AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0344980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344980 MtrunA17_Chr3g0136441 94.915 118 6 0 25 142 1 118 6.94e-82 236
Msa0344980 MtrunA17_Chr1g0150711 53.509 114 46 2 36 142 17 130 8.14e-36 120
Msa0344980 MtrunA17_Chr8g0344381 55.208 96 41 1 32 125 27 122 5.57e-34 116
Msa0344980 MtrunA17_Chr4g0070351 47.107 121 62 1 11 129 6 126 2.80e-32 111
Msa0344980 MtrunA17_Chr4g0070371 46.957 115 55 3 29 139 18 130 1.12e-27 100
Msa0344980 MtrunA17_Chr5g0394601 47.297 74 38 1 34 106 1 74 2.38e-22 85.5
Msa0344980 MtrunA17_Chr2g0331111 46.429 84 44 1 13 96 40 122 5.25e-21 84.3
Msa0344980 MtrunA17_Chr8g0340421 57.143 63 26 1 35 97 62 123 1.93e-20 82.8
Msa0344980 MtrunA17_Chr3g0140381 36.111 108 68 1 35 141 36 143 1.59e-19 79.3
Msa0344980 MtrunA17_Chr1g0205251 45.946 74 38 2 34 105 1 74 2.08e-19 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344980 AT1G72510.1 56.701 97 40 1 35 129 33 129 4.83e-34 117
Msa0344980 AT1G72510.2 56.701 97 40 1 35 129 33 129 4.83e-34 117
Msa0344980 AT2G09970.1 48.980 98 47 2 35 129 33 130 3.29e-27 99.8
Msa0344980 AT5G20670.1 47.959 98 46 3 36 130 23 118 4.93e-23 88.6
Msa0344980 AT1G54095.1 45.714 105 52 3 24 125 5 107 1.10e-21 85.1
Msa0344980 AT4G14819.1 36.697 109 62 3 34 142 1 102 7.14e-19 76.6
Msa0344980 AT3G22540.1 38.462 91 51 3 34 123 1 87 1.28e-17 73.6
Msa0344980 AT1G79770.1 45.263 95 44 3 34 124 50 140 2.31e-15 69.3
Msa0344980 AT5G25840.1 42.353 85 40 2 31 106 38 122 2.90e-13 63.9
Msa0344980 AT2G25780.1 38.202 89 51 3 39 124 39 126 2.76e-12 60.8

Find 34 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCAACCGTGGGTTTATT+AGG 0.262331 3_1:+3993110 None:intergenic
CTCCATCGTCGCCGCGGTTT+CGG 0.297193 3_1:+3993343 None:intergenic
CTTGAGAGGAACACATTTCA+TGG 0.321122 3_1:+3995993 None:intergenic
TTTCAAAGCTTCTTCTTTCA+CGG 0.372656 3_1:+3993205 None:intergenic
TACCTGGGTCGTTGGATTTG+TGG 0.383506 3_1:-3993242 Msa0344980:CDS
ACCTGGGTCGTTGGATTTGT+GGG 0.391134 3_1:-3993241 Msa0344980:CDS
GTGCTACTGTTGCGGCTTAA+CGG 0.404880 3_1:-3993306 Msa0344980:CDS
TTATTTGTTCAGTGAGAAGT+AGG 0.430635 3_1:-3993382 Msa0344980:intron
AAACTCAAAGGTTGTTTCCT+CGG 0.484002 3_1:+3993044 None:intergenic
CCATGTTCGTGAGAAATACC+TGG 0.494919 3_1:-3993258 Msa0344980:CDS
GCCGCAACAGTAGCACTTCA+CGG 0.509628 3_1:+3993313 None:intergenic
AATGTTTACGGTGTCAATCT+CGG 0.513620 3_1:-3995958 Msa0344980:intron
GTGAGAAATACCTGGGTCGT+TGG 0.543743 3_1:-3993250 Msa0344980:CDS
TATTTGTTCAGTGAGAAGTA+GGG 0.544560 3_1:-3993381 Msa0344980:intron
GTGTTGATTAAGAGCTTCAT+CGG 0.550067 3_1:+3993163 None:intergenic
AACCGCGGCGACGATGGAGG+TGG 0.571492 3_1:-3993339 Msa0344980:CDS
AACCGAAACCGCGGCGACGA+TGG 0.582114 3_1:-3993345 Msa0344980:CDS
TCAACCGTGGGTTTATTAGG+AGG 0.587396 3_1:+3993113 None:intergenic
TTTGAGCATGAAAACTTGAG+AGG 0.610252 3_1:+3995979 None:intergenic
CCAGGTATTTCTCACGAACA+TGG 0.611108 3_1:+3993258 None:intergenic
TTCGGTCTTTGGATTCTCCG+AGG 0.613420 3_1:-3993061 Msa0344980:CDS
CGAAACCGCGGCGACGATGG+AGG 0.615356 3_1:-3993342 Msa0344980:CDS
AGCAAGAATCAAATCAACCG+TGG 0.629275 3_1:+3993100 None:intergenic
GCCCACAAATCCAACGACCC+AGG 0.634250 3_1:+3993240 None:intergenic
CCAACCGTTCGAAAACTCAA+AGG 0.637318 3_1:+3993032 None:intergenic
CATGTTCGTGAGAAATACCT+GGG 0.642264 3_1:-3993257 Msa0344980:CDS
GCAAGAATCAAATCAACCGT+GGG 0.653690 3_1:+3993101 None:intergenic
GATTTGTGGGCTATGTGCAG+AGG 0.661005 3_1:-3993228 Msa0344980:CDS
GCCGTGAAGTGCTACTGTTG+CGG 0.673482 3_1:-3993314 Msa0344980:CDS
AAGTCCTCCTAATAAACCCA+CGG 0.676099 3_1:-3993117 Msa0344980:CDS
CTACTGTTGCGGCTTAACGG+AGG 0.677501 3_1:-3993303 Msa0344980:CDS
TACCACCTCCATCGTCGCCG+CGG 0.680469 3_1:+3993337 None:intergenic
GATGGCTTTAACCGAAACCG+CGG 0.711918 3_1:-3993354 Msa0344980:CDS
CGAACATGGTCAATATACGA+CGG 0.745897 3_1:+3993272 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATAATTCCTATTTTTA+TGG + chr3_1:3993247-3993266 None:intergenic 10.0%
!! ATAAAAATAGGAATTATAAT+AGG - chr3_1:3993246-3993265 Msa0344980:CDS 10.0%
!! CAAAAAAATATGTTAAAAAT+TGG + chr3_1:3993879-3993898 None:intergenic 10.0%
!! CAAAAAATAATGTTAAAAAT+TGG + chr3_1:3994193-3994212 None:intergenic 10.0%
!! TATAAATATATACTAATCTT+TGG - chr3_1:3995571-3995590 Msa0344980:intron 10.0%
!!! ATTGAATTAGTTTCTTTATT+TGG - chr3_1:3993560-3993579 Msa0344980:intron 15.0%
!!! TTTTTTCTATTAAAAACTAG+CGG - chr3_1:3993626-3993645 Msa0344980:intron 15.0%
!!! GTTACTAATATTTTTATCAA+AGG - chr3_1:3993844-3993863 Msa0344980:intron 15.0%
!!! TTGTTACTAATTTTTATTAG+AGG - chr3_1:3993935-3993954 Msa0344980:intron 15.0%
!!! TGTTACTAATATTTTTTTAG+AGG - chr3_1:3994061-3994080 Msa0344980:intron 15.0%
!!! TTTAAAATTAAGGGTATTTT+TGG - chr3_1:3994950-3994969 Msa0344980:intron 15.0%
!!! ATGTTCATCTTTTTATATTT+TGG + chr3_1:3995151-3995170 None:intergenic 15.0%
!!! CATCTTTTTTCTAAATACTT+TGG + chr3_1:3993195-3993214 None:intergenic 20.0%
!! TTTAACACTATAATATTCCT+AGG - chr3_1:3993219-3993238 Msa0344980:CDS 20.0%
!!! AAAAATTTTCCCAAAGAAAA+GGG + chr3_1:3993319-3993338 None:intergenic 20.0%
!!! AAGTTTAGTAAATTTTTTCC+CGG + chr3_1:3993365-3993384 None:intergenic 20.0%
!! ATGTTGAGTTCATAAATAAT+TGG + chr3_1:3993809-3993828 None:intergenic 20.0%
!!! TGTTACTAATCTTTTTTTAG+AGG - chr3_1:3993998-3994017 Msa0344980:intron 20.0%
!! CAAAAGATATTGTTAAAGAT+TGG + chr3_1:3994033-3994052 None:intergenic 20.0%
!! TTTGTTAGCACTATATTAAA+TGG + chr3_1:3994096-3994115 None:intergenic 20.0%
!!! GTTACTAATATTTTTATCAG+AGG - chr3_1:3994160-3994179 Msa0344980:intron 20.0%
!!! TGTTACTAATCTTTTATTAG+AGG - chr3_1:3994254-3994273 Msa0344980:intron 20.0%
!!! TGTTACTAATCATTTTTTAG+AGG - chr3_1:3994317-3994336 Msa0344980:intron 20.0%
!!! TGTTACTAATCTTTTTTTAG+AGG - chr3_1:3993998-3994017 Msa0344980:intron 20.0%
!! TTCAATTATAAAATAACACG+TGG + chr3_1:3994922-3994941 None:intergenic 20.0%
!!! TTAATTTTTTTTTCTCCTAG+TGG - chr3_1:3995080-3995099 Msa0344980:intron 20.0%
!! GGTTAAATATAACTAATCTT+TGG - chr3_1:3995592-3995611 Msa0344980:intron 20.0%
!! TTTTCATGCTCAAATGTTTA+CGG - chr3_1:3993037-3993056 Msa0344980:CDS 25.0%
! ATTATTCCTAGGAATGAATT+TGG + chr3_1:3993140-3993159 None:intergenic 25.0%
!! GAAAAATTTTCCCAAAGAAA+AGG + chr3_1:3993320-3993339 None:intergenic 25.0%
!!! AGTTTAGTAAATTTTTTCCC+GGG + chr3_1:3993364-3993383 None:intergenic 25.0%
! ACTAAACTTGTAACAAACAT+AGG - chr3_1:3993376-3993395 Msa0344980:intron 25.0%
! AGTTATATTTGTAGATTCGT+GGG + chr3_1:3993426-3993445 None:intergenic 25.0%
! AAGTTATATTTGTAGATTCG+TGG + chr3_1:3993427-3993446 None:intergenic 25.0%
! CAGAAAACATTGTTAAAGAT+TGG + chr3_1:3994352-3994371 None:intergenic 25.0%
! TCAGAATTTGAGAAAATCAA+AGG + chr3_1:3994544-3994563 None:intergenic 25.0%
! AAGATATTCAATTCATGAAG+TGG - chr3_1:3994652-3994671 Msa0344980:intron 25.0%
! CAATGAATGGAATATCTTTA+AGG + chr3_1:3994679-3994698 None:intergenic 25.0%
! CTTAAAGATATTCCATTCAT+TGG - chr3_1:3994677-3994696 Msa0344980:intron 25.0%
! TAAAAAATTAGAAAGTCCCA+AGG + chr3_1:3994733-3994752 None:intergenic 25.0%
!! AGATGTACTATGATGAATTT+TGG - chr3_1:3994762-3994781 Msa0344980:intron 25.0%
! CAACAAAACCACAAATAATA+AGG + chr3_1:3995351-3995370 None:intergenic 25.0%
!!! TTATTTGTGGTTTTGTTGTT+TGG - chr3_1:3995353-3995372 Msa0344980:intron 25.0%
! TAATTTACTGTATCAAGCAA+TGG + chr3_1:3995453-3995472 None:intergenic 25.0%
!! GAAAAACAATTCTAGTTCCT+TGG - chr3_1:3993095-3993114 Msa0344980:CDS 30.0%
AGTTTACCAAATTCATTCCT+AGG - chr3_1:3993131-3993150 Msa0344980:CDS 30.0%
TTCCTAGGAATAATATTCCT+TGG - chr3_1:3993146-3993165 Msa0344980:CDS 30.0%
TTCCAAGGAATATTATTCCT+AGG + chr3_1:3993151-3993170 None:intergenic 30.0%
TATTCCTTGGAACATAAAGA+TGG - chr3_1:3993159-3993178 Msa0344980:CDS 30.0%
ATTTCCATCTTTATGTTCCA+AGG + chr3_1:3993166-3993185 None:intergenic 30.0%
TTCCTAGGAACCATAAAAAT+AGG - chr3_1:3993234-3993253 Msa0344980:CDS 30.0%
!!! TTCCTATTTTTATGGTTCCT+AGG + chr3_1:3993239-3993258 None:intergenic 30.0%
ATTAAAAACTAGCGGAAAGA+CGG - chr3_1:3993634-3993653 Msa0344980:intron 30.0%
ATTTATAGTCCAATCCTCAT+CGG - chr3_1:3994403-3994422 Msa0344980:intron 30.0%
AACAAAAATAATAGCCGATG+AGG + chr3_1:3994420-3994439 None:intergenic 30.0%
AGAGTTGTGAAAAATAAAGC+AGG - chr3_1:3994463-3994482 Msa0344980:intron 30.0%
GCAGGAAAAAACATAAACTT+TGG - chr3_1:3994481-3994500 Msa0344980:intron 30.0%
CAAAGCTTGAATTGTAATGT+TGG - chr3_1:3994597-3994616 Msa0344980:intron 30.0%
!!! GGGACTTTCTAATTTTTTAG+AGG - chr3_1:3994734-3994753 Msa0344980:intron 30.0%
TAATCTCAAAGAGCCAATTA+AGG - chr3_1:3995308-3995327 Msa0344980:intron 30.0%
TTATTTGTTCAGTGAGAAGT+AGG - chr3_1:3995625-3995644 Msa0344980:intron 30.0%
TATTTGTTCAGTGAGAAGTA+GGG - chr3_1:3995626-3995645 Msa0344980:intron 30.0%
TTTCAAAGCTTCTTCTTTCA+CGG + chr3_1:3995805-3995824 None:intergenic 30.0%
! CTGTGAAACATCTTCTTTTT+CGG - chr3_1:3995928-3995947 Msa0344980:intron 30.0%
TTTGAGCATGAAAACTTGAG+AGG + chr3_1:3993031-3993050 None:intergenic 35.0%
! AATGTTTACGGTGTCAATCT+CGG - chr3_1:3993049-3993068 Msa0344980:CDS 35.0%
AACTTGAAACAAACACACCA+AGG + chr3_1:3993115-3993134 None:intergenic 35.0%
! TTTATTCCCACCCTTTTCTT+TGG - chr3_1:3993306-3993325 Msa0344980:CDS 35.0%
! TTATTCCCACCCTTTTCTTT+GGG - chr3_1:3993307-3993326 Msa0344980:CDS 35.0%
! ATTTTCCCAAAGAAAAGGGT+GGG + chr3_1:3993315-3993334 None:intergenic 35.0%
! AATTTTCCCAAAGAAAAGGG+TGG + chr3_1:3993316-3993335 None:intergenic 35.0%
! GGGAAAATTTTTCTATTCCC+AGG - chr3_1:3993327-3993346 Msa0344980:CDS 35.0%
TTAAAAACTAGCGGAAAGAC+GGG - chr3_1:3993635-3993654 Msa0344980:intron 35.0%
AAATAATAGCCGATGAGGAT+TGG + chr3_1:3994415-3994434 None:intergenic 35.0%
AGCTTGAATTGTAATGTTGG+CGG - chr3_1:3994600-3994619 Msa0344980:intron 35.0%
AATGTTGGCGGAAAGTAAAT+TGG - chr3_1:3994612-3994631 Msa0344980:intron 35.0%
TTAATCAAGTTCTTGAGCCT+TGG - chr3_1:3994713-3994732 Msa0344980:intron 35.0%
TAATCAAGTTCTTGAGCCTT+GGG - chr3_1:3994714-3994733 Msa0344980:intron 35.0%
! CTTTTTGTGAGTTTGATCTG+TGG - chr3_1:3994838-3994857 Msa0344980:intron 35.0%
TGAGTTTGATCTGTGGTTAA+CGG - chr3_1:3994845-3994864 Msa0344980:intron 35.0%
CCACTTATTCACTTGAATTC+TGG + chr3_1:3995106-3995125 None:intergenic 35.0%
CCAGAATTCAAGTGAATAAG+TGG - chr3_1:3995103-3995122 Msa0344980:intron 35.0%
TGTGTGTATGTTATCATGCA+CGG + chr3_1:3995190-3995209 None:intergenic 35.0%
!! CACACAACTTTAGTTCTTTG+TGG - chr3_1:3995204-3995223 Msa0344980:intron 35.0%
!! AACTTTAGTTCTTTGTGGTC+CGG - chr3_1:3995209-3995228 Msa0344980:intron 35.0%
ATTGCACACAAAATTAGCAG+AGG + chr3_1:3995271-3995290 None:intergenic 35.0%
GTACATTTCTGAGCCTTAAT+TGG + chr3_1:3995324-3995343 None:intergenic 35.0%
GTACTGCACCTTATTATTTG+TGG - chr3_1:3995340-3995359 Msa0344980:intron 35.0%
!!! TTTGTGGTTTTGTTGTTTGG+CGG - chr3_1:3995356-3995375 Msa0344980:intron 35.0%
!! TCAAGCAATGGTATTGATTC+TGG + chr3_1:3995441-3995460 None:intergenic 35.0%
!! GTGTTGATTAAGAGCTTCAT+CGG + chr3_1:3995847-3995866 None:intergenic 35.0%
AAATCAACCGTGGGTTTATT+AGG + chr3_1:3995900-3995919 None:intergenic 35.0%
!!! ACATCTTCTTTTTCGGTCTT+TGG - chr3_1:3995935-3995954 Msa0344980:intron 35.0%
! AAACTCAAAGGTTGTTTCCT+CGG + chr3_1:3995966-3995985 None:intergenic 35.0%
!! ACAACCTTTGAGTTTTCGAA+CGG - chr3_1:3995971-3995990 Msa0344980:CDS 35.0%
TGAATTTATTCCCATCTCCG+TGG - chr3_1:3993279-3993298 Msa0344980:CDS 40.0%
GAATTTATTCCCATCTCCGT+GGG - chr3_1:3993280-3993299 Msa0344980:CDS 40.0%
AATAAAGTTCCCACGGAGAT+GGG + chr3_1:3993292-3993311 None:intergenic 40.0%
!! ACTTCTGAAGCACCAATGAA+TGG + chr3_1:3994692-3994711 None:intergenic 40.0%
TGGTTAACGGTGGTAAAAGA+AGG - chr3_1:3994858-3994877 Msa0344980:intron 40.0%
! AACCCAAAAGTGTGCTGAAA+GGG - chr3_1:3994985-3995004 Msa0344980:intron 40.0%
! TTTTGGCACAATTCGAACCT+CGG + chr3_1:3995134-3995153 None:intergenic 40.0%
!! TCGTTTGAGCTTTGTTCTTC+CGG + chr3_1:3995231-3995250 None:intergenic 40.0%
AGAAGGAGCGATAATTACTC+AGG - chr3_1:3995393-3995412 Msa0344980:intron 40.0%
!! AGTGAGAAGTAGGGTTTTGA+TGG - chr3_1:3995635-3995654 Msa0344980:intron 40.0%
CGAACATGGTCAATATACGA+CGG + chr3_1:3995738-3995757 None:intergenic 40.0%
CATGTTCGTGAGAAATACCT+GGG - chr3_1:3995750-3995769 Msa0344980:intron 40.0%
AAGTCCTCCTAATAAACCCA+CGG - chr3_1:3995890-3995909 Msa0344980:intron 40.0%
GCAAGAATCAAATCAACCGT+GGG + chr3_1:3995909-3995928 None:intergenic 40.0%
AGCAAGAATCAAATCAACCG+TGG + chr3_1:3995910-3995929 None:intergenic 40.0%
GAATAAAGTTCCCACGGAGA+TGG + chr3_1:3993293-3993312 None:intergenic 45.0%
! TCCCAGGAACGTTTTATACC+CGG - chr3_1:3993343-3993362 Msa0344980:CDS 45.0%
GCGGAAAGTAAATTGGTCGA+AGG - chr3_1:3994619-3994638 Msa0344980:intron 45.0%
GTTTGATCTGTGGTTAACGG+TGG - chr3_1:3994848-3994867 Msa0344980:intron 45.0%
! CAACCCAAAAGTGTGCTGAA+AGG - chr3_1:3994984-3995003 Msa0344980:intron 45.0%
! ACCCAAAAGTGTGCTGAAAG+GGG - chr3_1:3994986-3995005 Msa0344980:intron 45.0%
! ACCCCTTTCAGCACACTTTT+GGG + chr3_1:3994990-3995009 None:intergenic 45.0%
! TACCCCTTTCAGCACACTTT+TGG + chr3_1:3994991-3995010 None:intergenic 45.0%
TCACTTGAATTCTGGCCACT+AGG + chr3_1:3995098-3995117 None:intergenic 45.0%
GTGAATAAGTGGTGTATCCG+AGG - chr3_1:3995114-3995133 Msa0344980:intron 45.0%
TGTTATCATGCACGGTGCAA+TGG + chr3_1:3995182-3995201 None:intergenic 45.0%
TGTTTGGCGGCGAAATTAAG+TGG - chr3_1:3995369-3995388 Msa0344980:intron 45.0%
GTTTGGCGGCGAAATTAAGT+GGG - chr3_1:3995370-3995389 Msa0344980:intron 45.0%
CCAGGTATTTCTCACGAACA+TGG + chr3_1:3995752-3995771 None:intergenic 45.0%
CCATGTTCGTGAGAAATACC+TGG - chr3_1:3995749-3995768 Msa0344980:intron 45.0%
TCAACCGTGGGTTTATTAGG+AGG + chr3_1:3995897-3995916 None:intergenic 45.0%
CCAACCGTTCGAAAACTCAA+AGG + chr3_1:3995978-3995997 None:intergenic 45.0%
!! CCTTTGAGTTTTCGAACGGT+TGG - chr3_1:3995975-3995994 Msa0344980:CDS 45.0%
!!! AATATTTGTATTTAAAATTA+AGG - chr3_1:3994940-3994959 Msa0344980:intron 5.0%
!!! ATATTTGTATTTAAAATTAA+GGG - chr3_1:3994941-3994960 Msa0344980:intron 5.0%
! CGGTGTCAATCTCGGTAAGT+TGG - chr3_1:3993057-3993076 Msa0344980:CDS 50.0%
GGGTGGGAATAAAGTTCCCA+CGG + chr3_1:3993299-3993318 None:intergenic 50.0%
CCCGGGTATAAAACGTTCCT+GGG + chr3_1:3993347-3993366 None:intergenic 50.0%
! CCCAGGAACGTTTTATACCC+GGG - chr3_1:3993344-3993363 Msa0344980:CDS 50.0%
TCCCGGGTATAAAACGTTCC+TGG + chr3_1:3993348-3993367 None:intergenic 50.0%
AGTAGAAAGAGCGGACAGAC+GGG + chr3_1:3993671-3993690 None:intergenic 50.0%
CAGTAGAAAGAGCGGACAGA+CGG + chr3_1:3993672-3993691 None:intergenic 50.0%
CGTTAGCGCAGTAGAAAGAG+CGG + chr3_1:3993680-3993699 None:intergenic 50.0%
CGGCGAAATTAAGTGGGAGA+AGG - chr3_1:3995376-3995395 Msa0344980:intron 50.0%
!! GATGGCTTTAACCGAAACCG+CGG - chr3_1:3995653-3995672 Msa0344980:intron 50.0%
! GTGCTACTGTTGCGGCTTAA+CGG - chr3_1:3995701-3995720 Msa0344980:intron 50.0%
GTGAGAAATACCTGGGTCGT+TGG - chr3_1:3995757-3995776 Msa0344980:intron 50.0%
TACCTGGGTCGTTGGATTTG+TGG - chr3_1:3995765-3995784 Msa0344980:intron 50.0%
ACCTGGGTCGTTGGATTTGT+GGG - chr3_1:3995766-3995785 Msa0344980:intron 50.0%
! GATTTGTGGGCTATGTGCAG+AGG - chr3_1:3995779-3995798 Msa0344980:intron 50.0%
TTCGGTCTTTGGATTCTCCG+AGG - chr3_1:3995946-3995965 Msa0344980:intron 50.0%
! GCCGTGAAGTGCTACTGTTG+CGG - chr3_1:3995693-3995712 Msa0344980:intron 55.0%
GCCGCAACAGTAGCACTTCA+CGG + chr3_1:3995697-3995716 None:intergenic 55.0%
CTACTGTTGCGGCTTAACGG+AGG - chr3_1:3995704-3995723 Msa0344980:intron 55.0%
GCCCACAAATCCAACGACCC+AGG + chr3_1:3995770-3995789 None:intergenic 60.0%
AACCGAAACCGCGGCGACGA+TGG - chr3_1:3995662-3995681 Msa0344980:intron 65.0%
CTCCATCGTCGCCGCGGTTT+CGG + chr3_1:3995667-3995686 None:intergenic 65.0%
TACCACCTCCATCGTCGCCG+CGG + chr3_1:3995673-3995692 None:intergenic 65.0%
CGAAACCGCGGCGACGATGG+AGG - chr3_1:3995665-3995684 Msa0344980:intron 70.0%
AACCGCGGCGACGATGGAGG+TGG - chr3_1:3995668-3995687 Msa0344980:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 3993016 3996013 3993016 ID=Msa0344980;Name=Msa0344980
chr3_1 mRNA 3993016 3996013 3993016 ID=Msa0344980-mRNA-1;Parent=Msa0344980;Name=Msa0344980-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|0.5|1|1|2|0|143
chr3_1 exon 3995959 3996013 3995959 ID=Msa0344980-mRNA-1:exon:1335;Parent=Msa0344980-mRNA-1
chr3_1 exon 3993016 3993392 3993016 ID=Msa0344980-mRNA-1:exon:1334;Parent=Msa0344980-mRNA-1
chr3_1 CDS 3995959 3996013 3995959 ID=Msa0344980-mRNA-1:cds;Parent=Msa0344980-mRNA-1
chr3_1 CDS 3993016 3993392 3993016 ID=Msa0344980-mRNA-1:cds;Parent=Msa0344980-mRNA-1
Gene Sequence

>Msa0344980

ATGAAATGTGTTCCTCTCAAGTTTTCATGCTCAAATGTTTACGGTGTCAATCTCGTGAGAAGTAGGGTTTTGATGGCTTTAACCGAAACCGCGGCGACGATGGAGGTGGTAGCCGTGAAGTGCTACTGTTGCGGCTTAACGGAGGAGTGCACTCCGTCGTATATTGACCATGTTCGTGAGAAATACCTGGGTCGTTGGATTTGTGGGCTATGTGCAGAGGCCGTGAAAGAAGAAGCTTTGAAATCGAAAAGAGATATTAGCACCGATGAAGCTCTTAATCAACACATGAATTTCAGAACTTTAACATCAAGTCCTCCTAATAAACCCACGGTTGATTTGATTCTTGCTGTGAAACATCTTCTTTTTCGGTCTTTGGATTCTCCGAGGAAACAACCTTTGAGTTTTCGAACGGTTGGTAGATCGCATAGATAA

Protein sequence

>Msa0344980

MKCVPLKFSCSNVYGVNLVRSRVLMALTETAATMEVVAVKCYCCGLTEECTPSYIDHVREKYLGRWICGLCAEAVKEEALKSKRDISTDEALNQHMNFRTLTSSPPNKPTVDLILAVKHLLFRSLDSPRKQPLSFRTVGRSHR*