AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0051190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051190 MtrunA17_Chr1g0154001 90.826 545 14 1 1 509 1 545 0.0 1010
Msa0051190 MtrunA17_Chr1g0154191 91.599 369 24 1 511 872 4 372 0.0 696
Msa0051190 MtrunA17_Chr8g0379171 53.216 513 204 1 35 511 12 524 0.0 555
Msa0051190 MtrunA17_Chr3g0119521 53.229 511 202 2 36 509 8 518 0.0 545
Msa0051190 MtrunA17_Chr2g0284061 50.000 512 220 1 36 511 13 524 0.0 531
Msa0051190 MtrunA17_Chr1g0154171 71.046 373 77 6 512 871 6 360 6.78e-170 496
Msa0051190 MtrunA17_Chr4g0059331 47.860 514 226 4 36 509 19 530 1.36e-160 479
Msa0051190 MtrunA17_Chr3g0117941 47.266 512 232 2 36 509 19 530 2.38e-160 479
Msa0051190 MtrunA17_Chr8g0364611 46.667 510 234 2 38 509 22 531 1.12e-157 472
Msa0051190 MtrunA17_Chr1g0207021 46.887 514 233 4 36 511 16 527 1.81e-153 461
Msa0051190 MtrunA17_Chr1g0154161 63.712 361 83 5 512 872 13 325 7.08e-151 446
Msa0051190 MtrunA17_Chr5g0414131 44.045 529 252 5 21 509 12 536 1.77e-149 451
Msa0051190 MtrunA17_Chr3g0134911 42.364 550 240 7 32 509 39 583 1.47e-138 424
Msa0051190 MtrunA17_Chr5g0405471 43.643 527 237 5 38 509 39 560 1.13e-137 421
Msa0051190 MtrunA17_Chr1g0154151 65.758 330 79 7 544 864 19 323 1.23e-136 410
Msa0051190 MtrunA17_Chr1g0154211 54.342 403 124 8 512 866 6 396 8.84e-134 405
Msa0051190 MtrunA17_Chr1g0154101 49.672 457 113 8 513 865 168 611 2.38e-125 398
Msa0051190 MtrunA17_Chr1g0154101 72.619 168 39 1 511 671 7 174 1.15e-71 253
Msa0051190 MtrunA17_Chr1g0154101 39.080 348 167 9 543 871 521 842 2.68e-53 199
Msa0051190 MtrunA17_Chr1g0154111 55.381 381 135 8 504 863 1 367 1.98e-124 388
Msa0051190 MtrunA17_Chr1g0154111 56.250 208 66 6 544 726 368 575 7.14e-53 194
Msa0051190 MtrunA17_Chr1g0154131 55.556 360 103 8 513 864 168 478 7.17e-118 367
Msa0051190 MtrunA17_Chr1g0154131 67.857 168 46 2 511 671 8 174 1.56e-65 227
Msa0051190 MtrunA17_Chr1g0154071 51.081 370 132 8 517 860 145 491 5.30e-106 336
Msa0051190 MtrunA17_Chr1g0154071 80.952 126 23 1 511 636 10 134 8.53e-58 206
Msa0051190 MtrunA17_Chr2g0320981 32.961 537 282 11 42 506 146 676 1.51e-87 293
Msa0051190 MtrunA17_Chr1g0154241 62.109 256 46 7 513 722 6 256 1.71e-86 276
Msa0051190 MtrunA17_Chr4g0027121 31.354 539 293 9 37 503 148 681 2.72e-82 279
Msa0051190 MtrunA17_Chr8g0367361 29.081 533 306 5 42 506 238 766 1.80e-76 265
Msa0051190 MtrunA17_Chr1g0154251 40.852 399 152 10 512 841 10 393 1.11e-75 256
Msa0051190 MtrunA17_Chr5g0412181 30.524 534 295 6 42 505 167 694 2.75e-73 254
Msa0051190 MtrunA17_Chr2g0332871 31.928 498 259 11 63 504 166 639 5.29e-71 247
Msa0051190 MtrunA17_Chr1g0154041 36.571 350 181 9 541 865 27 360 3.92e-56 204
Msa0051190 MtrunA17_Chr1g0154041 42.727 330 145 12 562 872 292 596 1.33e-55 202
Msa0051190 MtrunA17_Chr1g0154121 43.119 109 44 2 773 872 2 101 1.69e-21 90.1
Msa0051190 MtrunA17_Chr3g0131891 26.254 339 186 10 523 852 18 301 2.57e-20 93.2
Msa0051190 MtrunA17_Chr7g0233561 25.000 340 196 8 527 852 16 310 4.17e-20 92.4
Msa0051190 MtrunA17_Chr1g0208771 24.332 337 201 11 533 858 1 294 8.01e-19 90.5
Msa0051190 MtrunA17_Chr7g0233531 25.879 313 174 8 545 852 2 261 7.59e-18 84.7
Msa0051190 MtrunA17_Chr5g0418111 53.571 56 26 0 442 497 39 94 6.92e-15 71.2
Msa0051190 MtrunA17_Chr8g0390841 23.229 353 206 12 522 858 32 335 1.08e-14 77.8
Msa0051190 MtrunA17_Chr5g0429931 25.000 300 143 10 545 843 11 229 4.51e-13 70.1
Msa0051190 MtrunA17_Chr7g0233571 34.694 98 64 0 522 619 3 100 1.16e-12 68.2
Msa0051190 MtrunA17_Chr1g0163221 24.074 324 182 12 527 842 9 276 1.42e-11 67.0
Msa0051190 MtrunA17_Chr4g0067431 23.457 324 201 11 527 842 13 297 4.89e-11 65.1
Msa0051190 MtrunA17_Chr3g0077461 27.473 182 125 4 488 664 196 375 6.27e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051190 AT2G26510.1 64.190 525 151 2 22 509 23 547 0.0 671
Msa0051190 AT2G34190.1 51.562 512 212 1 36 511 13 524 0.0 545
Msa0051190 AT2G05760.1 51.663 511 210 2 36 509 8 518 0.0 540
Msa0051190 AT2G26510.2 69.298 342 105 0 22 363 23 364 1.03e-160 476
Msa0051190 AT2G26510.3 69.298 342 105 0 22 363 23 364 1.27e-160 475
Msa0051190 AT5G62890.1 47.461 512 231 2 36 509 19 530 3.15e-159 476
Msa0051190 AT5G62890.2 47.461 512 231 2 36 509 19 530 3.15e-159 476
Msa0051190 AT5G62890.3 47.461 512 231 2 36 509 19 530 3.15e-159 476
Msa0051190 AT1G60030.1 44.782 527 250 3 21 509 13 536 5.29e-157 471
Msa0051190 AT1G10540.1 44.549 532 247 7 21 509 11 537 4.20e-150 453
Msa0051190 AT5G49990.2 46.680 512 235 2 36 509 15 526 5.62e-149 449
Msa0051190 AT5G49990.3 46.680 512 235 2 36 509 15 526 5.62e-149 449
Msa0051190 AT5G49990.1 46.680 512 235 2 36 509 15 526 5.62e-149 449
Msa0051190 AT5G49990.4 46.680 512 235 2 36 509 15 526 5.62e-149 449
Msa0051190 AT1G49960.1 45.490 510 240 2 38 509 15 524 1.03e-137 420
Msa0051190 AT1G65550.1 41.973 517 253 4 38 509 25 539 2.13e-135 415
Msa0051190 AT5G62890.4 47.285 442 197 1 36 441 19 460 3.21e-134 409
Msa0051190 AT1G10540.2 45.930 344 176 5 21 359 11 349 1.36e-99 316
Msa0051190 AT5G25420.1 41.645 389 189 6 38 423 37 390 1.89e-87 285
Msa0051190 AT2G27810.1 31.471 537 295 8 41 507 167 700 8.28e-79 270
Msa0051190 AT2G27810.4 30.125 561 295 9 41 507 167 724 8.34e-74 257
Msa0051190 AT2G27810.2 33.491 424 227 5 41 410 167 589 1.68e-66 233
Msa0051190 AT4G38050.1 29.323 532 304 5 43 506 175 702 1.98e-65 233
Msa0051190 AT2G27810.3 36.254 331 192 3 41 353 167 496 3.05e-59 212
Msa0051190 AT4G33280.1 30.702 342 196 7 515 853 11 314 1.05e-42 159
Msa0051190 AT4G33280.2 46.012 163 77 4 515 676 11 163 6.07e-38 144
Msa0051190 AT4G33280.3 46.012 163 77 4 515 676 11 163 1.25e-36 143
Msa0051190 AT3G18990.1 24.269 342 224 9 529 850 6 332 3.12e-18 87.8
Msa0051190 AT3G18990.2 24.269 342 224 9 529 850 6 332 9.34e-18 86.7
Msa0051190 AT4G34400.2 37.963 108 61 3 522 626 8 112 4.90e-16 81.6
Msa0051190 AT4G34400.1 37.963 108 61 3 522 626 8 112 4.90e-16 81.6
Msa0051190 AT5G66980.1 25.697 323 176 15 541 843 21 299 3.83e-15 78.2
Msa0051190 AT5G60130.5 41.573 89 47 2 543 626 27 115 1.50e-14 74.7
Msa0051190 AT3G06220.1 32.222 90 59 1 529 618 11 98 2.96e-13 69.3
Msa0051190 AT5G60130.2 40.659 91 49 2 541 626 25 115 7.85e-13 70.9
Msa0051190 AT5G60130.3 41.573 89 47 2 543 626 1 89 8.53e-13 70.5
Msa0051190 AT5G60130.4 40.659 91 49 2 541 626 22 112 9.83e-13 70.9
Msa0051190 AT5G60130.1 40.659 91 49 2 541 626 25 115 1.08e-12 70.5
Msa0051190 AT1G49475.1 40.000 80 47 1 540 619 45 123 4.31e-12 66.2
Msa0051190 AT3G06160.1 29.730 148 86 4 529 675 26 156 6.19e-11 65.5
Msa0051190 AT3G06160.5 29.730 148 86 4 529 675 11 141 6.49e-11 65.1
Msa0051190 AT3G06160.4 29.730 148 86 4 529 675 11 141 6.49e-11 65.1
Msa0051190 AT3G06160.3 29.730 148 86 4 529 675 11 141 6.49e-11 65.1
Msa0051190 AT3G18960.1 36.842 95 48 2 542 625 32 125 7.35e-11 63.2
Msa0051190 AT3G18960.2 36.842 95 48 2 542 625 32 125 8.22e-11 62.8
Msa0051190 AT3G06160.2 29.730 148 86 4 529 675 70 200 8.42e-11 65.5

Find 230 sgRNAs with CRISPR-Local

Find 535 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCGCCGCAGCCAGGCTTTC+TGG 0.141398 1_2:-5287989 Msa0051190:CDS
CGTGATAATAACATTAAATT+TGG 0.154377 1_2:-5283604 Msa0051190:CDS
CACAGACTTGTTTGTGTCCT+TGG 0.171497 1_2:+5284813 None:intergenic
TTATCTGCATTGCCGTTATT+TGG 0.173804 1_2:-5288936 Msa0051190:CDS
CAACTCCACTAGGACCTTTA+AGG 0.178570 1_2:+5285066 None:intergenic
GGACCACCACCTCAGAATTT+TGG 0.200219 1_2:-5290768 Msa0051190:CDS
ACCTGAGTGTTCTTTGTTAC+AGG 0.205520 1_2:+5284585 None:intergenic
TTCAAGGCTTCCGGTGATTA+TGG 0.205728 1_2:-5289927 Msa0051190:CDS
GTGATGCAAGTTCATATATC+TGG 0.223627 1_2:-5283547 Msa0051190:CDS
ATGTCTATTTCAGGTAAATT+TGG 0.226588 1_2:-5287310 Msa0051190:intron
CCAGAAAATGTGACCCTTAA+AGG 0.236805 1_2:-5285080 Msa0051190:CDS
CGGTGGTGCTATGAAGAAAT+TGG 0.266641 1_2:+5286134 None:intergenic
GCCGCTATCCTTACCGTTGC+TGG 0.267986 1_2:-5288907 Msa0051190:CDS
CAAGAACGTTAGCAGGTAAA+TGG 0.276363 1_2:+5283454 None:intergenic
CAGCCGAAGCATCGGGCTTC+AGG 0.280020 1_2:-5287939 Msa0051190:intron
TGCAGCTGAAGCATTGCTTT+TGG 0.280132 1_2:-5290277 Msa0051190:intron
CTATCTCCTGCAGCTGCTAC+TGG 0.282930 1_2:-5287140 Msa0051190:intron
TTCAAAGCTAGTCATGTCTT+TGG 0.283918 1_2:-5288423 Msa0051190:CDS
GTGATGATGATACAGCTAAT+TGG 0.290978 1_2:+5283327 None:intergenic
GACATGACTAGCTTTGAATA+TGG 0.296354 1_2:+5288428 None:intergenic
CTTGGGAGGAAGAGATTTAC+TGG 0.300092 1_2:-5286183 Msa0051190:CDS
TTCAGACTTGGTTTGGTTCA+AGG 0.300502 1_2:-5289943 Msa0051190:CDS
GAAGGTCTTGACCAGCAAAA+TGG 0.302980 1_2:-5283514 Msa0051190:CDS
TTATGAGAAGTAGCTGCTTT+TGG 0.305223 1_2:+5284628 None:intergenic
ACAAGCGTAAATTTATTAAC+AGG 0.306921 1_2:+5284661 None:intergenic
AACTTTCGCATCTGAGAATC+AGG 0.310869 1_2:-5289846 Msa0051190:intron
TTCGGCTTAACCTTGTTTCT+CGG 0.314131 1_2:-5287065 Msa0051190:CDS
TCTGTCCACAGCTGTTTGTT+TGG 0.324863 1_2:+5286664 None:intergenic
CAGTATATAGCAGCGAATAT+TGG 0.336373 1_2:+5287262 None:intergenic
TGAAATGGATGAACTGAAAA+TGG 0.343707 1_2:+5286158 None:intergenic
TTGGTTTGGTTCAAGGCTTC+CGG 0.345806 1_2:-5289936 Msa0051190:CDS
TATCTGCATTGCCGTTATTT+GGG 0.347060 1_2:-5288935 Msa0051190:CDS
TATCAATGTTTCACGTACTA+TGG 0.347323 1_2:-5283966 Msa0051190:intron
AATCTCTTCCTCCCAAGATT+TGG 0.351389 1_2:+5286189 None:intergenic
AATTGGGAGGGAGCTGCAAC+AGG 0.351758 1_2:+5284706 None:intergenic
TCAAGGCTTCCGGTGATTAT+GGG 0.354222 1_2:-5289926 Msa0051190:CDS
ACTGGTCTCCGTTTAGCATA+TGG 0.355660 1_2:+5283661 None:intergenic
TACAAGTTGTTGTTGAAAAT+CGG 0.364741 1_2:+5286114 None:intergenic
GCATCCATTCAAATCCTTCA+TGG 0.366156 1_2:-5290689 Msa0051190:CDS
CGCCATTGTACTTGAAGAAA+AGG 0.367579 1_2:+5284946 None:intergenic
ATTGTTCTCCCTTTAGCATA+TGG 0.373391 1_2:+5283694 None:intergenic
GAAAACATAGATATTCCTTA+TGG 0.375416 1_2:+5287085 None:intergenic
CAGACATTGTTGTTTATGTC+TGG 0.378631 1_2:-5289980 Msa0051190:CDS
CATCCACCATTGGTTCTAAC+TGG 0.379887 1_2:+5286990 None:intergenic
GATTCTCAGATGCGAAAGTT+TGG 0.384482 1_2:+5289849 None:intergenic
GAGAGGAATTGATGCGAAAA+AGG 0.386029 1_2:+5287285 None:intergenic
AACGTAGTAACCTTAATAAC+TGG 0.386354 1_2:-5291085 Msa0051190:five_prime_UTR
AGTATATAGCAGCGAATATT+GGG 0.387392 1_2:+5287263 None:intergenic
GCATCAGCCATGCACTTCTC+AGG 0.387871 1_2:+5284745 None:intergenic
AAGCAACCTTGTACCTCAAA+TGG 0.396389 1_2:-5290208 Msa0051190:CDS
TGTGCAGCAGAGAAATGATA+TGG 0.401325 1_2:+5283787 None:intergenic
AGCACTTGTCACTTCTTTCG+AGG 0.406623 1_2:-5288388 Msa0051190:intron
TCAAAGCTAGTCATGTCTTT+GGG 0.407287 1_2:-5288422 Msa0051190:CDS
GCAGCTCCCTCCCAATTAAC+TGG 0.410875 1_2:-5284700 Msa0051190:CDS
TCATAAGAGAGCACATGATT+TGG 0.411083 1_2:-5284611 Msa0051190:CDS
GGCATTTGTGGCTCTATTGT+TGG 0.413169 1_2:-5287804 Msa0051190:intron
CCTGAACTGACGGTGGTGCT+TGG 0.414463 1_2:+5290802 None:intergenic
TTGTTCTCCCTTTAGCATAT+GGG 0.416728 1_2:+5283695 None:intergenic
TTTGTTAAAATATTTAAAAC+CGG 0.417027 1_2:-5283992 Msa0051190:CDS
GACTTTCAAGGGGTCCCACT+TGG 0.421667 1_2:-5290746 Msa0051190:CDS
CAGCACTACATTGTGATGCT+TGG 0.426352 1_2:-5290249 Msa0051190:CDS
ACATTGCTTCAGACTTGGTT+TGG 0.426916 1_2:-5289950 Msa0051190:CDS
TCGGCTTAACCTTGTTTCTC+GGG 0.432455 1_2:-5287064 Msa0051190:CDS
ACATGACTAGCTTTGAATAT+GGG 0.438479 1_2:+5288429 None:intergenic
ACATGACTCCCACCCATTTG+AGG 0.442621 1_2:+5290195 None:intergenic
AAGGTCTTGACCAGCAAAAT+GGG 0.444958 1_2:-5283513 Msa0051190:CDS
TAGTCATGTCTTTGGGATGA+TGG 0.446341 1_2:-5288415 Msa0051190:CDS
AACTCTATCCCATATGCTAA+AGG 0.447966 1_2:-5283703 Msa0051190:CDS
CAGACATAAACAACAATGTC+TGG 0.448314 1_2:+5289981 None:intergenic
TGGTAGGAAGCACCAAATCT+TGG 0.448666 1_2:-5286201 Msa0051190:intron
CCAACTGTGGCAATAATAGT+TGG 0.450422 1_2:-5286713 Msa0051190:CDS
GGGTGTTGCACCAGAAAGCC+TGG 0.450632 1_2:+5287979 None:intergenic
GGTGGGTTCCTTTCCAGAAA+AGG 0.452846 1_2:-5286631 Msa0051190:CDS
TTTAACAAAATATGGAAAAG+AGG 0.454776 1_2:+5284006 None:intergenic
TATGAAGAAATTGGGTGAAA+TGG 0.456523 1_2:+5286143 None:intergenic
CCAAGCACCACCGTCAGTTC+AGG 0.456536 1_2:-5290802 Msa0051190:CDS
ATGTGCTCAGCCGAAGCATC+GGG 0.457152 1_2:-5287946 Msa0051190:CDS
TGAGGTGGTGGTCCCGGTGG+CGG 0.457958 1_2:+5290777 None:intergenic
TCTGCTGATTGTAACACAAC+AGG 0.459246 1_2:-5289096 Msa0051190:intron
ACTATTATTGCCACAGTTGG+TGG 0.463983 1_2:+5286716 None:intergenic
GACACTGTTTACTTCACAAA+CGG 0.464277 1_2:-5285014 Msa0051190:CDS
CTGGTCTCCGTTTAGCATAT+GGG 0.464781 1_2:+5283662 None:intergenic
GAAAAGAGGAGGTAAATGAT+TGG 0.467251 1_2:+5284020 None:intergenic
TGATGATGATACAGCTAATT+GGG 0.467582 1_2:+5283328 None:intergenic
TACACAATTAGAACAATTCA+AGG 0.469316 1_2:-5289540 Msa0051190:CDS
AGTTGGTGGAGATGAGAATA+TGG 0.469785 1_2:+5286730 None:intergenic
TGATGCAAGTTCATATATCT+GGG 0.470555 1_2:-5283546 Msa0051190:CDS
GGTAGGAAGCACCAAATCTT+GGG 0.471144 1_2:-5286200 Msa0051190:intron
ATGCTGATTGAAGGCATTTG+TGG 0.474680 1_2:-5287816 Msa0051190:CDS
AACTCCACTAGGACCTTTAA+GGG 0.479312 1_2:+5285067 None:intergenic
TTGCAAATAACAATTCCATA+AGG 0.480068 1_2:-5287100 Msa0051190:CDS
GTCAGTTCAGGCACCGCCAC+CGG 0.482612 1_2:-5290790 Msa0051190:CDS
GTGGTATGTGTGGTTGGACT+CGG 0.482699 1_2:-5289281 Msa0051190:CDS
TATCTCCTGCAGCTGCTACT+GGG 0.483276 1_2:-5287139 Msa0051190:intron
TCACCTGAAGCCCGATGCTT+CGG 0.483967 1_2:+5287936 None:intergenic
CTGAGCACATGTGCCGGAGG+GGG 0.486945 1_2:+5287959 None:intergenic
GTACTTTCTTCGCCGCAGCC+AGG 0.487390 1_2:-5287997 Msa0051190:CDS
ACTCTATCCCATATGCTAAA+GGG 0.488518 1_2:-5283702 Msa0051190:CDS
GGCATTAGCATGCTGATTGA+AGG 0.489200 1_2:-5287825 Msa0051190:CDS
AAACCAACCCATATGCTAAA+CGG 0.489300 1_2:-5283669 Msa0051190:CDS
ATCACTTGCTTTCTATCTAC+CGG 0.489632 1_2:-5289900 Msa0051190:CDS
CTAACTGGACCATGACCATC+AGG 0.492436 1_2:+5287005 None:intergenic
CATGTGCTCAGCCGAAGCAT+CGG 0.494578 1_2:-5287947 Msa0051190:CDS
CCTCCCAATTAACTGGCAAA+AGG 0.496383 1_2:-5284693 Msa0051190:CDS
AATAAATTTACGCTTGTCCT+CGG 0.500280 1_2:-5284655 Msa0051190:CDS
TTGGGAGGGAGCTGCAACAG+GGG 0.501107 1_2:+5284708 None:intergenic
CTTGACCAGCAAAATGGGAA+TGG 0.504154 1_2:-5283508 Msa0051190:CDS
TCAACACATTGCTTCAGACT+TGG 0.504520 1_2:-5289955 Msa0051190:CDS
CGGCTGAGCACATGTGCCGG+AGG 0.507745 1_2:+5287956 None:intergenic
AAATTCTGAGGTGGTGGTCC+CGG 0.508298 1_2:+5290771 None:intergenic
GCAATTCAAGAGGCGAATGT+TGG 0.508378 1_2:-5283732 Msa0051190:CDS
TTGACCAGCAAAATGGGAAT+GGG 0.509143 1_2:-5283507 Msa0051190:CDS
AAAAGAGGAGGTAAATGATT+GGG 0.509472 1_2:+5284021 None:intergenic
AGCTGAAGAAGCTGTTCCGC+TGG 0.512891 1_2:+5290720 None:intergenic
TGCACCAGAAAGCCTGGCTG+CGG 0.513047 1_2:+5287985 None:intergenic
CAGTTAGAACCAATGGTGGA+TGG 0.514008 1_2:-5286989 Msa0051190:CDS
TCCCATTGTCATTGTACCTG+TGG 0.514468 1_2:-5289300 Msa0051190:CDS
GGCTGAGCACATGTGCCGGA+GGG 0.515040 1_2:+5287957 None:intergenic
CTTCGGCTGAGCACATGTGC+CGG 0.519002 1_2:+5287953 None:intergenic
TAGGAATATATTCAGACAAA+CGG 0.520368 1_2:+5286567 None:intergenic
CTTGGTGGTTATCTGTGTCA+TGG 0.520942 1_2:+5290820 None:intergenic
ACCACAGGTACAATGACAAT+GGG 0.521905 1_2:+5289299 None:intergenic
TGGACTCGGTCTGTTCGCGA+GGG 0.523642 1_2:-5289267 Msa0051190:CDS
TGCTACATACCATGGTGCAC+GGG 0.526388 1_2:+5288819 None:intergenic
GAACTGACGGTGGTGCTTGG+TGG 0.527613 1_2:+5290805 None:intergenic
TAAGAGAGCACATGATTTGG+TGG 0.528009 1_2:-5284608 Msa0051190:CDS
AGCAACCTTGTACCTCAAAT+GGG 0.529370 1_2:-5290207 Msa0051190:CDS
CAAGTTCATATATCTGGGGT+TGG 0.532218 1_2:-5283541 Msa0051190:CDS
AGTCATGTCTTTGGGATGAT+GGG 0.533189 1_2:-5288414 Msa0051190:CDS
CATCAGCCATGCACTTCTCA+GGG 0.533895 1_2:+5284746 None:intergenic
AATGTTATTATCACGAACAA+AGG 0.534520 1_2:+5283612 None:intergenic
TTGCTACATACCATGGTGCA+CGG 0.537859 1_2:+5288818 None:intergenic
TTTGAAGCACCTTCATGCTA+AGG 0.538653 1_2:-5288989 Msa0051190:CDS
GTGACTTACCCATCCACCAT+TGG 0.539247 1_2:+5286980 None:intergenic
ATATCTGGGGTTGGAAAGGA+AGG 0.539398 1_2:-5283532 Msa0051190:CDS
CATGACTAGCTTTGAATATG+GGG 0.540448 1_2:+5288430 None:intergenic
GTTCGCGAGGGGCTTTCCAA+TGG 0.542911 1_2:-5289255 Msa0051190:intron
ACCATGGTGCACGGGTCAGA+AGG 0.543944 1_2:+5288827 None:intergenic
ACAATCAGCAGAAGGAGCAT+AGG 0.544491 1_2:+5289107 None:intergenic
TTGGACTCGGTCTGTTCGCG+AGG 0.546006 1_2:-5289268 Msa0051190:CDS
CAACTGTGGCAATAATAGTT+GGG 0.546683 1_2:-5286712 Msa0051190:CDS
TCATATATCTGGGGTTGGAA+AGG 0.547674 1_2:-5283536 Msa0051190:CDS
CATGGTCCAGTTAGAACCAA+TGG 0.547851 1_2:-5286996 Msa0051190:CDS
CTGTTTACTTCACAAACGGT+TGG 0.547920 1_2:-5285010 Msa0051190:CDS
TCCCACCCATTTGAGGTACA+AGG 0.549191 1_2:+5290202 None:intergenic
TCTCCGTTTAGCATATGGGT+TGG 0.549618 1_2:+5283666 None:intergenic
AGTCCAAAATTCTGAGGTGG+TGG 0.551027 1_2:+5290765 None:intergenic
GCATCCATCGTGCATAGATG+TGG 0.553217 1_2:-5284067 Msa0051190:CDS
TCACAAACAAGAACGTTAGC+AGG 0.554809 1_2:+5283447 None:intergenic
GTACCTGTGGTATGTGTGGT+TGG 0.555163 1_2:-5289287 Msa0051190:CDS
GCTGAGCACATGTGCCGGAG+GGG 0.557764 1_2:+5287958 None:intergenic
GGAGGGAGCTGCAACAGGGG+TGG 0.557934 1_2:+5284711 None:intergenic
AGGCTTCCGGTGATTATGGG+TGG 0.559262 1_2:-5289923 Msa0051190:CDS
TGGACTTAGTTTCTGTGAGA+AGG 0.559379 1_2:-5284895 Msa0051190:CDS
GGTGGTGCTATGAAGAAATT+GGG 0.559533 1_2:+5286135 None:intergenic
ATATCTTCCTTGGATATAGT+AGG 0.561320 1_2:-5289491 Msa0051190:CDS
TCCTTGGATATAGTAGGACA+TGG 0.564119 1_2:-5289485 Msa0051190:CDS
AACGCCATGAAGGATTTGAA+TGG 0.564370 1_2:+5290685 None:intergenic
GTACCCCACTGAAATGGGTA+TGG 0.565676 1_2:+5288453 None:intergenic
AGCGGCGAAAGCCCAAATAA+CGG 0.565764 1_2:+5288924 None:intergenic
CCAACTATTATTGCCACAGT+TGG 0.566946 1_2:+5286713 None:intergenic
TATGATGAGCCTTAGCATGA+AGG 0.568732 1_2:+5288980 None:intergenic
ATGTTCCATACCCATTTCAG+TGG 0.568754 1_2:-5288458 Msa0051190:CDS
TCAGTTCAGGCACCGCCACC+GGG 0.569461 1_2:-5290789 Msa0051190:CDS
AGTTAGAACCAATGGTGGAT+GGG 0.570107 1_2:-5286988 Msa0051190:intron
GGTGGCGGTGCCTGAACTGA+CGG 0.570549 1_2:+5290792 None:intergenic
GTTACGCTTCGCAATTCAAG+AGG 0.574465 1_2:-5283742 Msa0051190:CDS
ACCTTGTACCTCAAATGGGT+GGG 0.574764 1_2:-5290203 Msa0051190:CDS
AAAAGATACTAACGCCATGA+AGG 0.576140 1_2:+5290675 None:intergenic
TGCTTCCCCTGAGAAGTGCA+TGG 0.578286 1_2:-5284752 Msa0051190:CDS
ATATTCCACACAACTCCACT+AGG 0.578782 1_2:+5285056 None:intergenic
GGTTCCTTTCCAGAAAAGGA+AGG 0.579848 1_2:-5286627 Msa0051190:CDS
TGTATGCACCAGCAACGGTA+AGG 0.580085 1_2:+5288899 None:intergenic
TGTTCCATACCCATTTCAGT+GGG 0.582233 1_2:-5288457 Msa0051190:CDS
AACCTTGTACCTCAAATGGG+TGG 0.584925 1_2:-5290204 Msa0051190:CDS
AACAAAATATGGAAAAGAGG+AGG 0.585641 1_2:+5284009 None:intergenic
TTCTGGAAAGGAACCCACCA+TGG 0.587333 1_2:+5286635 None:intergenic
TTCTGAGGTGGTGGTCCCGG+TGG 0.588875 1_2:+5290774 None:intergenic
CCTTGGATATAGTAGGACAT+GGG 0.589670 1_2:-5289484 Msa0051190:CDS
CTTGCAGATTGTGTGCAGAT+CGG 0.590049 1_2:-5289134 Msa0051190:CDS
AGGCTCATCATATACTTGAG+AGG 0.595130 1_2:-5288969 Msa0051190:CDS
TACCACAGGTACAATGACAA+TGG 0.595377 1_2:+5289298 None:intergenic
ATTGGGAGGGAGCTGCAACA+GGG 0.596413 1_2:+5284707 None:intergenic
CCCATGTCCTACTATATCCA+AGG 0.596457 1_2:+5289484 None:intergenic
TCATTTATGATCGACATCAC+CGG 0.597681 1_2:+5289881 None:intergenic
GGACTCGGTCTGTTCGCGAG+GGG 0.599513 1_2:-5289266 Msa0051190:CDS
TGGACAGAGGACTTCCATGG+TGG 0.609884 1_2:-5286649 Msa0051190:CDS
GGACAGAGGACTTCCATGGT+GGG 0.611007 1_2:-5286648 Msa0051190:CDS
AGTGATCCACCCATAATCAC+CGG 0.611658 1_2:+5289917 None:intergenic
ACGTGAAACATTGATATCGC+CGG 0.611796 1_2:+5283973 None:intergenic
CATTGTACCTGTGGTATGTG+TGG 0.617786 1_2:-5289291 Msa0051190:CDS
AGTATTGTATGCACCAGCAA+CGG 0.621068 1_2:+5288894 None:intergenic
GGCTGCGGCGAAGAAAGTAC+CGG 0.621910 1_2:+5288000 None:intergenic
AAGGTCCTAGTGGAGTTGTG+TGG 0.624686 1_2:-5285061 Msa0051190:CDS
CTTGAAAGTCCAAAATTCTG+AGG 0.626530 1_2:+5290759 None:intergenic
CATCCATCGTGCATAGATGT+GGG 0.626633 1_2:-5284066 Msa0051190:CDS
CATCGTGCATAGATGTGGGA+AGG 0.628421 1_2:-5284062 Msa0051190:CDS
GTTCCTTTCCAGAAAAGGAA+GGG 0.629131 1_2:-5286626 Msa0051190:CDS
GGGTCCCACTTGGACTCCAG+CGG 0.630127 1_2:-5290736 Msa0051190:CDS
ATAGCAGCGAATATTGGGAG+AGG 0.630706 1_2:+5287268 None:intergenic
GTGACCCTTAAAGGTCCTAG+TGG 0.630968 1_2:-5285071 Msa0051190:CDS
CTGTTCCGCTGGAGTCCAAG+TGG 0.633722 1_2:+5290731 None:intergenic
CTGTGGACAGAGGACTTCCA+TGG 0.638844 1_2:-5286652 Msa0051190:CDS
ACCAGCAACGGTAAGGATAG+CGG 0.639172 1_2:+5288906 None:intergenic
GTCATGAACACTGCACCTGA+TGG 0.642428 1_2:-5287020 Msa0051190:CDS
GTGTTCATGACAAAATATTG+TGG 0.643236 1_2:+5287032 None:intergenic
TGTTCCGCTGGAGTCCAAGT+GGG 0.644188 1_2:+5290732 None:intergenic
CTTGGATATAGTAGGACATG+GGG 0.644457 1_2:-5289483 Msa0051190:CDS
GGTCCAGTTAGAACCAATGG+TGG 0.646071 1_2:-5286993 Msa0051190:CDS
ATTCTCATCTCCACCAACTG+TGG 0.646273 1_2:-5286726 Msa0051190:CDS
AATTGAGATCCCGAGAAACA+AGG 0.647055 1_2:+5287055 None:intergenic
TGAAGCCAAACAAACAGCTG+TGG 0.648330 1_2:-5286669 Msa0051190:CDS
GAAAGTCCAAAATTCTGAGG+TGG 0.648379 1_2:+5290762 None:intergenic
ACCTTCTGACCCGTGCACCA+TGG 0.650262 1_2:-5288828 Msa0051190:intron
AGTCCAACCACACATACCAC+AGG 0.653099 1_2:+5289284 None:intergenic
AAGTTGTTGTTGAAAATCGG+TGG 0.662291 1_2:+5286117 None:intergenic
AGGAAGCACCAAATCTTGGG+AGG 0.669254 1_2:-5286197 Msa0051190:CDS
CTTCCCACATCTATGCACGA+TGG 0.671357 1_2:+5284063 None:intergenic
GCCTGTAACAAAGAACACTC+AGG 0.672455 1_2:-5284586 Msa0051190:intron
AAACAAACAGCTGTGGACAG+AGG 0.674809 1_2:-5286662 Msa0051190:CDS
CGACATGAACTGAAATGCAG+CGG 0.675891 1_2:+5283267 None:intergenic
GTTGTGTTACAATCAGCAGA+AGG 0.677477 1_2:+5289099 None:intergenic
CAAGGACACAAACAAGTCTG+TGG 0.678532 1_2:-5284812 Msa0051190:CDS
AACACTGCACCTGATGGTCA+TGG 0.680577 1_2:-5287014 Msa0051190:CDS
ATCAGCCATGCACTTCTCAG+GGG 0.683978 1_2:+5284747 None:intergenic
ATGACTAGCTTTGAATATGG+GGG 0.701834 1_2:+5288431 None:intergenic
GGCGGTGCCTGAACTGACGG+TGG 0.713228 1_2:+5290795 None:intergenic
GTTCCATACCCATTTCAGTG+GGG 0.714740 1_2:-5288456 Msa0051190:CDS
ATATATTCAGACAAACGGAG+AGG 0.715929 1_2:+5286572 None:intergenic
GATGCAAGTTCATATATCTG+GGG 0.765392 1_2:-5283545 Msa0051190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATTTTTATTTTTT+TGG - chr1_2:5284078-5284097 Msa0051190:intron 0.0%
!!! TTTTTTATTTTTATTTTTTT+GGG - chr1_2:5284079-5284098 Msa0051190:intron 0.0%
!! TTAAAATAAAGAAAAAGAAA+CGG + chr1_2:5283434-5283453 None:intergenic 10.0%
!!! AATTTTTTTTTTACAAGTTA+AGG + chr1_2:5283821-5283840 None:intergenic 10.0%
!!! AATTGAAATTTTTAGAATTT+GGG + chr1_2:5284724-5284743 None:intergenic 10.0%
!!! AAATTGAAATTTTTAGAATT+TGG + chr1_2:5284725-5284744 None:intergenic 10.0%
!! AATTAAAAATACTAAGAATA+AGG + chr1_2:5286083-5286102 None:intergenic 10.0%
!! AAAAACAAACAAAATTTAAA+AGG + chr1_2:5288485-5288504 None:intergenic 10.0%
!! ATAATTAAGTAAATTGTTTA+AGG - chr1_2:5288706-5288725 Msa0051190:intron 10.0%
!! ACAAAAAAAAAAATTGAAAA+AGG + chr1_2:5289886-5289905 None:intergenic 10.0%
!! TTATAATTAATACTAGTAAA+AGG + chr1_2:5290093-5290112 None:intergenic 10.0%
!!! TTTGTTAAAATATTTAAAAC+CGG - chr1_2:5290440-5290459 Msa0051190:intron 10.0%
!! TTCAATGAAAAAAAAAAGTT+TGG + chr1_2:5283539-5283558 None:intergenic 15.0%
!!! TTTTTTAAAAAAAGTTGCTT+TGG - chr1_2:5283979-5283998 Msa0051190:CDS 15.0%
!!! GTTTATTAGTTAATATCTTT+TGG - chr1_2:5285040-5285059 Msa0051190:CDS 15.0%
!!! TTTCAAACTTTTATTATAGT+AGG + chr1_2:5285240-5285259 None:intergenic 15.0%
!! ACTATAATAAAAGTTTGAAA+TGG - chr1_2:5285240-5285259 Msa0051190:intron 15.0%
!!! TCTTAGTATTTTTAATTCTA+CGG - chr1_2:5286086-5286105 Msa0051190:intron 15.0%
!! AATTAAGTTAATTCTTCAAA+TGG + chr1_2:5286537-5286556 None:intergenic 15.0%
!!! TTAAATATTGATTATAGACA+TGG - chr1_2:5286860-5286879 Msa0051190:intron 15.0%
!! AATTCTTAACAAATAATCAA+TGG + chr1_2:5286888-5286907 None:intergenic 15.0%
!! TATATATGAAAATGACAAAA+GGG + chr1_2:5287542-5287561 None:intergenic 15.0%
!! ATATATATGAAAATGACAAA+AGG + chr1_2:5287543-5287562 None:intergenic 15.0%
!!! TTTCATTTTTATTTTCAACA+TGG + chr1_2:5288372-5288391 None:intergenic 15.0%
!! GTATAAAATATAAAAAACCA+TGG + chr1_2:5288588-5288607 None:intergenic 15.0%
!! AATAAAATTGTTAATTAACG+TGG - chr1_2:5288854-5288873 Msa0051190:CDS 15.0%
!! AAAAAAAAAATTGAAAAAGG+AGG + chr1_2:5289883-5289902 None:intergenic 15.0%
!!! AATCATCAGTTTTAAATAAA+AGG + chr1_2:5290322-5290341 None:intergenic 15.0%
!! CAAAAATTACTTAAAGATAA+GGG + chr1_2:5290552-5290571 None:intergenic 15.0%
!! ACAAAAATTACTTAAAGATA+AGG + chr1_2:5290553-5290572 None:intergenic 15.0%
!!! AAAAAGTACTCATGAAAAAA+AGG + chr1_2:5283374-5283393 None:intergenic 20.0%
!! TGTGTGAGAAAAAAAAAAAA+TGG - chr1_2:5283588-5283607 Msa0051190:CDS 20.0%
!! GTGTGAGAAAAAAAAAAAAT+GGG - chr1_2:5283589-5283608 Msa0051190:CDS 20.0%
!!! GTAATTGTTGTTTTTTGTAA+CGG - chr1_2:5284325-5284344 Msa0051190:intron 20.0%
!! ATGAAAACATATTGTGATTT+CGG - chr1_2:5284624-5284643 Msa0051190:CDS 20.0%
!! CAAACATATAAACTTATGTT+CGG + chr1_2:5284680-5284699 None:intergenic 20.0%
!! ATAAGTTTATATGTTTGTAG+AGG - chr1_2:5284683-5284702 Msa0051190:CDS 20.0%
!!! AAATTTTTAGAATTTGGGTT+GGG + chr1_2:5284719-5284738 None:intergenic 20.0%
!! TAGCAAAAGTAGTATATTTA+GGG - chr1_2:5285631-5285650 Msa0051190:intron 20.0%
!!! CTTATGTATAAGCTATTTTT+AGG + chr1_2:5285845-5285864 None:intergenic 20.0%
!!! ATTAAACTTTTTTTCCAAAC+AGG - chr1_2:5285873-5285892 Msa0051190:intron 20.0%
!!! AACAATTATGTTTTTATTCC+AGG - chr1_2:5285947-5285966 Msa0051190:intron 20.0%
!!! ATGATTTTATGCTCTATTTT+TGG - chr1_2:5287020-5287039 Msa0051190:CDS 20.0%
!! ATAATTTAATGTGCATGTAA+TGG + chr1_2:5287229-5287248 None:intergenic 20.0%
!!! ATAAGGAATATCTATGTTTT+CGG - chr1_2:5287349-5287368 Msa0051190:intron 20.0%
!! TATATATTAAGAAAAGTAGC+CGG - chr1_2:5287556-5287575 Msa0051190:intron 20.0%
!! ATATATGAAATCAACCAAAA+CGG + chr1_2:5287625-5287644 None:intergenic 20.0%
!!! ATTTTTATTTTCAACATGGT+AGG + chr1_2:5288368-5288387 None:intergenic 20.0%
!! ACAAACAAAATTTAAAAGGT+GGG + chr1_2:5288481-5288500 None:intergenic 20.0%
!! AACAAACAAAATTTAAAAGG+TGG + chr1_2:5288482-5288501 None:intergenic 20.0%
!!! TGATTTTCTCAAATAATTAG+CGG - chr1_2:5288990-5289009 Msa0051190:CDS 20.0%
!! AATAATTATGTTTAGCTGTT+AGG - chr1_2:5289201-5289220 Msa0051190:intron 20.0%
!!! GAAATTTGTATTTTAATTGC+AGG - chr1_2:5289288-5289307 Msa0051190:CDS 20.0%
!!! AAATTGTCTGAAAATGTTTT+AGG + chr1_2:5289319-5289338 None:intergenic 20.0%
!!! TTTGAAGTTTTAATCTTTGA+TGG - chr1_2:5289517-5289536 Msa0051190:CDS 20.0%
!! ATTAATACTAGTAAAAGGAA+GGG + chr1_2:5290088-5290107 None:intergenic 20.0%
!! AATTAATACTAGTAAAAGGA+AGG + chr1_2:5290089-5290108 None:intergenic 20.0%
!! TTTAACAAAATATGGAAAAG+AGG + chr1_2:5290429-5290448 None:intergenic 20.0%
!! AGAGATAAAACAACATAATT+GGG + chr1_2:5290526-5290545 None:intergenic 20.0%
!! CGTGATAATAACATTAAATT+TGG - chr1_2:5290828-5290847 Msa0051190:CDS 20.0%
! AAAAAAAGGACCAGTTATTA+AGG + chr1_2:5283360-5283379 None:intergenic 25.0%
!!! TTTTTCATGAGTACTTTTTC+TGG - chr1_2:5283375-5283394 Msa0051190:three_prime_UTR 25.0%
! AAAGAAAAAGAAACGGTTAT+GGG + chr1_2:5283427-5283446 None:intergenic 25.0%
! TAAAGAAAAAGAAACGGTTA+TGG + chr1_2:5283428-5283447 None:intergenic 25.0%
!!! ATGTTAGTATTGCTAGTTTT+TGG - chr1_2:5284351-5284370 Msa0051190:intron 25.0%
! ACAATAACAACAACAAAATC+AGG + chr1_2:5284404-5284423 None:intergenic 25.0%
! GTCTCTCATTATATGAAATA+AGG - chr1_2:5284653-5284672 Msa0051190:CDS 25.0%
!!! AATTTTTAGAATTTGGGTTG+GGG + chr1_2:5284718-5284737 None:intergenic 25.0%
!!! GAAATTTTTAGAATTTGGGT+TGG + chr1_2:5284720-5284739 None:intergenic 25.0%
!! TTGAATCACCAATTTTATGT+TGG + chr1_2:5284830-5284849 None:intergenic 25.0%
! TACACAATTAGAACAATTCA+AGG - chr1_2:5284892-5284911 Msa0051190:CDS 25.0%
!! TTTCTCTCTTTATCATCTTT+TGG - chr1_2:5285072-5285091 Msa0051190:CDS 25.0%
!!! TTTTTTTCTCTTTCTTTACC+AGG - chr1_2:5285101-5285120 Msa0051190:CDS 25.0%
! TATAGTAGGTAATTTATTCG+TGG + chr1_2:5285226-5285245 None:intergenic 25.0%
! AAACTCATAAGTGAATGTTT+CGG + chr1_2:5285375-5285394 None:intergenic 25.0%
!! ACTTATTTGAGTCTTTTCTT+TGG + chr1_2:5285565-5285584 None:intergenic 25.0%
! GTAGCAAAAGTAGTATATTT+AGG - chr1_2:5285630-5285649 Msa0051190:intron 25.0%
!! TAGTATATTTAGGGTCTATT+TGG - chr1_2:5285640-5285659 Msa0051190:intron 25.0%
! ATCAACAATAATGGTAGTAT+AGG + chr1_2:5286344-5286363 None:intergenic 25.0%
! AACTGATGATCTAATTAATC+TGG - chr1_2:5286376-5286395 Msa0051190:intron 25.0%
!! CTTGTAACTTTTGTGATATA+GGG - chr1_2:5286586-5286605 Msa0051190:CDS 25.0%
! AAAAAATGTGAATTTGCCAA+TGG + chr1_2:5286792-5286811 None:intergenic 25.0%
! TATTTAACCAAATAAAACCC+AGG + chr1_2:5286847-5286866 None:intergenic 25.0%
! GATAATTGTAGTGAAAATGT+CGG - chr1_2:5286939-5286958 Msa0051190:intron 25.0%
! ATTACACTTCAATTCTTGTT+TGG - chr1_2:5287051-5287070 Msa0051190:CDS 25.0%
! TAAGTAACATTTAAGTGCAA+TGG + chr1_2:5287083-5287102 None:intergenic 25.0%
! AAATTTACCTGAAATAGACA+TGG + chr1_2:5287123-5287142 None:intergenic 25.0%
!! ATGTCTATTTCAGGTAAATT+TGG - chr1_2:5287122-5287141 Msa0051190:CDS 25.0%
!!! GCTATATACTGTGTTTTATT+CGG - chr1_2:5287182-5287201 Msa0051190:intron 25.0%
! GATAGAGAGATAATTGTATA+AGG + chr1_2:5287277-5287296 None:intergenic 25.0%
! TTGCAAATAACAATTCCATA+AGG - chr1_2:5287332-5287351 Msa0051190:intron 25.0%
! GAAAACATAGATATTCCTTA+TGG + chr1_2:5287350-5287369 None:intergenic 25.0%
!! ATGTTACTAAAATACCGTTT+TGG - chr1_2:5287608-5287627 Msa0051190:intron 25.0%
! TAGGAATATATTCAGACAAA+CGG + chr1_2:5287868-5287887 None:intergenic 25.0%
!! TGCCAAACAATTTTCATTTT+AGG - chr1_2:5287969-5287988 Msa0051190:CDS 25.0%
! TGCCTAAAATGAAAATTGTT+TGG + chr1_2:5287974-5287993 None:intergenic 25.0%
!! ATTAGTAGCCAAATTTTATC+TGG - chr1_2:5287994-5288013 Msa0051190:CDS 25.0%
!! TTAGTAGCCAAATTTTATCT+GGG - chr1_2:5287995-5288014 Msa0051190:CDS 25.0%
! AATTTACCCCAGATAAAATT+TGG + chr1_2:5288005-5288024 None:intergenic 25.0%
!! TACAAGTTGTTGTTGAAAAT+CGG + chr1_2:5288321-5288340 None:intergenic 25.0%
!!! AAAGTTTTCATTTTTTGCCA+TGG - chr1_2:5288568-5288587 Msa0051190:intron 25.0%
!! AAATTGTTTAAGGTTCTGTT+TGG - chr1_2:5288716-5288735 Msa0051190:intron 25.0%
!! AATTGTTTAAGGTTCTGTTT+GGG - chr1_2:5288717-5288736 Msa0051190:intron 25.0%
! TACAGTGTAATTATATGTGT+CGG + chr1_2:5288965-5288984 None:intergenic 25.0%
! TGAGATTAAAACATACATTG+AGG + chr1_2:5289264-5289283 None:intergenic 25.0%
!!! ATGTATGTTTTAATCTCAGA+TGG - chr1_2:5289266-5289285 Msa0051190:CDS 25.0%
!!! TCTTATTTTGTTGGAAAATG+TGG - chr1_2:5289565-5289584 Msa0051190:intron 25.0%
! ACAAGCGTAAATTTATTAAC+AGG + chr1_2:5289774-5289793 None:intergenic 25.0%
!! TAAGCTCTGACATAAATATA+AGG + chr1_2:5290298-5290317 None:intergenic 25.0%
! GTAAATGAAGAATCACAAAA+GGG + chr1_2:5290501-5290520 None:intergenic 25.0%
! GAGAGATAAAACAACATAAT+TGG + chr1_2:5290527-5290546 None:intergenic 25.0%
! AATGTTATTATCACGAACAA+AGG + chr1_2:5290823-5290842 None:intergenic 25.0%
!! ACAGAAATCAATTTTCAATG+TGG - chr1_2:5291009-5291028 Msa0051190:five_prime_UTR 25.0%
AACGTAGTAACCTTAATAAC+TGG - chr1_2:5283347-5283366 Msa0051190:three_prime_UTR 30.0%
! TCAGAATTTTGGACTTTCAA+GGG - chr1_2:5283675-5283694 Msa0051190:CDS 30.0%
GATCACTTGATGAAAAAGAT+TGG - chr1_2:5284273-5284292 Msa0051190:intron 30.0%
!!! GTATTGCTAGTTTTTGGTAA+TGG - chr1_2:5284357-5284376 Msa0051190:intron 30.0%
!! TATTGTTTTGTAGCACGATA+AGG - chr1_2:5284418-5284437 Msa0051190:intron 30.0%
AGTTTATATGTTTGTAGAGG+TGG - chr1_2:5284686-5284705 Msa0051190:CDS 30.0%
TGCTTTGTCCAACATAAAAT+TGG - chr1_2:5284819-5284838 Msa0051190:CDS 30.0%
! TCTTTTGTCAATATCTTCCT+TGG - chr1_2:5284931-5284950 Msa0051190:CDS 30.0%
ATATCTTCCTTGGATATAGT+AGG - chr1_2:5284941-5284960 Msa0051190:CDS 30.0%
! ACAACAACCTTTTACATTTC+CGG - chr1_2:5285410-5285429 Msa0051190:intron 30.0%
AATACGCTGAAAACAACTTA+TGG + chr1_2:5285748-5285767 None:intergenic 30.0%
AACTTGGAACAGTTAAATTG+AGG + chr1_2:5285900-5285919 None:intergenic 30.0%
TCAGAAAGAGAATTTGAACT+TGG + chr1_2:5285916-5285935 None:intergenic 30.0%
!! ACATGACTAGCTTTGAATAT+GGG + chr1_2:5286006-5286025 None:intergenic 30.0%
AAGTTTCTACATGTCATATC+TGG + chr1_2:5286155-5286174 None:intergenic 30.0%
TTTAATGTAGCTACATGTGT+CGG - chr1_2:5286196-5286215 Msa0051190:CDS 30.0%
! AATTTTACAGCTTCATTCTC+TGG - chr1_2:5286295-5286314 Msa0051190:intron 30.0%
TAACAACGGATCAACAATAA+TGG + chr1_2:5286353-5286372 None:intergenic 30.0%
! GATCATCAGTTTGATAACAA+CGG + chr1_2:5286367-5286386 None:intergenic 30.0%
! AAATTTTGAATGCAGTCAAC+CGG - chr1_2:5286413-5286432 Msa0051190:intron 30.0%
CCTATATCACAAAAGTTACA+AGG + chr1_2:5286588-5286607 None:intergenic 30.0%
! CCTTGTAACTTTTGTGATAT+AGG - chr1_2:5286585-5286604 Msa0051190:CDS 30.0%
! TTATGTTTAGTGTTCTGAGT+AGG - chr1_2:5286701-5286720 Msa0051190:CDS 30.0%
! GATTTTTCCATGTCTATTTC+AGG - chr1_2:5287113-5287132 Msa0051190:CDS 30.0%
AGTATATAGCAGCGAATATT+GGG + chr1_2:5287172-5287191 None:intergenic 30.0%
ATTTAATGTGCATGTAATGG+TGG + chr1_2:5287226-5287245 None:intergenic 30.0%
GTGTTCATGACAAAATATTG+TGG + chr1_2:5287403-5287422 None:intergenic 30.0%
ACAAAAGGGACTTGTAAAAA+GGG + chr1_2:5287528-5287547 None:intergenic 30.0%
AATAGACACGATAAATACAC+CGG + chr1_2:5287578-5287597 None:intergenic 30.0%
TATTCCTAGTAGATTTCTCT+AGG - chr1_2:5287880-5287899 Msa0051190:intron 30.0%
TATTCCTAGAGAAATCTACT+AGG + chr1_2:5287887-5287906 None:intergenic 30.0%
GCAATTGTGCTCATTAAATT+AGG + chr1_2:5287935-5287954 None:intergenic 30.0%
! TAGTAGCCAAATTTTATCTG+GGG - chr1_2:5287996-5288015 Msa0051190:CDS 30.0%
TGAAATGGATGAACTGAAAA+TGG + chr1_2:5288277-5288296 None:intergenic 30.0%
TATGAAGAAATTGGGTGAAA+TGG + chr1_2:5288292-5288311 None:intergenic 30.0%
CTAATATGAACACTTCAGAA+GGG + chr1_2:5288395-5288414 None:intergenic 30.0%
! GAAGTGTTCATATTAGGATT+TGG - chr1_2:5288399-5288418 Msa0051190:CDS 30.0%
ATTTACACAGATAGTGTTTG+CGG + chr1_2:5288815-5288834 None:intergenic 30.0%
CATTAATGACCTATGAAGTA+CGG - chr1_2:5288877-5288896 Msa0051190:CDS 30.0%
ACTATATTACAACTGTGTGA+GGG - chr1_2:5289066-5289085 Msa0051190:intron 30.0%
AATTTGAACTTTGTACCTTG+AGG - chr1_2:5289089-5289108 Msa0051190:intron 30.0%
ACATGATTTACATACACTTG+AGG + chr1_2:5289148-5289167 None:intergenic 30.0%
! TTCCTTTTCTTCAAGTACAA+TGG - chr1_2:5289484-5289503 Msa0051190:CDS 30.0%
!! AATCAATACTGCTTTTGATG+CGG - chr1_2:5289647-5289666 Msa0051190:intron 30.0%
AATAAATTTACGCTTGTCCT+CGG - chr1_2:5289777-5289796 Msa0051190:intron 30.0%
! CTTTGCTCTGACTTTTAAAT+GGG + chr1_2:5289976-5289995 None:intergenic 30.0%
AATGAAGGGAAAGGTTAAAA+TGG + chr1_2:5290188-5290207 None:intergenic 30.0%
!! AGAAAAGTATCAGTTTGCTA+GGG + chr1_2:5290250-5290269 None:intergenic 30.0%
AACTGTTCAATTTCTTACAG+AGG - chr1_2:5290343-5290362 Msa0051190:intron 30.0%
AAAAGAGGAGGTAAATGATT+GGG + chr1_2:5290414-5290433 None:intergenic 30.0%
AACAAAATATGGAAAAGAGG+AGG + chr1_2:5290426-5290445 None:intergenic 30.0%
TATCAATGTTTCACGTACTA+TGG - chr1_2:5290466-5290485 Msa0051190:intron 30.0%
GGTAAATGAAGAATCACAAA+AGG + chr1_2:5290502-5290521 None:intergenic 30.0%
GATAAAACAACATAATTGGG+AGG + chr1_2:5290523-5290542 None:intergenic 30.0%
TGATGCAAGTTCATATATCT+GGG - chr1_2:5290886-5290905 Msa0051190:five_prime_UTR 30.0%
! TGATGATGATACAGCTAATT+GGG + chr1_2:5291107-5291126 None:intergenic 30.0%
CTTGAAAGTCCAAAATTCTG+AGG + chr1_2:5283676-5283695 None:intergenic 35.0%
! CTCAGAATTTTGGACTTTCA+AGG - chr1_2:5283674-5283693 Msa0051190:CDS 35.0%
! CAGAATTTTGGACTTTCAAG+GGG - chr1_2:5283676-5283695 Msa0051190:CDS 35.0%
AAAAGATACTAACGCCATGA+AGG + chr1_2:5283760-5283779 None:intergenic 35.0%
!!! TGCTAGTTTTTGGTAATGGT+AGG - chr1_2:5284361-5284380 Msa0051190:intron 35.0%
!!! GCTAGTTTTTGGTAATGGTA+GGG - chr1_2:5284362-5284381 Msa0051190:intron 35.0%
CAGACATAAACAACAATGTC+TGG + chr1_2:5284454-5284473 None:intergenic 35.0%
!! CAGACATTGTTGTTTATGTC+TGG - chr1_2:5284452-5284471 Msa0051190:intron 35.0%
ATCACTTGCTTTCTATCTAC+CGG - chr1_2:5284532-5284551 Msa0051190:intron 35.0%
TCATTTATGATCGACATCAC+CGG + chr1_2:5284554-5284573 None:intergenic 35.0%
TTATCTGCATTGCCGTTATT+TGG - chr1_2:5285496-5285515 Msa0051190:intron 35.0%
TATCTGCATTGCCGTTATTT+GGG - chr1_2:5285497-5285516 Msa0051190:intron 35.0%
!! ACTACTTTTGCTACATACCA+TGG + chr1_2:5285624-5285643 None:intergenic 35.0%
GAAAACAACTTATGGACATG+AGG + chr1_2:5285740-5285759 None:intergenic 35.0%
AGTTAAATTGAGGTCCTGTT+TGG + chr1_2:5285890-5285909 None:intergenic 35.0%
!! ATGACTAGCTTTGAATATGG+GGG + chr1_2:5286004-5286023 None:intergenic 35.0%
!! CATGACTAGCTTTGAATATG+GGG + chr1_2:5286005-5286024 None:intergenic 35.0%
!! GACATGACTAGCTTTGAATA+TGG + chr1_2:5286007-5286026 None:intergenic 35.0%
TTCAAAGCTAGTCATGTCTT+TGG - chr1_2:5286009-5286028 Msa0051190:intron 35.0%
TCAAAGCTAGTCATGTCTTT+GGG - chr1_2:5286010-5286029 Msa0051190:intron 35.0%
TATGTAGCACTTCAGATCAA+AGG + chr1_2:5286257-5286276 None:intergenic 35.0%
CAATGGTATAACTAGACACT+AGG + chr1_2:5286775-5286794 None:intergenic 35.0%
CTAGTGTCTAGTTATACCAT+TGG - chr1_2:5286773-5286792 Msa0051190:intron 35.0%
CAGTATATAGCAGCGAATAT+TGG + chr1_2:5287173-5287192 None:intergenic 35.0%
!! TGTGTTTTATTCGGCATTGT+CGG - chr1_2:5287191-5287210 Msa0051190:intron 35.0%
GACAAAAGGGACTTGTAAAA+AGG + chr1_2:5287529-5287548 None:intergenic 35.0%
CAACTGTGGCAATAATAGTT+GGG - chr1_2:5287720-5287739 Msa0051190:intron 35.0%
ATATATTCAGACAAACGGAG+AGG + chr1_2:5287863-5287882 None:intergenic 35.0%
CACAATTGCCTTGTAAGATA+TGG - chr1_2:5287946-5287965 Msa0051190:CDS 35.0%
CAAAGGACAAAGCTAAAGTA+GGG + chr1_2:5288175-5288194 None:intergenic 35.0%
TCAAAGGACAAAGCTAAAGT+AGG + chr1_2:5288176-5288195 None:intergenic 35.0%
! CTCTCTACTTCTCTTTGAAA+TGG - chr1_2:5288211-5288230 Msa0051190:intron 35.0%
!! CTACTTCTCTTTGAAATGGT+AGG - chr1_2:5288215-5288234 Msa0051190:intron 35.0%
! AAGTTGTTGTTGAAAATCGG+TGG + chr1_2:5288318-5288337 None:intergenic 35.0%
CCTAATATGAACACTTCAGA+AGG + chr1_2:5288396-5288415 None:intergenic 35.0%
!! CCTTCTGAAGTGTTCATATT+AGG - chr1_2:5288393-5288412 Msa0051190:CDS 35.0%
! GCTGTTCATTATTCTTTTCC+TGG - chr1_2:5288787-5288806 Msa0051190:intron 35.0%
!! TTATATGTGTCGGTGTCTTT+TGG + chr1_2:5288955-5288974 None:intergenic 35.0%
TCTCAAATAATTAGCGGTGT+TGG - chr1_2:5288996-5289015 Msa0051190:intron 35.0%
ATAGTCATGACTATGAAGCA+CGG + chr1_2:5289051-5289070 None:intergenic 35.0%
GACTATATTACAACTGTGTG+AGG - chr1_2:5289065-5289084 Msa0051190:intron 35.0%
GACACTGTTTACTTCACAAA+CGG - chr1_2:5289418-5289437 Msa0051190:intron 35.0%
!!! AAGGCAGCTTCTTATTTTGT+TGG - chr1_2:5289556-5289575 Msa0051190:intron 35.0%
!! ATCAATACTGCTTTTGATGC+GGG - chr1_2:5289648-5289667 Msa0051190:intron 35.0%
! GATCCTTTTGCCAGTTAATT+GGG + chr1_2:5289745-5289764 None:intergenic 35.0%
! TGATCCTTTTGCCAGTTAAT+TGG + chr1_2:5289746-5289765 None:intergenic 35.0%
!! TTATGAGAAGTAGCTGCTTT+TGG + chr1_2:5289807-5289826 None:intergenic 35.0%
! TCATAAGAGAGCACATGATT+TGG - chr1_2:5289821-5289840 Msa0051190:intron 35.0%
! GCTTTGCTCTGACTTTTAAA+TGG + chr1_2:5289977-5289996 None:intergenic 35.0%
TAAAAGGAAGGGAAAGACTT+AGG + chr1_2:5290077-5290096 None:intergenic 35.0%
TTTAACCTTTCCCTTCATTC+TGG - chr1_2:5290189-5290208 Msa0051190:intron 35.0%
TTAACCTTTCCCTTCATTCT+GGG - chr1_2:5290190-5290209 Msa0051190:intron 35.0%
!!! TTTTTGAGACCCAGAATGAA+GGG + chr1_2:5290202-5290221 None:intergenic 35.0%
!!! TTTTTTGAGACCCAGAATGA+AGG + chr1_2:5290203-5290222 None:intergenic 35.0%
!! CAGAAAAGTATCAGTTTGCT+AGG + chr1_2:5290251-5290270 None:intergenic 35.0%
GAAAAGAGGAGGTAAATGAT+TGG + chr1_2:5290415-5290434 None:intergenic 35.0%
! TAACTTCTGTTTTGCAGTCA+GGG + chr1_2:5290674-5290693 None:intergenic 35.0%
AACTCTATCCCATATGCTAA+AGG - chr1_2:5290729-5290748 Msa0051190:CDS 35.0%
ACTCTATCCCATATGCTAAA+GGG - chr1_2:5290730-5290749 Msa0051190:CDS 35.0%
TTGTTCTCCCTTTAGCATAT+GGG + chr1_2:5290740-5290759 None:intergenic 35.0%
ATTGTTCTCCCTTTAGCATA+TGG + chr1_2:5290741-5290760 None:intergenic 35.0%
AAACCAACCCATATGCTAAA+CGG - chr1_2:5290763-5290782 Msa0051190:CDS 35.0%
GTGATGCAAGTTCATATATC+TGG - chr1_2:5290885-5290904 Msa0051190:five_prime_UTR 35.0%
GATGCAAGTTCATATATCTG+GGG - chr1_2:5290887-5290906 Msa0051190:five_prime_UTR 35.0%
! GTGATGATGATACAGCTAAT+TGG + chr1_2:5291108-5291127 None:intergenic 35.0%
! GAAAGTCCAAAATTCTGAGG+TGG + chr1_2:5283673-5283692 None:intergenic 40.0%
GCATCCATTCAAATCCTTCA+TGG - chr1_2:5283743-5283762 Msa0051190:CDS 40.0%
AACGCCATGAAGGATTTGAA+TGG + chr1_2:5283750-5283769 None:intergenic 40.0%
AAGCAACCTTGTACCTCAAA+TGG - chr1_2:5284224-5284243 Msa0051190:intron 40.0%
AGCAACCTTGTACCTCAAAT+GGG - chr1_2:5284225-5284244 Msa0051190:intron 40.0%
TCAACACATTGCTTCAGACT+TGG - chr1_2:5284477-5284496 Msa0051190:intron 40.0%
! ACATTGCTTCAGACTTGGTT+TGG - chr1_2:5284482-5284501 Msa0051190:intron 40.0%
!! TTCAGACTTGGTTTGGTTCA+AGG - chr1_2:5284489-5284508 Msa0051190:intron 40.0%
GATTCTCAGATGCGAAAGTT+TGG + chr1_2:5284586-5284605 None:intergenic 40.0%
AACTTTCGCATCTGAGAATC+AGG - chr1_2:5284586-5284605 Msa0051190:intron 40.0%
ACGTGTGGTTTATGCTTGTT+TGG - chr1_2:5284779-5284798 Msa0051190:CDS 40.0%
TATGACACTTGCACTTGTAG+AGG - chr1_2:5284863-5284882 Msa0051190:intron 40.0%
TCCTTGGATATAGTAGGACA+TGG - chr1_2:5284947-5284966 Msa0051190:CDS 40.0%
CCTTGGATATAGTAGGACAT+GGG - chr1_2:5284948-5284967 Msa0051190:CDS 40.0%
CTTGGATATAGTAGGACATG+GGG - chr1_2:5284949-5284968 Msa0051190:CDS 40.0%
ACCACAGGTACAATGACAAT+GGG + chr1_2:5285136-5285155 None:intergenic 40.0%
TACCACAGGTACAATGACAA+TGG + chr1_2:5285137-5285156 None:intergenic 40.0%
GTCGCACAAATACTTACCAT+TGG + chr1_2:5285196-5285215 None:intergenic 40.0%
GTTGTGTTACAATCAGCAGA+AGG + chr1_2:5285336-5285355 None:intergenic 40.0%
! TCTGCTGATTGTAACACAAC+AGG - chr1_2:5285336-5285355 Msa0051190:intron 40.0%
! TTTGAAGCACCTTCATGCTA+AGG - chr1_2:5285443-5285462 Msa0051190:intron 40.0%
TATGATGAGCCTTAGCATGA+AGG + chr1_2:5285455-5285474 None:intergenic 40.0%
AGGCTCATCATATACTTGAG+AGG - chr1_2:5285463-5285482 Msa0051190:intron 40.0%
AGTATTGTATGCACCAGCAA+CGG + chr1_2:5285541-5285560 None:intergenic 40.0%
TACTGACATAAGCACTTGTG+TGG - chr1_2:5285684-5285703 Msa0051190:intron 40.0%
CGTATTTCCATAAGCTCTCT+AGG - chr1_2:5285762-5285781 Msa0051190:intron 40.0%
AAGCTATCCTAGAGAGCTTA+TGG + chr1_2:5285772-5285791 None:intergenic 40.0%
TGGGTATGGAACATAAATCC+TGG + chr1_2:5285968-5285987 None:intergenic 40.0%
ATGTTCCATACCCATTTCAG+TGG - chr1_2:5285974-5285993 Msa0051190:intron 40.0%
TGTTCCATACCCATTTCAGT+GGG - chr1_2:5285975-5285994 Msa0051190:intron 40.0%
!! TAGTCATGTCTTTGGGATGA+TGG - chr1_2:5286017-5286036 Msa0051190:intron 40.0%
!! AGTCATGTCTTTGGGATGAT+GGG - chr1_2:5286018-5286037 Msa0051190:intron 40.0%
!! ATGCTGATTGAAGGCATTTG+TGG - chr1_2:5286616-5286635 Msa0051190:CDS 40.0%
AGTAGGAGTGAACATGGAAA+GGG - chr1_2:5286718-5286737 Msa0051190:CDS 40.0%
GTGAACATGGAAAGGGTTAT+AGG - chr1_2:5286725-5286744 Msa0051190:CDS 40.0%
AACATGGAAAGGGTTATAGG+TGG - chr1_2:5286728-5286747 Msa0051190:CDS 40.0%
ATGGAAATAGCAGTGGAGTA+TGG + chr1_2:5286818-5286837 None:intergenic 40.0%
AATAAAACCCAGGTTGTGCA+TGG + chr1_2:5286837-5286856 None:intergenic 40.0%
!!! TGCACAACCTGGGTTTTATT+TGG - chr1_2:5286837-5286856 Msa0051190:intron 40.0%
AGTGAAAATGTCGGTCTACT+CGG - chr1_2:5286948-5286967 Msa0051190:intron 40.0%
GAGAGGAATTGATGCGAAAA+AGG + chr1_2:5287150-5287169 None:intergenic 40.0%
! TTTTATTCGGCATTGTCGGT+AGG - chr1_2:5287195-5287214 Msa0051190:intron 40.0%
! TTCGGCTTAACCTTGTTTCT+CGG - chr1_2:5287367-5287386 Msa0051190:intron 40.0%
AATTGAGATCCCGAGAAACA+AGG + chr1_2:5287380-5287399 None:intergenic 40.0%
!! AGTTAGAACCAATGGTGGAT+GGG - chr1_2:5287444-5287463 Msa0051190:intron 40.0%
!!! GTACCTTGTCTTGTTTTGTG+TGG - chr1_2:5287654-5287673 Msa0051190:intron 40.0%
TTGCCACACAAAACAAGACA+AGG + chr1_2:5287660-5287679 None:intergenic 40.0%
!! AGTTGGTGGAGATGAGAATA+TGG + chr1_2:5287705-5287724 None:intergenic 40.0%
ACTATTATTGCCACAGTTGG+TGG + chr1_2:5287719-5287738 None:intergenic 40.0%
CCAACTATTATTGCCACAGT+TGG + chr1_2:5287722-5287741 None:intergenic 40.0%
CCAACTGTGGCAATAATAGT+TGG - chr1_2:5287719-5287738 Msa0051190:intron 40.0%
GTTCCTTTCCAGAAAAGGAA+GGG - chr1_2:5287806-5287825 Msa0051190:CDS 40.0%
! TAACATCTCCCTTCCTTTTC+TGG + chr1_2:5287817-5287836 None:intergenic 40.0%
GTTTGGCACCATATCTTACA+AGG + chr1_2:5287957-5287976 None:intergenic 40.0%
AAGAGAAGTAGAGAGAGAGA+GGG + chr1_2:5288206-5288225 None:intergenic 40.0%
AAAGAGAAGTAGAGAGAGAG+AGG + chr1_2:5288207-5288226 None:intergenic 40.0%
AATCTCTTCCTCCCAAGATT+TGG + chr1_2:5288246-5288265 None:intergenic 40.0%
!! GGTGGTGCTATGAAGAAATT+GGG + chr1_2:5288300-5288319 None:intergenic 40.0%
TATGAAGTACGGACACTTCT+CGG - chr1_2:5288888-5288907 Msa0051190:CDS 40.0%
!! GACTTAGCTTTGTAACCTCA+AGG + chr1_2:5289107-5289126 None:intergenic 40.0%
!! GTGAAGAGCGTAACAGATTT+TGG + chr1_2:5289242-5289261 None:intergenic 40.0%
!! CCTTTAAGGGTCACATTTTC+TGG + chr1_2:5289355-5289374 None:intergenic 40.0%
CCAGAAAATGTGACCCTTAA+AGG - chr1_2:5289352-5289371 Msa0051190:intron 40.0%
AACTCCACTAGGACCTTTAA+GGG + chr1_2:5289368-5289387 None:intergenic 40.0%
ATATTCCACACAACTCCACT+AGG + chr1_2:5289379-5289398 None:intergenic 40.0%
CTGTTTACTTCACAAACGGT+TGG - chr1_2:5289422-5289441 Msa0051190:intron 40.0%
CGCCATTGTACTTGAAGAAA+AGG + chr1_2:5289489-5289508 None:intergenic 40.0%
TGGACTTAGTTTCTGTGAGA+AGG - chr1_2:5289537-5289556 Msa0051190:CDS 40.0%
! CTTTTGCCAGTTAATTGGGA+GGG + chr1_2:5289741-5289760 None:intergenic 40.0%
! TAAGAGAGCACATGATTTGG+TGG - chr1_2:5289824-5289843 Msa0051190:intron 40.0%
ACCTGAGTGTTCTTTGTTAC+AGG + chr1_2:5289850-5289869 None:intergenic 40.0%
! TCTGACTTTTAAATGGGACC+CGG + chr1_2:5289970-5289989 None:intergenic 40.0%
! AGTCAGAGCAAAGCTTTGTA+TGG - chr1_2:5289983-5290002 Msa0051190:CDS 40.0%
AAGGGAAAGACTTAGGACTT+TGG + chr1_2:5290070-5290089 None:intergenic 40.0%
TAAAATGGAGAGGAGCTTGT+TGG + chr1_2:5290173-5290192 None:intergenic 40.0%
AGGGAAAGGTTAAAATGGAG+AGG + chr1_2:5290183-5290202 None:intergenic 40.0%
ACGTGAAACATTGATATCGC+CGG + chr1_2:5290462-5290481 None:intergenic 40.0%
ATCTGCTTGACAAACTGATC+TGG - chr1_2:5290581-5290600 Msa0051190:intron 40.0%
TGTGCAGCAGAGAAATGATA+TGG + chr1_2:5290648-5290667 None:intergenic 40.0%
! GTAACTTCTGTTTTGCAGTC+AGG + chr1_2:5290675-5290694 None:intergenic 40.0%
! CAAGTTCATATATCTGGGGT+TGG - chr1_2:5290891-5290910 Msa0051190:five_prime_UTR 40.0%
! TCATATATCTGGGGTTGGAA+AGG - chr1_2:5290896-5290915 Msa0051190:five_prime_UTR 40.0%
AAGGTCTTGACCAGCAAAAT+GGG - chr1_2:5290919-5290938 Msa0051190:five_prime_UTR 40.0%
TTGACCAGCAAAATGGGAAT+GGG - chr1_2:5290925-5290944 Msa0051190:five_prime_UTR 40.0%
CAAGAACGTTAGCAGGTAAA+TGG + chr1_2:5290981-5291000 None:intergenic 40.0%
TCACAAACAAGAACGTTAGC+AGG + chr1_2:5290988-5291007 None:intergenic 40.0%
! CTTGGTGGTTATCTGTGTCA+TGG + chr1_2:5283615-5283634 None:intergenic 45.0%
!! AGTCCAAAATTCTGAGGTGG+TGG + chr1_2:5283670-5283689 None:intergenic 45.0%
!!! TGCAGCTGAAGCATTGCTTT+TGG - chr1_2:5284155-5284174 Msa0051190:intron 45.0%
CAGCACTACATTGTGATGCT+TGG - chr1_2:5284183-5284202 Msa0051190:intron 45.0%
AACCTTGTACCTCAAATGGG+TGG - chr1_2:5284228-5284247 Msa0051190:intron 45.0%
ACCTTGTACCTCAAATGGGT+GGG - chr1_2:5284229-5284248 Msa0051190:intron 45.0%
!! TTGGTTTGGTTCAAGGCTTC+CGG - chr1_2:5284496-5284515 Msa0051190:intron 45.0%
TTCAAGGCTTCCGGTGATTA+TGG - chr1_2:5284505-5284524 Msa0051190:intron 45.0%
TCAAGGCTTCCGGTGATTAT+GGG - chr1_2:5284506-5284525 Msa0051190:intron 45.0%
AGTGATCCACCCATAATCAC+CGG + chr1_2:5284518-5284537 None:intergenic 45.0%
GTCAACTGAATTGCTACGTG+TGG - chr1_2:5284764-5284783 Msa0051190:CDS 45.0%
CCCATGTCCTACTATATCCA+AGG + chr1_2:5284951-5284970 None:intergenic 45.0%
GACAATGGGACTAAACAACC+TGG + chr1_2:5285122-5285141 None:intergenic 45.0%
TCCCATTGTCATTGTACCTG+TGG - chr1_2:5285132-5285151 Msa0051190:intron 45.0%
CATTGTACCTGTGGTATGTG+TGG - chr1_2:5285141-5285160 Msa0051190:intron 45.0%
CTTGCAGATTGTGTGCAGAT+CGG - chr1_2:5285298-5285317 Msa0051190:intron 45.0%
! ACAATCAGCAGAAGGAGCAT+AGG + chr1_2:5285328-5285347 None:intergenic 45.0%
TGCAGGACCGGAAATGTAAA+AGG + chr1_2:5285420-5285439 None:intergenic 45.0%
TGCTTCAAATACTGCAGGAC+CGG + chr1_2:5285432-5285451 None:intergenic 45.0%
!! GAAGGTGCTTCAAATACTGC+AGG + chr1_2:5285437-5285456 None:intergenic 45.0%
TTGCTACATACCATGGTGCA+CGG + chr1_2:5285617-5285636 None:intergenic 45.0%
GTTCCATACCCATTTCAGTG+GGG - chr1_2:5285976-5285995 Msa0051190:intron 45.0%
! AGCACTTGTCACTTCTTTCG+AGG - chr1_2:5286044-5286063 Msa0051190:intron 45.0%
TGTCGGACACTAAGACATGT+TGG - chr1_2:5286219-5286238 Msa0051190:intron 45.0%
! GGCATTAGCATGCTGATTGA+AGG - chr1_2:5286607-5286626 Msa0051190:CDS 45.0%
! GGCATTTGTGGCTCTATTGT+TGG - chr1_2:5286628-5286647 Msa0051190:CDS 45.0%
! GTTCTGAGTAGGAGTGAACA+TGG - chr1_2:5286712-5286731 Msa0051190:CDS 45.0%
GAGTAGGAGTGAACATGGAA+AGG - chr1_2:5286717-5286736 Msa0051190:CDS 45.0%
TGGAAAGGGTTATAGGTGGA+AGG - chr1_2:5286732-5286751 Msa0051190:CDS 45.0%
GTTGTGCATGGAAATAGCAG+TGG + chr1_2:5286825-5286844 None:intergenic 45.0%
!! TGCTATTTCCATGCACAACC+TGG - chr1_2:5286826-5286845 Msa0051190:intron 45.0%
! GCTATTTCCATGCACAACCT+GGG - chr1_2:5286827-5286846 Msa0051190:intron 45.0%
TACTCGGTCTCACACACATA+GGG - chr1_2:5286964-5286983 Msa0051190:intron 45.0%
AGAGTGGTGCAAATGTCATG+TGG - chr1_2:5286993-5287012 Msa0051190:CDS 45.0%
ATAGCAGCGAATATTGGGAG+AGG + chr1_2:5287167-5287186 None:intergenic 45.0%
! TCGGCTTAACCTTGTTTCTC+GGG - chr1_2:5287368-5287387 Msa0051190:intron 45.0%
CATGGTCCAGTTAGAACCAA+TGG - chr1_2:5287436-5287455 Msa0051190:intron 45.0%
!! CATCCACCATTGGTTCTAAC+TGG + chr1_2:5287445-5287464 None:intergenic 45.0%
! CAGTTAGAACCAATGGTGGA+TGG - chr1_2:5287443-5287462 Msa0051190:intron 45.0%
GGACTTGTAAAAAGGGACTG+AGG + chr1_2:5287521-5287540 None:intergenic 45.0%
ATTCTCATCTCCACCAACTG+TGG - chr1_2:5287706-5287725 Msa0051190:intron 45.0%
TGAAGCCAAACAAACAGCTG+TGG - chr1_2:5287763-5287782 Msa0051190:intron 45.0%
TCTGTCCACAGCTGTTTGTT+TGG + chr1_2:5287771-5287790 None:intergenic 45.0%
AAACAAACAGCTGTGGACAG+AGG - chr1_2:5287770-5287789 Msa0051190:intron 45.0%
GGTTCCTTTCCAGAAAAGGA+AGG - chr1_2:5287805-5287824 Msa0051190:CDS 45.0%
!! TCTCCCTTCCTTTTCTGGAA+AGG + chr1_2:5287812-5287831 None:intergenic 45.0%
TCTTCCTCGTGAACTGTTGA+AGG - chr1_2:5288141-5288160 Msa0051190:intron 45.0%
CTTCCTCGTGAACTGTTGAA+GGG - chr1_2:5288142-5288161 Msa0051190:intron 45.0%
AAACCCTTCAACAGTTCACG+AGG + chr1_2:5288148-5288167 None:intergenic 45.0%
AGTAGAGAGAGAGAGGGAAA+GGG + chr1_2:5288200-5288219 None:intergenic 45.0%
AAGTAGAGAGAGAGAGGGAA+AGG + chr1_2:5288201-5288220 None:intergenic 45.0%
!! TGGTAGGAAGCACCAAATCT+TGG - chr1_2:5288231-5288250 Msa0051190:intron 45.0%
!! GGTAGGAAGCACCAAATCTT+GGG - chr1_2:5288232-5288251 Msa0051190:intron 45.0%
!! CGGTGGTGCTATGAAGAAAT+TGG + chr1_2:5288301-5288320 None:intergenic 45.0%
GTTCTGTTTGGGAGTTTGCA+AGG - chr1_2:5288728-5288747 Msa0051190:intron 45.0%
TGTTTGGGAGTTTGCAAGGA+GGG - chr1_2:5288732-5288751 Msa0051190:intron 45.0%
!! GAGAAGTGTCCGTACTTCAT+AGG + chr1_2:5288889-5288908 None:intergenic 45.0%
TGACTATGAAGCACGGACAT+CGG + chr1_2:5289044-5289063 None:intergenic 45.0%
CAACTCCACTAGGACCTTTA+AGG + chr1_2:5289369-5289388 None:intergenic 45.0%
! CACAGACTTGTTTGTGTCCT+TGG + chr1_2:5289622-5289641 None:intergenic 45.0%
CAAGGACACAAACAAGTCTG+TGG - chr1_2:5289620-5289639 Msa0051190:intron 45.0%
! CCTTTTGCCAGTTAATTGGG+AGG + chr1_2:5289742-5289761 None:intergenic 45.0%
CCTCCCAATTAACTGGCAAA+AGG - chr1_2:5289739-5289758 Msa0051190:intron 45.0%
!!! TAGCTGCTTTTGGTAATCCG+AGG + chr1_2:5289797-5289816 None:intergenic 45.0%
GCCTGTAACAAAGAACACTC+AGG - chr1_2:5289846-5289865 Msa0051190:intron 45.0%
! CTGACTTTTAAATGGGACCC+GGG + chr1_2:5289969-5289988 None:intergenic 45.0%
ATCAAAACGGAGACCTTGAG+AGG - chr1_2:5290036-5290055 Msa0051190:intron 45.0%
! TGGCAGGTTAGTTAGAGAGA+AGG + chr1_2:5290153-5290172 None:intergenic 45.0%
CATCCATCGTGCATAGATGT+GGG - chr1_2:5290366-5290385 Msa0051190:intron 45.0%
GCTTGACAAACTGATCTGGT+TGG - chr1_2:5290585-5290604 Msa0051190:intron 45.0%
GTTACGCTTCGCAATTCAAG+AGG - chr1_2:5290690-5290709 Msa0051190:CDS 45.0%
GCAATTCAAGAGGCGAATGT+TGG - chr1_2:5290700-5290719 Msa0051190:CDS 45.0%
TCTCCGTTTAGCATATGGGT+TGG + chr1_2:5290769-5290788 None:intergenic 45.0%
CTGGTCTCCGTTTAGCATAT+GGG + chr1_2:5290773-5290792 None:intergenic 45.0%
! ACTGGTCTCCGTTTAGCATA+TGG + chr1_2:5290774-5290793 None:intergenic 45.0%
! AGACCAGTTCACACCTTTTG+TGG - chr1_2:5290786-5290805 Msa0051190:CDS 45.0%
! GACCAGTTCACACCTTTTGT+GGG - chr1_2:5290787-5290806 Msa0051190:CDS 45.0%
! ACCAGTTCACACCTTTTGTG+GGG - chr1_2:5290788-5290807 Msa0051190:CDS 45.0%
! ATATCTGGGGTTGGAAAGGA+AGG - chr1_2:5290900-5290919 Msa0051190:five_prime_UTR 45.0%
GAAGGTCTTGACCAGCAAAA+TGG - chr1_2:5290918-5290937 Msa0051190:five_prime_UTR 45.0%
CTTGACCAGCAAAATGGGAA+TGG - chr1_2:5290924-5290943 Msa0051190:five_prime_UTR 45.0%
! GTTTCCCATTCCCATTTTGC+TGG + chr1_2:5290932-5290951 None:intergenic 45.0%
!!! TTAAATATTTTAACAAAATA+TGG + chr1_2:5290437-5290456 None:intergenic 5.0%
!! AAATTCTGAGGTGGTGGTCC+CGG + chr1_2:5283664-5283683 None:intergenic 50.0%
! GGACCACCACCTCAGAATTT+TGG - chr1_2:5283664-5283683 Msa0051190:CDS 50.0%
! TCCCACCCATTTGAGGTACA+AGG + chr1_2:5284233-5284252 None:intergenic 50.0%
ACATGACTCCCACCCATTTG+AGG + chr1_2:5284240-5284259 None:intergenic 50.0%
GTACCTGTGGTATGTGTGGT+TGG - chr1_2:5285145-5285164 Msa0051190:intron 50.0%
AGTCCAACCACACATACCAC+AGG + chr1_2:5285151-5285170 None:intergenic 50.0%
GTGGTATGTGTGGTTGGACT+CGG - chr1_2:5285151-5285170 Msa0051190:intron 50.0%
CACACAATCTGCAAGCTGCA+TGG + chr1_2:5285293-5285312 None:intergenic 50.0%
AGCGGCGAAAGCCCAAATAA+CGG + chr1_2:5285511-5285530 None:intergenic 50.0%
ACCAGCAACGGTAAGGATAG+CGG + chr1_2:5285529-5285548 None:intergenic 50.0%
TGTATGCACCAGCAACGGTA+AGG + chr1_2:5285536-5285555 None:intergenic 50.0%
TGCTACATACCATGGTGCAC+GGG + chr1_2:5285616-5285635 None:intergenic 50.0%
GTACCCCACTGAAATGGGTA+TGG + chr1_2:5285982-5286001 None:intergenic 50.0%
! GTAGCTACATGTGTCGGTGT+CGG - chr1_2:5286202-5286221 Msa0051190:intron 50.0%
CTACTCGGTCTCACACACAT+AGG - chr1_2:5286963-5286982 Msa0051190:intron 50.0%
ACACATAGGGAGCAGAAGAG+TGG - chr1_2:5286977-5286996 Msa0051190:intron 50.0%
TATCTCCTGCAGCTGCTACT+GGG - chr1_2:5287293-5287312 Msa0051190:CDS 50.0%
GTCATGAACACTGCACCTGA+TGG - chr1_2:5287412-5287431 Msa0051190:intron 50.0%
AACACTGCACCTGATGGTCA+TGG - chr1_2:5287418-5287437 Msa0051190:intron 50.0%
CTAACTGGACCATGACCATC+AGG + chr1_2:5287430-5287449 None:intergenic 50.0%
GGTCCAGTTAGAACCAATGG+TGG - chr1_2:5287439-5287458 Msa0051190:intron 50.0%
GTGACTTACCCATCCACCAT+TGG + chr1_2:5287455-5287474 None:intergenic 50.0%
! TTCTGGAAAGGAACCCACCA+TGG + chr1_2:5287800-5287819 None:intergenic 50.0%
! GGTGGGTTCCTTTCCAGAAA+AGG - chr1_2:5287801-5287820 Msa0051190:intron 50.0%
GAGAGAGGGAAAGGGTTCAA+AGG + chr1_2:5288192-5288211 None:intergenic 50.0%
!! AGGAAGCACCAAATCTTGGG+AGG - chr1_2:5288235-5288254 Msa0051190:intron 50.0%
CTGTTTGGGAGTTTGCAAGG+AGG - chr1_2:5288731-5288750 Msa0051190:intron 50.0%
GTTTGGGAGTTTGCAAGGAG+GGG - chr1_2:5288733-5288752 Msa0051190:intron 50.0%
GAGTTTGCAAGGAGGGGATA+AGG - chr1_2:5288739-5288758 Msa0051190:intron 50.0%
CAGATAGTGTTTGCGGAACC+AGG + chr1_2:5288808-5288827 None:intergenic 50.0%
GTGACCCTTAAAGGTCCTAG+TGG - chr1_2:5289361-5289380 Msa0051190:intron 50.0%
AAGGTCCTAGTGGAGTTGTG+TGG - chr1_2:5289371-5289390 Msa0051190:intron 50.0%
TGGTCATGCTCAAACCGAAC+AGG - chr1_2:5289585-5289604 Msa0051190:intron 50.0%
GGTCATGCTCAAACCGAACA+GGG - chr1_2:5289586-5289605 Msa0051190:intron 50.0%
GTCATGCTCAAACCGAACAG+GGG - chr1_2:5289587-5289606 Msa0051190:intron 50.0%
TCATGCTCAAACCGAACAGG+GGG - chr1_2:5289588-5289607 Msa0051190:intron 50.0%
!! AAACCGAACAGGGGGTATCA+AGG - chr1_2:5289596-5289615 Msa0051190:intron 50.0%
!! TACTGCTTTTGATGCGGGTG+TGG - chr1_2:5289653-5289672 Msa0051190:intron 50.0%
ATCAGCCATGCACTTCTCAG+GGG + chr1_2:5289688-5289707 None:intergenic 50.0%
CATCAGCCATGCACTTCTCA+GGG + chr1_2:5289689-5289708 None:intergenic 50.0%
AATACTCTGTCTCCAGCCCA+AGG - chr1_2:5289908-5289927 Msa0051190:CDS 50.0%
!! CCTCGGATTAGTCAGTCCTT+GGG + chr1_2:5289927-5289946 None:intergenic 50.0%
CCAAGGACTGACTAATCCGA+GGG - chr1_2:5289925-5289944 Msa0051190:CDS 50.0%
CAAGGACTGACTAATCCGAG+GGG - chr1_2:5289926-5289945 Msa0051190:CDS 50.0%
! ACTTTTAAATGGGACCCGGG+TGG + chr1_2:5289966-5289985 None:intergenic 50.0%
!! ATGGACTAGCCCACCAAAGT+TGG - chr1_2:5290002-5290021 Msa0051190:CDS 50.0%
!!! GTCTCCGTTTTGATTCCCCT+CGG + chr1_2:5290030-5290049 None:intergenic 50.0%
! TTTGGAGTGTGCTCCTCTCA+AGG + chr1_2:5290052-5290071 None:intergenic 50.0%
GAGACCCAGAATGAAGGGAA+AGG + chr1_2:5290197-5290216 None:intergenic 50.0%
GCATCCATCGTGCATAGATG+TGG - chr1_2:5290365-5290384 Msa0051190:intron 50.0%
CTTCCCACATCTATGCACGA+TGG + chr1_2:5290372-5290391 None:intergenic 50.0%
CATCGTGCATAGATGTGGGA+AGG - chr1_2:5290370-5290389 Msa0051190:intron 50.0%
! CCAGTTCACACCTTTTGTGG+GGG - chr1_2:5290789-5290808 Msa0051190:CDS 50.0%
! TTCACACCTTTTGTGGGGGT+TGG - chr1_2:5290793-5290812 Msa0051190:CDS 50.0%
! TCACACCTTTTGTGGGGGTT+GGG - chr1_2:5290794-5290813 Msa0051190:CDS 50.0%
GACTTTCAAGGGGTCCCACT+TGG - chr1_2:5283686-5283705 Msa0051190:CDS 55.0%
TGTTCCGCTGGAGTCCAAGT+GGG + chr1_2:5283703-5283722 None:intergenic 55.0%
AGCTGAAGAAGCTGTTCCGC+TGG + chr1_2:5283715-5283734 None:intergenic 55.0%
AGGCTTCCGGTGATTATGGG+TGG - chr1_2:5284509-5284528 Msa0051190:intron 55.0%
GTGGCTGTTTGAGAGAGCTC+AGG - chr1_2:5285703-5285722 Msa0051190:intron 55.0%
!! TGGGGGTACCCCACTGAAAT+GGG + chr1_2:5285987-5286006 None:intergenic 55.0%
!! ATGGGGGTACCCCACTGAAA+TGG + chr1_2:5285988-5286007 None:intergenic 55.0%
CATGTGCTCAGCCGAAGCAT+CGG - chr1_2:5286485-5286504 Msa0051190:intron 55.0%
! ATGTGCTCAGCCGAAGCATC+GGG - chr1_2:5286486-5286505 Msa0051190:intron 55.0%
TCACCTGAAGCCCGATGCTT+CGG + chr1_2:5286499-5286518 None:intergenic 55.0%
CTATCTCCTGCAGCTGCTAC+TGG - chr1_2:5287292-5287311 Msa0051190:CDS 55.0%
CTGTGGACAGAGGACTTCCA+TGG - chr1_2:5287780-5287799 Msa0051190:intron 55.0%
TGGACAGAGGACTTCCATGG+TGG - chr1_2:5287783-5287802 Msa0051190:intron 55.0%
GGACAGAGGACTTCCATGGT+GGG - chr1_2:5287784-5287803 Msa0051190:intron 55.0%
!! GTGTCGGTGTCTTTTGGCGT+CGG + chr1_2:5288949-5288968 None:intergenic 55.0%
! CACTTGAGGTGCTAGCTCAG+TGG + chr1_2:5289134-5289153 None:intergenic 55.0%
! TGGCCTTGATACCCCCTGTT+CGG + chr1_2:5289602-5289621 None:intergenic 55.0%
!! AACAGGGGGTATCAAGGCCA+AGG - chr1_2:5289602-5289621 Msa0051190:intron 55.0%
! TGCTTCCCCTGAGAAGTGCA+TGG - chr1_2:5289680-5289699 Msa0051190:intron 55.0%
GCATCAGCCATGCACTTCTC+AGG + chr1_2:5289690-5289709 None:intergenic 55.0%
ATTGGGAGGGAGCTGCAACA+GGG + chr1_2:5289728-5289747 None:intergenic 55.0%
AATTGGGAGGGAGCTGCAAC+AGG + chr1_2:5289729-5289748 None:intergenic 55.0%
GCAGCTCCCTCCCAATTAAC+TGG - chr1_2:5289732-5289751 Msa0051190:intron 55.0%
!! GGATTAGTCAGTCCTTGGGC+TGG + chr1_2:5289923-5289942 None:intergenic 55.0%
CCCAAGGACTGACTAATCCG+AGG - chr1_2:5289924-5289943 Msa0051190:CDS 55.0%
!! CCCTCGGATTAGTCAGTCCT+TGG + chr1_2:5289928-5289947 None:intergenic 55.0%
!! ATTCCCCTCGGTGCCAACTT+TGG + chr1_2:5290018-5290037 None:intergenic 55.0%
! GGCACCGAGGGGAATCAAAA+CGG - chr1_2:5290023-5290042 Msa0051190:intron 55.0%
!! ATGGAGAGGAGCTTGTTGGC+AGG + chr1_2:5290169-5290188 None:intergenic 55.0%
! CCCCCACAAAAGGTGTGAAC+TGG + chr1_2:5290792-5290811 None:intergenic 55.0%
GAACTGACGGTGGTGCTTGG+TGG + chr1_2:5283630-5283649 None:intergenic 60.0%
CCTGAACTGACGGTGGTGCT+TGG + chr1_2:5283633-5283652 None:intergenic 60.0%
CCAAGCACCACCGTCAGTTC+AGG - chr1_2:5283630-5283649 Msa0051190:CDS 60.0%
CTGTTCCGCTGGAGTCCAAG+TGG + chr1_2:5283704-5283723 None:intergenic 60.0%
! TTGGACTCGGTCTGTTCGCG+AGG - chr1_2:5285164-5285183 Msa0051190:intron 60.0%
! TGGACTCGGTCTGTTCGCGA+GGG - chr1_2:5285165-5285184 Msa0051190:intron 60.0%
GTTCGCGAGGGGCTTTCCAA+TGG - chr1_2:5285177-5285196 Msa0051190:intron 60.0%
GCCGCTATCCTTACCGTTGC+TGG - chr1_2:5285525-5285544 Msa0051190:intron 60.0%
ACCTTCTGACCCGTGCACCA+TGG - chr1_2:5285604-5285623 Msa0051190:intron 60.0%
ACCATGGTGCACGGGTCAGA+AGG + chr1_2:5285608-5285627 None:intergenic 60.0%
! GGCTGCGGCGAAGAAAGTAC+CGG + chr1_2:5286435-5286454 None:intergenic 60.0%
GTACTTTCTTCGCCGCAGCC+AGG - chr1_2:5286435-5286454 Msa0051190:intron 60.0%
TGCACCAGAAAGCCTGGCTG+CGG + chr1_2:5286450-5286469 None:intergenic 60.0%
! GGGTGTTGCACCAGAAAGCC+TGG + chr1_2:5286456-5286475 None:intergenic 60.0%
TTCTGGTGCAACACCCCCTC+CGG - chr1_2:5286460-5286479 Msa0051190:intron 60.0%
CTTCGGCTGAGCACATGTGC+CGG + chr1_2:5286482-5286501 None:intergenic 60.0%
GAGATCCCAGTAGCAGCTGC+AGG + chr1_2:5287301-5287320 None:intergenic 60.0%
! GAGGTGCTAGCTCAGTGGCA+AGG + chr1_2:5289129-5289148 None:intergenic 60.0%
TTGGGAGGGAGCTGCAACAG+GGG + chr1_2:5289727-5289746 None:intergenic 60.0%
!! CCCTCGGTGCCAACTTTGGT+GGG + chr1_2:5290014-5290033 None:intergenic 60.0%
! CCCACCAAAGTTGGCACCGA+GGG - chr1_2:5290011-5290030 Msa0051190:intron 60.0%
! CCACCAAAGTTGGCACCGAG+GGG - chr1_2:5290012-5290031 Msa0051190:intron 60.0%
! CACCTTTTGTGGGGGTTGGG+TGG - chr1_2:5290797-5290816 Msa0051190:CDS 60.0%
! GGTGGCGGTGCCTGAACTGA+CGG + chr1_2:5283643-5283662 None:intergenic 65.0%
! GTCAGTTCAGGCACCGCCAC+CGG - chr1_2:5283642-5283661 Msa0051190:CDS 65.0%
! TCAGTTCAGGCACCGCCACC+GGG - chr1_2:5283643-5283662 Msa0051190:CDS 65.0%
!! TTCTGAGGTGGTGGTCCCGG+TGG + chr1_2:5283661-5283680 None:intergenic 65.0%
GGGTCCCACTTGGACTCCAG+CGG - chr1_2:5283696-5283715 Msa0051190:CDS 65.0%
! GGACTCGGTCTGTTCGCGAG+GGG - chr1_2:5285166-5285185 Msa0051190:intron 65.0%
TTCGCCGCAGCCAGGCTTTC+TGG - chr1_2:5286443-5286462 Msa0051190:intron 65.0%
CTGAGCACATGTGCCGGAGG+GGG + chr1_2:5286476-5286495 None:intergenic 65.0%
GCTGAGCACATGTGCCGGAG+GGG + chr1_2:5286477-5286496 None:intergenic 65.0%
GGCTGAGCACATGTGCCGGA+GGG + chr1_2:5286478-5286497 None:intergenic 65.0%
!! CAGCCGAAGCATCGGGCTTC+AGG - chr1_2:5286493-5286512 Msa0051190:intron 65.0%
GACTGCGGGATTGGACCCCT+CGG + chr1_2:5289944-5289963 None:intergenic 65.0%
GTCCAATCCCGCAGTCCACC+CGG - chr1_2:5289948-5289967 Msa0051190:CDS 65.0%
TCCAATCCCGCAGTCCACCC+GGG - chr1_2:5289949-5289968 Msa0051190:CDS 65.0%
!! AATGGGACCCGGGTGGACTG+CGG + chr1_2:5289959-5289978 None:intergenic 65.0%
GCCCACCAAAGTTGGCACCG+AGG - chr1_2:5290010-5290029 Msa0051190:intron 65.0%
!! CCCCTCGGTGCCAACTTTGG+TGG + chr1_2:5290015-5290034 None:intergenic 65.0%
GGCCACCCAACCCCCACAAA+AGG + chr1_2:5290802-5290821 None:intergenic 65.0%
GGCGGTGCCTGAACTGACGG+TGG + chr1_2:5283640-5283659 None:intergenic 70.0%
! TGAGGTGGTGGTCCCGGTGG+CGG + chr1_2:5283658-5283677 None:intergenic 70.0%
CGGCTGAGCACATGTGCCGG+AGG + chr1_2:5286479-5286498 None:intergenic 70.0%
GGAGGGAGCTGCAACAGGGG+TGG + chr1_2:5289724-5289743 None:intergenic 70.0%
!! ACCCGGGTGGACTGCGGGAT+TGG + chr1_2:5289953-5289972 None:intergenic 70.0%
!! ATGGGACCCGGGTGGACTGC+GGG + chr1_2:5289958-5289977 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 5283270 5291184 5283270 ID=Msa0051190;Name=Msa0051190
chr1_2 mRNA 5283270 5291184 5283270 ID=Msa0051190-mRNA-1;Parent=Msa0051190;Name=Msa0051190-mRNA-1;_AED=0.28;_eAED=0.28;_QI=337|0.82|0.72|1|1|1|18|219|872
chr1_2 exon 5283270 5283815 5283270 ID=Msa0051190-mRNA-1:exon:1592;Parent=Msa0051190-mRNA-1
chr1_2 exon 5283967 5284091 5283967 ID=Msa0051190-mRNA-1:exon:1591;Parent=Msa0051190-mRNA-1
chr1_2 exon 5284587 5284847 5284587 ID=Msa0051190-mRNA-1:exon:1590;Parent=Msa0051190-mRNA-1
chr1_2 exon 5284868 5285144 5284868 ID=Msa0051190-mRNA-1:exon:1589;Parent=Msa0051190-mRNA-1
chr1_2 exon 5286117 5286217 5286117 ID=Msa0051190-mRNA-1:exon:1588;Parent=Msa0051190-mRNA-1
chr1_2 exon 5286567 5286771 5286567 ID=Msa0051190-mRNA-1:exon:1587;Parent=Msa0051190-mRNA-1
chr1_2 exon 5286989 5287149 5286989 ID=Msa0051190-mRNA-1:exon:1586;Parent=Msa0051190-mRNA-1
chr1_2 exon 5287242 5287319 5287242 ID=Msa0051190-mRNA-1:exon:1585;Parent=Msa0051190-mRNA-1
chr1_2 exon 5287805 5287847 5287805 ID=Msa0051190-mRNA-1:exon:1584;Parent=Msa0051190-mRNA-1
chr1_2 exon 5287940 5288026 5287940 ID=Msa0051190-mRNA-1:exon:1583;Parent=Msa0051190-mRNA-1
chr1_2 exon 5288389 5288485 5288389 ID=Msa0051190-mRNA-1:exon:1582;Parent=Msa0051190-mRNA-1
chr1_2 exon 5288829 5289013 5288829 ID=Msa0051190-mRNA-1:exon:1581;Parent=Msa0051190-mRNA-1
chr1_2 exon 5289097 5289156 5289097 ID=Msa0051190-mRNA-1:exon:1580;Parent=Msa0051190-mRNA-1
chr1_2 exon 5289256 5289331 5289256 ID=Msa0051190-mRNA-1:exon:1579;Parent=Msa0051190-mRNA-1
chr1_2 exon 5289471 5289571 5289471 ID=Msa0051190-mRNA-1:exon:1578;Parent=Msa0051190-mRNA-1
chr1_2 exon 5289847 5290023 5289847 ID=Msa0051190-mRNA-1:exon:1577;Parent=Msa0051190-mRNA-1
chr1_2 exon 5290197 5290294 5290197 ID=Msa0051190-mRNA-1:exon:1576;Parent=Msa0051190-mRNA-1
chr1_2 exon 5290688 5291184 5290688 ID=Msa0051190-mRNA-1:exon:1575;Parent=Msa0051190-mRNA-1
chr1_2 five_prime_UTR 5290848 5291184 5290848 ID=Msa0051190-mRNA-1:five_prime_utr;Parent=Msa0051190-mRNA-1
chr1_2 CDS 5290688 5290847 5290688 ID=Msa0051190-mRNA-1:cds;Parent=Msa0051190-mRNA-1
chr1_2 CDS 5290197 5290294 5290197 ID=Msa0051190-mRNA-1:cds;Parent=Msa0051190-mRNA-1
chr1_2 CDS 5289847 5290023 5289847 ID=Msa0051190-mRNA-1:cds;Parent=Msa0051190-mRNA-1
chr1_2 CDS 5289471 5289571 5289471 ID=Msa0051190-mRNA-1:cds;Parent=Msa0051190-mRNA-1
chr1_2 CDS 5289256 5289331 5289256 ID=Msa0051190-mRNA-1:cds;Parent=Msa0051190-mRNA-1
chr1_2 CDS 5289097 5289156 5289097 ID=Msa0051190-mRNA-1:cds;Parent=Msa0051190-mRNA-1
chr1_2 CDS 5288829 5289013 5288829 ID=Msa0051190-mRNA-1:cds;Parent=Msa0051190-mRNA-1
chr1_2 CDS 5288389 5288485 5288389 ID=Msa0051190-mRNA-1:cds;Parent=Msa0051190-mRNA-1
chr1_2 CDS 5287940 5288026 5287940 ID=Msa0051190-mRNA-1:cds;Parent=Msa0051190-mRNA-1
chr1_2 CDS 5287805 5287847 5287805 ID=Msa0051190-mRNA-1:cds;Parent=Msa0051190-mRNA-1
chr1_2 CDS 5287242 5287319 5287242 ID=Msa0051190-mRNA-1:cds;Parent=Msa0051190-mRNA-1
chr1_2 CDS 5286989 5287149 5286989 ID=Msa0051190-mRNA-1:cds;Parent=Msa0051190-mRNA-1
chr1_2 CDS 5286567 5286771 5286567 ID=Msa0051190-mRNA-1:cds;Parent=Msa0051190-mRNA-1
chr1_2 CDS 5286117 5286217 5286117 ID=Msa0051190-mRNA-1:cds;Parent=Msa0051190-mRNA-1
chr1_2 CDS 5284868 5285144 5284868 ID=Msa0051190-mRNA-1:cds;Parent=Msa0051190-mRNA-1
chr1_2 CDS 5284587 5284847 5284587 ID=Msa0051190-mRNA-1:cds;Parent=Msa0051190-mRNA-1
chr1_2 CDS 5283967 5284091 5283967 ID=Msa0051190-mRNA-1:cds;Parent=Msa0051190-mRNA-1
chr1_2 CDS 5283489 5283815 5283489 ID=Msa0051190-mRNA-1:cds;Parent=Msa0051190-mRNA-1
chr1_2 three_prime_UTR 5283270 5283488 5283270 ID=Msa0051190-mRNA-1:three_prime_utr;Parent=Msa0051190-mRNA-1
Gene Sequence

>Msa0051190

ATGGGCCATGACACAGATAACCACCAAGCACCACCGTCAGTTCAGGCACCGCCACCGGGACCACCACCTCAGAATTTTGGACTTTCAAGGGGTCCCACTTGGACTCCAGCGGAACAGCTTCTTCAGCTTCATTATTGCATCCATTCAAATCCTTCATGGCCTGAAGCATTGCTTTTGGCTTTTCAGCACTACATTGTGATGCTTGGAACAACTGTTCTGATTGCAAGCAACCTTGTACCTCAAATGGGTGGGAGTCATCACGATAAGGCTTGTGTGATCCAGACATTGTTGTTTATGTCTGGTATCAACACATTGCTTCAGACTTGGTTTGGTTCAAGGCTTCCGGTGATTATGGGTGGATCACTTGCTTTCTATCTACCGGTGATGTCGATCATAAATGATTACAATGACCAAACTTTCGCATCTGAGAATCAGAGGTTTCGCTACACAATTAGAACAATTCAAGGATCTCTCATTGTTTCTTCTTTTGTCAATATCTTCCTTGGATATAGTAGGACATGGGGAAATTTAACAAAGTTGTTTAGTCCCATTGTCATTGTACCTGTGGTATGTGTGGTTGGACTCGGTCTGTTCGCGAGGGGCTTTCCAATGCTTGCAGATTGTGTGCAGATCGGACTACCTATGCTCCTTCTGCTGATTGTAACACAACAGTATTTGAAGCACCTTCATGCTAAGGCTCATCATATACTTGAGAGGTTTGCTTTACTTATCTGCATTGCCGTTATTTGGGCTTTCGCCGCTATCCTTACCGTTGCTGGTGCATACAATACTTCCAAAGAAAAGACTCAAATAAGTTGTCGCACAGATCGTTCGTACCTTCTGACCCGTGCACCATGGATTTATGTTCCATACCCATTTCAGTGGGGTACCCCCATATTCAAAGCTAGTCATGTCTTTGGGATGATGGGAGCAGCACTTGTCACTTCTTTCGAGTCAACCGGTACTTTCTTCGCCGCAGCCAGGCTTTCTGGTGCAACACCCCCTCCGGCACATGTGCTCAGCCGAAGCATCGGGCTTCAGGGCATTAGCATGCTGATTGAAGGCATTTGTGGCTCTATTGTTGGTAAATTTGGAGCCTTTTTCGCATCAATTCCTCTCCCAATATTCGCTGCTATATACTGTGTTTTATTCGGCATTGTCGCTGCTACTGGGATCTCATTTATACAGTTTGCAAATAACAATTCCATAAGGAATATCTATGTTTTCGGCTTAACCTTGTTTCTCGGGATCTCAATTCCACAATATTTTGTCATGAACACTGCACCTGATGGTCATGGTCCAGTTAGAACCAATGGTGGATGGTTTAATGACATATTGAACACCATATTCTCATCTCCACCAACTGTGGCAATAATAGTTGGGACAGTTCTTGACAACACACTTGAAGCCAAACAAACAGCTGTGGACAGAGGACTTCCATGGTGGGTTCCTTTCCAGAAAAGGAAGGGAGATGTTAGAAATGATGAATTTTATCGCTTTCCTCTCCGTTTGTCTGAATATATTCCTAGAAGCACCAAATCTTGGGAGGAAGAGATTTACTGGAACCATTTTCAGTTCATCCATTTCACCCAATTTCTTCATAGCACCACCGATTTTCAACAACAACTTGCACTTCCTAAAACATTTTCAGACAATTTAAAGAAGAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGAATATAGAGCTGACAACTGAAGATGACACTGTTTACTTCACAAACGGTTGGCAACGATTTGTGAATGATCACTCTTTGAAAGAGAGTGATTTCCTTTTCTTCAAGTACAATGGCGAATCGTTGTTTGAAGTTTTAATCTTTGATGGACTTAGTTTCTGTGAGAAGGCAGCTTCTTATTTTGTTGGAAAATGTGGGGGTATCAAGGCCAAGGACACAAACAAGTCTGTGGAAGAAATCAATACTGCTTTTGATGCGGGTGTGGAGTCTGCTTCCCCTGAGAAGTGCATGGCTGATGCAGTCACTAAGACCACCCCTGTTGCAGCTCCCTCCCAATTAACTGGCAAAAGGATCAAGAAGCCTGTTAATAAATTTACGCTTGTCCTCGGATTACCAAAAGCAGCTACTTCTCATAAGAGAGCACATGATTTGGTGGCCTGTAACAAAGAACACTCAGAGGCATCCATCGTGCATAGATGTGGGAAGGAAGATGTGAAAAAGATAGCCCAATCATTTACCTCCTCTTTTCCATATTTTGTTAAAATATTTAAAACCGGCGATATCAATGTTTCACGTACTATGAAAATTCCATATCATTTCTCTGCTGCACATCTCCCTGACTGCAAAACAGAAGTTACGCTTCGCAATTCAAGAGGCGAATGTTGGACTGTGAACTCTATCCCATATGCTAAAGGGAGAACAATTCAAACCAACCCATATGCTAAACGGAGACCAGTTCACACCTTTTGTGGGGGTTGGGTGGCCTTTGTTCGTGATAATAACATTAAATTTGGTGACACATGCATTTTTGAGCTCGTTTCTGATTATGTGATGCAAGTTCATATATCTGGGGTTGGAAAGGAAGGTCTTGACCAGCAAAATGGGAATGGGAAACTTAATAGCATGTAG
Protein sequence

>Msa0051190

MGHDTDNHQAPPSVQAPPPGPPPQNFGLSRGPTWTPAEQLLQLHYCIHSNPSWPEALLLAFQHYIVMLGTTVLIASNLVPQMGGSHHDKACVIQTLLFMSGINTLLQTWFGSRLPVIMGGSLAFYLPVMSIINDYNDQTFASENQRFRYTIRTIQGSLIVSSFVNIFLGYSRTWGNLTKLFSPIVIVPVVCVVGLGLFARGFPMLADCVQIGLPMLLLLIVTQQYLKHLHAKAHHILERFALLICIAVIWAFAAILTVAGAYNTSKEKTQISCRTDRSYLLTRAPWIYVPYPFQWGTPIFKASHVFGMMGAALVTSFESTGTFFAAARLSGATPPPAHVLSRSIGLQGISMLIEGICGSIVGKFGAFFASIPLPIFAAIYCVLFGIVAATGISFIQFANNNSIRNIYVFGLTLFLGISIPQYFVMNTAPDGHGPVRTNGGWFNDILNTIFSSPPTVAIIVGTVLDNTLEAKQTAVDRGLPWWVPFQKRKGDVRNDEFYRFPLRLSEYIPRSTKSWEEEIYWNHFQFIHFTQFLHSTTDFQQQLALPKTFSDNLKKKLPENVTLKGPSGVVWNIELTTEDDTVYFTNGWQRFVNDHSLKESDFLFFKYNGESLFEVLIFDGLSFCEKAASYFVGKCGGIKAKDTNKSVEEINTAFDAGVESASPEKCMADAVTKTTPVAAPSQLTGKRIKKPVNKFTLVLGLPKAATSHKRAHDLVACNKEHSEASIVHRCGKEDVKKIAQSFTSSFPYFVKIFKTGDINVSRTMKIPYHFSAAHLPDCKTEVTLRNSRGECWTVNSIPYAKGRTIQTNPYAKRRPVHTFCGGWVAFVRDNNIKFGDTCIFELVSDYVMQVHISGVGKEGLDQQNGNGKLNSM*