Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052310 | XP_003589174.2 | 90.401 | 698 | 47 | 4 | 1 | 695 | 1 | 681 | 0.0 | 1254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052310 | sp|Q923W1|TGS1_MOUSE | 53.125 | 192 | 69 | 4 | 498 | 685 | 636 | 810 | 7.50e-58 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052310 | A0A396JQF6 | 90.401 | 698 | 47 | 4 | 1 | 695 | 1 | 681 | 0.0 | 1254 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026710 | Msa0052310 | 0.838115 | 3.482750e-57 | -8.615850e-47 |
| Msa0052310 | Msa1451940 | 0.990626 | 1.552632e-183 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052310 | MtrunA17_Chr1g0153291 | 90.401 | 698 | 47 | 4 | 1 | 695 | 1 | 681 | 0.0 | 1254 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0052310 | AT1G45231.2 | 56.538 | 260 | 92 | 2 | 462 | 721 | 290 | 528 | 5.75e-95 | 305 |
| Msa0052310 | AT1G30550.1 | 50.235 | 213 | 84 | 3 | 498 | 710 | 19 | 209 | 1.89e-69 | 227 |
| Msa0052310 | AT1G30550.2 | 47.619 | 231 | 99 | 3 | 480 | 710 | 19 | 227 | 5.50e-69 | 226 |
| Msa0052310 | AT1G30545.2 | 50.235 | 213 | 84 | 3 | 498 | 710 | 31 | 221 | 2.40e-68 | 224 |
| Msa0052310 | AT1G30545.1 | 46.087 | 115 | 56 | 2 | 596 | 710 | 2 | 110 | 1.51e-32 | 122 |
Find 188 sgRNAs with CRISPR-Local
Find 648 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTCTCCCTCTTTCCTTTC+AGG | 0.117881 | 1_2:+6532484 | Msa0052310:CDS |
| ATACAGATTGTGAGACTATT+TGG | 0.181236 | 1_2:+6534147 | Msa0052310:CDS |
| TCAATTGATTGTGGTGAATT+TGG | 0.197179 | 1_2:+6534266 | Msa0052310:CDS |
| CGTCTTGGCACCAAAGTTAA+AGG | 0.213662 | 1_2:+6536937 | Msa0052310:CDS |
| AAATTCGGTGTTCAGGAAAA+TGG | 0.223587 | 1_2:+6541474 | Msa0052310:intron |
| TGGAGTCGCTGCTGGAAATT+TGG | 0.230378 | 1_2:+6534541 | Msa0052310:CDS |
| GTGTTATGGGATACTTTCTA+TGG | 0.231393 | 1_2:+6534299 | Msa0052310:CDS |
| TCAAATACTTGAGTCTTTCT+TGG | 0.262751 | 1_2:+6536718 | Msa0052310:CDS |
| TATAACCGATAAGATAGTTT+AGG | 0.272524 | 1_2:-6531922 | None:intergenic |
| TGTCACCAGCACCTGTTAAA+TGG | 0.276417 | 1_2:-6534055 | None:intergenic |
| CTACTCACCGTTGTGCAAAT+TGG | 0.278895 | 1_2:-6535598 | None:intergenic |
| TAGGCATGACATTGTTATAT+TGG | 0.292633 | 1_2:+6536695 | Msa0052310:intron |
| GAGCAAACAAATGAATGAAT+TGG | 0.294987 | 1_2:+6532463 | Msa0052310:CDS |
| TAAGATCAAAGTCACGGTTC+TGG | 0.303686 | 1_2:-6533992 | None:intergenic |
| TTGGAGATTGGATGGTGTTA+TGG | 0.306890 | 1_2:+6534285 | Msa0052310:CDS |
| AGAATCACTTCCCATGAGTT+TGG | 0.319721 | 1_2:+6534214 | Msa0052310:CDS |
| TGGTTGAAGTTGACATTTCT+TGG | 0.332160 | 1_2:-6539052 | None:intergenic |
| ATTGCACATGCCTCAGATAC+TGG | 0.337936 | 1_2:+6534017 | Msa0052310:CDS |
| TCAGATTTACTATCCAATTC+AGG | 0.343225 | 1_2:-6534937 | None:intergenic |
| TCGTCTACCAAGGTTTCTTC+AGG | 0.344527 | 1_2:-6534476 | None:intergenic |
| AGGGCTGATGAAGGTTAATA+AGG | 0.354816 | 1_2:-6531902 | None:intergenic |
| ATAACCGATAAGATAGTTTA+GGG | 0.358427 | 1_2:-6531921 | None:intergenic |
| TCAGCCCTAAACTATCTTAT+CGG | 0.360963 | 1_2:+6531917 | Msa0052310:five_prime_UTR |
| AACTTTAGCACCTTTAACTT+TGG | 0.367248 | 1_2:-6536947 | None:intergenic |
| TGTCTTCCTATCTCCACCTT+GGG | 0.368653 | 1_2:+6538245 | Msa0052310:CDS |
| TCATTTAGAGTTTCATCAAC+AGG | 0.375630 | 1_2:-6533732 | None:intergenic |
| TAGAAATGTGGACCAGTAAA+AGG | 0.376722 | 1_2:+6533663 | Msa0052310:intron |
| ATTGTTGCAGAATAAGCTTC+AGG | 0.377435 | 1_2:-6535401 | None:intergenic |
| GGTAATTGATACGCCTGAAT+TGG | 0.379166 | 1_2:+6534924 | Msa0052310:CDS |
| GGCGGCAATGTTTGCTTGGT+TGG | 0.381307 | 1_2:+6541522 | Msa0052310:CDS |
| TGGAGATTGGATGGTGTTAT+GGG | 0.383342 | 1_2:+6534286 | Msa0052310:CDS |
| TGAAGCTCTAAAGTCATTAG+AGG | 0.391197 | 1_2:+6534424 | Msa0052310:CDS |
| AAGATCAAAGTCACGGTTCT+GGG | 0.395925 | 1_2:-6533991 | None:intergenic |
| ATTATCTTGTATATCAATGC+TGG | 0.397234 | 1_2:+6533812 | Msa0052310:CDS |
| GCCGGAGACCGTAGTCAATA+TGG | 0.402820 | 1_2:+6532025 | Msa0052310:exon |
| GTCGCAACCTTGGCATAATC+TGG | 0.408300 | 1_2:-6538273 | None:intergenic |
| GCTGAGATTGGAGTCGCTGC+TGG | 0.424048 | 1_2:+6534533 | Msa0052310:CDS |
| CAAGGTTTGTGGGATAGAAC+TGG | 0.427058 | 1_2:+6534076 | Msa0052310:CDS |
| GATCAAATTGACTTCATAGT+TGG | 0.427835 | 1_2:+6536905 | Msa0052310:CDS |
| AGCAAACAAATGAATGAATT+GGG | 0.428976 | 1_2:+6532464 | Msa0052310:CDS |
| AATACCTAACGACGTGATCC+AGG | 0.429384 | 1_2:-6534673 | None:intergenic |
| ATCAATTAGCGAATCAATGA+AGG | 0.432023 | 1_2:-6541597 | None:intergenic |
| TAAAAGAAAGCGGCGCGCTC+CGG | 0.433840 | 1_2:+6531989 | Msa0052310:five_prime_UTR |
| TCTGCTGGAAGCCATTTAAC+AGG | 0.439865 | 1_2:+6534044 | Msa0052310:CDS |
| TATACTATTAATCCTTTCCT+CGG | 0.441008 | 1_2:-6533946 | None:intergenic |
| CTTCGGAAGATGGTTGAACT+TGG | 0.443338 | 1_2:-6532251 | None:intergenic |
| GCCATATTGACTACGGTCTC+CGG | 0.443709 | 1_2:-6532026 | None:intergenic |
| TTGGTAGACGAGAACTTATC+AGG | 0.445848 | 1_2:+6534488 | Msa0052310:CDS |
| TGCTGCACTGGGTTTGCTAA+TGG | 0.446709 | 1_2:+6533918 | Msa0052310:CDS |
| GATTCATCAAACCTCATTCC+TGG | 0.447006 | 1_2:+6532294 | Msa0052310:CDS |
| ATTGTGGTGAATTTGGAGAT+TGG | 0.448835 | 1_2:+6534273 | Msa0052310:CDS |
| ATGTCACCCAAGTCTTTCTC+TGG | 0.455587 | 1_2:+6532105 | Msa0052310:CDS |
| GACTGTTTCACCGGCGCTGG+TGG | 0.456267 | 1_2:+6535566 | Msa0052310:CDS |
| TCTACATGGGACCCACCCTC+AGG | 0.459782 | 1_2:+6534356 | Msa0052310:CDS |
| GTTGCATATGACAGAGTTGA+TGG | 0.460248 | 1_2:+6534242 | Msa0052310:CDS |
| AGTGATTCTGATTCGTTAGC+TGG | 0.461287 | 1_2:-6534200 | None:intergenic |
| AAATGTCAACTTCAACCAAT+TGG | 0.461325 | 1_2:+6539057 | Msa0052310:CDS |
| GGGATGGAGTATCTAGCATT+TGG | 0.461901 | 1_2:+6534377 | Msa0052310:CDS |
| GAAGAGTATTCAGCTGAGAT+TGG | 0.463111 | 1_2:+6534521 | Msa0052310:CDS |
| GATAATTCAACATGCTGCAC+TGG | 0.465684 | 1_2:+6533906 | Msa0052310:CDS |
| CTTTGGCGGCAATGTTTGCT+TGG | 0.467714 | 1_2:+6541518 | Msa0052310:CDS |
| TCCGGCTACCTCTCTCAAAC+CGG | 0.469747 | 1_2:-6532008 | None:intergenic |
| TTGTGATCAGCTTCGGAAGA+TGG | 0.482811 | 1_2:-6532261 | None:intergenic |
| TTCTTTGCCTGAAAGGAAAG+AGG | 0.484021 | 1_2:-6532491 | None:intergenic |
| TGATAATGTGCAATAATCTC+TGG | 0.484400 | 1_2:-6535512 | None:intergenic |
| ACTTGAGTCTTTCTTGGAGA+AGG | 0.486119 | 1_2:+6536724 | Msa0052310:CDS |
| ATACCCTGGATCACGTCGTT+AGG | 0.486600 | 1_2:+6534669 | Msa0052310:CDS |
| TTATTCTCTAGATTTGATGA+TGG | 0.486790 | 1_2:+6535452 | Msa0052310:CDS |
| TCAGATACTGGAATCTCTGC+TGG | 0.487274 | 1_2:+6534029 | Msa0052310:CDS |
| AGTTGGTGACTTCTTCGTCT+TGG | 0.487348 | 1_2:+6536922 | Msa0052310:CDS |
| ACAGTAATTGACTGTTTCAC+CGG | 0.491412 | 1_2:+6535557 | Msa0052310:CDS |
| ATATTGCAGCAGGGATACTT+TGG | 0.492621 | 1_2:+6541501 | Msa0052310:CDS |
| TGCAACCCCTTCCAAACTCA+TGG | 0.493145 | 1_2:-6534225 | None:intergenic |
| GTCCACCCCAAGGTGGAGAT+AGG | 0.493310 | 1_2:-6538251 | None:intergenic |
| TTTGCTCAATTCCAAATCCT+CGG | 0.493464 | 1_2:-6532447 | None:intergenic |
| ATTGTTGTTGTGATCAGCTT+CGG | 0.497624 | 1_2:-6532268 | None:intergenic |
| AAATGGATGGATATTGCAGC+AGG | 0.500907 | 1_2:+6541491 | Msa0052310:CDS |
| TTCCTTTCAGGCAAAGAATG+AGG | 0.501644 | 1_2:+6532496 | Msa0052310:CDS |
| TACCTCATTCTTTGCCTGAA+AGG | 0.504941 | 1_2:-6532498 | None:intergenic |
| TACTCTGTTCAGTGTTGCTA+AGG | 0.505931 | 1_2:+6539000 | Msa0052310:CDS |
| CATCTGAATGATGAAGAGAT+TGG | 0.506548 | 1_2:-6534592 | None:intergenic |
| ATTGACTGTTTCACCGGCGC+TGG | 0.506856 | 1_2:+6535563 | Msa0052310:CDS |
| ATAGAGATAACTCTGCCAAT+TGG | 0.508750 | 1_2:-6539072 | None:intergenic |
| CTGTCTTCCTATCTCCACCT+TGG | 0.509970 | 1_2:+6538244 | Msa0052310:CDS |
| CTAATGGTGTTTCCGAGGAA+AGG | 0.515247 | 1_2:+6533934 | Msa0052310:CDS |
| TGAAGTTGACATTTCTTGGA+AGG | 0.517744 | 1_2:-6539048 | None:intergenic |
| CACTTCCCATGAGTTTGGAA+GGG | 0.519103 | 1_2:+6534219 | Msa0052310:CDS |
| CTAGCATAATCAATCTTCAA+TGG | 0.520724 | 1_2:-6536854 | None:intergenic |
| TGAGAAGATTCAATCCAGTC+TGG | 0.523383 | 1_2:-6541561 | None:intergenic |
| AGATAGTTTAGGGCTGATGA+AGG | 0.527378 | 1_2:-6531911 | None:intergenic |
| TGGAAGGAACATGACAACTC+TGG | 0.528426 | 1_2:-6539032 | None:intergenic |
| TTATCTTGTATATCAATGCT+GGG | 0.528772 | 1_2:+6533813 | Msa0052310:CDS |
| TTGCTCAATTCCAAATCCTC+GGG | 0.531412 | 1_2:-6532446 | None:intergenic |
| GCTGCAAGTACGTGGCTGCT+TGG | 0.531513 | 1_2:-6533706 | None:intergenic |
| TTCCTATCTCCACCTTGGGG+TGG | 0.532270 | 1_2:+6538249 | Msa0052310:CDS |
| AGATACTCCATCCCTGAGGG+TGG | 0.532294 | 1_2:-6534368 | None:intergenic |
| TTGCAGCAGGGATACTTTGG+CGG | 0.533591 | 1_2:+6541504 | Msa0052310:CDS |
| TCACTTCCCATGAGTTTGGA+AGG | 0.534280 | 1_2:+6534218 | Msa0052310:CDS |
| ACTTCCCATGAGTTTGGAAG+GGG | 0.538055 | 1_2:+6534220 | Msa0052310:CDS |
| CACAGTAGGATGATTCACTT+TGG | 0.539774 | 1_2:-6533836 | None:intergenic |
| GGAAGCCATTTAACAGGTGC+TGG | 0.541054 | 1_2:+6534050 | Msa0052310:CDS |
| TCAAAACAGACACTTCTACA+TGG | 0.541812 | 1_2:+6534342 | Msa0052310:CDS |
| ACTGTTTCACCGGCGCTGGT+GGG | 0.542352 | 1_2:+6535567 | Msa0052310:CDS |
| TGGTGAATTTGGAGATTGGA+TGG | 0.548165 | 1_2:+6534277 | Msa0052310:CDS |
| TGGAGTATCTAGCATTTGGT+GGG | 0.549362 | 1_2:+6534381 | Msa0052310:CDS |
| ATGGAGTATCTAGCATTTGG+TGG | 0.551877 | 1_2:+6534380 | Msa0052310:CDS |
| GACATGGCTCAATCTGTCCC+TGG | 0.553310 | 1_2:+6533876 | Msa0052310:CDS |
| GCTAGATTTATAAAAGAAAG+CGG | 0.553632 | 1_2:+6531979 | Msa0052310:five_prime_UTR |
| CAATGCTTAGACCGCATGAT+GGG | 0.554402 | 1_2:+6538310 | Msa0052310:CDS |
| CTCAAGTGCTAGAACCAGAC+TGG | 0.555040 | 1_2:+6541547 | Msa0052310:CDS |
| AATAGCGGCGCCTTCATAGT+CGG | 0.558541 | 1_2:-6532060 | None:intergenic |
| AGAAGCACTCGCCAGGAATG+AGG | 0.559235 | 1_2:-6532305 | None:intergenic |
| TATCAAGCATCACGTTGTGC+AGG | 0.561730 | 1_2:+6535530 | Msa0052310:CDS |
| ATAATTCAACATGCTGCACT+GGG | 0.561985 | 1_2:+6533907 | Msa0052310:CDS |
| CAAACAACCTGAAGAAACCT+TGG | 0.563559 | 1_2:+6534469 | Msa0052310:CDS |
| CATTGAAGATTGATTATGCT+AGG | 0.564121 | 1_2:+6536855 | Msa0052310:CDS |
| GCTCAATCTGTCCCTGGTGA+AGG | 0.564856 | 1_2:+6533882 | Msa0052310:CDS |
| ACGACGATGGTGCTGCCACT+TGG | 0.565157 | 1_2:+6534171 | Msa0052310:CDS |
| GGTGCTGGTGACAAGGTTTG+TGG | 0.565223 | 1_2:+6534065 | Msa0052310:CDS |
| CATATCATAAGTCGCAACCT+TGG | 0.565614 | 1_2:-6538283 | None:intergenic |
| TTTAACAGGTGCTGGTGACA+AGG | 0.566075 | 1_2:+6534058 | Msa0052310:CDS |
| GATGGCATTCCCACCAGCGC+CGG | 0.573122 | 1_2:-6535576 | None:intergenic |
| CTCTATCTGCCTCTCCACCA+TGG | 0.573558 | 1_2:+6539089 | Msa0052310:CDS |
| GGCGCCGCTATTCAATCTCT+CGG | 0.575015 | 1_2:+6532071 | Msa0052310:CDS |
| GTGCTGGTGACAAGGTTTGT+GGG | 0.579936 | 1_2:+6534066 | Msa0052310:CDS |
| CATTTAGAGTTTCATCAACA+GGG | 0.579943 | 1_2:-6533731 | None:intergenic |
| GATGAAGGTTAATAAGGAGT+AGG | 0.580853 | 1_2:-6531896 | None:intergenic |
| CTGTTCTGTATCAAATACCC+TGG | 0.582745 | 1_2:+6534655 | Msa0052310:CDS |
| GTTGAATTATCTCCTTCACC+AGG | 0.585632 | 1_2:-6533894 | None:intergenic |
| TCTTTGCCTGAAAGGAAAGA+GGG | 0.587850 | 1_2:-6532490 | None:intergenic |
| ATGGGACCCACCCTCAGGGA+TGG | 0.588910 | 1_2:+6534361 | Msa0052310:CDS |
| CAAAACAGACACTTCTACAT+GGG | 0.589849 | 1_2:+6534343 | Msa0052310:CDS |
| GATACTCCATCCCTGAGGGT+GGG | 0.590428 | 1_2:-6534367 | None:intergenic |
| TCGGTGTTCAGGAAAATGGA+TGG | 0.591426 | 1_2:+6541478 | Msa0052310:intron |
| CTCTAGCGACCATGGTGGAG+AGG | 0.591857 | 1_2:-6539098 | None:intergenic |
| CTCTCCACCATGGTCGCTAG+AGG | 0.592850 | 1_2:+6539099 | Msa0052310:CDS |
| TGTTATGGGATACTTTCTAT+GGG | 0.593869 | 1_2:+6534300 | Msa0052310:CDS |
| GCATAATCTGGTCCACCCCA+AGG | 0.596449 | 1_2:-6538261 | None:intergenic |
| TCATACACCAACGGAAAACA+TGG | 0.596879 | 1_2:+6534903 | Msa0052310:CDS |
| CAAGCATCACGTTGTGCAGG+TGG | 0.596897 | 1_2:+6535533 | Msa0052310:CDS |
| GAAATTACCTCTAGCGACCA+TGG | 0.600107 | 1_2:-6539106 | None:intergenic |
| TAGTTACCAGAGAAAGACTT+GGG | 0.602158 | 1_2:-6532111 | None:intergenic |
| TCACCGTTGTGCAAATTGGA+TGG | 0.602384 | 1_2:-6535594 | None:intergenic |
| ATACCTAACGACGTGATCCA+GGG | 0.603439 | 1_2:-6534672 | None:intergenic |
| AAATGAAGTGAGTGCAGAGG+AGG | 0.606828 | 1_2:+6533749 | Msa0052310:CDS |
| AGCAGAGATTCCAGTATCTG+AGG | 0.607282 | 1_2:-6534027 | None:intergenic |
| GCTAGATACTCCATCCCTGA+GGG | 0.607652 | 1_2:-6534371 | None:intergenic |
| TCCGGTTTGAGAGAGGTAGC+CGG | 0.608768 | 1_2:+6532007 | Msa0052310:five_prime_UTR |
| ATCCTACTGTGATGGTGCAG+CGG | 0.609489 | 1_2:+6533848 | Msa0052310:CDS |
| ATCACCGACTCCGACTATGA+AGG | 0.610202 | 1_2:+6532050 | Msa0052310:CDS |
| ACAATGCTTAGACCGCATGA+TGG | 0.611631 | 1_2:+6538309 | Msa0052310:CDS |
| GCAACCCCTTCCAAACTCAT+GGG | 0.614097 | 1_2:-6534224 | None:intergenic |
| TAATGCTGCTATTTATCGAG+TGG | 0.614197 | 1_2:+6536880 | Msa0052310:CDS |
| CTACATGGGACCCACCCTCA+GGG | 0.614401 | 1_2:+6534357 | Msa0052310:CDS |
| GTTTGCTAATGGTGTTTCCG+AGG | 0.615324 | 1_2:+6533929 | Msa0052310:CDS |
| TGATAAGTTCTCGTCTACCA+AGG | 0.615470 | 1_2:-6534486 | None:intergenic |
| GGCGCGCTCCGGTTTGAGAG+AGG | 0.616944 | 1_2:+6532000 | Msa0052310:five_prime_UTR |
| CTTGAGAGAACTAGTTGCAA+CGG | 0.617983 | 1_2:+6534620 | Msa0052310:CDS |
| TGGTGCAGCGGAAGTTGACA+TGG | 0.618529 | 1_2:+6533860 | Msa0052310:CDS |
| AAATTATATTATGAAACTGA+AGG | 0.620563 | 1_2:+6535012 | Msa0052310:CDS |
| TTAGTTACCAGAGAAAGACT+TGG | 0.620694 | 1_2:-6532112 | None:intergenic |
| GGCGCCTTCATAGTCGGAGT+CGG | 0.622083 | 1_2:-6532054 | None:intergenic |
| AGAAAGTGAAAAGAAAACAC+AGG | 0.628636 | 1_2:+6534983 | Msa0052310:CDS |
| TCTATCTTGTCATAGAAATG+TGG | 0.633490 | 1_2:+6533651 | Msa0052310:intron |
| GTCTTCCTATCTCCACCTTG+GGG | 0.634884 | 1_2:+6538246 | Msa0052310:CDS |
| AAGGTTTGTGGGATAGAACT+GGG | 0.636682 | 1_2:+6534077 | Msa0052310:CDS |
| TTGCATATGACAGAGTTGAT+GGG | 0.643851 | 1_2:+6534243 | Msa0052310:CDS |
| GGGTGGACCAGATTATGCCA+AGG | 0.644458 | 1_2:+6538266 | Msa0052310:CDS |
| ATGTTACAGGTGCAGACATG+TGG | 0.644573 | 1_2:+6536814 | Msa0052310:intron |
| ACAGGGTTGCTGCAAGTACG+TGG | 0.644966 | 1_2:-6533714 | None:intergenic |
| GTTGATGGGTCAATTGATTG+TGG | 0.650295 | 1_2:+6534257 | Msa0052310:CDS |
| TCTAAATGAAGTGAGTGCAG+AGG | 0.654427 | 1_2:+6533746 | Msa0052310:CDS |
| AGTGAATCATCCTACTGTGA+TGG | 0.656530 | 1_2:+6533840 | Msa0052310:CDS |
| TTGAATTATCTCCTTCACCA+GGG | 0.659466 | 1_2:-6533893 | None:intergenic |
| GGTGATCGCCATATTGACTA+CGG | 0.659564 | 1_2:-6532033 | None:intergenic |
| TTCCGCTGCACCATCACAGT+AGG | 0.666655 | 1_2:-6533850 | None:intergenic |
| ATGCAGTCAAGCAACATCAG+AGG | 0.667380 | 1_2:+6534876 | Msa0052310:CDS |
| TGCTAGATACTCCATCCCTG+AGG | 0.677604 | 1_2:-6534372 | None:intergenic |
| ATGCCATCCAATTTGCACAA+CGG | 0.679134 | 1_2:+6535591 | Msa0052310:CDS |
| AGAGGTCGATCATACACCAA+CGG | 0.685453 | 1_2:+6534894 | Msa0052310:CDS |
| AAGTGAAAAGAAAACACAGG+CGG | 0.687466 | 1_2:+6534986 | Msa0052310:CDS |
| TAATCTGGTCCACCCCAAGG+TGG | 0.694203 | 1_2:-6538258 | None:intergenic |
| GCATCTACCTACCCATCATG+CGG | 0.705552 | 1_2:-6538321 | None:intergenic |
| GTTAGCTGGCGACTGCCAAG+TGG | 0.706012 | 1_2:-6534186 | None:intergenic |
| AATGGATGGATATTGCAGCA+GGG | 0.709139 | 1_2:+6541492 | Msa0052310:CDS |
| GAGACTATTTGGAACGACGA+TGG | 0.720881 | 1_2:+6534158 | Msa0052310:CDS |
| ATTACCTCTAGCGACCATGG+TGG | 0.725531 | 1_2:-6539103 | None:intergenic |
| AGAACCGAGAGATTGAATAG+CGG | 0.727660 | 1_2:-6532075 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTTTTGTAGTTTT+TGG | + | chr1_2:6536166-6536185 | Msa0052310:intron | 10.0% |
| !!! | TTGATTCTTTTTTTTTTTTT+TGG | + | chr1_2:6536764-6536783 | Msa0052310:intron | 10.0% |
| !!! | TATTTTGGATTTTTAAAAAT+AGG | + | chr1_2:6536990-6537009 | Msa0052310:intron | 10.0% |
| !!! | TATATGAAACAATATTTTAT+TGG | + | chr1_2:6537262-6537281 | Msa0052310:intron | 10.0% |
| !!! | ATATGAAACAATATTTTATT+GGG | + | chr1_2:6537263-6537282 | Msa0052310:intron | 10.0% |
| !!! | AACTTATTATATGTTTTATA+TGG | + | chr1_2:6539814-6539833 | Msa0052310:intron | 10.0% |
| !! | TAATAATTATTTCCTTAATA+AGG | - | chr1_2:6540784-6540803 | None:intergenic | 10.0% |
| !!! | TGTTTTATATTTTTGTAGAT+TGG | + | chr1_2:6532405-6532424 | Msa0052310:intron | 15.0% |
| !!! | TACTTTTCTTTTTTAAACTA+CGG | + | chr1_2:6533014-6533033 | Msa0052310:intron | 15.0% |
| !! | TGTCTAAATTATTACTATAA+AGG | + | chr1_2:6533284-6533303 | Msa0052310:intron | 15.0% |
| !! | GTCTAAATTATTACTATAAA+GGG | + | chr1_2:6533285-6533304 | Msa0052310:intron | 15.0% |
| !! | TCTAAATTATTACTATAAAG+GGG | + | chr1_2:6533286-6533305 | Msa0052310:intron | 15.0% |
| !! | CTATTATAAAACTATAACTA+TGG | - | chr1_2:6533512-6533531 | None:intergenic | 15.0% |
| !! | AAATTATATTATGAAACTGA+AGG | + | chr1_2:6535012-6535031 | Msa0052310:CDS | 15.0% |
| !! | AGACCAAAAAAATTAATATT+CGG | + | chr1_2:6535745-6535764 | Msa0052310:intron | 15.0% |
| !!! | TAACCGAATATTAATTTTTT+TGG | - | chr1_2:6535751-6535770 | None:intergenic | 15.0% |
| !! | AACTACAAAAAAAAATTACA+GGG | - | chr1_2:6536164-6536183 | None:intergenic | 15.0% |
| !! | AAACTACAAAAAAAAATTAC+AGG | - | chr1_2:6536165-6536184 | None:intergenic | 15.0% |
| !! | GATTTATATGAAATGAATAT+TGG | - | chr1_2:6536555-6536574 | None:intergenic | 15.0% |
| !!! | TATGAAACAATATTTTATTG+GGG | + | chr1_2:6537264-6537283 | Msa0052310:intron | 15.0% |
| !!! | TTATTTCTCCTATTTATATA+TGG | - | chr1_2:6537472-6537491 | None:intergenic | 15.0% |
| !! | TTAAATTTAATTAGAAGAGT+GGG | - | chr1_2:6538096-6538115 | None:intergenic | 15.0% |
| !! | TTTAAATTTAATTAGAAGAG+TGG | - | chr1_2:6538097-6538116 | None:intergenic | 15.0% |
| !! | AATTAAATTTACTTGTACTT+TGG | + | chr1_2:6538602-6538621 | Msa0052310:intron | 15.0% |
| !! | ATTAAATTTACTTGTACTTT+GGG | + | chr1_2:6538603-6538622 | Msa0052310:intron | 15.0% |
| !! | ATGTAAACAAAAAATGTATT+TGG | + | chr1_2:6539486-6539505 | Msa0052310:intron | 15.0% |
| !! | TAAATAAATAATATGACAGA+TGG | - | chr1_2:6540540-6540559 | None:intergenic | 15.0% |
| !! | CTATAAAATGTATTTGAATA+GGG | - | chr1_2:6540680-6540699 | None:intergenic | 15.0% |
| !!! | AATTTCAAGTATTAATTTCT+TGG | - | chr1_2:6541459-6541478 | None:intergenic | 15.0% |
| !! | AGAAATTAATACTTGAAATT+CGG | + | chr1_2:6541459-6541478 | Msa0052310:intron | 15.0% |
| !! | TTCTCTGATTAATTAATGAA+AGG | + | chr1_2:6532348-6532367 | Msa0052310:intron | 20.0% |
| !!! | GATTAATTAATGAAAGGTTT+TGG | + | chr1_2:6532354-6532373 | Msa0052310:intron | 20.0% |
| !!! | AGTGTAATTTGTATAACTAT+AGG | - | chr1_2:6532524-6532543 | None:intergenic | 20.0% |
| !! | TTCTACTATATCATAATATC+AGG | - | chr1_2:6532552-6532571 | None:intergenic | 20.0% |
| !! | TTATGATATAGTAGAAAGTT+AGG | + | chr1_2:6532556-6532575 | Msa0052310:intron | 20.0% |
| !! | CTAAATTATTACTATAAAGG+GGG | + | chr1_2:6533287-6533306 | Msa0052310:intron | 20.0% |
| !! | ATAACCTGAAAACAATTTAT+AGG | + | chr1_2:6533384-6533403 | Msa0052310:intron | 20.0% |
| !! | TCTTATATATATAAAGAGCA+GGG | - | chr1_2:6533595-6533614 | None:intergenic | 20.0% |
| !! | ATCTTATATATATAAAGAGC+AGG | - | chr1_2:6533596-6533615 | None:intergenic | 20.0% |
| !!! | TGAGATCAATGTTTTTTTAT+TGG | + | chr1_2:6535037-6535056 | Msa0052310:intron | 20.0% |
| !!! | TAATGAATCTTTAAGTTAAC+TGG | + | chr1_2:6535106-6535125 | Msa0052310:intron | 20.0% |
| !!! | TGATAAATTCATCTTGTTTT+TGG | + | chr1_2:6535649-6535668 | Msa0052310:intron | 20.0% |
| !! | AGAAACAGTAAATATATTCT+TGG | + | chr1_2:6535826-6535845 | Msa0052310:intron | 20.0% |
| !! | GAAACAGTAAATATATTCTT+GGG | + | chr1_2:6535827-6535846 | Msa0052310:intron | 20.0% |
| !! | GTATACATCAATATTAAATC+CGG | - | chr1_2:6536012-6536031 | None:intergenic | 20.0% |
| !! | AATTAAATTTGCAAATTACC+AGG | - | chr1_2:6536082-6536101 | None:intergenic | 20.0% |
| !! | TGCAAATTTAATTCTCATAA+AGG | + | chr1_2:6536089-6536108 | Msa0052310:intron | 20.0% |
| !!! | TTCAAAAACAATATTTTGCA+GGG | - | chr1_2:6536193-6536212 | None:intergenic | 20.0% |
| !!! | TTTCAAAAACAATATTTTGC+AGG | - | chr1_2:6536194-6536213 | None:intergenic | 20.0% |
| !!! | CCAAAAACAAAATATTTTAC+AGG | - | chr1_2:6536294-6536313 | None:intergenic | 20.0% |
| !!! | CCTGTAAAATATTTTGTTTT+TGG | + | chr1_2:6536291-6536310 | Msa0052310:intron | 20.0% |
| !!! | CAAAAACAAAATATTTTGCA+GGG | - | chr1_2:6536324-6536343 | None:intergenic | 20.0% |
| !!! | TCAAAAACAAAATATTTTGC+AGG | - | chr1_2:6536325-6536344 | None:intergenic | 20.0% |
| !! | ATTTATAAGAGGCTAAAATA+TGG | - | chr1_2:6536375-6536394 | None:intergenic | 20.0% |
| !! | ACATATATAAACTAAAGACA+AGG | - | chr1_2:6536499-6536518 | None:intergenic | 20.0% |
| !! | ATTACTAGACTAAAATAAAG+TGG | - | chr1_2:6536530-6536549 | None:intergenic | 20.0% |
| !! | TTTAAGAGAGATAATAAACA+GGG | - | chr1_2:6537191-6537210 | None:intergenic | 20.0% |
| !!! | TTTTAAGAGAGATAATAAAC+AGG | - | chr1_2:6537192-6537211 | None:intergenic | 20.0% |
| !!! | ATGAAACAATATTTTATTGG+GGG | + | chr1_2:6537265-6537284 | Msa0052310:intron | 20.0% |
| !! | TTATGAACTTATGATTATTC+AGG | + | chr1_2:6537422-6537441 | Msa0052310:intron | 20.0% |
| !! | TATGAACTTATGATTATTCA+GGG | + | chr1_2:6537423-6537442 | Msa0052310:intron | 20.0% |
| !! | TAAATTTAATTAGAAGAGTG+GGG | - | chr1_2:6538095-6538114 | None:intergenic | 20.0% |
| !!! | GATCAACTATTTTTCTTAAA+GGG | - | chr1_2:6538402-6538421 | None:intergenic | 20.0% |
| !!! | AGATCAACTATTTTTCTTAA+AGG | - | chr1_2:6538403-6538422 | None:intergenic | 20.0% |
| !!! | CAATAACCATTTTATTCTTA+GGG | - | chr1_2:6538518-6538537 | None:intergenic | 20.0% |
| !!! | TCAATAACCATTTTATTCTT+AGG | - | chr1_2:6538519-6538538 | None:intergenic | 20.0% |
| !! | AAATTAAGACCTTAATTAGT+TGG | + | chr1_2:6538539-6538558 | Msa0052310:intron | 20.0% |
| !! | AACTAGAAGATAAAATCAAA+AGG | - | chr1_2:6538684-6538703 | None:intergenic | 20.0% |
| !! | TTCATATTCAAATGTTAAGA+GGG | - | chr1_2:6539183-6539202 | None:intergenic | 20.0% |
| !! | ATTCATATTCAAATGTTAAG+AGG | - | chr1_2:6539184-6539203 | None:intergenic | 20.0% |
| !! | TCAGAAATAAAGTGAAAATA+AGG | + | chr1_2:6539440-6539459 | Msa0052310:intron | 20.0% |
| !! | TATACAATAAAACTCTTAGT+AGG | - | chr1_2:6539602-6539621 | None:intergenic | 20.0% |
| !!! | TGATTTTATGTGAAGTATAT+TGG | + | chr1_2:6539782-6539801 | Msa0052310:intron | 20.0% |
| !!! | AGATTTTTAAGTTATTCTTC+TGG | + | chr1_2:6540062-6540081 | Msa0052310:intron | 20.0% |
| !!! | TTTCATTGATTACTGAAAAA+CGG | + | chr1_2:6540177-6540196 | Msa0052310:intron | 20.0% |
| !!! | TACTTTTAATTTCATGAATG+TGG | + | chr1_2:6540638-6540657 | Msa0052310:intron | 20.0% |
| !! | GCTATAAAATGTATTTGAAT+AGG | - | chr1_2:6540681-6540700 | None:intergenic | 20.0% |
| !! | TGAAAGTAATTAATAGTAGT+GGG | - | chr1_2:6541000-6541019 | None:intergenic | 20.0% |
| !! | TTGAAAGTAATTAATAGTAG+TGG | - | chr1_2:6541001-6541020 | None:intergenic | 20.0% |
| ! | ATAACCGATAAGATAGTTTA+GGG | - | chr1_2:6531924-6531943 | None:intergenic | 25.0% |
| ! | TATAACCGATAAGATAGTTT+AGG | - | chr1_2:6531925-6531944 | None:intergenic | 25.0% |
| ! | GCTAGATTTATAAAAGAAAG+CGG | + | chr1_2:6531979-6531998 | Msa0052310:five_prime_UTR | 25.0% |
| ! | TGTAAAAAAGAAGGGTAAAA+AGG | - | chr1_2:6532218-6532237 | None:intergenic | 25.0% |
| !!! | TTTTTACCCTTCTTTTTTAC+AGG | + | chr1_2:6532217-6532236 | Msa0052310:intron | 25.0% |
| !!! | TTTTACCCTTCTTTTTTACA+GGG | + | chr1_2:6532218-6532237 | Msa0052310:intron | 25.0% |
| !!! | AAAGGTTTTGGATATTGAAA+GGG | + | chr1_2:6532366-6532385 | Msa0052310:intron | 25.0% |
| ! | AGCAAACAAATGAATGAATT+GGG | + | chr1_2:6532464-6532483 | Msa0052310:CDS | 25.0% |
| ! | GAATCAATTTAGTGTATGTT+TGG | + | chr1_2:6532626-6532645 | Msa0052310:intron | 25.0% |
| ! | AATTTAGTGTATGTTTGGAT+TGG | + | chr1_2:6532631-6532650 | Msa0052310:intron | 25.0% |
| ! | ACTTGAGTAAAATATGCATT+TGG | - | chr1_2:6532931-6532950 | None:intergenic | 25.0% |
| ! | TTAATTAAGCACTTGTGTAT+AGG | + | chr1_2:6533326-6533345 | Msa0052310:intron | 25.0% |
| !! | TAAGCCTATAAATTGTTTTC+AGG | - | chr1_2:6533391-6533410 | None:intergenic | 25.0% |
| ! | AAGCTTATAAAAATAACCTG+AGG | - | chr1_2:6533416-6533435 | None:intergenic | 25.0% |
| !! | AAAACTATAACTATGGCTTT+TGG | - | chr1_2:6533505-6533524 | None:intergenic | 25.0% |
| ! | GTATAAATGATAGAAGAGAA+GGG | - | chr1_2:6533573-6533592 | None:intergenic | 25.0% |
| ! | ATTATCTTGTATATCAATGC+TGG | + | chr1_2:6533812-6533831 | Msa0052310:CDS | 25.0% |
| ! | TTATCTTGTATATCAATGCT+GGG | + | chr1_2:6533813-6533832 | Msa0052310:CDS | 25.0% |
| ! | TATACTATTAATCCTTTCCT+CGG | - | chr1_2:6533949-6533968 | None:intergenic | 25.0% |
| !!! | CAATTTTAAGATCAAAGTCA+CGG | - | chr1_2:6534001-6534020 | None:intergenic | 25.0% |
| !!! | TCTGTATTTTTGAAAACAGA+TGG | - | chr1_2:6534134-6534153 | None:intergenic | 25.0% |
| ! | AGAGCAGATAAATATACATT+AGG | - | chr1_2:6534820-6534839 | None:intergenic | 25.0% |
| !!! | TGCAAAACATGTAATTTGTT+AGG | - | chr1_2:6534843-6534862 | None:intergenic | 25.0% |
| ! | AGAAAATATTGTCATAGACT+TGG | - | chr1_2:6535134-6535153 | None:intergenic | 25.0% |
| !! | GTCTATGACAATATTTTCTA+AGG | + | chr1_2:6535135-6535154 | Msa0052310:intron | 25.0% |
| ! | TAGTTAAATAGCTAGAATAC+TGG | + | chr1_2:6535213-6535232 | Msa0052310:intron | 25.0% |
| ! | ATTAATATCTAGCGTTACAT+TGG | - | chr1_2:6535273-6535292 | None:intergenic | 25.0% |
| ! | ATGAAAAATGTCCAATACAA+TGG | - | chr1_2:6535354-6535373 | None:intergenic | 25.0% |
| !! | ATTTTTCATTTTGCAGATCT+CGG | + | chr1_2:6535365-6535384 | Msa0052310:intron | 25.0% |
| ! | CTGCAACAATTGAAAAATAT+TGG | + | chr1_2:6535414-6535433 | Msa0052310:CDS | 25.0% |
| ! | TTATTCTCTAGATTTGATGA+TGG | + | chr1_2:6535452-6535471 | Msa0052310:CDS | 25.0% |
| !!! | ATTTGATGATGGTGTAAAAA+TGG | + | chr1_2:6535463-6535482 | Msa0052310:CDS | 25.0% |
| !!! | ACATCAATTATTTCTGAGTT+TGG | - | chr1_2:6535715-6535734 | None:intergenic | 25.0% |
| !! | GAAATAATTGATGTTTTCGT+AGG | + | chr1_2:6535721-6535740 | Msa0052310:intron | 25.0% |
| ! | TTAAGATTAATCTGTGCTTA+TGG | + | chr1_2:6535772-6535791 | Msa0052310:intron | 25.0% |
| !!! | TAATCTCAATGGATTGTTTA+TGG | + | chr1_2:6535960-6535979 | Msa0052310:intron | 25.0% |
| !!! | AATGTTTTTGTTTCACTCAA+TGG | + | chr1_2:6536032-6536051 | Msa0052310:intron | 25.0% |
| ! | TTCTCATAAAGGCTAAAATA+TGG | + | chr1_2:6536100-6536119 | Msa0052310:intron | 25.0% |
| !! | TAAAGGCTAAAATATGGTTT+TGG | + | chr1_2:6536106-6536125 | Msa0052310:intron | 25.0% |
| !!! | GGAACTTTTTTCTACAAAAT+GGG | - | chr1_2:6536273-6536292 | None:intergenic | 25.0% |
| !!! | AGGAACTTTTTTCTACAAAA+TGG | - | chr1_2:6536274-6536293 | None:intergenic | 25.0% |
| ! | TATATAAACTAAAGACAAGG+AGG | - | chr1_2:6536496-6536515 | None:intergenic | 25.0% |
| !! | TGATGACTAATCTAATTTGT+AGG | + | chr1_2:6536676-6536695 | Msa0052310:intron | 25.0% |
| ! | TTGATTCTATTTGATGTTAC+AGG | + | chr1_2:6536801-6536820 | Msa0052310:intron | 25.0% |
| !!! | ACAGAATCATTTGATTTTCA+AGG | - | chr1_2:6537217-6537236 | None:intergenic | 25.0% |
| ! | TCATCTAGAAATAAACAGTA+CGG | - | chr1_2:6537327-6537346 | None:intergenic | 25.0% |
| ! | GATTTCAGATATGTTATGTT+TGG | + | chr1_2:6537372-6537391 | Msa0052310:intron | 25.0% |
| ! | ATAGGAGAAATAAGAATGAA+AGG | + | chr1_2:6537479-6537498 | Msa0052310:intron | 25.0% |
| ! | AAGAATGAAAGGAATAGTTA+TGG | + | chr1_2:6537490-6537509 | Msa0052310:intron | 25.0% |
| ! | GAGAATATAATTCTTCACAA+AGG | - | chr1_2:6537546-6537565 | None:intergenic | 25.0% |
| ! | TTCTTTCATTTCAATTTCTC+TGG | + | chr1_2:6537611-6537630 | Msa0052310:intron | 25.0% |
| ! | GTCATAGAAAGAATAATTGA+TGG | - | chr1_2:6537650-6537669 | None:intergenic | 25.0% |
| !! | CAGTATTTCTAACTAAACTT+TGG | + | chr1_2:6537778-6537797 | Msa0052310:intron | 25.0% |
| ! | TTATGAAGAATGGGAAATAA+TGG | - | chr1_2:6537985-6538004 | None:intergenic | 25.0% |
| ! | CATAAGCTATTATGAAGAAT+GGG | - | chr1_2:6537994-6538013 | None:intergenic | 25.0% |
| !! | AATAGCTTATGCTTTTAGTA+TGG | + | chr1_2:6538003-6538022 | Msa0052310:intron | 25.0% |
| !!! | CATCAATATTTTGGACATAT+AGG | - | chr1_2:6538144-6538163 | None:intergenic | 25.0% |
| !! | AACGACTTTCATCAATATTT+TGG | - | chr1_2:6538153-6538172 | None:intergenic | 25.0% |
| !! | AATATTGATGAAAGTCGTTT+TGG | + | chr1_2:6538154-6538173 | Msa0052310:intron | 25.0% |
| !!! | ATATTGATGAAAGTCGTTTT+GGG | + | chr1_2:6538155-6538174 | Msa0052310:intron | 25.0% |
| !! | TATCAACTGTATTTTCTTTC+AGG | + | chr1_2:6538215-6538234 | Msa0052310:intron | 25.0% |
| ! | ATTATCCAAATTGTCCTTTA+TGG | + | chr1_2:6538483-6538502 | Msa0052310:intron | 25.0% |
| ! | TTATCCAAATTGTCCTTTAT+GGG | + | chr1_2:6538484-6538503 | Msa0052310:intron | 25.0% |
| ! | TTTGTTCCCTAAGAATAAAA+TGG | + | chr1_2:6538509-6538528 | Msa0052310:intron | 25.0% |
| ! | AGTATATACTACTGAGATAA+AGG | + | chr1_2:6539243-6539262 | Msa0052310:intron | 25.0% |
| ! | ACAAAATAAAAACAAGGTCA+TGG | - | chr1_2:6539303-6539322 | None:intergenic | 25.0% |
| ! | CAGGAAACAAAATAAAAACA+AGG | - | chr1_2:6539309-6539328 | None:intergenic | 25.0% |
| !!! | AGAAACATTTTACTGTTTCT+TGG | + | chr1_2:6539401-6539420 | Msa0052310:intron | 25.0% |
| ! | CAAAATGATATTAAGACTAG+TGG | - | chr1_2:6539524-6539543 | None:intergenic | 25.0% |
| !!! | TATCATTTTGTTTCATCAAC+TGG | + | chr1_2:6539534-6539553 | Msa0052310:intron | 25.0% |
| !!! | TTTTAGTTGTAACACCTTTA+AGG | - | chr1_2:6539662-6539681 | None:intergenic | 25.0% |
| ! | TGACATAGATGTAAAATAGA+AGG | + | chr1_2:6539684-6539703 | Msa0052310:intron | 25.0% |
| ! | ATAGATGTAAAATAGAAGGA+CGG | + | chr1_2:6539688-6539707 | Msa0052310:intron | 25.0% |
| ! | ACTTCACATAAAATCACTAA+AGG | - | chr1_2:6539778-6539797 | None:intergenic | 25.0% |
| !!! | CATAACTTCATTATTTTGGT+TGG | + | chr1_2:6539840-6539859 | Msa0052310:intron | 25.0% |
| ! | GATAGAAGAGTTAATTTACT+AGG | - | chr1_2:6539876-6539895 | None:intergenic | 25.0% |
| ! | GTAAATTAACTCTTCTATCA+TGG | + | chr1_2:6539877-6539896 | Msa0052310:intron | 25.0% |
| ! | GTGGAGAAAATTCATTTAAA+TGG | + | chr1_2:6539906-6539925 | Msa0052310:intron | 25.0% |
| !! | AAATTAAAAGTATGCTTGGA+TGG | - | chr1_2:6540630-6540649 | None:intergenic | 25.0% |
| !! | CATGAAATTAAAAGTATGCT+TGG | - | chr1_2:6540634-6540653 | None:intergenic | 25.0% |
| ! | TGAACACAATTTCCTTATTA+AGG | + | chr1_2:6540769-6540788 | Msa0052310:intron | 25.0% |
| !! | AGATACATAAAAGTATGTAG+TGG | + | chr1_2:6540955-6540974 | Msa0052310:intron | 25.0% |
| !! | GATACATAAAAGTATGTAGT+GGG | + | chr1_2:6540956-6540975 | Msa0052310:intron | 25.0% |
| !!! | GAAAGGTTTTGGATATTGAA+AGG | + | chr1_2:6532365-6532384 | Msa0052310:intron | 30.0% |
| GAGCAAACAAATGAATGAAT+TGG | + | chr1_2:6532463-6532482 | Msa0052310:CDS | 30.0% | |
| GTTTCCATATTCAATGTCTA+AGG | + | chr1_2:6532578-6532597 | Msa0052310:intron | 30.0% | |
| CTGTGAATTAGACGAAATAA+TGG | - | chr1_2:6532716-6532735 | None:intergenic | 30.0% | |
| TATCAACAATCAAGCCTTAA+GGG | - | chr1_2:6533210-6533229 | None:intergenic | 30.0% | |
| TTATCAACAATCAAGCCTTA+AGG | - | chr1_2:6533211-6533230 | None:intergenic | 30.0% | |
| AATTTATAGGCTTATACCTC+AGG | + | chr1_2:6533397-6533416 | Msa0052310:intron | 30.0% | |
| TATTCATTTGTGTATGTGCT+TGG | - | chr1_2:6533441-6533460 | None:intergenic | 30.0% | |
| GGTATAAATGATAGAAGAGA+AGG | - | chr1_2:6533574-6533593 | None:intergenic | 30.0% | |
| ATAGACCAACATATGATTGA+TGG | - | chr1_2:6533636-6533655 | None:intergenic | 30.0% | |
| TCTATCTTGTCATAGAAATG+TGG | + | chr1_2:6533651-6533670 | Msa0052310:intron | 30.0% | |
| ! | CATTTAGAGTTTCATCAACA+GGG | - | chr1_2:6533734-6533753 | None:intergenic | 30.0% |
| ! | TCATTTAGAGTTTCATCAAC+AGG | - | chr1_2:6533735-6533754 | None:intergenic | 30.0% |
| ATACAGATTGTGAGACTATT+TGG | + | chr1_2:6534147-6534166 | Msa0052310:CDS | 30.0% | |
| TCAATTGATTGTGGTGAATT+TGG | + | chr1_2:6534266-6534285 | Msa0052310:CDS | 30.0% | |
| TGTTATGGGATACTTTCTAT+GGG | + | chr1_2:6534300-6534319 | Msa0052310:CDS | 30.0% | |
| ! | TTGTCGAGAAAAATTTGCTT+TGG | - | chr1_2:6534760-6534779 | None:intergenic | 30.0% |
| GCAAATAACAATATAAGTGC+TGG | + | chr1_2:6534793-6534812 | Msa0052310:intron | 30.0% | |
| TCAGATTTACTATCCAATTC+AGG | - | chr1_2:6534940-6534959 | None:intergenic | 30.0% | |
| AGAAAGTGAAAAGAAAACAC+AGG | + | chr1_2:6534983-6535002 | Msa0052310:CDS | 30.0% | |
| CATATGTTGTTCAAAGTTGA+CGG | + | chr1_2:6535323-6535342 | Msa0052310:intron | 30.0% | |
| !! | TTGAAAAATATTGGTGTCAG+AGG | + | chr1_2:6535423-6535442 | Msa0052310:CDS | 30.0% |
| ! | TGATAATGTGCAATAATCTC+TGG | - | chr1_2:6535515-6535534 | None:intergenic | 30.0% |
| AATAAGAAGATACCATAGCA+AGG | + | chr1_2:6535802-6535821 | Msa0052310:intron | 30.0% | |
| ATAAGAAGATACCATAGCAA+GGG | + | chr1_2:6535803-6535822 | Msa0052310:intron | 30.0% | |
| ATTTGCCTTCATAATCTCAA+TGG | + | chr1_2:6535949-6535968 | Msa0052310:intron | 30.0% | |
| ACAATCCATTGAGATTATGA+AGG | - | chr1_2:6535957-6535976 | None:intergenic | 30.0% | |
| TCAATGGTGTTTGTTCTAAT+TGG | + | chr1_2:6536048-6536067 | Msa0052310:intron | 30.0% | |
| !!! | TTGTTTTTGAAAATAGTCCC+TGG | + | chr1_2:6536202-6536221 | Msa0052310:intron | 30.0% |
| ATGCAAAACATCACAAAAGT+GGG | - | chr1_2:6536229-6536248 | None:intergenic | 30.0% | |
| TATGCAAAACATCACAAAAG+TGG | - | chr1_2:6536230-6536249 | None:intergenic | 30.0% | |
| ! | AAGAGGCTAAAATATGGTTT+TGG | - | chr1_2:6536369-6536388 | None:intergenic | 30.0% |
| AGAATGGTGCAATTTATAAG+AGG | - | chr1_2:6536386-6536405 | None:intergenic | 30.0% | |
| TAGGCATGACATTGTTATAT+TGG | + | chr1_2:6536695-6536714 | Msa0052310:intron | 30.0% | |
| TCAAATACTTGAGTCTTTCT+TGG | + | chr1_2:6536718-6536737 | Msa0052310:CDS | 30.0% | |
| CTAGCATAATCAATCTTCAA+TGG | - | chr1_2:6536857-6536876 | None:intergenic | 30.0% | |
| CATTGAAGATTGATTATGCT+AGG | + | chr1_2:6536855-6536874 | Msa0052310:CDS | 30.0% | |
| ! | GATCAAATTGACTTCATAGT+TGG | + | chr1_2:6536905-6536924 | Msa0052310:CDS | 30.0% |
| ! | AACTTTAGCACCTTTAACTT+TGG | - | chr1_2:6536950-6536969 | None:intergenic | 30.0% |
| AATCCAAAATAAATGCGACA+TGG | - | chr1_2:6536981-6537000 | None:intergenic | 30.0% | |
| AAATAGGAGTAGCATTAGAA+AGG | + | chr1_2:6537006-6537025 | Msa0052310:intron | 30.0% | |
| AATCAAATGATTCTGTCAAC+TGG | + | chr1_2:6537221-6537240 | Msa0052310:intron | 30.0% | |
| ATCAAATGATTCTGTCAACT+GGG | + | chr1_2:6537222-6537241 | Msa0052310:intron | 30.0% | |
| ! | AAACAATATTTTATTGGGGG+TGG | + | chr1_2:6537268-6537287 | Msa0052310:intron | 30.0% |
| ! | AACAATATTTTATTGGGGGT+GGG | + | chr1_2:6537269-6537288 | Msa0052310:intron | 30.0% |
| AGAAATAAACAGTACGGTAA+TGG | - | chr1_2:6537321-6537340 | None:intergenic | 30.0% | |
| GATATGTTATGTTTGGATGA+AGG | + | chr1_2:6537379-6537398 | Msa0052310:intron | 30.0% | |
| ATGTTTGGATGAAGGATATA+AGG | + | chr1_2:6537387-6537406 | Msa0052310:intron | 30.0% | |
| TGTTTGGATGAAGGATATAA+GGG | + | chr1_2:6537388-6537407 | Msa0052310:intron | 30.0% | |
| AGGGGATACCATATATAAAT+AGG | + | chr1_2:6537461-6537480 | Msa0052310:intron | 30.0% | |
| ! | CATTTGATAGTTGTGATGAA+AGG | + | chr1_2:6537514-6537533 | Msa0052310:intron | 30.0% |
| AGAAAGATAGAAAGAGTCAA+GGG | - | chr1_2:6537595-6537614 | None:intergenic | 30.0% | |
| AAGAAAGATAGAAAGAGTCA+AGG | - | chr1_2:6537596-6537615 | None:intergenic | 30.0% | |
| ATGACTTAGTTGTTGCATTT+AGG | + | chr1_2:6537665-6537684 | Msa0052310:intron | 30.0% | |
| TATAGCCCAGAAAAAATCTT+TGG | - | chr1_2:6537726-6537745 | None:intergenic | 30.0% | |
| ! | ATGTTTCTACTTTCTAGTCA+TGG | + | chr1_2:6537835-6537854 | Msa0052310:intron | 30.0% |
| GCATAAGCTATTATGAAGAA+TGG | - | chr1_2:6537995-6538014 | None:intergenic | 30.0% | |
| ! | AAATTTAAAATGCATGCCTG+AGG | + | chr1_2:6538108-6538127 | Msa0052310:intron | 30.0% |
| !! | TATTTTTCTTAAAGGGTGTG+AGG | - | chr1_2:6538395-6538414 | None:intergenic | 30.0% |
| AATTCCCATAAAGGACAATT+TGG | - | chr1_2:6538491-6538510 | None:intergenic | 30.0% | |
| TTAAGACCTTAATTAGTTGG+AGG | + | chr1_2:6538542-6538561 | Msa0052310:intron | 30.0% | |
| TAAGACCTTAATTAGTTGGA+GGG | + | chr1_2:6538543-6538562 | Msa0052310:intron | 30.0% | |
| TAATACCCTCCAACTAATTA+AGG | - | chr1_2:6538551-6538570 | None:intergenic | 30.0% | |
| !! | AATTAGTTGGAGGGTATTAT+AGG | + | chr1_2:6538552-6538571 | Msa0052310:intron | 30.0% |
| ! | ATGTTGCTTATATTCAAGAC+CGG | + | chr1_2:6538645-6538664 | Msa0052310:intron | 30.0% |
| AAAAGGAAAACTACTCAATC+CGG | - | chr1_2:6538667-6538686 | None:intergenic | 30.0% | |
| CTTGTGCTATATGTTAATTG+TGG | - | chr1_2:6538876-6538895 | None:intergenic | 30.0% | |
| ATGCAGCATTTAGTCAAAAT+GGG | - | chr1_2:6538969-6538988 | None:intergenic | 30.0% | |
| AAATGTCAACTTCAACCAAT+TGG | + | chr1_2:6539057-6539076 | Msa0052310:CDS | 30.0% | |
| AAGCATATCAAACAGACAAA+AGG | - | chr1_2:6539134-6539153 | None:intergenic | 30.0% | |
| ! | CTGTTTGATATGCTTCATTT+TGG | + | chr1_2:6539139-6539158 | Msa0052310:intron | 30.0% |
| TATTGTCTACTATAGTGTGA+AGG | + | chr1_2:6539208-6539227 | Msa0052310:intron | 30.0% | |
| ATTGTCTACTATAGTGTGAA+GGG | + | chr1_2:6539209-6539228 | Msa0052310:intron | 30.0% | |
| !! | ACGTACAAAACTTTGAAATC+AGG | - | chr1_2:6539328-6539347 | None:intergenic | 30.0% |
| TGTGAAAACTATTGCTTCTA+CGG | - | chr1_2:6539355-6539374 | None:intergenic | 30.0% | |
| ATTACAACATCCAACCTTAA+AGG | + | chr1_2:6539645-6539664 | Msa0052310:intron | 30.0% | |
| CATAAGGAGAAAAAAAAGCA+AGG | + | chr1_2:6539725-6539744 | Msa0052310:intron | 30.0% | |
| TTTATGTGAAGTATATTGGC+AGG | + | chr1_2:6539786-6539805 | Msa0052310:intron | 30.0% | |
| ! | GCAGCATAACTTCATTATTT+TGG | + | chr1_2:6539836-6539855 | Msa0052310:intron | 30.0% |
| TATTTCAGTTGTACATGAGA+TGG | + | chr1_2:6539951-6539970 | Msa0052310:intron | 30.0% | |
| ATTACTGAAAAACGGTTACA+AGG | + | chr1_2:6540185-6540204 | Msa0052310:intron | 30.0% | |
| AGTTCACACTTCACATATTT+CGG | + | chr1_2:6540736-6540755 | Msa0052310:intron | 30.0% | |
| ! | TCCATTACGTGATTTTTGAA+GGG | - | chr1_2:6540849-6540868 | None:intergenic | 30.0% |
| ! | ATCCATTACGTGATTTTTGA+AGG | - | chr1_2:6540850-6540869 | None:intergenic | 30.0% |
| TATGTTATAGTCTCATTTGG+AGG | - | chr1_2:6540898-6540917 | None:intergenic | 30.0% | |
| TGCTATGTTATAGTCTCATT+TGG | - | chr1_2:6540901-6540920 | None:intergenic | 30.0% | |
| TATCTCTCACTAAATGACAT+AGG | - | chr1_2:6540936-6540955 | None:intergenic | 30.0% | |
| AATCACATGTGTTAGTGTTA+GGG | - | chr1_2:6541397-6541416 | None:intergenic | 30.0% | |
| TAATCACATGTGTTAGTGTT+AGG | - | chr1_2:6541398-6541417 | None:intergenic | 30.0% | |
| GATGAAGGTTAATAAGGAGT+AGG | - | chr1_2:6531899-6531918 | None:intergenic | 35.0% | |
| TCAGCCCTAAACTATCTTAT+CGG | + | chr1_2:6531917-6531936 | Msa0052310:five_prime_UTR | 35.0% | |
| TAGTTACCAGAGAAAGACTT+GGG | - | chr1_2:6532114-6532133 | None:intergenic | 35.0% | |
| TTAGTTACCAGAGAAAGACT+TGG | - | chr1_2:6532115-6532134 | None:intergenic | 35.0% | |
| ATCGTCCCTGTAAAAAAGAA+GGG | - | chr1_2:6532226-6532245 | None:intergenic | 35.0% | |
| ! | ATTGTTGTTGTGATCAGCTT+CGG | - | chr1_2:6532271-6532290 | None:intergenic | 35.0% |
| !! | TGAGATTATTGTTTTACCCG+AGG | + | chr1_2:6532430-6532449 | Msa0052310:CDS | 35.0% |
| !! | TATTGTTTTACCCGAGGATT+TGG | + | chr1_2:6532436-6532455 | Msa0052310:CDS | 35.0% |
| TTTGCTCAATTCCAAATCCT+CGG | - | chr1_2:6532450-6532469 | None:intergenic | 35.0% | |
| CACTCCTTAGACATTGAATA+TGG | - | chr1_2:6532585-6532604 | None:intergenic | 35.0% | |
| CAGTATATGTAGTGCATGTT+TGG | - | chr1_2:6532744-6532763 | None:intergenic | 35.0% | |
| CAAACATGCACTACATATAC+TGG | + | chr1_2:6532742-6532761 | Msa0052310:intron | 35.0% | |
| !! | TACATATACTGGCTCCAATT+AGG | + | chr1_2:6532753-6532772 | Msa0052310:intron | 35.0% |
| TGAGCTAATAATAGCTAGCT+TGG | - | chr1_2:6532977-6532996 | None:intergenic | 35.0% | |
| AGCTATTATTAGCTCACAAG+TGG | + | chr1_2:6532981-6533000 | Msa0052310:intron | 35.0% | |
| GCTATTATTAGCTCACAAGT+GGG | + | chr1_2:6532982-6533001 | Msa0052310:intron | 35.0% | |
| !! | ATTACTATAAAGGGGGTGTT+TGG | + | chr1_2:6533294-6533313 | Msa0052310:intron | 35.0% |
| !! | TTACTATAAAGGGGGTGTTT+GGG | + | chr1_2:6533295-6533314 | Msa0052310:intron | 35.0% |
| AAGTGCCATCAATCATATGT+TGG | + | chr1_2:6533628-6533647 | Msa0052310:intron | 35.0% | |
| TAGAAATGTGGACCAGTAAA+AGG | + | chr1_2:6533663-6533682 | Msa0052310:intron | 35.0% | |
| ACCAGTAAAAGGCAAAAAGA+AGG | + | chr1_2:6533674-6533693 | Msa0052310:CDS | 35.0% | |
| CCAGTAAAAGGCAAAAAGAA+GGG | + | chr1_2:6533675-6533694 | Msa0052310:CDS | 35.0% | |
| TTGAATTATCTCCTTCACCA+GGG | - | chr1_2:6533896-6533915 | None:intergenic | 35.0% | |
| ATAATTCAACATGCTGCACT+GGG | + | chr1_2:6533907-6533926 | Msa0052310:CDS | 35.0% | |
| ! | TTGCATATGACAGAGTTGAT+GGG | + | chr1_2:6534243-6534262 | Msa0052310:CDS | 35.0% |
| ATTGTGGTGAATTTGGAGAT+TGG | + | chr1_2:6534273-6534292 | Msa0052310:CDS | 35.0% | |
| GTGTTATGGGATACTTTCTA+TGG | + | chr1_2:6534299-6534318 | Msa0052310:CDS | 35.0% | |
| TCAAAACAGACACTTCTACA+TGG | + | chr1_2:6534342-6534361 | Msa0052310:CDS | 35.0% | |
| CAAAACAGACACTTCTACAT+GGG | + | chr1_2:6534343-6534362 | Msa0052310:CDS | 35.0% | |
| !! | TGAAGCTCTAAAGTCATTAG+AGG | + | chr1_2:6534424-6534443 | Msa0052310:CDS | 35.0% |
| CATCTGAATGATGAAGAGAT+TGG | - | chr1_2:6534595-6534614 | None:intergenic | 35.0% | |
| ! | TCAATTACCATGTTTTCCGT+TGG | - | chr1_2:6534913-6534932 | None:intergenic | 35.0% |
| AAGTGAAAAGAAAACACAGG+CGG | + | chr1_2:6534986-6535005 | Msa0052310:CDS | 35.0% | |
| ACTGGACAAAACTTATATGC+AGG | - | chr1_2:6535297-6535316 | None:intergenic | 35.0% | |
| CGTCAACTTTGAACAACATA+TGG | - | chr1_2:6535325-6535344 | None:intergenic | 35.0% | |
| ATTGTTGCAGAATAAGCTTC+AGG | - | chr1_2:6535404-6535423 | None:intergenic | 35.0% | |
| ! | TGATGGTGTAAAAATGGATG+AGG | + | chr1_2:6535469-6535488 | Msa0052310:CDS | 35.0% |
| TAAAAATGGATGAGGAAGGA+TGG | + | chr1_2:6535477-6535496 | Msa0052310:CDS | 35.0% | |
| ACAGTAATTGACTGTTTCAC+CGG | + | chr1_2:6535557-6535576 | Msa0052310:CDS | 35.0% | |
| ! | AATGTGTTCCAACTTGCTTT+GGG | + | chr1_2:6535877-6535896 | Msa0052310:intron | 35.0% |
| CAAATCCATTGAGAACATGA+AGG | - | chr1_2:6535934-6535953 | None:intergenic | 35.0% | |
| ! | ATCACTCTTCACTCTTTTAC+CGG | + | chr1_2:6535990-6536009 | Msa0052310:intron | 35.0% |
| TTCTAATTGGATTGTTCACC+TGG | + | chr1_2:6536061-6536080 | Msa0052310:intron | 35.0% | |
| TGCAAAACATCACAAAAGTG+GGG | - | chr1_2:6536228-6536247 | None:intergenic | 35.0% | |
| ! | TTTGTGATGTTTTGCATACG+TGG | + | chr1_2:6536232-6536251 | Msa0052310:intron | 35.0% |
| TTGAAACCAGACATATTTGC+AGG | + | chr1_2:6536341-6536360 | Msa0052310:intron | 35.0% | |
| TGAAACCAGACATATTTGCA+GGG | + | chr1_2:6536342-6536361 | Msa0052310:intron | 35.0% | |
| AACAAATACTGCTCACAGAA+TGG | - | chr1_2:6536402-6536421 | None:intergenic | 35.0% | |
| ATAAACTAAAGACAAGGAGG+AGG | - | chr1_2:6536493-6536512 | None:intergenic | 35.0% | |
| TGTAGACAAGTGATTCATGT+TGG | + | chr1_2:6536618-6536637 | Msa0052310:intron | 35.0% | |
| GTAGACAAGTGATTCATGTT+GGG | + | chr1_2:6536619-6536638 | Msa0052310:intron | 35.0% | |
| ! | TAATGCTGCTATTTATCGAG+TGG | + | chr1_2:6536880-6536899 | Msa0052310:CDS | 35.0% |
| AATAAATGCGACATGGCTAA+AGG | - | chr1_2:6536974-6536993 | None:intergenic | 35.0% | |
| ! | TAGCCATGTCGCATTTATTT+TGG | + | chr1_2:6536975-6536994 | Msa0052310:intron | 35.0% |
| ACAATTAGACGGATAAAGAC+GGG | - | chr1_2:6537057-6537076 | None:intergenic | 35.0% | |
| CACAATTAGACGGATAAAGA+CGG | - | chr1_2:6537058-6537077 | None:intergenic | 35.0% | |
| GCATAGCACAAATATTACCT+AGG | - | chr1_2:6537110-6537129 | None:intergenic | 35.0% | |
| ! | ACAATATTTTATTGGGGGTG+GGG | + | chr1_2:6537270-6537289 | Msa0052310:intron | 35.0% |
| TTATGATTATTCAGGGCAGT+TGG | + | chr1_2:6537430-6537449 | Msa0052310:intron | 35.0% | |
| TTTACTATTTCCACTGCTTC+TGG | + | chr1_2:6537700-6537719 | Msa0052310:intron | 35.0% | |
| !!! | TTCTGGCCAAAGATTTTTTC+TGG | + | chr1_2:6537717-6537736 | Msa0052310:intron | 35.0% |
| !!! | TCTGGCCAAAGATTTTTTCT+GGG | + | chr1_2:6537718-6537737 | Msa0052310:intron | 35.0% |
| GAAAGTAGAAACATGTCACA+TGG | - | chr1_2:6537829-6537848 | None:intergenic | 35.0% | |
| TCTTTCCTTCAAGTCAAGTT+AGG | + | chr1_2:6537877-6537896 | Msa0052310:intron | 35.0% | |
| ! | GCTTATGCTTTTAGTATGGT+TGG | + | chr1_2:6538007-6538026 | Msa0052310:intron | 35.0% |
| TAGGGAACAAATTCCCATAA+AGG | - | chr1_2:6538500-6538519 | None:intergenic | 35.0% | |
| TATGTAGAGCTATTGCATAG+CGG | + | chr1_2:6538728-6538747 | Msa0052310:intron | 35.0% | |
| TTGTGAAATAGCTGCTATAG+CGG | + | chr1_2:6538797-6538816 | Msa0052310:intron | 35.0% | |
| AGCATTTAGTCAAAATGGGA+GGG | - | chr1_2:6538965-6538984 | None:intergenic | 35.0% | |
| GATGCAGCATTTAGTCAAAA+TGG | - | chr1_2:6538970-6538989 | None:intergenic | 35.0% | |
| TGAAGTTGACATTTCTTGGA+AGG | - | chr1_2:6539051-6539070 | None:intergenic | 35.0% | |
| TGGTTGAAGTTGACATTTCT+TGG | - | chr1_2:6539055-6539074 | None:intergenic | 35.0% | |
| ATAGAGATAACTCTGCCAAT+TGG | - | chr1_2:6539075-6539094 | None:intergenic | 35.0% | |
| !! | AGTTGTAACACCTTTAAGGT+TGG | - | chr1_2:6539658-6539677 | None:intergenic | 35.0% |
| TTAGTTAGAAGCTTGTGATG+AGG | - | chr1_2:6540241-6540260 | None:intergenic | 35.0% | |
| ACATGATAAGAAGAATGCAG+AGG | - | chr1_2:6540343-6540362 | None:intergenic | 35.0% | |
| ACTCTAACTTACGTCATGTT+TGG | + | chr1_2:6540401-6540420 | Msa0052310:intron | 35.0% | |
| TTACGTCATGTTTGGATAGA+TGG | + | chr1_2:6540409-6540428 | Msa0052310:intron | 35.0% | |
| TACGTCATGTTTGGATAGAT+GGG | + | chr1_2:6540410-6540429 | Msa0052310:intron | 35.0% | |
| ! | GGTTAACTGAGTCTACATTT+TGG | - | chr1_2:6540581-6540600 | None:intergenic | 35.0% |
| ! | TAAAAGTATGCTTGGATGGA+GGG | - | chr1_2:6540626-6540645 | None:intergenic | 35.0% |
| ! | TTAAAAGTATGCTTGGATGG+AGG | - | chr1_2:6540627-6540646 | None:intergenic | 35.0% |
| CCATTCTGATTTCATGGAAA+GGG | - | chr1_2:6540710-6540729 | None:intergenic | 35.0% | |
| CATATGCCATTCTGATTTCA+TGG | - | chr1_2:6540716-6540735 | None:intergenic | 35.0% | |
| AATGTAGCAAGGTGCAATTA+AGG | - | chr1_2:6540874-6540893 | None:intergenic | 35.0% | |
| TAATAACGTGTAAGCAGTTG+CGG | - | chr1_2:6541058-6541077 | None:intergenic | 35.0% | |
| TGTAGTGAACGAATGAATGA+AGG | - | chr1_2:6541126-6541145 | None:intergenic | 35.0% | |
| ! | TTTGTTTGAGACTTGAGAAG+AGG | - | chr1_2:6541153-6541172 | None:intergenic | 35.0% |
| !! | ATACTTGAAATTCGGTGTTC+AGG | + | chr1_2:6541467-6541486 | Msa0052310:intron | 35.0% |
| !! | AAATTCGGTGTTCAGGAAAA+TGG | + | chr1_2:6541474-6541493 | Msa0052310:intron | 35.0% |
| AGGGCTGATGAAGGTTAATA+AGG | - | chr1_2:6531905-6531924 | None:intergenic | 40.0% | |
| ! | AGATAGTTTAGGGCTGATGA+AGG | - | chr1_2:6531914-6531933 | None:intergenic | 40.0% |
| AGAACCGAGAGATTGAATAG+CGG | - | chr1_2:6532078-6532097 | None:intergenic | 40.0% | |
| CATCGTCCCTGTAAAAAAGA+AGG | - | chr1_2:6532227-6532246 | None:intergenic | 40.0% | |
| !!! | CTTCTTTTTTACAGGGACGA+TGG | + | chr1_2:6532225-6532244 | Msa0052310:intron | 40.0% |
| GATTCATCAAACCTCATTCC+TGG | + | chr1_2:6532294-6532313 | Msa0052310:CDS | 40.0% | |
| TTGCTCAATTCCAAATCCTC+GGG | - | chr1_2:6532449-6532468 | None:intergenic | 40.0% | |
| TCTTTGCCTGAAAGGAAAGA+GGG | - | chr1_2:6532493-6532512 | None:intergenic | 40.0% | |
| TTCTTTGCCTGAAAGGAAAG+AGG | - | chr1_2:6532494-6532513 | None:intergenic | 40.0% | |
| TTCCTTTCAGGCAAAGAATG+AGG | + | chr1_2:6532496-6532515 | Msa0052310:CDS | 40.0% | |
| TACCTCATTCTTTGCCTGAA+AGG | - | chr1_2:6532501-6532520 | None:intergenic | 40.0% | |
| CGCTGAGTTTCACAGAATTA+CGG | + | chr1_2:6532656-6532675 | Msa0052310:intron | 40.0% | |
| !!! | ACTCTGGTTTTAGCGAATCA+CGG | + | chr1_2:6532685-6532704 | Msa0052310:intron | 40.0% |
| ! | CCCTTCTTTTTGCCTTTTAC+TGG | - | chr1_2:6533678-6533697 | None:intergenic | 40.0% |
| TCTAAATGAAGTGAGTGCAG+AGG | + | chr1_2:6533746-6533765 | Msa0052310:CDS | 40.0% | |
| CACAGTAGGATGATTCACTT+TGG | - | chr1_2:6533839-6533858 | None:intergenic | 40.0% | |
| AGTGAATCATCCTACTGTGA+TGG | + | chr1_2:6533840-6533859 | Msa0052310:CDS | 40.0% | |
| GTTGAATTATCTCCTTCACC+AGG | - | chr1_2:6533897-6533916 | None:intergenic | 40.0% | |
| GATAATTCAACATGCTGCAC+TGG | + | chr1_2:6533906-6533925 | Msa0052310:CDS | 40.0% | |
| AAGATCAAAGTCACGGTTCT+GGG | - | chr1_2:6533994-6534013 | None:intergenic | 40.0% | |
| TAAGATCAAAGTCACGGTTC+TGG | - | chr1_2:6533995-6534014 | None:intergenic | 40.0% | |
| AAGGTTTGTGGGATAGAACT+GGG | + | chr1_2:6534077-6534096 | Msa0052310:CDS | 40.0% | |
| ! | AGTGATTCTGATTCGTTAGC+TGG | - | chr1_2:6534203-6534222 | None:intergenic | 40.0% |
| AGAATCACTTCCCATGAGTT+TGG | + | chr1_2:6534214-6534233 | Msa0052310:CDS | 40.0% | |
| GTTGCATATGACAGAGTTGA+TGG | + | chr1_2:6534242-6534261 | Msa0052310:CDS | 40.0% | |
| ! | GTTGATGGGTCAATTGATTG+TGG | + | chr1_2:6534257-6534276 | Msa0052310:CDS | 40.0% |
| TGGTGAATTTGGAGATTGGA+TGG | + | chr1_2:6534277-6534296 | Msa0052310:CDS | 40.0% | |
| ! | TTGGAGATTGGATGGTGTTA+TGG | + | chr1_2:6534285-6534304 | Msa0052310:CDS | 40.0% |
| !! | TGGAGATTGGATGGTGTTAT+GGG | + | chr1_2:6534286-6534305 | Msa0052310:CDS | 40.0% |
| ! | ATGGAGTATCTAGCATTTGG+TGG | + | chr1_2:6534380-6534399 | Msa0052310:CDS | 40.0% |
| ! | TGGAGTATCTAGCATTTGGT+GGG | + | chr1_2:6534381-6534400 | Msa0052310:CDS | 40.0% |
| CAAACAACCTGAAGAAACCT+TGG | + | chr1_2:6534469-6534488 | Msa0052310:CDS | 40.0% | |
| TGATAAGTTCTCGTCTACCA+AGG | - | chr1_2:6534489-6534508 | None:intergenic | 40.0% | |
| TTGGTAGACGAGAACTTATC+AGG | + | chr1_2:6534488-6534507 | Msa0052310:CDS | 40.0% | |
| !! | GAAGAGTATTCAGCTGAGAT+TGG | + | chr1_2:6534521-6534540 | Msa0052310:CDS | 40.0% |
| CTTGAGAGAACTAGTTGCAA+CGG | + | chr1_2:6534620-6534639 | Msa0052310:CDS | 40.0% | |
| CTGTTCTGTATCAAATACCC+TGG | + | chr1_2:6534655-6534674 | Msa0052310:CDS | 40.0% | |
| TCATACACCAACGGAAAACA+TGG | + | chr1_2:6534903-6534922 | Msa0052310:CDS | 40.0% | |
| GGTAATTGATACGCCTGAAT+TGG | + | chr1_2:6534924-6534943 | Msa0052310:CDS | 40.0% | |
| GAATAGCAACATACTGCAGA+AGG | - | chr1_2:6535086-6535105 | None:intergenic | 40.0% | |
| GGTGTAAAAATGGATGAGGA+AGG | + | chr1_2:6535473-6535492 | Msa0052310:CDS | 40.0% | |
| ATGCCATCCAATTTGCACAA+CGG | + | chr1_2:6535591-6535610 | Msa0052310:CDS | 40.0% | |
| ! | TTACTGTTTCTCCCTTGCTA+TGG | - | chr1_2:6535817-6535836 | None:intergenic | 40.0% |
| ! | CAATGTGTTCCAACTTGCTT+TGG | + | chr1_2:6535876-6535895 | Msa0052310:intron | 40.0% |
| ATACTGAACCCAAAGCAAGT+TGG | - | chr1_2:6535888-6535907 | None:intergenic | 40.0% | |
| !! | GAACATGAAGGCACTCATAT+AGG | - | chr1_2:6535922-6535941 | None:intergenic | 40.0% |
| CAAAACGAGGCATATTTGCA+GGG | - | chr1_2:6536133-6536152 | None:intergenic | 40.0% | |
| GTGTGATTGTATGCTTGCAT+CGG | + | chr1_2:6536434-6536453 | Msa0052310:intron | 40.0% | |
| GAGGAGGACAATATGAATGA+TGG | - | chr1_2:6536477-6536496 | None:intergenic | 40.0% | |
| ACTTGAGTCTTTCTTGGAGA+AGG | + | chr1_2:6536724-6536743 | Msa0052310:CDS | 40.0% | |
| AAAGGCAAGCATAAAACGTC+AGG | + | chr1_2:6537024-6537043 | Msa0052310:intron | 40.0% | |
| GGCAAGAGATCACAATTAGA+CGG | - | chr1_2:6537068-6537087 | None:intergenic | 40.0% | |
| TCATCAAGAGGATACAGATG+AGG | - | chr1_2:6537159-6537178 | None:intergenic | 40.0% | |
| ! | CAATATTTTATTGGGGGTGG+GGG | + | chr1_2:6537271-6537290 | Msa0052310:intron | 40.0% |
| AATAATTGATGGAGCGCGTT+AGG | - | chr1_2:6537639-6537658 | None:intergenic | 40.0% | |
| ACATGTCACATGGAACTCTT+GGG | - | chr1_2:6537819-6537838 | None:intergenic | 40.0% | |
| AACATGTCACATGGAACTCT+TGG | - | chr1_2:6537820-6537839 | None:intergenic | 40.0% | |
| TTCCTTCAAGTCAAGTTAGG+AGG | + | chr1_2:6537880-6537899 | Msa0052310:intron | 40.0% | |
| GTATGCTTCTTTGACCATCA+AGG | + | chr1_2:6538045-6538064 | Msa0052310:intron | 40.0% | |
| TAAAATGCATGCCTGAGGTT+AGG | + | chr1_2:6538113-6538132 | Msa0052310:intron | 40.0% | |
| AAAATGCATGCCTGAGGTTA+GGG | + | chr1_2:6538114-6538133 | Msa0052310:intron | 40.0% | |
| CATATCATAAGTCGCAACCT+TGG | - | chr1_2:6538286-6538305 | None:intergenic | 40.0% | |
| GCTATAGCAATACTGCATAG+TGG | + | chr1_2:6538821-6538840 | Msa0052310:intron | 40.0% | |
| CAGCATTTAGTCAAAATGGG+AGG | - | chr1_2:6538966-6538985 | None:intergenic | 40.0% | |
| ! | TACTCTGTTCAGTGTTGCTA+AGG | + | chr1_2:6539000-6539019 | Msa0052310:CDS | 40.0% |
| TTGTTTGAACTTCAACCGCT+TGG | + | chr1_2:6539575-6539594 | Msa0052310:intron | 40.0% | |
| TGTTTGAACTTCAACCGCTT+GGG | + | chr1_2:6539576-6539595 | Msa0052310:intron | 40.0% | |
| GGAACACTCATGTACACATA+AGG | + | chr1_2:6539709-6539728 | Msa0052310:intron | 40.0% | |
| TGTGAAGTATATTGGCAGGT+AGG | + | chr1_2:6539790-6539809 | Msa0052310:intron | 40.0% | |
| GTGAAGTATATTGGCAGGTA+GGG | + | chr1_2:6539791-6539810 | Msa0052310:intron | 40.0% | |
| AACTCTTCTATCATGGTGAC+AGG | + | chr1_2:6539884-6539903 | Msa0052310:intron | 40.0% | |
| TTCAGTTGTACATGAGATGG+AGG | + | chr1_2:6539954-6539973 | Msa0052310:intron | 40.0% | |
| TCAGTTGTACATGAGATGGA+GGG | + | chr1_2:6539955-6539974 | Msa0052310:intron | 40.0% | |
| GCTACAAGTGAATCAAGCAA+AGG | + | chr1_2:6540003-6540022 | Msa0052310:intron | 40.0% | |
| !! | TCTTCAGCTAGTCTTTGTTC+TGG | - | chr1_2:6540043-6540062 | None:intergenic | 40.0% |
| TTGTTCTTAGAGAGTTGCTC+AGG | - | chr1_2:6540106-6540125 | None:intergenic | 40.0% | |
| ! | CTCTAAGAACAAAAACGCCA+TGG | + | chr1_2:6540114-6540133 | Msa0052310:intron | 40.0% |
| CAATCTTCAAGCTTCATCCA+TGG | - | chr1_2:6540134-6540153 | None:intergenic | 40.0% | |
| GAAGAATGCAGAGGTTACTT+AGG | - | chr1_2:6540334-6540353 | None:intergenic | 40.0% | |
| TTTGAAAGGGAGGGTTTGAA+GGG | - | chr1_2:6540602-6540621 | None:intergenic | 40.0% | |
| !! | TTTTGAAAGGGAGGGTTTGA+AGG | - | chr1_2:6540603-6540622 | None:intergenic | 40.0% |
| !!! | TTGGATGGAGGGTTTTGAAA+GGG | - | chr1_2:6540615-6540634 | None:intergenic | 40.0% |
| GATTTCATGGAAAGGGACAT+GGG | - | chr1_2:6540703-6540722 | None:intergenic | 40.0% | |
| TGATTTCATGGAAAGGGACA+TGG | - | chr1_2:6540704-6540723 | None:intergenic | 40.0% | |
| CCCTTTCCATGAAATCAGAA+TGG | + | chr1_2:6540707-6540726 | Msa0052310:intron | 40.0% | |
| GCCATTCTGATTTCATGGAA+AGG | - | chr1_2:6540711-6540730 | None:intergenic | 40.0% | |
| GCCCTTCAAAAATCACGTAA+TGG | + | chr1_2:6540845-6540864 | Msa0052310:intron | 40.0% | |
| CATTTGGAGGAAATGTAGCA+AGG | - | chr1_2:6540885-6540904 | None:intergenic | 40.0% | |
| TTGGGGATGGAAAACATAAC+CGG | - | chr1_2:6541217-6541236 | None:intergenic | 40.0% | |
| ATGTTTGTGTTAGCGGTTTC+TGG | - | chr1_2:6541256-6541275 | None:intergenic | 40.0% | |
| CCGTATGATGTTTGTGTTAG+CGG | - | chr1_2:6541263-6541282 | None:intergenic | 40.0% | |
| CCGCTAACACAAACATCATA+CGG | + | chr1_2:6541260-6541279 | Msa0052310:intron | 40.0% | |
| ! | GTCATCGGTAACTTGCATTA+CGG | - | chr1_2:6541303-6541322 | None:intergenic | 40.0% |
| !! | TCCTGGCTTTTCTTAGAACT+CGG | - | chr1_2:6541330-6541349 | None:intergenic | 40.0% |
| CAGGATTTCGAAATCATCTC+CGG | + | chr1_2:6541345-6541364 | Msa0052310:intron | 40.0% | |
| !!! | GTGTTAGGGTTTTGTTACCA+GGG | - | chr1_2:6541383-6541402 | None:intergenic | 40.0% |
| !!! | AGTGTTAGGGTTTTGTTACC+AGG | - | chr1_2:6541384-6541403 | None:intergenic | 40.0% |
| AAATGGATGGATATTGCAGC+AGG | + | chr1_2:6541491-6541510 | Msa0052310:CDS | 40.0% | |
| AATGGATGGATATTGCAGCA+GGG | + | chr1_2:6541492-6541511 | Msa0052310:CDS | 40.0% | |
| ATATTGCAGCAGGGATACTT+TGG | + | chr1_2:6541501-6541520 | Msa0052310:CDS | 40.0% | |
| TGAGAAGATTCAATCCAGTC+TGG | - | chr1_2:6541564-6541583 | None:intergenic | 40.0% | |
| ! | GGTGATCGCCATATTGACTA+CGG | - | chr1_2:6532036-6532055 | None:intergenic | 45.0% |
| ATGTCACCCAAGTCTTTCTC+TGG | + | chr1_2:6532105-6532124 | Msa0052310:CDS | 45.0% | |
| CTTCGGAAGATGGTTGAACT+TGG | - | chr1_2:6532254-6532273 | None:intergenic | 45.0% | |
| TTGTGATCAGCTTCGGAAGA+TGG | - | chr1_2:6532264-6532283 | None:intergenic | 45.0% | |
| ! | GAGTGACAGTGTTCAAGTTC+TGG | + | chr1_2:6532600-6532619 | Msa0052310:intron | 45.0% |
| AGAATTACGGTGTAGCACTC+TGG | + | chr1_2:6532669-6532688 | Msa0052310:intron | 45.0% | |
| TGAGCTCAGAGTAGCCTAAT+TGG | - | chr1_2:6532770-6532789 | None:intergenic | 45.0% | |
| CGCTCACTATCTAAGTTGCT+GGG | - | chr1_2:6532834-6532853 | None:intergenic | 45.0% | |
| TCGCTCACTATCTAAGTTGC+TGG | - | chr1_2:6532835-6532854 | None:intergenic | 45.0% | |
| CTTAGATAGTGAGCGAAGCT+CGG | + | chr1_2:6532839-6532858 | Msa0052310:intron | 45.0% | |
| TTTGGATGGAGGGTTTAGGA+GGG | - | chr1_2:6533183-6533202 | None:intergenic | 45.0% | |
| TGTGTTTGGATGGAGGGTTT+AGG | - | chr1_2:6533187-6533206 | None:intergenic | 45.0% | |
| ! | TAAGGGTGTGTTTGGATGGA+GGG | - | chr1_2:6533193-6533212 | None:intergenic | 45.0% |
| ! | TTAAGGGTGTGTTTGGATGG+AGG | - | chr1_2:6533194-6533213 | None:intergenic | 45.0% |
| TCCATCCAAACACACCCTTA+AGG | + | chr1_2:6533193-6533212 | Msa0052310:intron | 45.0% | |
| ! | TCAAGCCTTAAGGGTGTGTT+TGG | - | chr1_2:6533201-6533220 | None:intergenic | 45.0% |
| AAATGAAGTGAGTGCAGAGG+AGG | + | chr1_2:6533749-6533768 | Msa0052310:CDS | 45.0% | |
| ! | GTTTGCTAATGGTGTTTCCG+AGG | + | chr1_2:6533929-6533948 | Msa0052310:CDS | 45.0% |
| CTAATGGTGTTTCCGAGGAA+AGG | + | chr1_2:6533934-6533953 | Msa0052310:CDS | 45.0% | |
| ATTGCACATGCCTCAGATAC+TGG | + | chr1_2:6534017-6534036 | Msa0052310:CDS | 45.0% | |
| AGCAGAGATTCCAGTATCTG+AGG | - | chr1_2:6534030-6534049 | None:intergenic | 45.0% | |
| TCAGATACTGGAATCTCTGC+TGG | + | chr1_2:6534029-6534048 | Msa0052310:CDS | 45.0% | |
| TCTGCTGGAAGCCATTTAAC+AGG | + | chr1_2:6534044-6534063 | Msa0052310:CDS | 45.0% | |
| TGTCACCAGCACCTGTTAAA+TGG | - | chr1_2:6534058-6534077 | None:intergenic | 45.0% | |
| !! | TTTAACAGGTGCTGGTGACA+AGG | + | chr1_2:6534058-6534077 | Msa0052310:CDS | 45.0% |
| CAAGGTTTGTGGGATAGAAC+TGG | + | chr1_2:6534076-6534095 | Msa0052310:CDS | 45.0% | |
| ! | GAGACTATTTGGAACGACGA+TGG | + | chr1_2:6534158-6534177 | Msa0052310:CDS | 45.0% |
| TCACTTCCCATGAGTTTGGA+AGG | + | chr1_2:6534218-6534237 | Msa0052310:CDS | 45.0% | |
| CACTTCCCATGAGTTTGGAA+GGG | + | chr1_2:6534219-6534238 | Msa0052310:CDS | 45.0% | |
| ACTTCCCATGAGTTTGGAAG+GGG | + | chr1_2:6534220-6534239 | Msa0052310:CDS | 45.0% | |
| ! | GGGATGGAGTATCTAGCATT+TGG | + | chr1_2:6534377-6534396 | Msa0052310:CDS | 45.0% |
| TCGTCTACCAAGGTTTCTTC+AGG | - | chr1_2:6534479-6534498 | None:intergenic | 45.0% | |
| ATACCTAACGACGTGATCCA+GGG | - | chr1_2:6534675-6534694 | None:intergenic | 45.0% | |
| AATACCTAACGACGTGATCC+AGG | - | chr1_2:6534676-6534695 | None:intergenic | 45.0% | |
| ATGCAGTCAAGCAACATCAG+AGG | + | chr1_2:6534876-6534895 | Msa0052310:CDS | 45.0% | |
| AGAGGTCGATCATACACCAA+CGG | + | chr1_2:6534894-6534913 | Msa0052310:CDS | 45.0% | |
| GAACAACATATGGCAGCTAC+TGG | - | chr1_2:6535315-6535334 | None:intergenic | 45.0% | |
| TGACGGCGATACCATTGTAT+TGG | + | chr1_2:6535340-6535359 | Msa0052310:intron | 45.0% | |
| TATCAAGCATCACGTTGTGC+AGG | + | chr1_2:6535530-6535549 | Msa0052310:CDS | 45.0% | |
| TCACCGTTGTGCAAATTGGA+TGG | - | chr1_2:6535597-6535616 | None:intergenic | 45.0% | |
| CTACTCACCGTTGTGCAAAT+TGG | - | chr1_2:6535601-6535620 | None:intergenic | 45.0% | |
| ATTTGCACAACGGTGAGTAG+TGG | + | chr1_2:6535601-6535620 | Msa0052310:intron | 45.0% | |
| TTTGCACAACGGTGAGTAGT+GGG | + | chr1_2:6535602-6535621 | Msa0052310:intron | 45.0% | |
| GAGTGCCTTCATGTTCTCAA+TGG | + | chr1_2:6535926-6535945 | Msa0052310:intron | 45.0% | |
| CCAAAACGAGGCATATTTGC+AGG | - | chr1_2:6536134-6536153 | None:intergenic | 45.0% | |
| ! | CCTGCAAATATGCCTCGTTT+TGG | + | chr1_2:6536131-6536150 | Msa0052310:intron | 45.0% |
| CAGGGACTAAAACCAAAACG+AGG | - | chr1_2:6536146-6536165 | None:intergenic | 45.0% | |
| TTGGTCCCTGCAAATATGTC+TGG | - | chr1_2:6536350-6536369 | None:intergenic | 45.0% | |
| ATGTTACAGGTGCAGACATG+TGG | + | chr1_2:6536814-6536833 | Msa0052310:intron | 45.0% | |
| !! | AGTTGGTGACTTCTTCGTCT+TGG | + | chr1_2:6536922-6536941 | Msa0052310:CDS | 45.0% |
| CGTCTTGGCACCAAAGTTAA+AGG | + | chr1_2:6536937-6536956 | Msa0052310:CDS | 45.0% | |
| ! | TGCTATGCGCTGTTGCTTAT+TGG | + | chr1_2:6537122-6537141 | Msa0052310:intron | 45.0% |
| GGGAGATCATGATCATCAAG+AGG | - | chr1_2:6537171-6537190 | None:intergenic | 45.0% | |
| ATTCTGTCAACTGGGATGTC+AGG | + | chr1_2:6537230-6537249 | Msa0052310:intron | 45.0% | |
| ! | AGGGCAGTTGGTTAGTTAGA+GGG | + | chr1_2:6537442-6537461 | Msa0052310:intron | 45.0% |
| AAATCTTTGGCCAGAAGCAG+TGG | - | chr1_2:6537713-6537732 | None:intergenic | 45.0% | |
| TCACATGGAACTCTTGGGAT+AGG | - | chr1_2:6537814-6537833 | None:intergenic | 45.0% | |
| ! | TGCCTCCTAACTTGACTTGA+AGG | - | chr1_2:6537885-6537904 | None:intergenic | 45.0% |
| TCTTTGACCATCAAGGTCTC+CGG | + | chr1_2:6538052-6538071 | Msa0052310:intron | 45.0% | |
| GGACAGTAAGGATTTGATCC+CGG | - | chr1_2:6538074-6538093 | None:intergenic | 45.0% | |
| TTAGAAGAGTGGGGACAGTA+AGG | - | chr1_2:6538086-6538105 | None:intergenic | 45.0% | |
| TGTCTTCCTATCTCCACCTT+GGG | + | chr1_2:6538245-6538264 | Msa0052310:CDS | 45.0% | |
| ACAATGCTTAGACCGCATGA+TGG | + | chr1_2:6538309-6538328 | Msa0052310:CDS | 45.0% | |
| CAATGCTTAGACCGCATGAT+GGG | + | chr1_2:6538310-6538329 | Msa0052310:CDS | 45.0% | |
| AGCACAAGTATCTGCTGCAT+AGG | + | chr1_2:6538888-6538907 | Msa0052310:intron | 45.0% | |
| TGGAAGGAACATGACAACTC+TGG | - | chr1_2:6539035-6539054 | None:intergenic | 45.0% | |
| GAAATTACCTCTAGCGACCA+TGG | - | chr1_2:6539109-6539128 | None:intergenic | 45.0% | |
| !! | CTATAGTGTGAAGGGTGTTG+TGG | + | chr1_2:6539217-6539236 | Msa0052310:intron | 45.0% |
| AAACTCTTAGTAGGCCCAAG+CGG | - | chr1_2:6539593-6539612 | None:intergenic | 45.0% | |
| TCTTCTATCATGGTGACAGG+TGG | + | chr1_2:6539887-6539906 | Msa0052310:intron | 45.0% | |
| !! | CAGCTAGTCTTTGTTCTGGA+AGG | - | chr1_2:6540039-6540058 | None:intergenic | 45.0% |
| GGTTACTTAGGACACAAGCT+AGG | - | chr1_2:6540322-6540341 | None:intergenic | 45.0% | |
| ! | CATGTTTGGATAGATGGGCT+TGG | + | chr1_2:6540415-6540434 | Msa0052310:intron | 45.0% |
| ! | TTTGGATAGATGGGCTTGGA+GGG | + | chr1_2:6540419-6540438 | Msa0052310:intron | 45.0% |
| !!! | ATGGAGGGTTTTGAAAGGGA+GGG | - | chr1_2:6540611-6540630 | None:intergenic | 45.0% |
| !!! | CTTGGATGGAGGGTTTTGAA+AGG | - | chr1_2:6540616-6540635 | None:intergenic | 45.0% |
| ! | TAGTGGGTCCTATCACTAAG+TGG | + | chr1_2:6540972-6540991 | Msa0052310:intron | 45.0% |
| AGTGGGTCCTATCACTAAGT+GGG | + | chr1_2:6540973-6540992 | Msa0052310:intron | 45.0% | |
| AGCAGTTGCGGAGAAGAAAT+TGG | - | chr1_2:6541046-6541065 | None:intergenic | 45.0% | |
| !! | GAACGAGAGGATGATGGTTT+TGG | - | chr1_2:6541189-6541208 | None:intergenic | 45.0% |
| ATGGAAAACATAACCGGACC+GGG | - | chr1_2:6541211-6541230 | None:intergenic | 45.0% | |
| GATGGAAAACATAACCGGAC+CGG | - | chr1_2:6541212-6541231 | None:intergenic | 45.0% | |
| !! | TGTGTTAGCGGTTTCTGGTT+CGG | - | chr1_2:6541251-6541270 | None:intergenic | 45.0% |
| TTAGAACTCGGACACGTCAT+CGG | - | chr1_2:6541318-6541337 | None:intergenic | 45.0% | |
| !! | TCCGAGTTCTAAGAAAAGCC+AGG | + | chr1_2:6541326-6541345 | Msa0052310:intron | 45.0% |
| CGGAGATGATTTCGAAATCC+TGG | - | chr1_2:6541347-6541366 | None:intergenic | 45.0% | |
| !!! | TTAGGGTTTTGTTACCAGGG+CGG | - | chr1_2:6541380-6541399 | None:intergenic | 45.0% |
| ! | TCGGTGTTCAGGAAAATGGA+TGG | + | chr1_2:6541478-6541497 | Msa0052310:intron | 45.0% |
| !! | ATAAATTCAATAATATTTAT+AGG | + | chr1_2:6533243-6533262 | Msa0052310:intron | 5.0% |
| !! | ATATAAATCTTAATTATAAA+CGG | + | chr1_2:6536566-6536585 | Msa0052310:intron | 5.0% |
| !!! | TATTTTTATTTTGTAAATTA+AGG | + | chr1_2:6540461-6540480 | Msa0052310:intron | 5.0% |
| !! | TAATTATTAATTAAAACTAT+TGG | + | chr1_2:6540795-6540814 | Msa0052310:intron | 5.0% |
| !! | AATTATATCATTATTATTAT+CGG | + | chr1_2:6541423-6541442 | Msa0052310:intron | 5.0% |
| ! | GCCATATTGACTACGGTCTC+CGG | - | chr1_2:6532029-6532048 | None:intergenic | 50.0% |
| !! | ATCACCGACTCCGACTATGA+AGG | + | chr1_2:6532050-6532069 | Msa0052310:CDS | 50.0% |
| AATAGCGGCGCCTTCATAGT+CGG | - | chr1_2:6532063-6532082 | None:intergenic | 50.0% | |
| !! | AAGAATGAGAAGCACTCGCC+AGG | - | chr1_2:6532315-6532334 | None:intergenic | 50.0% |
| TCTAAGTTGCTGGGCAGCAA+AGG | - | chr1_2:6532825-6532844 | None:intergenic | 50.0% | |
| TTGGATGGAGGGTTTAGGAG+GGG | - | chr1_2:6533182-6533201 | None:intergenic | 50.0% | |
| GTTTGGATGGAGGGTTTAGG+AGG | - | chr1_2:6533184-6533203 | None:intergenic | 50.0% | |
| ! | GCCTTAAGGGTGTGTTTGGA+TGG | - | chr1_2:6533197-6533216 | None:intergenic | 50.0% |
| ! | ATCCTACTGTGATGGTGCAG+CGG | + | chr1_2:6533848-6533867 | Msa0052310:CDS | 50.0% |
| !! | TGCTGCACTGGGTTTGCTAA+TGG | + | chr1_2:6533918-6533937 | Msa0052310:CDS | 50.0% |
| GGAAGCCATTTAACAGGTGC+TGG | + | chr1_2:6534050-6534069 | Msa0052310:CDS | 50.0% | |
| ! | GTGCTGGTGACAAGGTTTGT+GGG | + | chr1_2:6534066-6534085 | Msa0052310:CDS | 50.0% |
| GCAACCCCTTCCAAACTCAT+GGG | - | chr1_2:6534227-6534246 | None:intergenic | 50.0% | |
| TGCAACCCCTTCCAAACTCA+TGG | - | chr1_2:6534228-6534247 | None:intergenic | 50.0% | |
| GCTAGATACTCCATCCCTGA+GGG | - | chr1_2:6534374-6534393 | None:intergenic | 50.0% | |
| TGCTAGATACTCCATCCCTG+AGG | - | chr1_2:6534375-6534394 | None:intergenic | 50.0% | |
| TGGAGTCGCTGCTGGAAATT+TGG | + | chr1_2:6534541-6534560 | Msa0052310:CDS | 50.0% | |
| ATACCCTGGATCACGTCGTT+AGG | + | chr1_2:6534669-6534688 | Msa0052310:CDS | 50.0% | |
| ACATCACAAAAGTGGGGCCA+GGG | - | chr1_2:6536222-6536241 | None:intergenic | 50.0% | |
| AACATCACAAAAGTGGGGCC+AGG | - | chr1_2:6536223-6536242 | None:intergenic | 50.0% | |
| ! | CAGGGCAGTTGGTTAGTTAG+AGG | + | chr1_2:6537441-6537460 | Msa0052310:intron | 50.0% |
| ! | GGGCAGTTGGTTAGTTAGAG+GGG | + | chr1_2:6537443-6537462 | Msa0052310:intron | 50.0% |
| CTTTGACCATCAAGGTCTCC+GGG | + | chr1_2:6538053-6538072 | Msa0052310:intron | 50.0% | |
| TTTGATCCCGGAGACCTTGA+TGG | - | chr1_2:6538062-6538081 | None:intergenic | 50.0% | |
| CTGTCTTCCTATCTCCACCT+TGG | + | chr1_2:6538244-6538263 | Msa0052310:CDS | 50.0% | |
| GTCTTCCTATCTCCACCTTG+GGG | + | chr1_2:6538246-6538265 | Msa0052310:CDS | 50.0% | |
| GTCGCAACCTTGGCATAATC+TGG | - | chr1_2:6538276-6538295 | None:intergenic | 50.0% | |
| GCATCTACCTACCCATCATG+CGG | - | chr1_2:6538324-6538343 | None:intergenic | 50.0% | |
| ATTACCTCTAGCGACCATGG+TGG | - | chr1_2:6539106-6539125 | None:intergenic | 50.0% | |
| ! | GTTTGGATAGATGGGCTTGG+AGG | + | chr1_2:6540418-6540437 | Msa0052310:intron | 50.0% |
| ! | TTGGATAGATGGGCTTGGAG+GGG | + | chr1_2:6540420-6540439 | Msa0052310:intron | 50.0% |
| !!! | GATGGAGGGTTTTGAAAGGG+AGG | - | chr1_2:6540612-6540631 | None:intergenic | 50.0% |
| AGTGGGACCCACTTAGTGAT+AGG | - | chr1_2:6540983-6541002 | None:intergenic | 50.0% | |
| !!! | AGGATGATGGTTTTGGTGGC+TGG | - | chr1_2:6541182-6541201 | None:intergenic | 50.0% |
| !!! | CGAGAGGATGATGGTTTTGG+TGG | - | chr1_2:6541186-6541205 | None:intergenic | 50.0% |
| AACCATCATCCTCTCGTTCC+CGG | + | chr1_2:6541190-6541209 | Msa0052310:intron | 50.0% | |
| TTCCATCCCCAAACCCAAAC+CGG | + | chr1_2:6541225-6541244 | Msa0052310:intron | 50.0% | |
| TCATACGGTTCCGATCCAGT+CGG | + | chr1_2:6541275-6541294 | Msa0052310:intron | 50.0% | |
| !!! | TAGGGTTTTGTTACCAGGGC+GGG | - | chr1_2:6541379-6541398 | None:intergenic | 50.0% |
| TTGCAGCAGGGATACTTTGG+CGG | + | chr1_2:6541504-6541523 | Msa0052310:CDS | 50.0% | |
| CTTTGGCGGCAATGTTTGCT+TGG | + | chr1_2:6541518-6541537 | Msa0052310:CDS | 50.0% | |
| CTCAAGTGCTAGAACCAGAC+TGG | + | chr1_2:6541547-6541566 | Msa0052310:CDS | 50.0% | |
| TAAAAGAAAGCGGCGCGCTC+CGG | + | chr1_2:6531989-6532008 | Msa0052310:five_prime_UTR | 55.0% | |
| ! | TCCGGTTTGAGAGAGGTAGC+CGG | + | chr1_2:6532007-6532026 | Msa0052310:five_prime_UTR | 55.0% |
| TCCGGCTACCTCTCTCAAAC+CGG | - | chr1_2:6532011-6532030 | None:intergenic | 55.0% | |
| GCCGGAGACCGTAGTCAATA+TGG | + | chr1_2:6532025-6532044 | Msa0052310:exon | 55.0% | |
| GGCGCCGCTATTCAATCTCT+CGG | + | chr1_2:6532071-6532090 | Msa0052310:CDS | 55.0% | |
| !! | AGAAGCACTCGCCAGGAATG+AGG | - | chr1_2:6532308-6532327 | None:intergenic | 55.0% |
| GGGTCTCCCTCTTTCCTTTC+AGG | + | chr1_2:6532484-6532503 | Msa0052310:CDS | 55.0% | |
| GAGCTCACTAGCTGTCAGCT+TGG | + | chr1_2:6532783-6532802 | Msa0052310:intron | 55.0% | |
| TGGAGGGTTTAGGAGGGGAA+GGG | - | chr1_2:6533177-6533196 | None:intergenic | 55.0% | |
| ATGGAGGGTTTAGGAGGGGA+AGG | - | chr1_2:6533178-6533197 | None:intergenic | 55.0% | |
| ACAGGGTTGCTGCAAGTACG+TGG | - | chr1_2:6533717-6533736 | None:intergenic | 55.0% | |
| TTCCGCTGCACCATCACAGT+AGG | - | chr1_2:6533853-6533872 | None:intergenic | 55.0% | |
| TGGTGCAGCGGAAGTTGACA+TGG | + | chr1_2:6533860-6533879 | Msa0052310:CDS | 55.0% | |
| GACATGGCTCAATCTGTCCC+TGG | + | chr1_2:6533876-6533895 | Msa0052310:CDS | 55.0% | |
| GCTCAATCTGTCCCTGGTGA+AGG | + | chr1_2:6533882-6533901 | Msa0052310:CDS | 55.0% | |
| !! | GGTGCTGGTGACAAGGTTTG+TGG | + | chr1_2:6534065-6534084 | Msa0052310:CDS | 55.0% |
| GATACTCCATCCCTGAGGGT+GGG | - | chr1_2:6534370-6534389 | None:intergenic | 55.0% | |
| AGATACTCCATCCCTGAGGG+TGG | - | chr1_2:6534371-6534390 | None:intergenic | 55.0% | |
| CAAGCATCACGTTGTGCAGG+TGG | + | chr1_2:6535533-6535552 | Msa0052310:CDS | 55.0% | |
| ATTGACTGTTTCACCGGCGC+TGG | + | chr1_2:6535563-6535582 | Msa0052310:CDS | 55.0% | |
| ATGCATGCCTGAGGTTAGGG+TGG | + | chr1_2:6538117-6538136 | Msa0052310:intron | 55.0% | |
| TGCATGCCTGAGGTTAGGGT+GGG | + | chr1_2:6538118-6538137 | Msa0052310:intron | 55.0% | |
| TATAGGCCCACCCTAACCTC+AGG | - | chr1_2:6538127-6538146 | None:intergenic | 55.0% | |
| TTCCTATCTCCACCTTGGGG+TGG | + | chr1_2:6538249-6538268 | Msa0052310:CDS | 55.0% | |
| TAATCTGGTCCACCCCAAGG+TGG | - | chr1_2:6538261-6538280 | None:intergenic | 55.0% | |
| GCATAATCTGGTCCACCCCA+AGG | - | chr1_2:6538264-6538283 | None:intergenic | 55.0% | |
| GGGTGGACCAGATTATGCCA+AGG | + | chr1_2:6538266-6538285 | Msa0052310:CDS | 55.0% | |
| !! | GCTTAGACCGCATGATGGGT+AGG | + | chr1_2:6538314-6538333 | Msa0052310:intron | 55.0% |
| CTCTATCTGCCTCTCCACCA+TGG | + | chr1_2:6539089-6539108 | Msa0052310:CDS | 55.0% | |
| !! | GTTTCTGGTTCGGCCGGTTT+GGG | - | chr1_2:6541241-6541260 | None:intergenic | 55.0% |
| !! | TTAGCGGTTTCTGGTTCGGC+CGG | - | chr1_2:6541247-6541266 | None:intergenic | 55.0% |
| GGCGGCAATGTTTGCTTGGT+TGG | + | chr1_2:6541522-6541541 | Msa0052310:CDS | 55.0% | |
| GGCGCCTTCATAGTCGGAGT+CGG | - | chr1_2:6532057-6532076 | None:intergenic | 60.0% | |
| GGTTTAGGAGGGGAAGGGAG+GGG | - | chr1_2:6533172-6533191 | None:intergenic | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+GGG | - | chr1_2:6533173-6533192 | None:intergenic | 60.0% | |
| AGGGTTTAGGAGGGGAAGGG+AGG | - | chr1_2:6533174-6533193 | None:intergenic | 60.0% | |
| GCTGCAAGTACGTGGCTGCT+TGG | - | chr1_2:6533709-6533728 | None:intergenic | 60.0% | |
| !! | ACGACGATGGTGCTGCCACT+TGG | + | chr1_2:6534171-6534190 | Msa0052310:CDS | 60.0% |
| GTTAGCTGGCGACTGCCAAG+TGG | - | chr1_2:6534189-6534208 | None:intergenic | 60.0% | |
| TCTACATGGGACCCACCCTC+AGG | + | chr1_2:6534356-6534375 | Msa0052310:CDS | 60.0% | |
| CTACATGGGACCCACCCTCA+GGG | + | chr1_2:6534357-6534376 | Msa0052310:CDS | 60.0% | |
| GCTGAGATTGGAGTCGCTGC+TGG | + | chr1_2:6534533-6534552 | Msa0052310:CDS | 60.0% | |
| !! | ACTGTTTCACCGGCGCTGGT+GGG | + | chr1_2:6535567-6535586 | Msa0052310:CDS | 60.0% |
| GTCCACCCCAAGGTGGAGAT+AGG | - | chr1_2:6538254-6538273 | None:intergenic | 60.0% | |
| ! | CTCTAGCGACCATGGTGGAG+AGG | - | chr1_2:6539101-6539120 | None:intergenic | 60.0% |
| CTCTCCACCATGGTCGCTAG+AGG | + | chr1_2:6539099-6539118 | Msa0052310:CDS | 60.0% | |
| ! | TAGATGGGCTTGGAGGGGAG+AGG | + | chr1_2:6540425-6540444 | Msa0052310:intron | 60.0% |
| GACCGGGAACGAGAGGATGA+TGG | - | chr1_2:6541195-6541214 | None:intergenic | 60.0% | |
| TCATCCTCTCGTTCCCGGTC+CGG | + | chr1_2:6541195-6541214 | Msa0052310:intron | 60.0% | |
| ATAACCGGACCGGGAACGAG+AGG | - | chr1_2:6541202-6541221 | None:intergenic | 60.0% | |
| !! | GTTCGGCCGGTTTGGGTTTG+GGG | - | chr1_2:6541234-6541253 | None:intergenic | 60.0% |
| !! | GGTTCGGCCGGTTTGGGTTT+GGG | - | chr1_2:6541235-6541254 | None:intergenic | 60.0% |
| !! | TGGTTCGGCCGGTTTGGGTT+TGG | - | chr1_2:6541236-6541255 | None:intergenic | 60.0% |
| !! | GGTTTCTGGTTCGGCCGGTT+TGG | - | chr1_2:6541242-6541261 | None:intergenic | 60.0% |
| !! | CATTACGGCGCCGACTGGAT+CGG | - | chr1_2:6541288-6541307 | None:intergenic | 60.0% |
| !! | ACTTGCATTACGGCGCCGAC+TGG | - | chr1_2:6541293-6541312 | None:intergenic | 60.0% |
| ! | TTTTGTTACCAGGGCGGGCG+AGG | - | chr1_2:6541374-6541393 | None:intergenic | 60.0% |
| TAGGAGGGGAAGGGAGGGGA+GGG | - | chr1_2:6533168-6533187 | None:intergenic | 65.0% | |
| TTAGGAGGGGAAGGGAGGGG+AGG | - | chr1_2:6533169-6533188 | None:intergenic | 65.0% | |
| ATGGGACCCACCCTCAGGGA+TGG | + | chr1_2:6534361-6534380 | Msa0052310:CDS | 65.0% | |
| ! | GACTGTTTCACCGGCGCTGG+TGG | + | chr1_2:6535566-6535585 | Msa0052310:CDS | 65.0% |
| GATGGCATTCCCACCAGCGC+CGG | - | chr1_2:6535579-6535598 | None:intergenic | 65.0% | |
| ATGGGCTTGGAGGGGAGAGG+AGG | + | chr1_2:6540428-6540447 | Msa0052310:intron | 65.0% | |
| TGGGCTTGGAGGGGAGAGGA+GGG | + | chr1_2:6540429-6540448 | Msa0052310:intron | 65.0% | |
| !! | GGCCGGTTTGGGTTTGGGGA+TGG | - | chr1_2:6541230-6541249 | None:intergenic | 65.0% |
| ! | GGCGCGCTCCGGTTTGAGAG+AGG | + | chr1_2:6532000-6532019 | Msa0052310:five_prime_UTR | 70.0% |
| ! | GGGGTGGGGGAGCACATGAG+TGG | + | chr1_2:6537284-6537303 | Msa0052310:intron | 70.0% |
| GGGCTTGGAGGGGAGAGGAG+GGG | + | chr1_2:6540430-6540449 | Msa0052310:intron | 70.0% | |
| TGTTACCAGGGCGGGCGAGG+CGG | - | chr1_2:6541371-6541390 | None:intergenic | 70.0% | |
| ! | ACCAGGGCGGGCGAGGCGGC+CGG | - | chr1_2:6541367-6541386 | None:intergenic | 85.0% |
| ! | TCCGGCCGCCTCGCCCGCCC+TGG | + | chr1_2:6541363-6541382 | Msa0052310:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 6531896 | 6541614 | 6531896 | ID=Msa0052310;Name=Msa0052310 |
| chr1_2 | mRNA | 6531896 | 6541614 | 6531896 | ID=Msa0052310-mRNA-1;Parent=Msa0052310;Name=Msa0052310-mRNA-1;_AED=0.15;_eAED=0.15;_QI=148|0.7|0.81|0.81|1|1|11|0|736 |
| chr1_2 | exon | 6531896 | 6532126 | 6531896 | ID=Msa0052310-mRNA-1:exon:2143;Parent=Msa0052310-mRNA-1 |
| chr1_2 | exon | 6532239 | 6532315 | 6532239 | ID=Msa0052310-mRNA-1:exon:2144;Parent=Msa0052310-mRNA-1 |
| chr1_2 | exon | 6532423 | 6532517 | 6532423 | ID=Msa0052310-mRNA-1:exon:2145;Parent=Msa0052310-mRNA-1 |
| chr1_2 | exon | 6533666 | 6534690 | 6533666 | ID=Msa0052310-mRNA-1:exon:2146;Parent=Msa0052310-mRNA-1 |
| chr1_2 | exon | 6534864 | 6535033 | 6534864 | ID=Msa0052310-mRNA-1:exon:2147;Parent=Msa0052310-mRNA-1 |
| chr1_2 | exon | 6535381 | 6535612 | 6535381 | ID=Msa0052310-mRNA-1:exon:2148;Parent=Msa0052310-mRNA-1 |
| chr1_2 | exon | 6536698 | 6536745 | 6536698 | ID=Msa0052310-mRNA-1:exon:2149;Parent=Msa0052310-mRNA-1 |
| chr1_2 | exon | 6536823 | 6536958 | 6536823 | ID=Msa0052310-mRNA-1:exon:2150;Parent=Msa0052310-mRNA-1 |
| chr1_2 | exon | 6538237 | 6538331 | 6538237 | ID=Msa0052310-mRNA-1:exon:2151;Parent=Msa0052310-mRNA-1 |
| chr1_2 | exon | 6538997 | 6539120 | 6538997 | ID=Msa0052310-mRNA-1:exon:2152;Parent=Msa0052310-mRNA-1 |
| chr1_2 | exon | 6541489 | 6541614 | 6541489 | ID=Msa0052310-mRNA-1:exon:2153;Parent=Msa0052310-mRNA-1 |
| chr1_2 | five_prime_UTR | 6531896 | 6532043 | 6531896 | ID=Msa0052310-mRNA-1:five_prime_utr;Parent=Msa0052310-mRNA-1 |
| chr1_2 | CDS | 6532044 | 6532126 | 6532044 | ID=Msa0052310-mRNA-1:cds;Parent=Msa0052310-mRNA-1 |
| chr1_2 | CDS | 6532239 | 6532315 | 6532239 | ID=Msa0052310-mRNA-1:cds;Parent=Msa0052310-mRNA-1 |
| chr1_2 | CDS | 6532423 | 6532517 | 6532423 | ID=Msa0052310-mRNA-1:cds;Parent=Msa0052310-mRNA-1 |
| chr1_2 | CDS | 6533666 | 6534690 | 6533666 | ID=Msa0052310-mRNA-1:cds;Parent=Msa0052310-mRNA-1 |
| chr1_2 | CDS | 6534864 | 6535033 | 6534864 | ID=Msa0052310-mRNA-1:cds;Parent=Msa0052310-mRNA-1 |
| chr1_2 | CDS | 6535381 | 6535612 | 6535381 | ID=Msa0052310-mRNA-1:cds;Parent=Msa0052310-mRNA-1 |
| chr1_2 | CDS | 6536698 | 6536745 | 6536698 | ID=Msa0052310-mRNA-1:cds;Parent=Msa0052310-mRNA-1 |
| chr1_2 | CDS | 6536823 | 6536958 | 6536823 | ID=Msa0052310-mRNA-1:cds;Parent=Msa0052310-mRNA-1 |
| chr1_2 | CDS | 6538237 | 6538331 | 6538237 | ID=Msa0052310-mRNA-1:cds;Parent=Msa0052310-mRNA-1 |
| chr1_2 | CDS | 6538997 | 6539120 | 6538997 | ID=Msa0052310-mRNA-1:cds;Parent=Msa0052310-mRNA-1 |
| chr1_2 | CDS | 6541489 | 6541614 | 6541489 | ID=Msa0052310-mRNA-1:cds;Parent=Msa0052310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
