Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051530 | XP_013466020.3 | 92.661 | 109 | 7 | 1 | 9 | 117 | 35 | 142 | 4.04e-61 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051530 | sp|A0A0C3VJP4|SCP1_MEDTR | 54.808 | 104 | 47 | 0 | 14 | 117 | 27 | 130 | 1.40e-29 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051530 | A0A072VDG1 | 92.661 | 109 | 7 | 1 | 9 | 117 | 35 | 142 | 1.93e-61 | 204 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051530 | Msa0315290 | 0.805754 | 1.145665e-49 | -8.615850e-47 |
| Msa0051530 | Msa0344910 | 0.800822 | 1.203438e-48 | -8.615850e-47 |
| Msa0051530 | Msa0344980 | 0.803791 | 2.945642e-49 | -8.615850e-47 |
| Msa0051530 | Msa1377000 | 0.921501 | 3.300676e-88 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051530 | MtrunA17_Chr1g0153881 | 92.661 | 109 | 7 | 1 | 9 | 117 | 35 | 142 | 3.71e-65 | 204 |
| Msa0051530 | MtrunA17_Chr1g0153941 | 78.814 | 118 | 23 | 2 | 1 | 117 | 14 | 130 | 6.66e-60 | 191 |
| Msa0051530 | MtrunA17_Chr1g0153931 | 78.947 | 114 | 22 | 2 | 5 | 117 | 16 | 128 | 4.97e-59 | 182 |
| Msa0051530 | MtrunA17_Chr3g0118831 | 59.091 | 110 | 42 | 3 | 9 | 117 | 23 | 130 | 2.58e-34 | 123 |
| Msa0051530 | MtrunA17_Chr3g0118841 | 57.143 | 105 | 43 | 2 | 14 | 117 | 28 | 131 | 7.72e-32 | 116 |
| Msa0051530 | MtrunA17_Chr3g0118851 | 58.095 | 105 | 42 | 2 | 14 | 117 | 27 | 130 | 1.52e-31 | 115 |
| Msa0051530 | MtrunA17_Chr3g0118891 | 54.286 | 105 | 48 | 0 | 13 | 117 | 26 | 130 | 4.95e-31 | 114 |
| Msa0051530 | MtrunA17_Chr3g0118861 | 56.731 | 104 | 43 | 2 | 14 | 117 | 27 | 128 | 5.67e-31 | 114 |
| Msa0051530 | MtrunA17_Chr3g0118881 | 52.294 | 109 | 42 | 3 | 14 | 117 | 27 | 130 | 9.71e-29 | 108 |
| Msa0051530 | MtrunA17_Chr1g0199991 | 52.055 | 73 | 29 | 2 | 47 | 117 | 19 | 87 | 2.47e-20 | 84.7 |
| Msa0051530 | MtrunA17_Chr3g0131731 | 60.714 | 56 | 22 | 0 | 62 | 117 | 28 | 83 | 7.42e-19 | 80.5 |
| Msa0051530 | MtrunA17_Chr1g0199971 | 52.055 | 73 | 29 | 2 | 47 | 117 | 19 | 87 | 1.20e-18 | 80.1 |
| Msa0051530 | MtrunA17_Chr2g0304931 | 63.158 | 57 | 20 | 1 | 61 | 117 | 35 | 90 | 6.52e-18 | 77.8 |
| Msa0051530 | MtrunA17_Chr3g0090331 | 39.167 | 120 | 62 | 3 | 1 | 117 | 15 | 126 | 1.23e-17 | 77.0 |
| Msa0051530 | MtrunA17_Chr5g0431301 | 65.455 | 55 | 18 | 1 | 63 | 117 | 28 | 81 | 2.04e-17 | 76.6 |
| Msa0051530 | MtrunA17_Chr1g0165811 | 53.448 | 58 | 26 | 1 | 60 | 117 | 26 | 82 | 2.22e-17 | 75.1 |
| Msa0051530 | MtrunA17_Chr3g0094811 | 57.627 | 59 | 24 | 1 | 59 | 117 | 25 | 82 | 3.18e-17 | 75.9 |
| Msa0051530 | MtrunA17_Chr8g0385871 | 60.714 | 56 | 21 | 1 | 62 | 117 | 31 | 85 | 8.60e-17 | 74.7 |
| Msa0051530 | MtrunA17_Chr4g0020241 | 37.815 | 119 | 56 | 3 | 5 | 117 | 19 | 125 | 9.14e-17 | 74.7 |
| Msa0051530 | MtrunA17_Chr3g0126051 | 60.000 | 55 | 21 | 1 | 63 | 117 | 32 | 85 | 3.46e-16 | 73.2 |
| Msa0051530 | MtrunA17_Chr4g0038311 | 59.649 | 57 | 22 | 1 | 61 | 117 | 31 | 86 | 7.14e-16 | 72.0 |
| Msa0051530 | MtrunA17_Chr2g0281631 | 54.386 | 57 | 25 | 1 | 61 | 117 | 42 | 97 | 2.02e-15 | 67.0 |
| Msa0051530 | MtrunA17_Chr3g0126031 | 65.455 | 55 | 18 | 1 | 63 | 117 | 27 | 80 | 2.95e-15 | 70.5 |
| Msa0051530 | MtrunA17_Chr7g0219051 | 56.140 | 57 | 24 | 1 | 61 | 117 | 32 | 87 | 3.92e-15 | 70.1 |
| Msa0051530 | MtrunA17_Chr4g0047861 | 58.929 | 56 | 22 | 1 | 62 | 117 | 51 | 105 | 6.63e-15 | 69.3 |
| Msa0051530 | MtrunA17_Chr7g0221551 | 54.545 | 55 | 24 | 1 | 63 | 117 | 29 | 82 | 1.41e-14 | 68.6 |
| Msa0051530 | MtrunA17_Chr7g0229631 | 54.545 | 55 | 23 | 2 | 63 | 117 | 32 | 84 | 2.42e-14 | 65.1 |
| Msa0051530 | MtrunA17_Chr1g0204191 | 54.386 | 57 | 25 | 1 | 61 | 117 | 88 | 143 | 5.43e-14 | 66.6 |
| Msa0051530 | MtrunA17_Chr2g0318911 | 47.458 | 59 | 29 | 2 | 61 | 117 | 36 | 94 | 5.76e-14 | 66.6 |
| Msa0051530 | MtrunA17_Chr2g0309521 | 47.458 | 59 | 29 | 2 | 61 | 117 | 35 | 93 | 7.34e-14 | 66.2 |
| Msa0051530 | MtrunA17_Chr4g0068841 | 47.368 | 57 | 30 | 0 | 61 | 117 | 35 | 91 | 7.51e-14 | 66.2 |
| Msa0051530 | MtrunA17_Chr2g0281621 | 58.182 | 55 | 22 | 1 | 63 | 117 | 34 | 87 | 1.69e-13 | 65.5 |
| Msa0051530 | MtrunA17_Chr4g0068861 | 47.368 | 57 | 30 | 0 | 61 | 117 | 81 | 137 | 2.16e-13 | 65.1 |
| Msa0051530 | MtrunA17_Chr7g0234041 | 47.222 | 72 | 36 | 1 | 46 | 117 | 10 | 79 | 3.08e-13 | 64.7 |
| Msa0051530 | MtrunA17_Chr2g0309541 | 47.170 | 53 | 27 | 1 | 66 | 117 | 40 | 92 | 3.97e-13 | 64.3 |
| Msa0051530 | MtrunA17_Chr2g0309511 | 45.763 | 59 | 30 | 2 | 61 | 117 | 35 | 93 | 4.34e-13 | 64.3 |
| Msa0051530 | MtrunA17_Chr7g0229611 | 51.852 | 54 | 24 | 2 | 64 | 117 | 25 | 76 | 2.32e-12 | 58.5 |
| Msa0051530 | MtrunA17_Chr8g0338461 | 50.877 | 57 | 28 | 0 | 61 | 117 | 27 | 83 | 5.45e-12 | 61.2 |
| Msa0051530 | MtrunA17_Chr7g0234051 | 52.830 | 53 | 25 | 0 | 65 | 117 | 30 | 82 | 7.15e-12 | 60.8 |
| Msa0051530 | MtrunA17_Chr7g0229621 | 50.909 | 55 | 25 | 2 | 63 | 117 | 24 | 76 | 9.05e-12 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051530 | AT2G35770.1 | 53.521 | 71 | 29 | 1 | 47 | 117 | 24 | 90 | 9.39e-20 | 83.6 |
| Msa0051530 | AT3G07990.1 | 58.209 | 67 | 22 | 2 | 53 | 117 | 26 | 88 | 2.67e-19 | 82.4 |
| Msa0051530 | AT2G24010.1 | 62.295 | 61 | 22 | 1 | 57 | 117 | 23 | 82 | 4.20e-19 | 81.6 |
| Msa0051530 | AT3G63470.1 | 41.441 | 111 | 62 | 2 | 7 | 117 | 26 | 133 | 1.09e-18 | 80.5 |
| Msa0051530 | AT2G24010.2 | 61.667 | 60 | 22 | 1 | 57 | 116 | 23 | 81 | 3.12e-18 | 79.3 |
| Msa0051530 | AT1G28110.1 | 64.286 | 56 | 19 | 1 | 62 | 117 | 29 | 83 | 3.68e-18 | 79.0 |
| Msa0051530 | AT1G28110.2 | 64.286 | 56 | 19 | 1 | 62 | 117 | 29 | 83 | 3.68e-18 | 79.0 |
| Msa0051530 | AT3G56540.1 | 50.685 | 73 | 31 | 2 | 45 | 117 | 64 | 131 | 1.41e-17 | 75.9 |
| Msa0051530 | AT5G42230.1 | 66.667 | 57 | 18 | 1 | 61 | 117 | 25 | 80 | 1.60e-17 | 77.4 |
| Msa0051530 | AT5G42230.2 | 66.667 | 57 | 18 | 1 | 61 | 117 | 25 | 80 | 1.60e-17 | 77.4 |
| Msa0051530 | AT5G23210.3 | 60.656 | 61 | 23 | 1 | 57 | 117 | 44 | 103 | 2.78e-17 | 76.6 |
| Msa0051530 | AT5G23210.1 | 60.656 | 61 | 23 | 1 | 57 | 117 | 44 | 103 | 3.37e-17 | 76.3 |
| Msa0051530 | AT2G05850.1 | 47.727 | 88 | 42 | 3 | 31 | 117 | 32 | 116 | 6.61e-17 | 75.5 |
| Msa0051530 | AT2G12480.1 | 63.158 | 57 | 20 | 1 | 61 | 117 | 28 | 83 | 1.76e-16 | 74.3 |
| Msa0051530 | AT2G33530.1 | 55.932 | 59 | 25 | 1 | 59 | 117 | 28 | 85 | 2.57e-16 | 73.9 |
| Msa0051530 | AT2G24010.4 | 63.462 | 52 | 18 | 1 | 65 | 116 | 2 | 52 | 2.59e-16 | 73.6 |
| Msa0051530 | AT2G24000.2 | 62.069 | 58 | 20 | 2 | 61 | 117 | 27 | 83 | 3.27e-16 | 73.6 |
| Msa0051530 | AT3G52020.1 | 50.685 | 73 | 31 | 2 | 45 | 117 | 64 | 131 | 3.59e-16 | 73.6 |
| Msa0051530 | AT4G30610.1 | 60.656 | 61 | 22 | 2 | 58 | 117 | 26 | 85 | 3.75e-16 | 73.2 |
| Msa0051530 | AT5G42240.1 | 64.912 | 57 | 19 | 1 | 61 | 117 | 29 | 84 | 3.85e-16 | 73.2 |
| Msa0051530 | AT2G24000.1 | 62.069 | 58 | 20 | 2 | 61 | 117 | 27 | 83 | 4.05e-16 | 73.2 |
| Msa0051530 | AT2G24010.3 | 63.462 | 52 | 18 | 1 | 65 | 116 | 2 | 52 | 4.10e-16 | 73.2 |
| Msa0051530 | AT3G52010.1 | 45.714 | 70 | 38 | 0 | 48 | 117 | 48 | 117 | 5.20e-16 | 72.8 |
| Msa0051530 | AT2G12480.4 | 63.158 | 57 | 20 | 1 | 61 | 117 | 28 | 83 | 5.64e-16 | 72.8 |
| Msa0051530 | AT2G12480.3 | 63.158 | 57 | 20 | 1 | 61 | 117 | 28 | 83 | 5.77e-16 | 72.8 |
| Msa0051530 | AT2G12480.2 | 63.158 | 57 | 20 | 1 | 61 | 117 | 28 | 83 | 5.92e-16 | 72.8 |
| Msa0051530 | AT1G43780.1 | 63.636 | 55 | 19 | 1 | 63 | 117 | 36 | 89 | 9.74e-16 | 72.0 |
| Msa0051530 | AT2G35780.1 | 52.542 | 59 | 26 | 1 | 61 | 117 | 26 | 84 | 1.11e-15 | 72.0 |
| Msa0051530 | AT3G02110.1 | 54.386 | 57 | 25 | 1 | 61 | 117 | 34 | 89 | 1.98e-15 | 71.2 |
| Msa0051530 | AT3G52000.1 | 52.632 | 57 | 27 | 0 | 61 | 117 | 60 | 116 | 4.41e-15 | 70.5 |
| Msa0051530 | AT4G30810.1 | 43.662 | 71 | 40 | 0 | 47 | 117 | 20 | 90 | 5.40e-15 | 70.1 |
| Msa0051530 | AT4G15100.1 | 48.684 | 76 | 38 | 1 | 42 | 117 | 22 | 96 | 2.09e-14 | 68.6 |
| Msa0051530 | AT1G61130.1 | 58.182 | 55 | 22 | 1 | 63 | 117 | 30 | 83 | 3.36e-14 | 67.8 |
| Msa0051530 | AT1G11080.1 | 56.140 | 57 | 24 | 1 | 61 | 117 | 47 | 102 | 1.55e-13 | 65.9 |
| Msa0051530 | AT1G11080.2 | 56.140 | 57 | 24 | 1 | 61 | 117 | 47 | 102 | 1.55e-13 | 65.9 |
| Msa0051530 | AT5G08260.1 | 53.448 | 58 | 25 | 2 | 61 | 117 | 36 | 92 | 7.86e-12 | 60.8 |
| Msa0051530 | AT4G12910.1 | 45.614 | 57 | 31 | 0 | 61 | 117 | 31 | 87 | 6.81e-11 | 58.2 |
| Msa0051530 | AT4G12910.2 | 45.614 | 57 | 31 | 0 | 61 | 117 | 31 | 87 | 6.92e-11 | 58.2 |
Find 25 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTTATTCTATGGCTAAA+TGG | 0.278593 | 1_2:+5638262 | Msa0051530:CDS |
| CCACAAAGCCTCTTATTCTA+TGG | 0.291953 | 1_2:+5638254 | Msa0051530:CDS |
| ATGTTGTTGAACAACAATTA+AGG | 0.297399 | 1_2:+5638089 | Msa0051530:CDS |
| TGATCAAAATCCACCCCTTT+TGG | 0.306850 | 1_2:-5638151 | None:intergenic |
| GGCTTTGTGGAAGAATTTAG+AGG | 0.359274 | 1_2:-5638241 | None:intergenic |
| TGAACAACAATTAAGGTTGA+TGG | 0.361619 | 1_2:+5638096 | Msa0051530:CDS |
| GAGGTATTCACTTTGTTGAT+TGG | 0.364702 | 1_2:-5637969 | None:intergenic |
| CCATTTAGCCATAGAATAAG+AGG | 0.381266 | 1_2:-5638262 | None:intergenic |
| CCATAGAATAAGAGGCTTTG+TGG | 0.412073 | 1_2:-5638254 | None:intergenic |
| AAGGTTGATGGAAGCTGATA+AGG | 0.422221 | 1_2:+5638108 | Msa0051530:CDS |
| GTAACTGTTGATTCAAAAGC+AGG | 0.449053 | 1_2:+5638187 | Msa0051530:CDS |
| GATAAGGTGAAGGCTTTGCC+TGG | 0.468779 | 1_2:+5638124 | Msa0051530:CDS |
| GCTTTGCCTGGACAACCAAA+AGG | 0.470820 | 1_2:+5638136 | Msa0051530:CDS |
| CTTTGCCTGGACAACCAAAA+GGG | 0.504988 | 1_2:+5638137 | Msa0051530:CDS |
| TTGATTGAATAAACTTGTAG+AGG | 0.519280 | 1_2:-5637988 | None:intergenic |
| ACAAGTTTATTCAATCAAAG+AGG | 0.545775 | 1_2:+5637993 | Msa0051530:CDS |
| GCCTGGACAACCAAAAGGGG+TGG | 0.584025 | 1_2:+5638141 | Msa0051530:CDS |
| TGTTGATGAACATGTTTCAA+AGG | 0.590932 | 1_2:+5638063 | Msa0051530:CDS |
| TAATAAGATTCTCCATGTGA+AGG | 0.601123 | 1_2:-5638028 | None:intergenic |
| TAACTGTTGATTCAAAAGCA+GGG | 0.604168 | 1_2:+5638188 | Msa0051530:CDS |
| TCTCAACAAAAGCCTTCACA+TGG | 0.616190 | 1_2:+5638016 | Msa0051530:CDS |
| GATGGAAGCTGATAAGGTGA+AGG | 0.629148 | 1_2:+5638114 | Msa0051530:CDS |
| TTTGCCTGGACAACCAAAAG+GGG | 0.643225 | 1_2:+5638138 | Msa0051530:CDS |
| CTTATTCTATGGCTAAATGG+AGG | 0.653468 | 1_2:+5638265 | Msa0051530:CDS |
| CTTTGCATGAGATTGCAAAG+TGG | 0.677863 | 1_2:-5637946 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTACTCTATATATTTTA+AGG | - | chr1_2:5633952-5633971 | None:intergenic | 10.0% |
| !!! | ATGTTTCATATTTTATAATA+GGG | - | chr1_2:5634303-5634322 | None:intergenic | 10.0% |
| !!! | CACATATTTTAATTTTATTT+TGG | - | chr1_2:5634327-5634346 | None:intergenic | 10.0% |
| !!! | ATGAATTTATTTTTCTTAAA+TGG | + | chr1_2:5634465-5634484 | Msa0051530:intron | 10.0% |
| !! | ATAATCATCTTAATTAATTA+GGG | - | chr1_2:5634602-5634621 | None:intergenic | 10.0% |
| !! | TATAATCATCTTAATTAATT+AGG | - | chr1_2:5634603-5634622 | None:intergenic | 10.0% |
| !! | TATAAAAAAAATAAATTTCG+AGG | + | chr1_2:5637103-5637122 | Msa0051530:intron | 10.0% |
| !! | ATAAAAAAAATAAATTTCGA+GGG | + | chr1_2:5637104-5637123 | Msa0051530:intron | 10.0% |
| !!! | ATGTATATTTTAACATAAGA+GGG | - | chr1_2:5634012-5634031 | None:intergenic | 15.0% |
| !!! | AATGTATATTTTAACATAAG+AGG | - | chr1_2:5634013-5634032 | None:intergenic | 15.0% |
| !!! | GATGTTTCATATTTTATAAT+AGG | - | chr1_2:5634304-5634323 | None:intergenic | 15.0% |
| !!! | AATTTATTTTTCTTAAATGG+TGG | + | chr1_2:5634468-5634487 | Msa0051530:intron | 15.0% |
| !! | TTTAGATTATGATTCTTATT+TGG | - | chr1_2:5634564-5634583 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTGTTTATGTTTT+CGG | - | chr1_2:5634875-5634894 | None:intergenic | 15.0% |
| !!! | AATTACATTTTATGTACAAT+TGG | - | chr1_2:5635305-5635324 | None:intergenic | 15.0% |
| !! | TTATTGATAAATCATGTAAT+TGG | - | chr1_2:5635481-5635500 | None:intergenic | 15.0% |
| !! | ATTTAAATAGAGAAATAGAT+AGG | - | chr1_2:5636383-5636402 | None:intergenic | 15.0% |
| !!! | TTGATATGTTTTTTTTTAGA+TGG | - | chr1_2:5636426-5636445 | None:intergenic | 15.0% |
| !! | ATGAAGTAAATTTAAAAAAG+CGG | - | chr1_2:5636898-5636917 | None:intergenic | 15.0% |
| !! | ACTAATATATTAAAATAGGT+TGG | - | chr1_2:5636950-5636969 | None:intergenic | 15.0% |
| !! | GAGTACTAATATATTAAAAT+AGG | - | chr1_2:5636954-5636973 | None:intergenic | 15.0% |
| !!! | TAATAAACTTTTTTCAAAAG+AGG | - | chr1_2:5637006-5637025 | None:intergenic | 15.0% |
| !!! | CTATATTTATAAAGTACTAA+TGG | - | chr1_2:5637814-5637833 | None:intergenic | 15.0% |
| !! | CCAAAGTAAAATCTAAAAAA+AGG | - | chr1_2:5633670-5633689 | None:intergenic | 20.0% |
| !!! | CCTTTTTTTAGATTTTACTT+TGG | + | chr1_2:5633667-5633686 | Msa0051530:intron | 20.0% |
| !! | ATCTATTAATCAAAAACACA+AGG | - | chr1_2:5633695-5633714 | None:intergenic | 20.0% |
| !!! | AATAGTTACTTTTTATGTGT+GGG | - | chr1_2:5633733-5633752 | None:intergenic | 20.0% |
| !!! | AAAGCATTGTCATATATATA+TGG | + | chr1_2:5633887-5633906 | Msa0051530:intron | 20.0% |
| !!! | AAGCATTGTCATATATATAT+GGG | + | chr1_2:5633888-5633907 | Msa0051530:intron | 20.0% |
| !!! | TGTATATTTTAACATAAGAG+GGG | - | chr1_2:5634011-5634030 | None:intergenic | 20.0% |
| !!! | TAATATGTTTTGAATAAGAG+GGG | - | chr1_2:5634041-5634060 | None:intergenic | 20.0% |
| !!! | CTAATATGTTTTGAATAAGA+GGG | - | chr1_2:5634042-5634061 | None:intergenic | 20.0% |
| !!! | TCTAATATGTTTTGAATAAG+AGG | - | chr1_2:5634043-5634062 | None:intergenic | 20.0% |
| !! | AAAAAAAATCTAACACACTT+CGG | + | chr1_2:5634179-5634198 | Msa0051530:intron | 20.0% |
| !! | TTACTAAAGATAATAAAGCA+TGG | + | chr1_2:5634352-5634371 | Msa0051530:intron | 20.0% |
| !!! | ATTTCAATTTGTTCTTGTTT+AGG | + | chr1_2:5634626-5634645 | Msa0051530:intron | 20.0% |
| !!! | TTATAATACTTTTAGACCAT+AGG | - | chr1_2:5634719-5634738 | None:intergenic | 20.0% |
| !!! | TCTAAAAGTATTATAACGAT+TGG | + | chr1_2:5634723-5634742 | Msa0051530:intron | 20.0% |
| !! | ATGAACACTTATTTATTTGT+CGG | - | chr1_2:5634811-5634830 | None:intergenic | 20.0% |
| !! | AACTAAACACTCTATAATTA+GGG | - | chr1_2:5634841-5634860 | None:intergenic | 20.0% |
| !! | TAACTAAACACTCTATAATT+AGG | - | chr1_2:5634842-5634861 | None:intergenic | 20.0% |
| !!! | CTTTTGTTTGTTTTTTAAGT+TGG | - | chr1_2:5635155-5635174 | None:intergenic | 20.0% |
| !!! | TTTTTAAGACAATACAATGT+GGG | - | chr1_2:5635388-5635407 | None:intergenic | 20.0% |
| !!! | TTTTTTAAGACAATACAATG+TGG | - | chr1_2:5635389-5635408 | None:intergenic | 20.0% |
| !!! | AAAGTATAATTCAAGTTAGT+AGG | + | chr1_2:5636207-5636226 | Msa0051530:intron | 20.0% |
| !! | TGTAATTTAACTAGTTAGTT+AGG | + | chr1_2:5636260-5636279 | Msa0051530:intron | 20.0% |
| !!! | TGGAGTAAAATTTAATTTGT+GGG | + | chr1_2:5636587-5636606 | Msa0051530:intron | 20.0% |
| !! | TGAAGTAAATTTAAAAAAGC+GGG | - | chr1_2:5636897-5636916 | None:intergenic | 20.0% |
| !!! | AAATGTTGGAATATTTTCAA+AGG | - | chr1_2:5637396-5637415 | None:intergenic | 20.0% |
| !! | AAGTCATTACTCTATAATTT+AGG | - | chr1_2:5637554-5637573 | None:intergenic | 20.0% |
| !!! | ATTTATAAAGTACTAATGGA+TGG | - | chr1_2:5637810-5637829 | None:intergenic | 20.0% |
| !!! | CAATAGTTACTTTTTATGTG+TGG | - | chr1_2:5633734-5633753 | None:intergenic | 25.0% |
| !!! | TGTAGATTTTAACATAAGAG+GGG | - | chr1_2:5634114-5634133 | None:intergenic | 25.0% |
| !!! | GTGTAGATTTTAACATAAGA+GGG | - | chr1_2:5634115-5634134 | None:intergenic | 25.0% |
| !!! | AGTGTAGATTTTAACATAAG+AGG | - | chr1_2:5634116-5634135 | None:intergenic | 25.0% |
| ! | TTCGGAAAAAAATAGTATTG+CGG | + | chr1_2:5634197-5634216 | Msa0051530:intron | 25.0% |
| !! | CACATATATCTAAAGTTGTT+AGG | + | chr1_2:5634693-5634712 | Msa0051530:intron | 25.0% |
| !! | ATAGAGTGTTTAGTTACTTA+TGG | + | chr1_2:5634846-5634865 | Msa0051530:intron | 25.0% |
| ! | TTATTCATTCAGAAACTTAG+TGG | - | chr1_2:5634973-5634992 | None:intergenic | 25.0% |
| ! | ATGAATAATTGTGTGTGTAA+CGG | + | chr1_2:5634985-5635004 | Msa0051530:intron | 25.0% |
| ! | TTACACACACAATTATTCAT+TGG | - | chr1_2:5634985-5635004 | None:intergenic | 25.0% |
| ! | ATGAATAATTGTGTGTGTAA+CGG | + | chr1_2:5634985-5635004 | Msa0051530:intron | 25.0% |
| ! | TCATGTAATTGGAAAAATTG+AGG | - | chr1_2:5635470-5635489 | None:intergenic | 25.0% |
| !! | ATTCTATTTCTTTCCCAAAT+CGG | - | chr1_2:5635530-5635549 | None:intergenic | 25.0% |
| !!! | TCATTTTAGAGATGTTTTAG+AGG | - | chr1_2:5635601-5635620 | None:intergenic | 25.0% |
| ! | TAAATAAATGTGCACAAACA+TGG | + | chr1_2:5635631-5635650 | Msa0051530:intron | 25.0% |
| ! | TTAAAAATCTCATAGCTCAT+GGG | + | chr1_2:5635995-5636014 | Msa0051530:intron | 25.0% |
| ! | TTCAACTTTCAAATCTTCAA+TGG | - | chr1_2:5636135-5636154 | None:intergenic | 25.0% |
| ! | ATTGAAGATTTGAAAGTTGA+AGG | + | chr1_2:5636134-5636153 | Msa0051530:intron | 25.0% |
| ! | TGTTTAACCTTCAATTAAGA+GGG | + | chr1_2:5636178-5636197 | Msa0051530:intron | 25.0% |
| !!! | CACATGGTTTTTTTTTTTCT+AGG | + | chr1_2:5636494-5636513 | Msa0051530:intron | 25.0% |
| !! | GATTACCCATAATTTTTGAA+GGG | - | chr1_2:5636523-5636542 | None:intergenic | 25.0% |
| !! | TGATTACCCATAATTTTTGA+AGG | - | chr1_2:5636524-5636543 | None:intergenic | 25.0% |
| ! | CACATAAACAAATTTACAAG+TGG | + | chr1_2:5636567-5636586 | Msa0051530:intron | 25.0% |
| !!! | GTGGAGTAAAATTTAATTTG+TGG | + | chr1_2:5636586-5636605 | Msa0051530:intron | 25.0% |
| ! | AAAAAAATAAATTTCGAGGG+TGG | + | chr1_2:5637107-5637126 | Msa0051530:intron | 25.0% |
| ! | AAAAAATAAATTTCGAGGGT+GGG | + | chr1_2:5637108-5637127 | Msa0051530:intron | 25.0% |
| ! | AAATAGAGAGATATATCAAG+AGG | - | chr1_2:5637303-5637322 | None:intergenic | 25.0% |
| ! | ATGTAATTATGAATGTAGAC+AGG | - | chr1_2:5637648-5637667 | None:intergenic | 25.0% |
| !! | TTTCATACGTTTTGCTAATT+AGG | - | chr1_2:5637745-5637764 | None:intergenic | 25.0% |
| !!! | AACATGAGAGGTTTTAATAT+AGG | + | chr1_2:5637839-5637858 | Msa0051530:intron | 25.0% |
| ! | TTGATTGAATAAACTTGTAG+AGG | - | chr1_2:5637991-5638010 | None:intergenic | 25.0% |
| ! | ACAAGTTTATTCAATCAAAG+AGG | + | chr1_2:5637993-5638012 | Msa0051530:CDS | 25.0% |
| ! | ATGTTGTTGAACAACAATTA+AGG | + | chr1_2:5638089-5638108 | Msa0051530:CDS | 25.0% |
| TTTAGGGGAGAAAAAAATGT+TGG | + | chr1_2:5633626-5633645 | Msa0051530:intron | 30.0% | |
| !! | TTCAAGCATTTTTGAAGGAA+GGG | - | chr1_2:5633981-5634000 | None:intergenic | 30.0% |
| !! | ATTCAAGCATTTTTGAAGGA+AGG | - | chr1_2:5633982-5634001 | None:intergenic | 30.0% |
| ! | GGTAATTCAAGCATTTTTGA+AGG | - | chr1_2:5633986-5634005 | None:intergenic | 30.0% |
| !!! | TATTTTAACATAAGAGGGGA+GGG | - | chr1_2:5634007-5634026 | None:intergenic | 30.0% |
| !!! | ATATTTTAACATAAGAGGGG+AGG | - | chr1_2:5634008-5634027 | None:intergenic | 30.0% |
| GTAATTCAAGCTTCTCTTAA+GGG | - | chr1_2:5634083-5634102 | None:intergenic | 30.0% | |
| TGTAATTCAAGCTTCTCTTA+AGG | - | chr1_2:5634084-5634103 | None:intergenic | 30.0% | |
| !!! | TGTTTTTTAAGTTGGATCGA+TGG | - | chr1_2:5635147-5635166 | None:intergenic | 30.0% |
| ! | CATTTTATGTACAATTGGCT+GGG | - | chr1_2:5635300-5635319 | None:intergenic | 30.0% |
| ! | ACATTTTATGTACAATTGGC+TGG | - | chr1_2:5635301-5635320 | None:intergenic | 30.0% |
| ! | TTCTTCCATTCTTTTGATCT+TGG | + | chr1_2:5635344-5635363 | Msa0051530:intron | 30.0% |
| ! | TCTTCCATTCTTTTGATCTT+GGG | + | chr1_2:5635345-5635364 | Msa0051530:intron | 30.0% |
| AGGAGTTTCTCATAGTTTAA+GGG | - | chr1_2:5635581-5635600 | None:intergenic | 30.0% | |
| ! | GAAGTGACAAGTTAAGTTTT+GGG | - | chr1_2:5635689-5635708 | None:intergenic | 30.0% |
| ! | AGAAGTGACAAGTTAAGTTT+TGG | - | chr1_2:5635690-5635709 | None:intergenic | 30.0% |
| !!! | TCTTGCTATTTTGTTACTTG+AGG | - | chr1_2:5635713-5635732 | None:intergenic | 30.0% |
| GCGTGTCATCTAAATATTTA+TGG | - | chr1_2:5635747-5635766 | None:intergenic | 30.0% | |
| AAAGCTGGAAATAGAACATA+CGG | - | chr1_2:5635795-5635814 | None:intergenic | 30.0% | |
| !!! | ATTTGCTTTTTTGCGAAAGT+TGG | - | chr1_2:5635828-5635847 | None:intergenic | 30.0% |
| TGAGATGTATTAAACTTCAC+TGG | - | chr1_2:5635868-5635887 | None:intergenic | 30.0% | |
| GTTAAAAATCTCATAGCTCA+TGG | + | chr1_2:5635994-5636013 | Msa0051530:intron | 30.0% | |
| CTTCGTGATCAATTAAACAA+AGG | + | chr1_2:5636051-5636070 | Msa0051530:intron | 30.0% | |
| GTGTTTAACCTTCAATTAAG+AGG | + | chr1_2:5636177-5636196 | Msa0051530:intron | 30.0% | |
| GTTTAACCTTCAATTAAGAG+GGG | + | chr1_2:5636179-5636198 | Msa0051530:intron | 30.0% | |
| TTTAACCTTCAATTAAGAGG+GGG | + | chr1_2:5636180-5636199 | Msa0051530:intron | 30.0% | |
| ACTAACTAACCAAGTTAACT+AGG | + | chr1_2:5636310-5636329 | Msa0051530:intron | 30.0% | |
| CATGTGAATTCTATAACGAA+GGG | - | chr1_2:5636480-5636499 | None:intergenic | 30.0% | |
| TAAATTTAAAAAAGCGGGTG+CGG | - | chr1_2:5636892-5636911 | None:intergenic | 30.0% | |
| AAAAATAAATTTCGAGGGTG+GGG | + | chr1_2:5637109-5637128 | Msa0051530:intron | 30.0% | |
| ! | AATGTGACAACTTCTAAGAA+TGG | + | chr1_2:5637334-5637353 | Msa0051530:intron | 30.0% |
| TTCCAACATTTACTATGCAT+TGG | + | chr1_2:5637405-5637424 | Msa0051530:intron | 30.0% | |
| TTCCAATGCATAGTAAATGT+TGG | - | chr1_2:5637410-5637429 | None:intergenic | 30.0% | |
| TTATGCAGCCTATACAATAA+AGG | - | chr1_2:5637615-5637634 | None:intergenic | 30.0% | |
| AATATAGCACAAAACATGAG+AGG | + | chr1_2:5637827-5637846 | Msa0051530:intron | 30.0% | |
| !!! | TGTCACAAAAAGTACTTTTG+TGG | + | chr1_2:5637903-5637922 | Msa0051530:intron | 30.0% |
| TAATAAGATTCTCCATGTGA+AGG | - | chr1_2:5638031-5638050 | None:intergenic | 30.0% | |
| ! | TGTTGATGAACATGTTTCAA+AGG | + | chr1_2:5638063-5638082 | Msa0051530:CDS | 30.0% |
| TGAACAACAATTAAGGTTGA+TGG | + | chr1_2:5638096-5638115 | Msa0051530:CDS | 30.0% | |
| !! | TAACTGTTGATTCAAAAGCA+GGG | + | chr1_2:5638188-5638207 | Msa0051530:CDS | 30.0% |
| ! | AGAACTTTTCTACTACTTTG+TGG | + | chr1_2:5638213-5638232 | Msa0051530:CDS | 30.0% |
| ! | TTTTTCTCCCCTAAACATAG+CGG | - | chr1_2:5633621-5633640 | None:intergenic | 35.0% |
| !! | TATGTTTTGAATAAGAGGGG+AGG | - | chr1_2:5634038-5634057 | None:intergenic | 35.0% |
| TGTTAATTATGCCTAGACGA+TGG | + | chr1_2:5634520-5634539 | Msa0051530:intron | 35.0% | |
| ! | ATCTAAAGTTGTTAGGCCTA+TGG | + | chr1_2:5634700-5634719 | Msa0051530:intron | 35.0% |
| CATACTCCATAAAAAAAGCG+AGG | + | chr1_2:5634903-5634922 | Msa0051530:intron | 35.0% | |
| !!! | TTCCATCCTCGCTTTTTTTA+TGG | - | chr1_2:5634912-5634931 | None:intergenic | 35.0% |
| ! | GTGTAACGGTCTCATTTTAT+AGG | + | chr1_2:5634999-5635018 | Msa0051530:intron | 35.0% |
| TTTATAGGCAAGTGTCCATA+TGG | + | chr1_2:5635014-5635033 | Msa0051530:intron | 35.0% | |
| TTATAGGCAAGTGTCCATAT+GGG | + | chr1_2:5635015-5635034 | Msa0051530:intron | 35.0% | |
| AAACTCAATGCAAACCCATA+TGG | - | chr1_2:5635032-5635051 | None:intergenic | 35.0% | |
| ATGGGTTTGCATTGAGTTTA+TGG | + | chr1_2:5635033-5635052 | Msa0051530:intron | 35.0% | |
| ! | GTGTAACGGTCTCATTTTAT+AGG | + | chr1_2:5634999-5635018 | Msa0051530:intron | 35.0% |
| TTTATAGGCAAGTGTCCATA+TGG | + | chr1_2:5635014-5635033 | Msa0051530:intron | 35.0% | |
| TTATAGGCAAGTGTCCATAT+GGG | + | chr1_2:5635015-5635034 | Msa0051530:intron | 35.0% | |
| AAACTCAATGCAAACCCATA+TGG | - | chr1_2:5635032-5635051 | None:intergenic | 35.0% | |
| ATGGGTTTGCATTGAGTTTA+TGG | + | chr1_2:5635033-5635052 | Msa0051530:intron | 35.0% | |
| AATTATGTGCCATCTAGAAG+TGG | + | chr1_2:5635235-5635254 | Msa0051530:intron | 35.0% | |
| AAGTCCCAAGATCAAAAGAA+TGG | - | chr1_2:5635352-5635371 | None:intergenic | 35.0% | |
| ! | ATTCTTTTGATCTTGGGACT+TGG | + | chr1_2:5635351-5635370 | Msa0051530:intron | 35.0% |
| ! | TTCTTTTGATCTTGGGACTT+GGG | + | chr1_2:5635352-5635371 | Msa0051530:intron | 35.0% |
| GAACAATATACAGCTTGAGA+AGG | - | chr1_2:5635414-5635433 | None:intergenic | 35.0% | |
| !! | AACTATCAAGTTGCCGATTT+GGG | + | chr1_2:5635514-5635533 | Msa0051530:intron | 35.0% |
| GAGGAGTTTCTCATAGTTTA+AGG | - | chr1_2:5635582-5635601 | None:intergenic | 35.0% | |
| !!! | TAAGTTTTGGGTTGTGATGA+CGG | - | chr1_2:5635677-5635696 | None:intergenic | 35.0% |
| ! | GTTGGTAAGTTAGTAAAAGC+TGG | - | chr1_2:5635810-5635829 | None:intergenic | 35.0% |
| TACATCTCATCTTTCAATGC+AGG | + | chr1_2:5635879-5635898 | Msa0051530:intron | 35.0% | |
| TAAATTGCATCCATATGCCT+TGG | - | chr1_2:5635908-5635927 | None:intergenic | 35.0% | |
| ATCACGAAGAAAGTGAAACT+TGG | - | chr1_2:5636040-5636059 | None:intergenic | 35.0% | |
| CTTTCAAATCTTCAATGGCT+TGG | - | chr1_2:5636130-5636149 | None:intergenic | 35.0% | |
| TTTGAAAGTTGAAGGACATG+AGG | + | chr1_2:5636142-5636161 | Msa0051530:intron | 35.0% | |
| CCATGTGAATTCTATAACGA+AGG | - | chr1_2:5636481-5636500 | None:intergenic | 35.0% | |
| CCTTCGTTATAGAATTCACA+TGG | + | chr1_2:5636478-5636497 | Msa0051530:intron | 35.0% | |
| AGGCTACCCTTCAAAAATTA+TGG | + | chr1_2:5636514-5636533 | Msa0051530:intron | 35.0% | |
| GGCTACCCTTCAAAAATTAT+GGG | + | chr1_2:5636515-5636534 | Msa0051530:intron | 35.0% | |
| ACAATTTCTCAAAGATAGCC+CGG | + | chr1_2:5636667-5636686 | Msa0051530:intron | 35.0% | |
| AAATTTAAAAAAGCGGGTGC+GGG | - | chr1_2:5636891-5636910 | None:intergenic | 35.0% | |
| ! | TTCAAATTTTACCCCCGATA+TGG | + | chr1_2:5637180-5637199 | Msa0051530:intron | 35.0% |
| CACTACTGCCTTTATTGTAT+AGG | + | chr1_2:5637604-5637623 | Msa0051530:intron | 35.0% | |
| CTATATCCATGTACTACAGT+AGG | - | chr1_2:5637694-5637713 | None:intergenic | 35.0% | |
| ! | GAGGTATTCACTTTGTTGAT+TGG | - | chr1_2:5637972-5637991 | None:intergenic | 35.0% |
| !! | GTGGATTTTGATCAATATGC+TGG | + | chr1_2:5638160-5638179 | Msa0051530:CDS | 35.0% |
| !! | GTAACTGTTGATTCAAAAGC+AGG | + | chr1_2:5638187-5638206 | Msa0051530:CDS | 35.0% |
| CCATTTAGCCATAGAATAAG+AGG | - | chr1_2:5638265-5638284 | None:intergenic | 35.0% | |
| CCTCTTATTCTATGGCTAAA+TGG | + | chr1_2:5638262-5638281 | Msa0051530:CDS | 35.0% | |
| CTTATTCTATGGCTAAATGG+AGG | + | chr1_2:5638265-5638284 | Msa0051530:CDS | 35.0% | |
| ! | TTTTCTCCCCTAAACATAGC+GGG | - | chr1_2:5633620-5633639 | None:intergenic | 40.0% |
| TTCAAGCTTCTCTTAAGGGA+GGG | - | chr1_2:5634079-5634098 | None:intergenic | 40.0% | |
| ATTCAAGCTTCTCTTAAGGG+AGG | - | chr1_2:5634080-5634099 | None:intergenic | 40.0% | |
| TAATTATGCCTAGACGATGG+CGG | + | chr1_2:5634523-5634542 | Msa0051530:intron | 40.0% | |
| CTCCATAAAAAAAGCGAGGA+TGG | + | chr1_2:5634907-5634926 | Msa0051530:intron | 40.0% | |
| ATTCAGAAACTTAGTGGTGC+AGG | - | chr1_2:5634967-5634986 | None:intergenic | 40.0% | |
| ! | AAAAGCATGCCACTTCTAGA+TGG | - | chr1_2:5635247-5635266 | None:intergenic | 40.0% |
| ! | GGAAAAATTGAGGCATCTCA+TGG | - | chr1_2:5635460-5635479 | None:intergenic | 40.0% |
| ! | CAACTATCAAGTTGCCGATT+TGG | + | chr1_2:5635513-5635532 | Msa0051530:intron | 40.0% |
| !!! | AAGTTTTGGGTTGTGATGAC+GGG | - | chr1_2:5635676-5635695 | None:intergenic | 40.0% |
| ATTTAGATGACACGCCTTTC+CGG | + | chr1_2:5635752-5635771 | Msa0051530:intron | 40.0% | |
| GGTTATATGAACACCCATTC+CGG | - | chr1_2:5635774-5635793 | None:intergenic | 40.0% | |
| ATGTTGCTCGAAATGAAGAC+TGG | + | chr1_2:5635927-5635946 | Msa0051530:intron | 40.0% | |
| TATCACCCCCTCTTAATTGA+AGG | - | chr1_2:5636188-5636207 | None:intergenic | 40.0% | |
| TCTAGGCAACCTAGTTAACT+TGG | - | chr1_2:5636322-5636341 | None:intergenic | 40.0% | |
| TAGTTAGTTGCTTGCACTCT+AGG | - | chr1_2:5636339-5636358 | None:intergenic | 40.0% | |
| AGAGTGCAAGCAACTAACTA+AGG | + | chr1_2:5636339-5636358 | Msa0051530:intron | 40.0% | |
| ! | CTAAGGTGGTTCTGTTGTAT+TGG | + | chr1_2:5636356-5636375 | Msa0051530:intron | 40.0% |
| ! | GGGCTATCTTTGAGAAATTG+TGG | - | chr1_2:5636668-5636687 | None:intergenic | 40.0% |
| TCATATGAATGATCGAGGTC+CGG | - | chr1_2:5636689-5636708 | None:intergenic | 40.0% | |
| GGTGATCATATGAATGATCG+AGG | - | chr1_2:5636694-5636713 | None:intergenic | 40.0% | |
| GGTGAAGCAACTCAATCTAT+GGG | - | chr1_2:5636715-5636734 | None:intergenic | 40.0% | |
| AGGTGAAGCAACTCAATCTA+TGG | - | chr1_2:5636716-5636735 | None:intergenic | 40.0% | |
| !! | CGGGTGGATTTGGATTTTTA+GGG | + | chr1_2:5636826-5636845 | Msa0051530:intron | 40.0% |
| !! | GGGTGGATTTGGATTTTTAG+GGG | + | chr1_2:5636827-5636846 | Msa0051530:intron | 40.0% |
| !! | ATTTGGATTTTTAGGGGCCA+GGG | + | chr1_2:5636833-5636852 | Msa0051530:intron | 40.0% |
| AATTTAAAAAAGCGGGTGCG+GGG | - | chr1_2:5636890-5636909 | None:intergenic | 40.0% | |
| ! | ATTTTACCCCCGATATGGTT+TGG | + | chr1_2:5637185-5637204 | Msa0051530:intron | 40.0% |
| ! | TTTTACCCCCGATATGGTTT+GGG | + | chr1_2:5637186-5637205 | Msa0051530:intron | 40.0% |
| ATCAAGAGGTGAAGTAGACA+TGG | - | chr1_2:5637289-5637308 | None:intergenic | 40.0% | |
| CCATGTACTACAGTAGGAAA+AGG | - | chr1_2:5637688-5637707 | None:intergenic | 40.0% | |
| ! | CCTTTTCCTACTGTAGTACA+TGG | + | chr1_2:5637685-5637704 | Msa0051530:intron | 40.0% |
| CTTTGCATGAGATTGCAAAG+TGG | - | chr1_2:5637949-5637968 | None:intergenic | 40.0% | |
| TCTCAACAAAAGCCTTCACA+TGG | + | chr1_2:5638016-5638035 | Msa0051530:CDS | 40.0% | |
| !! | AAGGTTGATGGAAGCTGATA+AGG | + | chr1_2:5638108-5638127 | Msa0051530:CDS | 40.0% |
| ! | TGATCAAAATCCACCCCTTT+TGG | - | chr1_2:5638154-5638173 | None:intergenic | 40.0% |
| ! | GGCTTTGTGGAAGAATTTAG+AGG | - | chr1_2:5638244-5638263 | None:intergenic | 40.0% |
| CCATAGAATAAGAGGCTTTG+TGG | - | chr1_2:5638257-5638276 | None:intergenic | 40.0% | |
| CCACAAAGCCTCTTATTCTA+TGG | + | chr1_2:5638254-5638273 | Msa0051530:CDS | 40.0% | |
| TTTCTCCCCTAAACATAGCG+GGG | - | chr1_2:5633619-5633638 | None:intergenic | 45.0% | |
| TCAAGCTTCTCTTAAGGGAG+GGG | - | chr1_2:5634078-5634097 | None:intergenic | 45.0% | |
| AAACTTAGTGGTGCAGGTGA+AGG | - | chr1_2:5634961-5634980 | None:intergenic | 45.0% | |
| TACCAAGAAGAACCATGCAC+CGG | + | chr1_2:5635185-5635204 | Msa0051530:intron | 45.0% | |
| ! | CTAGAAGTGGCATGCTTTTG+AGG | + | chr1_2:5635248-5635267 | Msa0051530:intron | 45.0% |
| ! | TGAGGCATCTCATGGAGTTA+TGG | - | chr1_2:5635452-5635471 | None:intergenic | 45.0% |
| TATGAACACCCATTCCGGAA+AGG | - | chr1_2:5635769-5635788 | None:intergenic | 45.0% | |
| TCTTTCAATGCAGGATGCCA+AGG | + | chr1_2:5635888-5635907 | Msa0051530:intron | 45.0% | |
| TTGCTTGGTCATCTGTCTTG+CGG | - | chr1_2:5636095-5636114 | None:intergenic | 45.0% | |
| ! | TGGTGAGTGCATTTGTTGCT+TGG | - | chr1_2:5636110-5636129 | None:intergenic | 45.0% |
| GTGCAAGCAACTAACTAAGG+TGG | + | chr1_2:5636342-5636361 | Msa0051530:intron | 45.0% | |
| CATATGAATGATCGAGGTCC+GGG | - | chr1_2:5636688-5636707 | None:intergenic | 45.0% | |
| GAGTTGCTTCACCTTAGACA+TGG | + | chr1_2:5636722-5636741 | Msa0051530:intron | 45.0% | |
| GGCTTATGTTGCCATGTCTA+AGG | - | chr1_2:5636736-5636755 | None:intergenic | 45.0% | |
| ! | GCTTTTCCCCGTTAAATTCG+GGG | - | chr1_2:5636785-5636804 | None:intergenic | 45.0% |
| ! | GGCTTTTCCCCGTTAAATTC+GGG | - | chr1_2:5636786-5636805 | None:intergenic | 45.0% |
| ! | CGGCTTTTCCCCGTTAAATT+CGG | - | chr1_2:5636787-5636806 | None:intergenic | 45.0% |
| !! | GCGGGTGGATTTGGATTTTT+AGG | + | chr1_2:5636825-5636844 | Msa0051530:intron | 45.0% |
| !! | GATTTGGATTTTTAGGGGCC+AGG | + | chr1_2:5636832-5636851 | Msa0051530:intron | 45.0% |
| !! | TTTGGATTTTTAGGGGCCAG+GGG | + | chr1_2:5636834-5636853 | Msa0051530:intron | 45.0% |
| AATAAATTTCGAGGGTGGGG+TGG | + | chr1_2:5637112-5637131 | Msa0051530:intron | 45.0% | |
| ATAAATTTCGAGGGTGGGGT+GGG | + | chr1_2:5637113-5637132 | Msa0051530:intron | 45.0% | |
| AGGTGAAGTAGACATGGCAA+CGG | - | chr1_2:5637283-5637302 | None:intergenic | 45.0% | |
| GATGGAAGCTGATAAGGTGA+AGG | + | chr1_2:5638114-5638133 | Msa0051530:CDS | 45.0% | |
| CTTTGCCTGGACAACCAAAA+GGG | + | chr1_2:5638137-5638156 | Msa0051530:CDS | 45.0% | |
| TTTGCCTGGACAACCAAAAG+GGG | + | chr1_2:5638138-5638157 | Msa0051530:CDS | 45.0% | |
| !! | AATAAATAAAAATATATTGA+GGG | - | chr1_2:5634144-5634163 | None:intergenic | 5.0% |
| !! | AAATAAATAAAAATATATTG+AGG | - | chr1_2:5634145-5634164 | None:intergenic | 5.0% |
| !!! | ACATATTTTAATTTTATTTT+GGG | - | chr1_2:5634326-5634345 | None:intergenic | 5.0% |
| !! | CATTTAATTAAAATTTAAAT+TGG | - | chr1_2:5637777-5637796 | None:intergenic | 5.0% |
| TAGAGCCCCCGCTATGTTTA+GGG | + | chr1_2:5633610-5633629 | Msa0051530:intron | 50.0% | |
| TTCTCCCCTAAACATAGCGG+GGG | - | chr1_2:5633618-5633637 | None:intergenic | 50.0% | |
| GCTTTATACCGCCATCGTCT+AGG | - | chr1_2:5634534-5634553 | None:intergenic | 50.0% | |
| TTCCGGTGCATGGTTCTTCT+TGG | - | chr1_2:5635190-5635209 | None:intergenic | 50.0% | |
| ATGTGCTTCAGCATGCGTTC+CGG | - | chr1_2:5635207-5635226 | None:intergenic | 50.0% | |
| !!! | TGGCATGCTTTTGAGGTGTG+AGG | + | chr1_2:5635255-5635274 | Msa0051530:intron | 50.0% |
| ATGACACGCCTTTCCGGAAT+GGG | + | chr1_2:5635758-5635777 | Msa0051530:intron | 50.0% | |
| ATGCAGGATGCCAAGGCATA+TGG | + | chr1_2:5635895-5635914 | Msa0051530:intron | 50.0% | |
| TTTCCCCGTTAAATTCGGGG+CGG | - | chr1_2:5636782-5636801 | None:intergenic | 50.0% | |
| ! | CGGGGAAAAGCCGATTTAAC+CGG | + | chr1_2:5636794-5636813 | Msa0051530:intron | 50.0% |
| ! | GGGGAAAAGCCGATTTAACC+GGG | + | chr1_2:5636795-5636814 | Msa0051530:intron | 50.0% |
| ! | AAAGCCGATTTAACCGGGTG+CGG | + | chr1_2:5636800-5636819 | Msa0051530:intron | 50.0% |
| TAAATTTCGAGGGTGGGGTG+GGG | + | chr1_2:5637114-5637133 | Msa0051530:intron | 50.0% | |
| GTGAAGTAGACATGGCAACG+GGG | - | chr1_2:5637281-5637300 | None:intergenic | 50.0% | |
| GGTGAAGTAGACATGGCAAC+GGG | - | chr1_2:5637282-5637301 | None:intergenic | 50.0% | |
| GATAAGGTGAAGGCTTTGCC+TGG | + | chr1_2:5638124-5638143 | Msa0051530:CDS | 50.0% | |
| GCTTTGCCTGGACAACCAAA+AGG | + | chr1_2:5638136-5638155 | Msa0051530:CDS | 50.0% | |
| CTAGAGCCCCCGCTATGTTT+AGG | + | chr1_2:5633609-5633628 | Msa0051530:intron | 55.0% | |
| AGAGCCCCCGCTATGTTTAG+GGG | + | chr1_2:5633611-5633630 | Msa0051530:intron | 55.0% | |
| GCAGGTGAAGGCAAGCATCA+AGG | - | chr1_2:5634949-5634968 | None:intergenic | 55.0% | |
| GGAACGCATGCTGAAGCACA+TGG | + | chr1_2:5635206-5635225 | Msa0051530:intron | 55.0% | |
| TGAGGTGTGAGGTGTGTCCT+TGG | + | chr1_2:5635266-5635285 | Msa0051530:intron | 55.0% | |
| GAGGTGTGAGGTGTGTCCTT+GGG | + | chr1_2:5635267-5635286 | Msa0051530:intron | 55.0% | |
| GATGACACGCCTTTCCGGAA+TGG | + | chr1_2:5635757-5635776 | Msa0051530:intron | 55.0% | |
| TTCCCCGTTAAATTCGGGGC+GGG | - | chr1_2:5636781-5636800 | None:intergenic | 55.0% | |
| ! | AAGCCGATTTAACCGGGTGC+GGG | + | chr1_2:5636801-5636820 | Msa0051530:intron | 55.0% |
| TTAAAAAAGCGGGTGCGGGG+CGG | - | chr1_2:5636887-5636906 | None:intergenic | 55.0% | |
| AAATTTCGAGGGTGGGGTGG+GGG | + | chr1_2:5637115-5637134 | Msa0051530:intron | 55.0% | |
| CCGTTCCCAAACCATATCGG+GGG | - | chr1_2:5637194-5637213 | None:intergenic | 55.0% | |
| ! | CCCCCGATATGGTTTGGGAA+CGG | + | chr1_2:5637191-5637210 | Msa0051530:intron | 55.0% |
| CCCGTTCCCAAACCATATCG+GGG | - | chr1_2:5637195-5637214 | None:intergenic | 55.0% | |
| ! | CCCCGATATGGTTTGGGAAC+GGG | + | chr1_2:5637192-5637211 | Msa0051530:intron | 55.0% |
| CCCCGTTCCCAAACCATATC+GGG | - | chr1_2:5637196-5637215 | None:intergenic | 55.0% | |
| ! | CCCGATATGGTTTGGGAACG+GGG | + | chr1_2:5637193-5637212 | Msa0051530:intron | 55.0% |
| CCCCCGTTCCCAAACCATAT+CGG | - | chr1_2:5637197-5637216 | None:intergenic | 55.0% | |
| ! | CCGATATGGTTTGGGAACGG+GGG | + | chr1_2:5637194-5637213 | Msa0051530:intron | 55.0% |
| ! | ATATGGTTTGGGAACGGGGG+CGG | + | chr1_2:5637197-5637216 | Msa0051530:intron | 55.0% |
| AAGTAGACATGGCAACGGGG+CGG | - | chr1_2:5637278-5637297 | None:intergenic | 55.0% | |
| !! | TCCACCCCTTTTGGTTGTCC+AGG | - | chr1_2:5638145-5638164 | None:intergenic | 55.0% |
| TCAGCATGCGTTCCGGTGCA+TGG | - | chr1_2:5635200-5635219 | None:intergenic | 60.0% | |
| GTGTGAGGTGTGTCCTTGGG+CGG | + | chr1_2:5635270-5635289 | Msa0051530:intron | 60.0% | |
| TCCCCGTTAAATTCGGGGCG+GGG | - | chr1_2:5636780-5636799 | None:intergenic | 60.0% | |
| GCACCCGCACCCGGTTAAAT+CGG | - | chr1_2:5636807-5636826 | None:intergenic | 60.0% | |
| GATTTAACCGGGTGCGGGTG+CGG | + | chr1_2:5636806-5636825 | Msa0051530:intron | 60.0% | |
| ATTTAACCGGGTGCGGGTGC+GGG | + | chr1_2:5636807-5636826 | Msa0051530:intron | 60.0% | |
| TAAAAAAGCGGGTGCGGGGC+GGG | - | chr1_2:5636886-5636905 | None:intergenic | 60.0% | |
| TCCAATGGGGACGGATCTCC+TGG | - | chr1_2:5637146-5637165 | None:intergenic | 60.0% | |
| AGGAGATCCGTCCCCATTGG+AGG | + | chr1_2:5637145-5637164 | Msa0051530:intron | 60.0% | |
| AGATCCGTCCCCATTGGAGG+CGG | + | chr1_2:5637148-5637167 | Msa0051530:intron | 60.0% | |
| GCCTGGACAACCAAAAGGGG+TGG | + | chr1_2:5638141-5638160 | Msa0051530:CDS | 60.0% | |
| GAGGTGTGTCCTTGGGCGGA+TGG | + | chr1_2:5635274-5635293 | Msa0051530:intron | 65.0% | |
| CGCCCCCGCCCCGAATTTAA+CGG | + | chr1_2:5636774-5636793 | Msa0051530:intron | 65.0% | |
| GCCCCCGCCCCGAATTTAAC+GGG | + | chr1_2:5636775-5636794 | Msa0051530:intron | 65.0% | |
| CCCCGTTAAATTCGGGGCGG+GGG | - | chr1_2:5636779-5636798 | None:intergenic | 65.0% | |
| CCCCCGCCCCGAATTTAACG+GGG | + | chr1_2:5636776-5636795 | Msa0051530:intron | 65.0% | |
| AAAAAAGCGGGTGCGGGGCG+GGG | - | chr1_2:5636885-5636904 | None:intergenic | 65.0% | |
| GCCAGGAGATCCGTCCCCAT+TGG | + | chr1_2:5637142-5637161 | Msa0051530:intron | 65.0% | |
| GATCCGTCCCCATTGGAGGC+GGG | + | chr1_2:5637149-5637168 | Msa0051530:intron | 65.0% | |
| ATCCGTCCCCATTGGAGGCG+GGG | + | chr1_2:5637150-5637169 | Msa0051530:intron | 65.0% | |
| AACCCCGCCTCCAATGGGGA+CGG | - | chr1_2:5637155-5637174 | None:intergenic | 65.0% | |
| TCCCCATTGGAGGCGGGGTT+GGG | + | chr1_2:5637155-5637174 | Msa0051530:intron | 65.0% | |
| ACCCAACCCCGCCTCCAATG+GGG | - | chr1_2:5637159-5637178 | None:intergenic | 65.0% | |
| CACCCAACCCCGCCTCCAAT+GGG | - | chr1_2:5637160-5637179 | None:intergenic | 65.0% | |
| ACACCCAACCCCGCCTCCAA+TGG | - | chr1_2:5637161-5637180 | None:intergenic | 65.0% | |
| TTTGGGAACGGGGGCGGATG+CGG | + | chr1_2:5637203-5637222 | Msa0051530:intron | 65.0% | |
| CGGATGCGGGTGCATGGAAG+CGG | + | chr1_2:5637217-5637236 | Msa0051530:intron | 65.0% | |
| GGATGCGGGTGCATGGAAGC+GGG | + | chr1_2:5637218-5637237 | Msa0051530:intron | 65.0% | |
| CGGGTGCATGGAAGCGGGTA+CGG | + | chr1_2:5637223-5637242 | Msa0051530:intron | 65.0% | |
| GGGTGCATGGAAGCGGGTAC+GGG | + | chr1_2:5637224-5637243 | Msa0051530:intron | 65.0% | |
| GGTGCATGGAAGCGGGTACG+GGG | + | chr1_2:5637225-5637244 | Msa0051530:intron | 65.0% | |
| CATGGAAGCGGGTACGGGGA+CGG | + | chr1_2:5637229-5637248 | Msa0051530:intron | 65.0% | |
| ATGGAAGCGGGTACGGGGAC+GGG | + | chr1_2:5637230-5637249 | Msa0051530:intron | 65.0% | |
| ACATGGCAACGGGGCGGATC+GGG | - | chr1_2:5637272-5637291 | None:intergenic | 65.0% | |
| GACATGGCAACGGGGCGGAT+CGG | - | chr1_2:5637273-5637292 | None:intergenic | 65.0% | |
| TTGGCTGGGCCATCCGCCCA+AGG | - | chr1_2:5635286-5635305 | None:intergenic | 70.0% | |
| TAAGCCACCCCCGCCAGACC+CGG | + | chr1_2:5636750-5636769 | Msa0051530:intron | 70.0% | |
| AAATTCGGGGCGGGGGCGAC+CGG | - | chr1_2:5636772-5636791 | None:intergenic | 70.0% | |
| AATCCACCCGCACCCGCACC+CGG | - | chr1_2:5636816-5636835 | None:intergenic | 70.0% | |
| ! | GGTGCGGGTGCGGGTGGATT+TGG | + | chr1_2:5636816-5636835 | Msa0051530:intron | 70.0% |
| GGGCGGGTGTAAGCATCCCC+TGG | - | chr1_2:5636853-5636872 | None:intergenic | 70.0% | |
| AAAAAGCGGGTGCGGGGCGG+GGG | - | chr1_2:5636884-5636903 | None:intergenic | 70.0% | |
| TTTCGAGGGTGGGGTGGGGG+CGG | + | chr1_2:5637118-5637137 | Msa0051530:intron | 70.0% | |
| GTCCCCATTGGAGGCGGGGT+TGG | + | chr1_2:5637154-5637173 | Msa0051530:intron | 70.0% | |
| TTGGGAACGGGGGCGGATGC+GGG | + | chr1_2:5637204-5637223 | Msa0051530:intron | 70.0% | |
| TGGAAGCGGGTACGGGGACG+GGG | + | chr1_2:5637231-5637250 | Msa0051530:intron | 70.0% | |
| ATGGCAACGGGGCGGATCGG+GGG | - | chr1_2:5637270-5637289 | None:intergenic | 70.0% | |
| CATGGCAACGGGGCGGATCG+GGG | - | chr1_2:5637271-5637290 | None:intergenic | 70.0% | |
| AATTCGGGGCGGGGGCGACC+GGG | - | chr1_2:5636771-5636790 | None:intergenic | 75.0% | |
| TAACCGGGTGCGGGTGCGGG+TGG | + | chr1_2:5636810-5636829 | Msa0051530:intron | 75.0% | |
| TTCGAGGGTGGGGTGGGGGC+GGG | + | chr1_2:5637119-5637138 | Msa0051530:intron | 75.0% | |
| ! | TCGAGGGTGGGGTGGGGGCG+GGG | + | chr1_2:5637120-5637139 | Msa0051530:intron | 80.0% |
| ! | CGGGGGCGGATGCGGGTGCA+TGG | + | chr1_2:5637211-5637230 | Msa0051530:intron | 80.0% |
| ! | CAACGGGGCGGATCGGGGGC+GGG | - | chr1_2:5637266-5637285 | None:intergenic | 80.0% |
| ! | GCAACGGGGCGGATCGGGGG+CGG | - | chr1_2:5637267-5637286 | None:intergenic | 80.0% |
| ! | GCGACCGGGTCTGGCGGGGG+TGG | - | chr1_2:5636757-5636776 | None:intergenic | 85.0% |
| ! | GGGGCGACCGGGTCTGGCGG+GGG | - | chr1_2:5636760-5636779 | None:intergenic | 85.0% |
| ! | GGGGGCGACCGGGTCTGGCG+GGG | - | chr1_2:5636761-5636780 | None:intergenic | 85.0% |
| ! | CGGGGGCGACCGGGTCTGGC+GGG | - | chr1_2:5636762-5636781 | None:intergenic | 85.0% |
| ! | GCGGGGGCGACCGGGTCTGG+CGG | - | chr1_2:5636763-5636782 | None:intergenic | 85.0% |
| ! | TGCGGGGCGGGGGTGGGTGC+GGG | - | chr1_2:5636874-5636893 | None:intergenic | 85.0% |
| ! | GTGCGGGGCGGGGGTGGGTG+CGG | - | chr1_2:5636875-5636894 | None:intergenic | 85.0% |
| ! | AGCGGGTGCGGGGCGGGGGT+GGG | - | chr1_2:5636880-5636899 | None:intergenic | 85.0% |
| ! | AAGCGGGTGCGGGGCGGGGG+TGG | - | chr1_2:5636881-5636900 | None:intergenic | 85.0% |
| ! | GGGGCGGGGGCGACCGGGTC+TGG | - | chr1_2:5636766-5636785 | None:intergenic | 90.0% |
| ! | GGCGGGGGTGGGTGCGGGGC+GGG | - | chr1_2:5636869-5636888 | None:intergenic | 90.0% |
| ! | GGGCGGGGGTGGGTGCGGGG+CGG | - | chr1_2:5636870-5636889 | None:intergenic | 90.0% |
| ! | GCGGGGCGGGGGTGGGTGCG+GGG | - | chr1_2:5636873-5636892 | None:intergenic | 90.0% |
| ! | GGTGGGGTGGGGGCGGGGCC+AGG | + | chr1_2:5637125-5637144 | Msa0051530:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 5633593 | 5638294 | 5633593 | ID=Msa0051530;Name=Msa0051530 |
| chr1_2 | mRNA | 5633593 | 5638294 | 5633593 | ID=Msa0051530-mRNA-1;Parent=Msa0051530;Name=Msa0051530-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|0.5|1|1|2|0|118 |
| chr1_2 | exon | 5633593 | 5633596 | 5633593 | ID=Msa0051530-mRNA-1:exon:1736;Parent=Msa0051530-mRNA-1 |
| chr1_2 | exon | 5637942 | 5638294 | 5637942 | ID=Msa0051530-mRNA-1:exon:1737;Parent=Msa0051530-mRNA-1 |
| chr1_2 | CDS | 5633593 | 5633596 | 5633593 | ID=Msa0051530-mRNA-1:cds;Parent=Msa0051530-mRNA-1 |
| chr1_2 | CDS | 5637942 | 5638294 | 5637942 | ID=Msa0051530-mRNA-1:cds;Parent=Msa0051530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
