAAATAGATTTTATAGT+GGG | + | chr1_2:11518698-11518717 | None:intergenic | 10.0% |
| !! | TATAAAATCTATTTATTTGT+GGG | - | chr1_2:11518700-11518719 | Msa0056050:intron | 10.0% |
| !! | AAGAAAAAAATTATAATATG+GGG | + | chr1_2:11518736-11518755 | None:intergenic | 10.0% |
| !!! | AAAATGTTTATAGAAATTTT+GGG | - | chr1_2:11520646-11520665 | Msa0056050:intron | 10.0% |
| !! | ACATTTCTTAATATAATTAA+AGG | - | chr1_2:11521678-11521697 | Msa0056050:intron | 10.0% |
| !!! | CATATTTTTTTTTTTTTTGA+AGG | + | chr1_2:11522088-11522107 | None:intergenic | 10.0% |
| !! | TAATGACATGAAAATTTATA+AGG | + | chr1_2:11516842-11516861 | None:intergenic | 15.0% |
| !!! | AAGATTAAACAAAATCATTT+TGG | + | chr1_2:11517502-11517521 | None:intergenic | 15.0% |
| !!! | AATGATTTTGTTTAATCTTA+TGG | - | chr1_2:11517503-11517522 | Msa0056050:intron | 15.0% |
| !!! | AAATAATTCTTTTCAATTAG+GGG | + | chr1_2:11518666-11518685 | None:intergenic | 15.0% |
| !!! | CAAATAATTCTTTTCAATTA+GGG | + | chr1_2:11518667-11518686 | None:intergenic | 15.0% |
| !! | CTAATTGAAAAGAATTATTT+GGG | - | chr1_2:11518666-11518685 | Msa0056050:intron | 15.0% |
| !! | TAATTGAAAAGAATTATTTG+GGG | - | chr1_2:11518667-11518686 | Msa0056050:intron | 15.0% |
| !!! | CAAATAAATAGATTTTATAG+TGG | + | chr1_2:11518699-11518718 | None:intergenic | 15.0% |
| !! | CTATAAAATCTATTTATTTG+TGG | - | chr1_2:11518699-11518718 | Msa0056050:intron | 15.0% |
| !!! | GTTGTTTTTTAAAATGAAAT+CGG | - | chr1_2:11520313-11520332 | Msa0056050:intron | 15.0% |
| !!! | GAAAATGTTTATAGAAATTT+TGG | - | chr1_2:11520645-11520664 | Msa0056050:intron | 15.0% |
| !!! | AAATGTTTATAGAAATTTTG+GGG | - | chr1_2:11520647-11520666 | Msa0056050:intron | 15.0% |
| !! | TAATTATTAAAGCAAAGATA+CGG | + | chr1_2:11521975-11521994 | None:intergenic | 15.0% |
| !!! | AAAAAAATATGACGTTTTTT+TGG | - | chr1_2:11522097-11522116 | Msa0056050:CDS | 15.0% |
| !!! | AGATATGTGTATTTTTTTTA+AGG | - | chr1_2:11522160-11522179 | Msa0056050:CDS | 15.0% |
| !!! | GATATGTGTATTTTTTTTAA+GGG | - | chr1_2:11522161-11522180 | Msa0056050:CDS | 15.0% |
| !! | TTTATGATAGAAACTAACAT+TGG | + | chr1_2:11516169-11516188 | None:intergenic | 20.0% |
| !! | AAATACAATTATCCAATCAA+CGG | - | chr1_2:11516564-11516583 | Msa0056050:CDS | 20.0% |
| !!! | AATTTTCATGTCATTATAAG+AGG | - | chr1_2:11516846-11516865 | Msa0056050:intron | 20.0% |
| !!! | GAACATTTTTACATAGTATT+TGG | + | chr1_2:11516959-11516978 | None:intergenic | 20.0% |
| !! | AATGTATCATATATAAAGCA+GGG | + | chr1_2:11517329-11517348 | None:intergenic | 20.0% |
| !! | AAAAAGATTAGACAAAATCA+CGG | + | chr1_2:11517470-11517489 | None:intergenic | 20.0% |
| !! | CCTAAAACAAAAAACATATA+AGG | + | chr1_2:11517599-11517618 | None:intergenic | 20.0% |
| !!! | CCTTATATGTTTTTTGTTTT+AGG | - | chr1_2:11517596-11517615 | Msa0056050:intron | 20.0% |
| !!! | TATATGTTTTTTGTTTTAGG+TGG | - | chr1_2:11517599-11517618 | Msa0056050:intron | 20.0% |
| !!! | ATTTCTATAATACAGTTTTG+TGG | - | chr1_2:11517914-11517933 | Msa0056050:intron | 20.0% |
| !! | ATTCATAATATGCTATAACA+TGG | - | chr1_2:11518454-11518473 | Msa0056050:intron | 20.0% |
| !!! | AATAATTCTTTTCAATTAGG+GGG | + | chr1_2:11518665-11518684 | None:intergenic | 20.0% |
| !!! | CCAAATAATTCTTTTCAATT+AGG | + | chr1_2:11518668-11518687 | None:intergenic | 20.0% |
| !! | CCTAATTGAAAAGAATTATT+TGG | - | chr1_2:11518665-11518684 | Msa0056050:intron | 20.0% |
| !!! | GTATAAATAAGTTGTTTTGA+AGG | - | chr1_2:11520105-11520124 | Msa0056050:intron | 20.0% |
| !! | TAAAAATCCACAAGATTAAA+AGG | + | chr1_2:11520720-11520739 | None:intergenic | 20.0% |
| !! | TACAAATTCAATTTCAAAGA+TGG | - | chr1_2:11520865-11520884 | Msa0056050:CDS | 20.0% |
| !!! | CAATACAATTGTTTTTTCTT+GGG | - | chr1_2:11520939-11520958 | Msa0056050:CDS | 20.0% |
| !!! | AAGAATAAAGTATTTATGCA+GGG | - | chr1_2:11521196-11521215 | Msa0056050:intron | 20.0% |
| ! | AACAAACAAGTACACAAAAT+GGG | - | chr1_2:11515802-11515821 | Msa0056050:intron | 25.0% |
| !! | TTCTTCTTATTTGTGTATTG+TGG | - | chr1_2:11516205-11516224 | Msa0056050:CDS | 25.0% |
| !! | CTATTTTCACAAATTCTCTT+AGG | + | chr1_2:11516335-11516354 | None:intergenic | 25.0% |
| !! | TCTAAGATAGCTTATGAAAA+CGG | - | chr1_2:11516402-11516421 | Msa0056050:CDS | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | - | chr1_2:11516515-11516534 | Msa0056050:CDS | 25.0% |
| ! | CTATATAATATTCCGTTGAT+TGG | + | chr1_2:11516579-11516598 | None:intergenic | 25.0% |
| ! | GAATATTATATAGCCAAAGA+TGG | - | chr1_2:11516586-11516605 | Msa0056050:intron | 25.0% |
| ! | ATGTACTTTGTATAATCAAG+TGG | - | chr1_2:11516654-11516673 | Msa0056050:intron | 25.0% |
| ! | TTCAATTTCTTGAAAGGAAT+GGG | + | chr1_2:11516883-11516902 | None:intergenic | 25.0% |
| ! | ATTCAATTTCTTGAAAGGAA+TGG | + | chr1_2:11516884-11516903 | None:intergenic | 25.0% |
| !!! | CTTGTTATTGAATGATTGAA+TGG | - | chr1_2:11517047-11517066 | Msa0056050:intron | 25.0% |
| ! | ATTGAATGATTGAATGGAAT+AGG | - | chr1_2:11517053-11517072 | Msa0056050:intron | 25.0% |
| !! | TTACTGTGTTAAGGAATTTT+AGG | - | chr1_2:11517199-11517218 | Msa0056050:intron | 25.0% |
| ! | CAATGTATCATATATAAAGC+AGG | + | chr1_2:11517330-11517349 | None:intergenic | 25.0% |
| ! | ACAAACAATAAGAAAACTTC+AGG | + | chr1_2:11517575-11517594 | None:intergenic | 25.0% |
| ! | CAATGAAAATTTATGCTCTT+TGG | - | chr1_2:11517712-11517731 | Msa0056050:intron | 25.0% |
| !!! | GTCTCTTTTCTTAATTTGAA+TGG | - | chr1_2:11517862-11517881 | Msa0056050:intron | 25.0% |
| ! | AATATTACAATGAGGTGAAA+AGG | + | chr1_2:11518014-11518033 | None:intergenic | 25.0% |
| ! | CACTCAAAAATATTACAATG+AGG | + | chr1_2:11518022-11518041 | None:intergenic | 25.0% |
| ! | TTAAGTAAATAAGTTACGTG+TGG | - | chr1_2:11518051-11518070 | Msa0056050:intron | 25.0% |
| ! | TTTCTTTCCTATTAAACTGA+TGG | - | chr1_2:11518117-11518136 | Msa0056050:intron | 25.0% |
| ! | TTAATATGTCTTCTGCTTTA+AGG | + | chr1_2:11518163-11518182 | None:intergenic | 25.0% |
| ! | CAGAAGACATATTAAATTCT+TGG | - | chr1_2:11518168-11518187 | Msa0056050:intron | 25.0% |
| !!! | TTATAATATGGGGCTTTATT+AGG | + | chr1_2:11518726-11518745 | None:intergenic | 25.0% |
| !!! | TTGTTTTGAATAAGCTGTTT+TGG | + | chr1_2:11520410-11520429 | None:intergenic | 25.0% |
| !!! | GCAATACAATTGTTTTTTCT+TGG | - | chr1_2:11520938-11520957 | Msa0056050:CDS | 25.0% |
| ! | TTTGTAAAGTAAGCAATCAA+AGG | + | chr1_2:11521121-11521140 | None:intergenic | 25.0% |
| ! | CACTTCTCAAATTCAAAATA+TGG | + | chr1_2:11521153-11521172 | None:intergenic | 25.0% |
| ! | GCATAAATACTTTATTCTTC+TGG | + | chr1_2:11521195-11521214 | None:intergenic | 25.0% |
| !! | GAAGAATAAAGTATTTATGC+AGG | - | chr1_2:11521195-11521214 | Msa0056050:intron | 25.0% |
| !!! | AATTTTGATTACACTGTAAC+AGG | - | chr1_2:11521477-11521496 | Msa0056050:intron | 25.0% |
| ! | AATTAAAGGAAATGAAGACA+TGG | - | chr1_2:11521692-11521711 | Msa0056050:intron | 25.0% |
| ! | ATTAAAGGAAATGAAGACAT+GGG | - | chr1_2:11521693-11521712 | Msa0056050:intron | 25.0% |
| ! | AAATCAAAGAAAAAGAAGCA+TGG | - | chr1_2:11521760-11521779 | Msa0056050:intron | 25.0% |
| ! | ATATTTATCCCTATATCTCT+TGG | + | chr1_2:11522222-11522241 | None:intergenic | 25.0% |
| ! | AATATACACGATATCACTTA+AGG | - | chr1_2:11522237-11522256 | Msa0056050:CDS | 25.0% |
| GAACAAACAAGTACACAAAA+TGG | - | chr1_2:11515801-11515820 | Msa0056050:intron | 30.0% | |
| ! | AATACTTCAGAAAGCATAAC+AGG | + | chr1_2:11516078-11516097 | None:intergenic | 30.0% |
| !! | TGTTATGCTTTCTGAAGTAT+TGG | - | chr1_2:11516077-11516096 | Msa0056050:three_prime_UTR | 30.0% |
| GAAAGAAGTTAAGGAAGAAT+TGG | + | chr1_2:11516112-11516131 | None:intergenic | 30.0% | |
| ACAATCAACGAAAGAAGTTA+AGG | + | chr1_2:11516121-11516140 | None:intergenic | 30.0% | |
| ATGATAGAAACTAACATTGG+TGG | + | chr1_2:11516166-11516185 | None:intergenic | 30.0% | |
| AATGTGAATGCATAGAACAT+AGG | + | chr1_2:11516541-11516560 | None:intergenic | 30.0% | |
| TAATCAGATTTCACCATCTT+TGG | + | chr1_2:11516602-11516621 | None:intergenic | 30.0% | |
| !!! | CTTTTAAAGTCAAATCCATC+TGG | - | chr1_2:11516685-11516704 | Msa0056050:intron | 30.0% |
| GTGTGATTCAATTTCTTGAA+AGG | + | chr1_2:11516889-11516908 | None:intergenic | 30.0% | |
| !! | TGAAAGTGTTTACTGTGTTA+AGG | - | chr1_2:11517190-11517209 | Msa0056050:intron | 30.0% |
| ! | TGCTATTTAAAACCATGAGT+AGG | + | chr1_2:11517374-11517393 | None:intergenic | 30.0% |
| TTTGTTTAATCTTATGGTGC+TGG | - | chr1_2:11517509-11517528 | Msa0056050:intron | 30.0% | |
| ! | CAATTTTCTGATCGATTACT+AGG | - | chr1_2:11517781-11517800 | Msa0056050:intron | 30.0% |
| ! | TTACTAGGAGTAAAAAGTGT+TGG | - | chr1_2:11517796-11517815 | Msa0056050:intron | 30.0% |
| GTTAATGTTGTAGCATTGTA+TGG | - | chr1_2:11517825-11517844 | Msa0056050:intron | 30.0% | |
| GAAATAGCAATACATGTCTT+CGG | + | chr1_2:11517899-11517918 | None:intergenic | 30.0% | |
| AATGTAATCCACCTTCTAAA+CGG | + | chr1_2:11518277-11518296 | None:intergenic | 30.0% | |
| GAAAATGCAATAGACATTTG+TGG | + | chr1_2:11518538-11518557 | None:intergenic | 30.0% | |
| TCCTAATGAAAATTCCTACT+TGG | - | chr1_2:11518558-11518577 | Msa0056050:intron | 30.0% | |
| ! | ACCAAGTAGGAATTTTCATT+AGG | + | chr1_2:11518562-11518581 | None:intergenic | 30.0% |
| !! | TTAAGTGGGCTTTGAAATTT+GGG | + | chr1_2:11518611-11518630 | None:intergenic | 30.0% |
| !! | TTTAAGTGGGCTTTGAAATT+TGG | + | chr1_2:11518612-11518631 | None:intergenic | 30.0% |
| !! | TTTAATTTAGTGGGCTTAGT+GGG | + | chr1_2:11518641-11518660 | None:intergenic | 30.0% |
| !!! | AATAGATTTTATAGTGGGCT+TGG | + | chr1_2:11518693-11518712 | None:intergenic | 30.0% |
| TGTTGCAATTTGAGTCAATA+TGG | + | chr1_2:11520974-11520993 | None:intergenic | 30.0% | |
| ! | TTTTGCATGATGTTACAGAT+AGG | - | chr1_2:11521024-11521043 | Msa0056050:intron | 30.0% |
| TTACAGATAGGTCTTTCAAA+GGG | - | chr1_2:11521036-11521055 | Msa0056050:intron | 30.0% | |
| !!! | AGGTATATTTCCTAGTTTTG+AGG | + | chr1_2:11521101-11521120 | None:intergenic | 30.0% |
| ! | AATTTGAGAAGTGTAGTAGT+TGG | - | chr1_2:11521160-11521179 | Msa0056050:intron | 30.0% |
| ! | TCAGACCACAAATTTTTACA+TGG | - | chr1_2:11521424-11521443 | Msa0056050:intron | 30.0% |
| GCTATCCATGTAAAAATTTG+TGG | + | chr1_2:11521432-11521451 | None:intergenic | 30.0% | |
| TGTTATATCCTTTCACAGTT+TGG | - | chr1_2:11521635-11521654 | Msa0056050:intron | 30.0% | |
| AGAGTTGCAATAATGATCTT+AGG | - | chr1_2:11521724-11521743 | Msa0056050:intron | 30.0% | |
| AGAATAATTCCATTTGATCC+AGG | + | chr1_2:11521801-11521820 | None:intergenic | 30.0% | |
| AAGAAATGTCCAAGAGATAT+AGG | - | chr1_2:11522210-11522229 | Msa0056050:CDS | 30.0% | |
| AGAAATGTCCAAGAGATATA+GGG | - | chr1_2:11522211-11522230 | Msa0056050:CDS | 30.0% | |
| AGAATGTGGTGAATGAGTTT+AGG | + | chr1_2:11515883-11515902 | None:intergenic | 35.0% | |
| !! | GTTCTGAGATTTGAAGAAGA+AGG | + | chr1_2:11515910-11515929 | None:intergenic | 35.0% |
| ! | TTTCTTGGTCTTTGTGATTC+TGG | + | chr1_2:11515950-11515969 | None:intergenic | 35.0% |
| TTCTGATAAAGAACTCGACA+AGG | - | chr1_2:11516008-11516027 | Msa0056050:three_prime_UTR | 35.0% | |
| ! | TCTTTCGTTGATTGTACTCT+TGG | - | chr1_2:11516126-11516145 | Msa0056050:three_prime_UTR | 35.0% |
| CAAAACAAGCCTAATCCAAA+CGG | - | chr1_2:11516307-11516326 | Msa0056050:CDS | 35.0% | |
| AAAACAAGCCTAATCCAAAC+GGG | - | chr1_2:11516308-11516327 | Msa0056050:CDS | 35.0% | |
| TTTCAGCTAGGAATCAAACT+CGG | + | chr1_2:11516716-11516735 | None:intergenic | 35.0% | |
| TTCCTAGCTGAAACAATTCT+TGG | - | chr1_2:11516723-11516742 | Msa0056050:intron | 35.0% | |
| TTGGTTGAAGAGAAATAGAG+AGG | + | chr1_2:11516940-11516959 | None:intergenic | 35.0% | |
| TGAATGGAATAGGTGATTAG+AGG | - | chr1_2:11517063-11517082 | Msa0056050:intron | 35.0% | |
| !! | CAGAGCTGAAGTATTTTGTT+GGG | - | chr1_2:11517091-11517110 | Msa0056050:intron | 35.0% |
| ! | TGCTGAACTGCTATATTTTG+TGG | - | chr1_2:11517417-11517436 | Msa0056050:intron | 35.0% |
| AGGTAGACTTTAATGCGTTT+AGG | - | chr1_2:11517685-11517704 | Msa0056050:intron | 35.0% | |
| ! | ATTTAGACAGAAGCACAAGT+CGG | + | chr1_2:11517949-11517968 | None:intergenic | 35.0% |
| ! | TTCCTATTAAACTGATGGAC+AGG | - | chr1_2:11518122-11518141 | Msa0056050:intron | 35.0% |
| ATTATGGGGAAGAGAGTAAT+TGG | - | chr1_2:11518222-11518241 | Msa0056050:intron | 35.0% | |
| ATGTAATCCACCTTCTAAAC+GGG | + | chr1_2:11518276-11518295 | None:intergenic | 35.0% | |
| !!! | TGCAGGCTCTATTTTTTTCT+AGG | - | chr1_2:11518375-11518394 | Msa0056050:intron | 35.0% |
| !! | TAAGTGGGCTTTGAAATTTG+GGG | + | chr1_2:11518610-11518629 | None:intergenic | 35.0% |
| !! | TTAATTTAGTGGGCTTAGTG+GGG | + | chr1_2:11518640-11518659 | None:intergenic | 35.0% |
| !! | CTTTAATTTAGTGGGCTTAG+TGG | + | chr1_2:11518642-11518661 | None:intergenic | 35.0% |
| ! | TTAGGGGGCTTTAATTTAGT+GGG | + | chr1_2:11518650-11518669 | None:intergenic | 35.0% |
| ! | ATTAGGGGGCTTTAATTTAG+TGG | + | chr1_2:11518651-11518670 | None:intergenic | 35.0% |
| !!! | TTTATAGAAATTTTGGGGCC+TGG | - | chr1_2:11520652-11520671 | Msa0056050:intron | 35.0% |
| !!! | TTATAGAAATTTTGGGGCCT+GGG | - | chr1_2:11520653-11520672 | Msa0056050:intron | 35.0% |
| ! | TTTTAAGCCCCATTACTATG+TGG | - | chr1_2:11520735-11520754 | Msa0056050:intron | 35.0% |
| TTTAAGCCCCATTACTATGT+GGG | - | chr1_2:11520736-11520755 | Msa0056050:intron | 35.0% | |
| !! | TTAGAGGTGTCAATATCATG+GGG | + | chr1_2:11520782-11520801 | None:intergenic | 35.0% |
| !! | GTTAGAGGTGTCAATATCAT+GGG | + | chr1_2:11520783-11520802 | None:intergenic | 35.0% |
| !! | AGTTAGAGGTGTCAATATCA+TGG | + | chr1_2:11520784-11520803 | None:intergenic | 35.0% |
| !!! | TATTTTGGTCTTCGAGGATT+GGG | + | chr1_2:11520813-11520832 | None:intergenic | 35.0% |
| AAGACCAAAATACCCTAGTT+GGG | - | chr1_2:11520821-11520840 | Msa0056050:CDS | 35.0% | |
| TGGTTCAAACAAGAAACCTT+TGG | - | chr1_2:11520885-11520904 | Msa0056050:CDS | 35.0% | |
| TTCAAACAAGAAACCTTTGG+AGG | - | chr1_2:11520888-11520907 | Msa0056050:CDS | 35.0% | |
| GTTACAGATAGGTCTTTCAA+AGG | - | chr1_2:11521035-11521054 | Msa0056050:intron | 35.0% | |
| ! | TAAAGTATTTATGCAGGGTG+AGG | - | chr1_2:11521201-11521220 | Msa0056050:intron | 35.0% |
| ! | CAGAAAGCATATACAAGTAG+TGG | - | chr1_2:11521241-11521260 | Msa0056050:intron | 35.0% |
| ! | TTCTTGACTGACATTTTTGC+TGG | - | chr1_2:11521370-11521389 | Msa0056050:intron | 35.0% |
| CGAATTCATAACACAAGCTT+TGG | - | chr1_2:11521400-11521419 | Msa0056050:intron | 35.0% | |
| TTTGATTACACTGTAACAGG+TGG | - | chr1_2:11521480-11521499 | Msa0056050:intron | 35.0% | |
| TTCTCAATGCTTGAAATACC+CGG | + | chr1_2:11521533-11521552 | None:intergenic | 35.0% | |
| GCAGTCAAAACAAGAATAGA+GGG | + | chr1_2:11521592-11521611 | None:intergenic | 35.0% | |
| TATATCCTTTCACAGTTTGG+AGG | - | chr1_2:11521638-11521657 | Msa0056050:intron | 35.0% | |
| CTCATCAGTAGAAAAGTTCA+AGG | - | chr1_2:11522001-11522020 | Msa0056050:CDS | 35.0% | |
| ! | CTTTGAATGACTTGCACATA+CGG | - | chr1_2:11522291-11522310 | Msa0056050:five_prime_UTR | 35.0% |
| GTTACTACCACAGTGAGTTT+AGG | - | chr1_2:11515774-11515793 | Msa0056050:intron | 40.0% | |
| ! | GTGGTGAATGAGTTTAGGTT+TGG | + | chr1_2:11515878-11515897 | None:intergenic | 40.0% |
| AAGAAGAAGGAGAGAGAATG+TGG | + | chr1_2:11515897-11515916 | None:intergenic | 40.0% | |
| ! | CTTTGTGATTCTGGAAGAAG+CGG | + | chr1_2:11515941-11515960 | None:intergenic | 40.0% |
| AAATTCTCTTAGGTCCCGTT+TGG | + | chr1_2:11516325-11516344 | None:intergenic | 40.0% | |
| CATAGAACATAGGCCATGTT+TGG | + | chr1_2:11516531-11516550 | None:intergenic | 40.0% | |
| AGCCAAGAATTGTTTCAGCT+AGG | + | chr1_2:11516728-11516747 | None:intergenic | 40.0% | |
| TAGTAATTTGGGGATTGGGT+GGG | + | chr1_2:11516767-11516786 | None:intergenic | 40.0% | |
| ACCCAATCCCCAAATTACTA+GGG | - | chr1_2:11516767-11516786 | Msa0056050:intron | 40.0% | |
| CCAACAAAATACTTCAGCTC+TGG | + | chr1_2:11517093-11517112 | None:intergenic | 40.0% | |
| !! | CCAGAGCTGAAGTATTTTGT+TGG | - | chr1_2:11517090-11517109 | Msa0056050:intron | 40.0% |
| !! | GCTGAAGTATTTTGTTGGGA+TGG | - | chr1_2:11517095-11517114 | Msa0056050:intron | 40.0% |
| ! | GTATTTTGTTGGGATGGATG+TGG | - | chr1_2:11517101-11517120 | Msa0056050:intron | 40.0% |
| !!! | TCAGTTCAGTTTTGGACGAT+AGG | - | chr1_2:11517157-11517176 | Msa0056050:intron | 40.0% |
| !!! | CAGTTCAGTTTTGGACGATA+GGG | - | chr1_2:11517158-11517177 | Msa0056050:intron | 40.0% |
| CACATCAAATCTGTGCTTAG+AGG | - | chr1_2:11517222-11517241 | Msa0056050:intron | 40.0% | |
| CAAATCTGTGCTTAGAGGAA+CGG | - | chr1_2:11517227-11517246 | Msa0056050:intron | 40.0% | |
| AAATCTGTGCTTAGAGGAAC+GGG | - | chr1_2:11517228-11517247 | Msa0056050:intron | 40.0% | |
| ! | GTCTATTGATGGCATCTTGA+TGG | - | chr1_2:11517272-11517291 | Msa0056050:intron | 40.0% |
| AACGCATTAAAGTCTACCTG+AGG | + | chr1_2:11517684-11517703 | None:intergenic | 40.0% | |
| TAGCAATACATGTCTTCGGT+TGG | + | chr1_2:11517895-11517914 | None:intergenic | 40.0% | |
| ! | TTTAGACAGAAGCACAAGTC+GGG | + | chr1_2:11517948-11517967 | None:intergenic | 40.0% |
| TGTATTACTCTGCAGTAAGC+AGG | + | chr1_2:11518092-11518111 | None:intergenic | 40.0% | |
| TGACTCCTGGAATGAAAAGT+AGG | - | chr1_2:11518330-11518349 | Msa0056050:intron | 40.0% | |
| CTGCAATAGAAAACTGGAGA+AGG | + | chr1_2:11518360-11518379 | None:intergenic | 40.0% | |
| ! | CTTCTCCAGTTTTCTATTGC+AGG | - | chr1_2:11518358-11518377 | Msa0056050:intron | 40.0% |
| TAGAGCCTGCAATAGAAAAC+TGG | + | chr1_2:11518366-11518385 | None:intergenic | 40.0% | |
| TGACTGTGAAGGGAAAGTTA+CGG | + | chr1_2:11518499-11518518 | None:intergenic | 40.0% | |
| GAGTGGAATTTGACTGTGAA+GGG | + | chr1_2:11518509-11518528 | None:intergenic | 40.0% | |
| TGAGTGGAATTTGACTGTGA+AGG | + | chr1_2:11518510-11518529 | None:intergenic | 40.0% | |
| GACATTTGTGGAATCTTGAG+TGG | + | chr1_2:11518526-11518545 | None:intergenic | 40.0% | |
| CTCTAGCAATAGTACCAAGT+AGG | + | chr1_2:11518575-11518594 | None:intergenic | 40.0% | |
| CTACTTGGTACTATTGCTAG+AGG | - | chr1_2:11518573-11518592 | Msa0056050:intron | 40.0% | |
| !!! | TAGTGGGGGCTTTTTTAAGT+GGG | + | chr1_2:11518625-11518644 | None:intergenic | 40.0% |
| !!! | TTAGTGGGGGCTTTTTTAAG+TGG | + | chr1_2:11518626-11518645 | None:intergenic | 40.0% |
| !! | TAATTTAGTGGGCTTAGTGG+GGG | + | chr1_2:11518639-11518658 | None:intergenic | 40.0% |
| !!! | TATAGAAATTTTGGGGCCTG+GGG | - | chr1_2:11520654-11520673 | Msa0056050:intron | 40.0% |
| !!! | CTTGAGGGCTTTTGATTTGT+GGG | - | chr1_2:11520678-11520697 | Msa0056050:intron | 40.0% |
| ! | ATGTGGGCCTTTTAATCTTG+TGG | - | chr1_2:11520710-11520729 | Msa0056050:intron | 40.0% |
| !! | ATTTTGGTCTTCGAGGATTG+GGG | + | chr1_2:11520812-11520831 | None:intergenic | 40.0% |
| !!! | GTATTTTGGTCTTCGAGGAT+TGG | + | chr1_2:11520814-11520833 | None:intergenic | 40.0% |
| GAAGACCAAAATACCCTAGT+TGG | - | chr1_2:11520820-11520839 | Msa0056050:CDS | 40.0% | |
| TATGCACTATGATGCATCAG+AGG | - | chr1_2:11521001-11521020 | Msa0056050:intron | 40.0% | |
| GATCTTCAGTCCTCAAAACT+AGG | - | chr1_2:11521088-11521107 | Msa0056050:intron | 40.0% | |
| ATTACACTGTAACAGGTGGA+AGG | - | chr1_2:11521484-11521503 | Msa0056050:intron | 40.0% | |
| TCTCAATGCTTGAAATACCC+GGG | + | chr1_2:11521532-11521551 | None:intergenic | 40.0% | |
| TGATGAACTGAAGACTCTTG+AGG | - | chr1_2:11521563-11521582 | Msa0056050:intron | 40.0% | |
| GGCAGTCAAAACAAGAATAG+AGG | + | chr1_2:11521593-11521612 | None:intergenic | 40.0% | |
| GAAATGAAGACATGGGAGAA+GGG | - | chr1_2:11521700-11521719 | Msa0056050:intron | 40.0% | |
| AAATGAAGACATGGGAGAAG+GGG | - | chr1_2:11521701-11521720 | Msa0056050:intron | 40.0% | |
| TGGATAAGACAAGTAATGCC+TGG | - | chr1_2:11521780-11521799 | Msa0056050:intron | 40.0% | |
| CAAGTAATGCCTGGATCAAA+TGG | - | chr1_2:11521789-11521808 | Msa0056050:intron | 40.0% | |
| ! | TCTTCTTCTGATGGCGTAAT+TGG | + | chr1_2:11521834-11521853 | None:intergenic | 40.0% |
| AATTACGCCATCAGAAGAAG+AGG | - | chr1_2:11521833-11521852 | Msa0056050:intron | 40.0% | |
| AAGTTCTCCTCTTCTTCTGA+TGG | + | chr1_2:11521843-11521862 | None:intergenic | 40.0% | |
| ! | AAGTAGAAGTGCAAAGCTCA+GGG | - | chr1_2:11521872-11521891 | Msa0056050:intron | 40.0% |
| TACCACAGTGAGTTTAGGTC+TGG | - | chr1_2:11515779-11515798 | Msa0056050:intron | 45.0% | |
| TTCCAGACCTAAACTCACTG+TGG | + | chr1_2:11515784-11515803 | None:intergenic | 45.0% | |
| !!! | AAGTGCTGCTTCGGTTTTCT+TGG | + | chr1_2:11515965-11515984 | None:intergenic | 45.0% |
| ! | ACGCGTTCTTCTCTTTTCCT+TGG | + | chr1_2:11515989-11516008 | None:intergenic | 45.0% |
| TCTTAGGTCCCGTTTGGATT+AGG | + | chr1_2:11516319-11516338 | None:intergenic | 45.0% | |
| TCAAACTCGGATACTCCAGA+TGG | + | chr1_2:11516703-11516722 | None:intergenic | 45.0% | |
| AGTAATTTGGGGATTGGGTG+GGG | + | chr1_2:11516766-11516785 | None:intergenic | 45.0% | |
| CTAGTAATTTGGGGATTGGG+TGG | + | chr1_2:11516768-11516787 | None:intergenic | 45.0% | |
| CACCCAATCCCCAAATTACT+AGG | - | chr1_2:11516766-11516785 | Msa0056050:intron | 45.0% | |
| CCCCTAGTAATTTGGGGATT+GGG | + | chr1_2:11516771-11516790 | None:intergenic | 45.0% | |
| CCCAATCCCCAAATTACTAG+GGG | - | chr1_2:11516768-11516787 | Msa0056050:intron | 45.0% | |
| ! | ATCCCGCATCAGTTCAGTTT+TGG | - | chr1_2:11517149-11517168 | Msa0056050:intron | 45.0% |
| GTCCAAAACTGAACTGATGC+GGG | + | chr1_2:11517154-11517173 | None:intergenic | 45.0% | |
| CGTCCAAAACTGAACTGATG+CGG | + | chr1_2:11517155-11517174 | None:intergenic | 45.0% | |
| TTAGGGGATGCGTCTATTGA+TGG | - | chr1_2:11517261-11517280 | Msa0056050:intron | 45.0% | |
| CTTGTGTTGTGTCCTACTCA+TGG | - | chr1_2:11517359-11517378 | Msa0056050:intron | 45.0% | |
| TAGGTGGATGATCCTCAAAG+AGG | - | chr1_2:11517615-11517634 | Msa0056050:intron | 45.0% | |
| AGCACACTGAATCCTCTTTG+AGG | + | chr1_2:11517630-11517649 | None:intergenic | 45.0% | |
| CAAAGAGGATTCAGTGTGCT+TGG | - | chr1_2:11517630-11517649 | Msa0056050:intron | 45.0% | |
| TACATGTCTTCGGTTGGAGT+TGG | + | chr1_2:11517889-11517908 | None:intergenic | 45.0% | |
| GGCCTGTCCATCAGTTTAAT+AGG | + | chr1_2:11518127-11518146 | None:intergenic | 45.0% | |
| !! | CTTTAAGGCTTGCCTGTCAT+AGG | + | chr1_2:11518148-11518167 | None:intergenic | 45.0% |
| TTCTTGGCCAGATACTGAAG+TGG | - | chr1_2:11518184-11518203 | Msa0056050:intron | 45.0% | |
| TCTTGGCCAGATACTGAAGT+GGG | - | chr1_2:11518185-11518204 | Msa0056050:intron | 45.0% | |
| GCCGTATCCTAAGGGATTAT+GGG | - | chr1_2:11518207-11518226 | Msa0056050:intron | 45.0% | |
| CCCCATAATCCCTTAGGATA+CGG | + | chr1_2:11518211-11518230 | None:intergenic | 45.0% | |
| CCGTATCCTAAGGGATTATG+GGG | - | chr1_2:11518208-11518227 | Msa0056050:intron | 45.0% | |
| TCTCTTCCCCATAATCCCTT+AGG | + | chr1_2:11518217-11518236 | None:intergenic | 45.0% | |
| ATTGTCCAAGCCCGTTTAGA+AGG | - | chr1_2:11518263-11518282 | Msa0056050:intron | 45.0% | |
| CTGAATGAGATCCAGCAAGT+CGG | + | chr1_2:11518306-11518325 | None:intergenic | 45.0% | |
| !! | GACGACCTACTTTTCATTCC+AGG | + | chr1_2:11518338-11518357 | None:intergenic | 45.0% |
| CCACAAATCAAAAGCCCTCA+AGG | + | chr1_2:11520680-11520699 | None:intergenic | 45.0% | |
| !!! | CCTTGAGGGCTTTTGATTTG+TGG | - | chr1_2:11520677-11520696 | Msa0056050:intron | 45.0% |
| TTTGTGGGCTTGCATGAATG+TGG | - | chr1_2:11520693-11520712 | Msa0056050:intron | 45.0% | |
| TTGTGGGCTTGCATGAATGT+GGG | - | chr1_2:11520694-11520713 | Msa0056050:intron | 45.0% | |
| ! | ATCATGGGGCCTTGAAGTTT+TGG | + | chr1_2:11520768-11520787 | None:intergenic | 45.0% |
| !! | TTTTGGTCTTCGAGGATTGG+GGG | + | chr1_2:11520811-11520830 | None:intergenic | 45.0% |
| !!! | CTAGGGTATTTTGGTCTTCG+AGG | + | chr1_2:11520819-11520838 | None:intergenic | 45.0% |
| !! | GAAGCCCAACTAGGGTATTT+TGG | + | chr1_2:11520828-11520847 | None:intergenic | 45.0% |
| TCATAGCAGAAGCCCAACTA+GGG | + | chr1_2:11520836-11520855 | None:intergenic | 45.0% | |
| !! | AGAAGAGTGTCTTCCTCCAA+AGG | + | chr1_2:11520904-11520923 | None:intergenic | 45.0% |
| GTTGGATAAAGACAGCAACC+CGG | - | chr1_2:11521511-11521530 | Msa0056050:intron | 45.0% | |
| TTGGATAAAGACAGCAACCC+GGG | - | chr1_2:11521512-11521531 | Msa0056050:intron | 45.0% | |
| TCTGTCCTCCAAACTGTGAA+AGG | + | chr1_2:11521646-11521665 | None:intergenic | 45.0% | |
| GGAAATGAAGACATGGGAGA+AGG | - | chr1_2:11521699-11521718 | Msa0056050:intron | 45.0% | |
| GCTTTGCACTTCTACTTCTG+CGG | + | chr1_2:11521869-11521888 | None:intergenic | 45.0% | |
| ! | GAAGTAGAAGTGCAAAGCTC+AGG | - | chr1_2:11521871-11521890 | Msa0056050:intron | 45.0% |
| !! | TAAGAAAAAAATTATAATAT+GGG | + | chr1_2:11518737-11518756 | None:intergenic | 5.0% |
| !! | TTAAGAAAAAAATTATAATA+TGG | + | chr1_2:11518738-11518757 | None:intergenic | 5.0% |
| !!! | GTTATTTTTTAAAATTAAAT+CGG | + | chr1_2:11519345-11519364 | None:intergenic | 5.0% |
| !!! | GTTATTTTTTAAAATTAAAT+CGG | + | chr1_2:11519345-11519364 | None:intergenic | 5.0% |
| !!! | GTTATTTTTTAAAATTAAAT+CGG | + | chr1_2:11519345-11519364 | None:intergenic | 5.0% |
| ! | TGTGATTCTGGAAGAAGCGG+TGG | + | chr1_2:11515938-11515957 | None:intergenic | 50.0% |
| !! | TTCCTTGGCAAGTGCTGCTT+CGG | + | chr1_2:11515974-11515993 | None:intergenic | 50.0% |
| !! | GATTGTACTCTTGGTGCTGC+TGG | - | chr1_2:11516135-11516154 | Msa0056050:three_prime_UTR | 50.0% |
| GCCCCTAGTAATTTGGGGAT+TGG | + | chr1_2:11516772-11516791 | None:intergenic | 50.0% | |
| TCGAGGGCCCCTAGTAATTT+GGG | + | chr1_2:11516778-11516797 | None:intergenic | 50.0% | |
| TTCGAGGGCCCCTAGTAATT+TGG | + | chr1_2:11516779-11516798 | None:intergenic | 50.0% | |
| TCTTAATCCCCCAGCTTCGA+GGG | + | chr1_2:11516794-11516813 | None:intergenic | 50.0% | |
| ! | TGATGGCATCTTGATGGACC+TGG | - | chr1_2:11517278-11517297 | Msa0056050:intron | 50.0% |
| ! | GATGGCATCTTGATGGACCT+GGG | - | chr1_2:11517279-11517298 | Msa0056050:intron | 50.0% |
| ! | GGATTCAGTGTGCTTGGTGA+TGG | - | chr1_2:11517636-11517655 | Msa0056050:intron | 50.0% |
| TGGACCACTTGATATGCGCA+TGG | - | chr1_2:11517656-11517675 | Msa0056050:intron | 50.0% | |
| GGATCCATGCGCATATCAAG+TGG | + | chr1_2:11517663-11517682 | None:intergenic | 50.0% | |
| TGATATGCGCATGGATCCTC+AGG | - | chr1_2:11517665-11517684 | Msa0056050:intron | 50.0% | |
| ATACGGCCCACTTCAGTATC+TGG | + | chr1_2:11518194-11518213 | None:intergenic | 50.0% | |
| TGAAGTGGGCCGTATCCTAA+GGG | - | chr1_2:11518199-11518218 | Msa0056050:intron | 50.0% | |
| GGCCGTATCCTAAGGGATTA+TGG | - | chr1_2:11518206-11518225 | Msa0056050:intron | 50.0% | |
| ! | ATCCACCTTCTAAACGGGCT+TGG | + | chr1_2:11518271-11518290 | None:intergenic | 50.0% |
| !! | ACATTCCACTACCGACTTGC+TGG | - | chr1_2:11518292-11518311 | Msa0056050:intron | 50.0% |
| AAGGGAAAGTTACGGTGGAG+GGG | + | chr1_2:11518491-11518510 | None:intergenic | 50.0% | |
| GAAGGGAAAGTTACGGTGGA+GGG | + | chr1_2:11518492-11518511 | None:intergenic | 50.0% | |
| TGAAGGGAAAGTTACGGTGG+AGG | + | chr1_2:11518493-11518512 | None:intergenic | 50.0% | |
| CTGTGAAGGGAAAGTTACGG+TGG | + | chr1_2:11518496-11518515 | None:intergenic | 50.0% | |
| GGATTGGGGGCAATAGTTAG+AGG | + | chr1_2:11520798-11520817 | None:intergenic | 50.0% | |
| GTCATAGCAGAAGCCCAACT+AGG | + | chr1_2:11520837-11520856 | None:intergenic | 50.0% | |
| ACTGTAACAGGTGGAAGGCA+AGG | - | chr1_2:11521489-11521508 | Msa0056050:intron | 50.0% | |
| TAACAGGTGGAAGGCAAGGT+TGG | - | chr1_2:11521493-11521512 | Msa0056050:intron | 50.0% | |
| !!! | TGTTTTGACTGCCTTGCACC+TGG | - | chr1_2:11521600-11521619 | Msa0056050:intron | 50.0% |
| !!! | GTTTTGACTGCCTTGCACCT+GGG | - | chr1_2:11521601-11521620 | Msa0056050:intron | 50.0% |
| !! | TTTTGACTGCCTTGCACCTG+GGG | - | chr1_2:11521602-11521621 | Msa0056050:intron | 50.0% |
| TCTGGAAGAAGCGGTGGTGA+GGG | + | chr1_2:11515932-11515951 | None:intergenic | 55.0% | |
| ! | TTCTGGAAGAAGCGGTGGTG+AGG | + | chr1_2:11515933-11515952 | None:intergenic | 55.0% |
| AACCGAAGCAGCACTTGCCA+AGG | - | chr1_2:11515969-11515988 | Msa0056050:three_prime_UTR | 55.0% | |
| CGAGGGCCCCTAGTAATTTG+GGG | + | chr1_2:11516777-11516796 | None:intergenic | 55.0% | |
| GTCTTAATCCCCCAGCTTCG+AGG | + | chr1_2:11516795-11516814 | None:intergenic | 55.0% | |
| TGTGCTTAGAGGAACGGGAG+AGG | - | chr1_2:11517233-11517252 | Msa0056050:intron | 55.0% | |
| !! | GAACGGGAGAGGAGCACTTA+GGG | - | chr1_2:11517244-11517263 | Msa0056050:intron | 55.0% |
| !! | AACGGGAGAGGAGCACTTAG+GGG | - | chr1_2:11517245-11517264 | Msa0056050:intron | 55.0% |
| CCTGCATAGATGACATGCCC+AGG | + | chr1_2:11517299-11517318 | None:intergenic | 55.0% | |
| CCTGGGCATGTCATCTATGC+AGG | - | chr1_2:11517296-11517315 | Msa0056050:intron | 55.0% | |
| ! | CTGATGGACAGGCCTATGAC+AGG | - | chr1_2:11518133-11518152 | Msa0056050:intron | 55.0% |
| CTGAAGTGGGCCGTATCCTA+AGG | - | chr1_2:11518198-11518217 | Msa0056050:intron | 55.0% | |
| GTCCAAGCCCGTTTAGAAGG+TGG | - | chr1_2:11518266-11518285 | Msa0056050:intron | 55.0% | |
| GAGATCCAGCAAGTCGGTAG+TGG | + | chr1_2:11518300-11518319 | None:intergenic | 55.0% | |
| CTCATTCAGCGTGTGACTCC+TGG | - | chr1_2:11518317-11518336 | Msa0056050:intron | 55.0% | |
| AGGGAAAGTTACGGTGGAGG+GGG | + | chr1_2:11518490-11518509 | None:intergenic | 55.0% | |
| AGCCCCATTACTATGTGGGC+TGG | - | chr1_2:11520740-11520759 | Msa0056050:intron | 55.0% | |
| GCCCCATTACTATGTGGGCT+GGG | - | chr1_2:11520741-11520760 | Msa0056050:intron | 55.0% | |
| CCCCAGCCCACATAGTAATG+GGG | + | chr1_2:11520745-11520764 | None:intergenic | 55.0% | |
| ! | CCCCATTACTATGTGGGCTG+GGG | - | chr1_2:11520742-11520761 | Msa0056050:intron | 55.0% |
| GCCCCAGCCCACATAGTAAT+GGG | + | chr1_2:11520746-11520765 | None:intergenic | 55.0% | |
| TTTGACTGCCTTGCACCTGG+GGG | - | chr1_2:11521603-11521622 | Msa0056050:intron | 55.0% | |
| ATAACAGCAAGCCTACCCCC+AGG | + | chr1_2:11521621-11521640 | None:intergenic | 55.0% | |
| TTACTAGGGGCCCTCGAAGC+TGG | - | chr1_2:11516781-11516800 | Msa0056050:intron | 60.0% | |
| TACTAGGGGCCCTCGAAGCT+GGG | - | chr1_2:11516782-11516801 | Msa0056050:intron | 60.0% | |
| TGGGATGGATGTGGACCCTG+TGG | - | chr1_2:11517110-11517129 | Msa0056050:intron | 60.0% | |
| GGGATGGATGTGGACCCTGT+GGG | - | chr1_2:11517111-11517130 | Msa0056050:intron | 60.0% | |
| GGATGGATGTGGACCCTGTG+GGG | - | chr1_2:11517112-11517131 | Msa0056050:intron | 60.0% | |
| !! | GGAACGGGAGAGGAGCACTT+AGG | - | chr1_2:11517243-11517262 | Msa0056050:intron | 60.0% |
| TCAAAAGCCCTCAAGGCCCC+AGG | + | chr1_2:11520673-11520692 | None:intergenic | 60.0% | |
| GGCCCCAGCCCACATAGTAA+TGG | + | chr1_2:11520747-11520766 | None:intergenic | 60.0% | |
| GGGCTGGGGCCAAAACTTCA+AGG | - | chr1_2:11520756-11520775 | Msa0056050:intron | 60.0% | |
| ACTAGGGGCCCTCGAAGCTG+GGG | - | chr1_2:11516783-11516802 | Msa0056050:intron | 65.0% | |
| GGACCCTGTGGGGAGTGACA+CGG | - | chr1_2:11517122-11517141 | Msa0056050:intron | 65.0% | |
| ! | GAGCCGTGTCACTCCCCACA+GGG | + | chr1_2:11517128-11517147 | None:intergenic | 65.0% |
| ! | TGAGCCGTGTCACTCCCCAC+AGG | + | chr1_2:11517129-11517148 | None:intergenic | 65.0% |
| !!! | TTTTGGGGCCTGGGGCCTTG+AGG | - | chr1_2:11520662-11520681 | Msa0056050:intron | 65.0% |
| ! | TTTGGGGCCTGGGGCCTTGA+GGG | - | chr1_2:11520663-11520682 | Msa0056050:intron | 65.0% |
| ACTGCCTTGCACCTGGGGGT+AGG | - | chr1_2:11521607-11521626 | Msa0056050:intron | 65.0% | |
| CAAGCCTACCCCCAGGTGCA+AGG | + | chr1_2:11521614-11521633 | None:intergenic | 65.0% | |
| CTAGGGGCCCTCGAAGCTGG+GGG | - | chr1_2:11516784-11516803 | Msa0056050:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 11515745 | 11522344 | 11515745 | ID=Msa0056050;Name=Msa0056050 |
| chr1_2 | mRNA | 11515745 | 11522344 | 11515745 | ID=Msa0056050-mRNA-1;Parent=Msa0056050;Name=Msa0056050-mRNA-1;_AED=0.05;_eAED=0.05;_QI=75|1|1|1|0.8|0.66|6|276|422 |
| chr1_2 | exon | 11515745 | 11515781 | 11515745 | ID=Msa0056050-mRNA-1:exon:4377;Parent=Msa0056050-mRNA-1 |
| chr1_2 | exon | 11515939 | 11516590 | 11515939 | ID=Msa0056050-mRNA-1:exon:4376;Parent=Msa0056050-mRNA-1 |
| chr1_2 | exon | 11519742 | 11519934 | 11519742 | ID=Msa0056050-mRNA-1:exon:4375;Parent=Msa0056050-mRNA-1 |
| chr1_2 | exon | 11520403 | 11520471 | 11520403 | ID=Msa0056050-mRNA-1:exon:4374;Parent=Msa0056050-mRNA-1 |
| chr1_2 | exon | 11520772 | 11521014 | 11520772 | ID=Msa0056050-mRNA-1:exon:4373;Parent=Msa0056050-mRNA-1 |
| chr1_2 | exon | 11521919 | 11522344 | 11521919 | ID=Msa0056050-mRNA-1:exon:4372;Parent=Msa0056050-mRNA-1 |
| chr1_2 | five_prime_UTR | 11522270 | 11522344 | 11522270 | ID=Msa0056050-mRNA-1:five_prime_utr;Parent=Msa0056050-mRNA-1 |
| chr1_2 | CDS | 11521919 | 11522269 | 11521919 | ID=Msa0056050-mRNA-1:cds;Parent=Msa0056050-mRNA-1 |
| chr1_2 | CDS | 11520772 | 11521014 | 11520772 | ID=Msa0056050-mRNA-1:cds;Parent=Msa0056050-mRNA-1 |
| chr1_2 | CDS | 11520403 | 11520471 | 11520403 | ID=Msa0056050-mRNA-1:cds;Parent=Msa0056050-mRNA-1 |
| chr1_2 | CDS | 11519742 | 11519934 | 11519742 | ID=Msa0056050-mRNA-1:cds;Parent=Msa0056050-mRNA-1 |
| chr1_2 | CDS | 11516178 | 11516590 | 11516178 | ID=Msa0056050-mRNA-1:cds;Parent=Msa0056050-mRNA-1 |
| chr1_2 | three_prime_UTR | 11515939 | 11516177 | 11515939 | ID=Msa0056050-mRNA-1:three_prime_utr;Parent=Msa0056050-mRNA-1 |
| chr1_2 | three_prime_UTR | 11515745 | 11515781 | 11515745 | ID=Msa0056050-mRNA-1:three_prime_utr;Parent=Msa0056050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
