AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0026710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0026710 MtrunA17_Chr1g0153291 86.350 674 41 4 21 668 53 701 0.0 1137
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0026710 AT1G45231.2 42.922 438 152 9 253 665 160 524 1.14e-97 310
Msa0026710 AT1G30545.2 48.000 225 70 2 465 667 31 230 1.18e-65 216
Msa0026710 AT1G30550.1 46.429 224 73 2 465 666 19 217 1.27e-64 213
Msa0026710 AT1G30550.2 46.429 224 73 2 465 666 37 235 2.82e-64 213
Msa0026710 AT1G30545.1 37.762 143 42 2 547 667 2 119 8.68e-26 103

Find 181 sgRNAs with CRISPR-Local

Find 539 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTCTCCCTCTTTCCTTTC+AGG 0.117881 1_1:+50663516 Msa0026710:CDS
ATACAGATTGTGAGACTATT+TGG 0.181236 1_1:+50665179 Msa0026710:CDS
TCAATTGATTGTGGTGAATT+TGG 0.197179 1_1:+50665298 Msa0026710:CDS
CGTCTTGGCACCAAAGTTAA+AGG 0.213662 1_1:+50667969 Msa0026710:CDS
GTGGAGAAAGTTCATTTAAA+TGG 0.224358 1_1:+50670937 Msa0026710:CDS
TGGAGTCGCTGCTGGAAATT+TGG 0.230378 1_1:+50665573 Msa0026710:CDS
GTGTTATGGGATACTTTCTA+TGG 0.231393 1_1:+50665331 Msa0026710:CDS
ATGTTTGGATGAAGGATATA+AGG 0.266377 1_1:+50668419 Msa0026710:CDS
TATAACCGATAAGATAGTTT+AGG 0.272524 1_1:-50662924 None:intergenic
TGTCACCAGCACCTGTTAAA+TGG 0.276417 1_1:-50665087 None:intergenic
CTACTCACCGTTGTGCAAAT+TGG 0.278895 1_1:-50666630 None:intergenic
GAGCAAACAAATGAATGAAT+TGG 0.294987 1_1:+50663495 Msa0026710:CDS
TAAGATCAAAGTCACGGTTC+TGG 0.303686 1_1:-50665024 None:intergenic
TTGGAGATTGGATGGTGTTA+TGG 0.306890 1_1:+50665317 Msa0026710:CDS
AGAATCACTTCCCATGAGTT+TGG 0.319721 1_1:+50665246 Msa0026710:CDS
GATTTCAGATATGTTATGTT+TGG 0.328900 1_1:+50668404 Msa0026710:CDS
TGGTTGAAGTTGACATTTCT+TGG 0.332160 1_1:-50670083 None:intergenic
TCTTCAGCTAGTCTTTGTTC+TGG 0.336169 1_1:-50671070 None:intergenic
ATTGCACATGCCTCAGATAC+TGG 0.337936 1_1:+50665049 Msa0026710:CDS
TCAGATTTACTATCCAATTC+AGG 0.343225 1_1:-50665969 None:intergenic
TCGTCTACCAAGGTTTCTTC+AGG 0.344527 1_1:-50665508 None:intergenic
ATAACCGATAAGATAGTTTA+GGG 0.358427 1_1:-50662923 None:intergenic
TCAGCCCTAAACTATCTTAT+CGG 0.360963 1_1:+50662919 Msa0026710:five_prime_UTR
AACTTTAGCACCTTTAACTT+TGG 0.367248 1_1:-50667979 None:intergenic
TGTCTTCCTATCTCCACCTT+GGG 0.368653 1_1:+50669277 Msa0026710:CDS
TCATTTAGAGTTTCATCAAC+AGG 0.375630 1_1:-50664764 None:intergenic
TAGAAATGTGGACCAGTAAA+AGG 0.376722 1_1:+50664695 Msa0026710:intron
ATTGTTGCAGAATAAGCTTC+AGG 0.377435 1_1:-50666433 None:intergenic
GGTAATTGATACGCCTGAAT+TGG 0.379166 1_1:+50665956 Msa0026710:CDS
TGGAGATTGGATGGTGTTAT+GGG 0.383342 1_1:+50665318 Msa0026710:CDS
TGAAGCTCTAAAGTCATTAG+AGG 0.391197 1_1:+50665456 Msa0026710:CDS
AAGATCAAAGTCACGGTTCT+GGG 0.395925 1_1:-50665023 None:intergenic
ATTATCTTGTATATCAATGC+TGG 0.397234 1_1:+50664844 Msa0026710:CDS
AGGGCTGATGAAGGTTAGTA+AGG 0.397782 1_1:-50662904 None:intergenic
GCCGGAGACCGTAGTCAATA+TGG 0.402820 1_1:+50663027 Msa0026710:five_prime_UTR
GTCGCAACCTTGGCATAATC+TGG 0.408300 1_1:-50669305 None:intergenic
GCTGAGATTGGAGTCGCTGC+TGG 0.424048 1_1:+50665565 Msa0026710:CDS
CAAGGTTTGTGGGATAGAAC+TGG 0.427058 1_1:+50665108 Msa0026710:CDS
GATCAAATTGACTTCATAGT+TGG 0.427835 1_1:+50667937 Msa0026710:CDS
AGCAAACAAATGAATGAATT+GGG 0.428976 1_1:+50663496 Msa0026710:CDS
AATACCTAACGACGTGATCC+AGG 0.429384 1_1:-50665705 None:intergenic
TAAAAGAAAGCGGCGCGCTC+CGG 0.433840 1_1:+50662991 Msa0026710:five_prime_UTR
TCTGCTGGAAGCCATTTAAC+AGG 0.439865 1_1:+50665076 Msa0026710:CDS
TATACTATTAATCCTTTCCT+CGG 0.441008 1_1:-50664978 None:intergenic
GCCATATTGACTACGGTCTC+CGG 0.443709 1_1:-50663028 None:intergenic
TTGGTAGACGAGAACTTATC+AGG 0.445848 1_1:+50665520 Msa0026710:CDS
TGCTGCACTGGGTTTGCTAA+TGG 0.446709 1_1:+50664950 Msa0026710:CDS
GATATGTTATGTTTGGATGA+AGG 0.447524 1_1:+50668411 Msa0026710:CDS
ATTGTGGTGAATTTGGAGAT+TGG 0.448835 1_1:+50665305 Msa0026710:CDS
ATGTCACCCAAGTCTTTCTC+TGG 0.455587 1_1:+50663107 Msa0026710:CDS
GACTGTTTCACCGGCGCTGG+TGG 0.456267 1_1:+50666598 Msa0026710:CDS
TCTACATGGGACCCACCCTC+AGG 0.459782 1_1:+50665388 Msa0026710:CDS
GTTGCATATGACAGAGTTGA+TGG 0.460248 1_1:+50665274 Msa0026710:CDS
AGTGATTCTGATTCGTTAGC+TGG 0.461287 1_1:-50665232 None:intergenic
AAATGTCAACTTCAACCAAT+TGG 0.461325 1_1:+50670088 Msa0026710:CDS
GGGATGGAGTATCTAGCATT+TGG 0.461901 1_1:+50665409 Msa0026710:CDS
GAAGAGTATTCAGCTGAGAT+TGG 0.463111 1_1:+50665553 Msa0026710:CDS
GATAATTCAACATGCTGCAC+TGG 0.465684 1_1:+50664938 Msa0026710:CDS
TCCGGCTACCTCTCTCAAAC+CGG 0.469747 1_1:-50663010 None:intergenic
TTGTTCTTAGAGAGTTGCTC+AGG 0.483549 1_1:-50671133 None:intergenic
TTCTTTGCCTGAAAGGAAAG+AGG 0.484021 1_1:-50663523 None:intergenic
TGATAATGTGCAATAATCTC+TGG 0.484400 1_1:-50666544 None:intergenic
ATACCCTGGATCACGTCGTT+AGG 0.486600 1_1:+50665701 Msa0026710:CDS
TTATTCTCTAGATTTGATGA+TGG 0.486790 1_1:+50666484 Msa0026710:CDS
TCAGATACTGGAATCTCTGC+TGG 0.487274 1_1:+50665061 Msa0026710:CDS
AGTTGGTGACTTCTTCGTCT+TGG 0.487348 1_1:+50667954 Msa0026710:CDS
TGTTTGGATGAAGGATATAA+GGG 0.488254 1_1:+50668420 Msa0026710:CDS
ACAGTAATTGACTGTTTCAC+CGG 0.491412 1_1:+50666589 Msa0026710:CDS
TGCAACCCCTTCCAAACTCA+TGG 0.493145 1_1:-50665257 None:intergenic
GTCCACCCCAAGGTGGAGAT+AGG 0.493310 1_1:-50669283 None:intergenic
TTTGCTCAATTCCAAATCCT+CGG 0.493464 1_1:-50663479 None:intergenic
CAGCTAGTCTTTGTTCTGGA+AGG 0.495385 1_1:-50671066 None:intergenic
TATTTCAGTTGTACATGAGA+TGG 0.498573 1_1:+50670982 Msa0026710:exon
TTCCTTTCAGGCAAAGAATG+AGG 0.501644 1_1:+50663528 Msa0026710:CDS
TACCTCATTCTTTGCCTGAA+AGG 0.504941 1_1:-50663530 None:intergenic
CATCTGAATGATGAAGAGAT+TGG 0.506548 1_1:-50665624 None:intergenic
ATTGACTGTTTCACCGGCGC+TGG 0.506856 1_1:+50666595 Msa0026710:CDS
ATAGAGATAACTCTGCCAAT+TGG 0.508750 1_1:-50670103 None:intergenic
CTGTCTTCCTATCTCCACCT+TGG 0.509970 1_1:+50669276 Msa0026710:CDS
CTAATGGTGTTTCCGAGGAA+AGG 0.515247 1_1:+50664966 Msa0026710:CDS
TGAAGTTGACATTTCTTGGA+AGG 0.517744 1_1:-50670079 None:intergenic
CACTTCCCATGAGTTTGGAA+GGG 0.519103 1_1:+50665251 Msa0026710:CDS
CTAGCATAATCAATCTTCAA+TGG 0.520724 1_1:-50667886 None:intergenic
GAAGAATGCAGAGGTTACTT+AGG 0.523858 1_1:-50671361 None:intergenic
AGATAGTTTAGGGCTGATGA+AGG 0.527378 1_1:-50662913 None:intergenic
TGGAAGGAACATGACAACTC+TGG 0.528426 1_1:-50670063 None:intergenic
TTATCTTGTATATCAATGCT+GGG 0.528772 1_1:+50664845 Msa0026710:CDS
TTGCTCAATTCCAAATCCTC+GGG 0.531412 1_1:-50663478 None:intergenic
GCTGCAAGTACGTGGCTGCT+TGG 0.531513 1_1:-50664738 None:intergenic
TTCCTATCTCCACCTTGGGG+TGG 0.532270 1_1:+50669281 Msa0026710:CDS
AGATACTCCATCCCTGAGGG+TGG 0.532294 1_1:-50665400 None:intergenic
TCACTTCCCATGAGTTTGGA+AGG 0.534280 1_1:+50665250 Msa0026710:CDS
ACTTCCCATGAGTTTGGAAG+GGG 0.538055 1_1:+50665252 Msa0026710:CDS
CACAGTAGGATGATTCACTT+TGG 0.539774 1_1:-50664868 None:intergenic
TTCAGTTGTACATGAGATGG+AGG 0.540091 1_1:+50670985 Msa0026710:exon
GGAAGCCATTTAACAGGTGC+TGG 0.541054 1_1:+50665082 Msa0026710:CDS
TCAAAACAGACACTTCTACA+TGG 0.541812 1_1:+50665374 Msa0026710:CDS
ACTGTTTCACCGGCGCTGGT+GGG 0.542352 1_1:+50666599 Msa0026710:CDS
TGGTGAATTTGGAGATTGGA+TGG 0.548165 1_1:+50665309 Msa0026710:CDS
TGGAGTATCTAGCATTTGGT+GGG 0.549362 1_1:+50665413 Msa0026710:CDS
ATGGAGTATCTAGCATTTGG+TGG 0.551877 1_1:+50665412 Msa0026710:CDS
GACATGGCTCAATCTGTCCC+TGG 0.553310 1_1:+50664908 Msa0026710:CDS
GCTAGATTTATAAAAGAAAG+CGG 0.553632 1_1:+50662981 Msa0026710:five_prime_UTR
TATCAAGCATCACGTTGTGC+AGG 0.561730 1_1:+50666562 Msa0026710:CDS
ATAATTCAACATGCTGCACT+GGG 0.561985 1_1:+50664939 Msa0026710:CDS
CAAACAACCTGAAGAAACCT+TGG 0.563559 1_1:+50665501 Msa0026710:CDS
CATTGAAGATTGATTATGCT+AGG 0.564121 1_1:+50667887 Msa0026710:CDS
GCTCAATCTGTCCCTGGTGA+AGG 0.564856 1_1:+50664914 Msa0026710:CDS
ACGACGATGGTGCTGCCACT+TGG 0.565157 1_1:+50665203 Msa0026710:CDS
GGTGCTGGTGACAAGGTTTG+TGG 0.565223 1_1:+50665097 Msa0026710:CDS
TTTAACAGGTGCTGGTGACA+AGG 0.566075 1_1:+50665090 Msa0026710:CDS
GATGGCATTCCCACCAGCGC+CGG 0.573122 1_1:-50666608 None:intergenic
CTCTATCTGCCTCTCCACCA+TGG 0.573558 1_1:+50670120 Msa0026710:CDS
GGCACCGCTATTCAATCTCT+CGG 0.574013 1_1:+50663073 Msa0026710:CDS
GTGCTGGTGACAAGGTTTGT+GGG 0.579936 1_1:+50665098 Msa0026710:CDS
CATTTAGAGTTTCATCAACA+GGG 0.579943 1_1:-50664763 None:intergenic
CTGTTCTGTATCAAATACCC+TGG 0.582745 1_1:+50665687 Msa0026710:CDS
TGCTACAAGTGAATCAAGCA+AGG 0.583679 1_1:+50671033 Msa0026710:three_prime_UTR
GATGAAGGTTAGTAAGGAGT+AGG 0.584128 1_1:-50662898 None:intergenic
GTTGAATTATCTCCTTCACC+AGG 0.585632 1_1:-50664926 None:intergenic
TCTTTGCCTGAAAGGAAAGA+GGG 0.587850 1_1:-50663522 None:intergenic
ATGGGACCCACCCTCAGGGA+TGG 0.588910 1_1:+50665393 Msa0026710:CDS
CAAAACAGACACTTCTACAT+GGG 0.589849 1_1:+50665375 Msa0026710:CDS
GATACTCCATCCCTGAGGGT+GGG 0.590428 1_1:-50665399 None:intergenic
CTCTAGCGACCATGGTGGAG+AGG 0.591857 1_1:-50670129 None:intergenic
CTCTCCACCATGGTCGCTAG+AGG 0.592850 1_1:+50670130 Msa0026710:CDS
CAATCTTCAAGCTTCATCCA+TGG 0.592952 1_1:-50671161 None:intergenic
TGTTATGGGATACTTTCTAT+GGG 0.593869 1_1:+50665332 Msa0026710:CDS
GCATAATCTGGTCCACCCCA+AGG 0.596449 1_1:-50669293 None:intergenic
TCATACACCAACGGAAAACA+TGG 0.596879 1_1:+50665935 Msa0026710:CDS
CAAGCATCACGTTGTGCAGG+TGG 0.596897 1_1:+50666565 Msa0026710:CDS
GAAATTACCTCTAGCGACCA+TGG 0.600107 1_1:-50670137 None:intergenic
TAGTTACCAGAGAAAGACTT+GGG 0.602158 1_1:-50663113 None:intergenic
TCACCGTTGTGCAAATTGGA+TGG 0.602384 1_1:-50666626 None:intergenic
ATACCTAACGACGTGATCCA+GGG 0.603439 1_1:-50665704 None:intergenic
AATAGCGGTGCCTTCATAGT+CGG 0.606694 1_1:-50663062 None:intergenic
AAATGAAGTGAGTGCAGAGG+AGG 0.606828 1_1:+50664781 Msa0026710:CDS
AGCAGAGATTCCAGTATCTG+AGG 0.607282 1_1:-50665059 None:intergenic
GCTAGATACTCCATCCCTGA+GGG 0.607652 1_1:-50665403 None:intergenic
TCCGGTTTGAGAGAGGTAGC+CGG 0.608768 1_1:+50663009 Msa0026710:five_prime_UTR
ATCCTACTGTGATGGTGCAG+CGG 0.609489 1_1:+50664880 Msa0026710:CDS
GCAACCCCTTCCAAACTCAT+GGG 0.614097 1_1:-50665256 None:intergenic
TAATGCTGCTATTTATCGAG+TGG 0.614197 1_1:+50667912 Msa0026710:CDS
CTACATGGGACCCACCCTCA+GGG 0.614401 1_1:+50665389 Msa0026710:CDS
TTAGTTAGAAGCTTGTGATG+AGG 0.615096 1_1:-50671268 None:intergenic
GTTTGCTAATGGTGTTTCCG+AGG 0.615324 1_1:+50664961 Msa0026710:CDS
TGATAAGTTCTCGTCTACCA+AGG 0.615470 1_1:-50665518 None:intergenic
TCAGTTGTACATGAGATGGA+GGG 0.615577 1_1:+50670986 Msa0026710:exon
GGCGCGCTCCGGTTTGAGAG+AGG 0.616944 1_1:+50663002 Msa0026710:five_prime_UTR
CTTGAGAGAACTAGTTGCAA+CGG 0.617983 1_1:+50665652 Msa0026710:CDS
TGGTGCAGCGGAAGTTGACA+TGG 0.618529 1_1:+50664892 Msa0026710:CDS
AAATTATATTATGAAACTGA+AGG 0.620563 1_1:+50666044 Msa0026710:CDS
TTAGTTACCAGAGAAAGACT+TGG 0.620694 1_1:-50663114 None:intergenic
GGTTACTTAGGACACAAGCT+AGG 0.622269 1_1:-50671349 None:intergenic
ATCACCGACTCCGACTATGA+AGG 0.627378 1_1:+50663052 Msa0026710:exon
AGAAAGTGAAAAGAAAACAC+AGG 0.628636 1_1:+50666015 Msa0026710:CDS
TCTATCTTGTCATAGAAATG+TGG 0.633490 1_1:+50664683 Msa0026710:intron
GTCTTCCTATCTCCACCTTG+GGG 0.634884 1_1:+50669278 Msa0026710:CDS
AAGGTTTGTGGGATAGAACT+GGG 0.636682 1_1:+50665109 Msa0026710:CDS
TTGCATATGACAGAGTTGAT+GGG 0.643851 1_1:+50665275 Msa0026710:CDS
GGGTGGACCAGATTATGCCA+AGG 0.644458 1_1:+50669298 Msa0026710:CDS
ATGTTACAGGTGCAGACATG+TGG 0.644573 1_1:+50667846 Msa0026710:intron
ACAGGGTTGCTGCAAGTACG+TGG 0.644966 1_1:-50664746 None:intergenic
GTTGATGGGTCAATTGATTG+TGG 0.650295 1_1:+50665289 Msa0026710:CDS
TCTAAATGAAGTGAGTGCAG+AGG 0.654427 1_1:+50664778 Msa0026710:CDS
AGTGAATCATCCTACTGTGA+TGG 0.656530 1_1:+50664872 Msa0026710:CDS
TTGAATTATCTCCTTCACCA+GGG 0.659466 1_1:-50664925 None:intergenic
GGTGATCGCCATATTGACTA+CGG 0.659564 1_1:-50663035 None:intergenic
GGTGCCTTCATAGTCGGAGT+CGG 0.665032 1_1:-50663056 None:intergenic
TTCCGCTGCACCATCACAGT+AGG 0.666655 1_1:-50664882 None:intergenic
ATGCAGTCAAGCAACATCAG+AGG 0.667380 1_1:+50665908 Msa0026710:CDS
TGCTAGATACTCCATCCCTG+AGG 0.677604 1_1:-50665404 None:intergenic
ATGCCATCCAATTTGCACAA+CGG 0.679134 1_1:+50666623 Msa0026710:CDS
AGAGGTCGATCATACACCAA+CGG 0.685453 1_1:+50665926 Msa0026710:CDS
AAGTGAAAAGAAAACACAGG+CGG 0.687466 1_1:+50666018 Msa0026710:CDS
TAATCTGGTCCACCCCAAGG+TGG 0.694203 1_1:-50669290 None:intergenic
ACATGATAAGAAGAATGCAG+AGG 0.696371 1_1:-50671370 None:intergenic
GTTAGCTGGCGACTGCCAAG+TGG 0.706012 1_1:-50665218 None:intergenic
AGAACCGAGAGATTGAATAG+CGG 0.714623 1_1:-50663077 None:intergenic
GAGACTATTTGGAACGACGA+TGG 0.720881 1_1:+50665190 Msa0026710:CDS
ATTACCTCTAGCGACCATGG+TGG 0.725531 1_1:-50670134 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTTTTTGTAGTTTT+TGG + chr1_1:50667198-50667217 Msa0026710:intron 10.0%
!!! TTGATTCTTTTTTTTTTTTT+TGG + chr1_1:50667796-50667815 Msa0026710:intron 10.0%
!!! TATTTTGGATTTTTAAAAAT+AGG + chr1_1:50668022-50668041 Msa0026710:intron 10.0%
!!! TATATGAAACAATATTTTAT+TGG + chr1_1:50668294-50668313 Msa0026710:intron 10.0%
!!! ATATGAAACAATATTTTATT+GGG + chr1_1:50668295-50668314 Msa0026710:intron 10.0%
!!! AACTTATTATATGTTTTATA+TGG + chr1_1:50670845-50670864 Msa0026710:intron 10.0%
!!! TGTTTTATATTTTTGTAGAT+TGG + chr1_1:50663437-50663456 Msa0026710:intron 15.0%
!!! TACTTTTCTTTTTTAAACTA+CGG + chr1_1:50664046-50664065 Msa0026710:intron 15.0%
!! TGTCTAAATTATTACTATAA+AGG + chr1_1:50664316-50664335 Msa0026710:intron 15.0%
!! GTCTAAATTATTACTATAAA+GGG + chr1_1:50664317-50664336 Msa0026710:intron 15.0%
!! TCTAAATTATTACTATAAAG+GGG + chr1_1:50664318-50664337 Msa0026710:intron 15.0%
!! CTATTATAAAACTATAACTA+TGG - chr1_1:50664544-50664563 None:intergenic 15.0%
!! AAATTATATTATGAAACTGA+AGG + chr1_1:50666044-50666063 Msa0026710:CDS 15.0%
!! AGACCAAAAAAATTAATATT+CGG + chr1_1:50666777-50666796 Msa0026710:intron 15.0%
!!! TAACCGAATATTAATTTTTT+TGG - chr1_1:50666783-50666802 None:intergenic 15.0%
!! AACTACAAAAAAAAATTACA+GGG - chr1_1:50667196-50667215 None:intergenic 15.0%
!! AAACTACAAAAAAAAATTAC+AGG - chr1_1:50667197-50667216 None:intergenic 15.0%
!! GATTTATATGAAATGAATAT+TGG - chr1_1:50667587-50667606 None:intergenic 15.0%
!!! TATGAAACAATATTTTATTG+GGG + chr1_1:50668296-50668315 Msa0026710:intron 15.0%
!!! TTATTTCTCCTATTTATATA+TGG - chr1_1:50668504-50668523 None:intergenic 15.0%
!! TTAAATTTAATTAGAAGAGT+GGG - chr1_1:50669128-50669147 None:intergenic 15.0%
!! TTTAAATTTAATTAGAAGAG+TGG - chr1_1:50669129-50669148 None:intergenic 15.0%
!! AATTAAATTTACTTGTACTT+TGG + chr1_1:50669633-50669652 Msa0026710:intron 15.0%
!! ATTAAATTTACTTGTACTTT+GGG + chr1_1:50669634-50669653 Msa0026710:intron 15.0%
!! ATGTAAACAAAAAATGTATT+TGG + chr1_1:50670517-50670536 Msa0026710:intron 15.0%
!! TTCTCTGATTAATTAATGAA+AGG + chr1_1:50663358-50663377 Msa0026710:intron 20.0%
!!! GATTAATTAATGAAAGGTTT+TGG + chr1_1:50663364-50663383 Msa0026710:intron 20.0%
!!! GTTTTGTATGTATATTGAAA+AGG + chr1_1:50663398-50663417 Msa0026710:intron 20.0%
!!! AGTGTAATTTGTATAACTAT+AGG - chr1_1:50663556-50663575 None:intergenic 20.0%
!! TTCTACTATATCATAATATC+AGG - chr1_1:50663584-50663603 None:intergenic 20.0%
!! TTATGATATAGTAGAAAGTT+AGG + chr1_1:50663588-50663607 Msa0026710:intron 20.0%
!! CTAAATTATTACTATAAAGG+GGG + chr1_1:50664319-50664338 Msa0026710:intron 20.0%
!! ATAACCTGAAAACAATTTAT+AGG + chr1_1:50664416-50664435 Msa0026710:intron 20.0%
!! TCTTATATATATAAAGAGCA+GGG - chr1_1:50664627-50664646 None:intergenic 20.0%
!! ATCTTATATATATAAAGAGC+AGG - chr1_1:50664628-50664647 None:intergenic 20.0%
!!! TGAGATCAATGTTTTTTTAT+TGG + chr1_1:50666069-50666088 Msa0026710:intron 20.0%
!!! TAATGAATCTTTAAGTTAAC+TGG + chr1_1:50666138-50666157 Msa0026710:intron 20.0%
!!! TGATAAATTCATCTTGTTTT+TGG + chr1_1:50666681-50666700 Msa0026710:intron 20.0%
!! AGAAACAGTAAATATATTCT+TGG + chr1_1:50666858-50666877 Msa0026710:intron 20.0%
!! GAAACAGTAAATATATTCTT+GGG + chr1_1:50666859-50666878 Msa0026710:intron 20.0%
!! GTATACATCAATATTAAATC+CGG - chr1_1:50667044-50667063 None:intergenic 20.0%
!! AATTAAATTTGCAAATTACC+AGG - chr1_1:50667114-50667133 None:intergenic 20.0%
!! TGCAAATTTAATTCTCATAA+AGG + chr1_1:50667121-50667140 Msa0026710:intron 20.0%
!!! TTCAAAAACAATATTTTGCA+GGG - chr1_1:50667225-50667244 None:intergenic 20.0%
!!! TTTCAAAAACAATATTTTGC+AGG - chr1_1:50667226-50667245 None:intergenic 20.0%
!!! CCAAAAACAAAATATTTTAC+AGG - chr1_1:50667326-50667345 None:intergenic 20.0%
!!! CCTGTAAAATATTTTGTTTT+TGG + chr1_1:50667323-50667342 Msa0026710:intron 20.0%
!!! CAAAAACAAAATATTTTGCA+GGG - chr1_1:50667356-50667375 None:intergenic 20.0%
!!! TCAAAAACAAAATATTTTGC+AGG - chr1_1:50667357-50667376 None:intergenic 20.0%
!! ATTTATAAGAGGCTAAAATA+TGG - chr1_1:50667407-50667426 None:intergenic 20.0%
!! ACATATATAAACTAAAGACA+AGG - chr1_1:50667531-50667550 None:intergenic 20.0%
!! ATTACTAGACTAAAATAAAG+TGG - chr1_1:50667562-50667581 None:intergenic 20.0%
!! TTTAAGAGAGATAATAAACA+GGG - chr1_1:50668223-50668242 None:intergenic 20.0%
!!! TTTTAAGAGAGATAATAAAC+AGG - chr1_1:50668224-50668243 None:intergenic 20.0%
!!! ATGAAACAATATTTTATTGG+GGG + chr1_1:50668297-50668316 Msa0026710:intron 20.0%
!! TTATGAACTTATGATTATTC+AGG + chr1_1:50668454-50668473 Msa0026710:intron 20.0%
!! TATGAACTTATGATTATTCA+GGG + chr1_1:50668455-50668474 Msa0026710:intron 20.0%
!! TAAATTTAATTAGAAGAGTG+GGG - chr1_1:50669127-50669146 None:intergenic 20.0%
!!! GATCAACTATTTTTCTTAAA+GGG - chr1_1:50669434-50669453 None:intergenic 20.0%
!!! AGATCAACTATTTTTCTTAA+AGG - chr1_1:50669435-50669454 None:intergenic 20.0%
!!! CAATAACCATTTTATTCTTA+GGG - chr1_1:50669549-50669568 None:intergenic 20.0%
!!! TCAATAACCATTTTATTCTT+AGG - chr1_1:50669550-50669569 None:intergenic 20.0%
!! AAATTAAGACCTTAATTAGT+TGG + chr1_1:50669570-50669589 Msa0026710:intron 20.0%
!! AACTAGAAGATAAAATCAAA+AGG - chr1_1:50669715-50669734 None:intergenic 20.0%
!! TTCATATTCAAATGTTAAGA+GGG - chr1_1:50670214-50670233 None:intergenic 20.0%
!! ATTCATATTCAAATGTTAAG+AGG - chr1_1:50670215-50670234 None:intergenic 20.0%
!! TCAGAAATAAAGTGAAAATA+AGG + chr1_1:50670471-50670490 Msa0026710:intron 20.0%
!! TATACAATAAAACTCTTAGT+AGG - chr1_1:50670633-50670652 None:intergenic 20.0%
!!! TGATTTTATGTGAAGTATAT+TGG + chr1_1:50670813-50670832 Msa0026710:intron 20.0%
!!! AGATTTTTAAGTTATTCTTC+TGG + chr1_1:50671092-50671111 Msa0026710:three_prime_UTR 20.0%
!!! TTTCATTGATTACTGAAAAA+CGG + chr1_1:50671207-50671226 Msa0026710:three_prime_UTR 20.0%
! ATAACCGATAAGATAGTTTA+GGG - chr1_1:50662926-50662945 None:intergenic 25.0%
! TATAACCGATAAGATAGTTT+AGG - chr1_1:50662927-50662946 None:intergenic 25.0%
! GCTAGATTTATAAAAGAAAG+CGG + chr1_1:50662981-50663000 Msa0026710:five_prime_UTR 25.0%
! TGTAAAAAACAAGGGTAAAA+AGG - chr1_1:50663228-50663247 None:intergenic 25.0%
!!! TTTTTACCCTTGTTTTTTAC+AGG + chr1_1:50663227-50663246 Msa0026710:intron 25.0%
!!! TTTTACCCTTGTTTTTTACA+GGG + chr1_1:50663228-50663247 Msa0026710:intron 25.0%
!!! AAAGGTTTTGGATATTGAAA+GGG + chr1_1:50663376-50663395 Msa0026710:intron 25.0%
! AGCAAACAAATGAATGAATT+GGG + chr1_1:50663496-50663515 Msa0026710:CDS 25.0%
! GAATCAATTTAGTGTATGTT+TGG + chr1_1:50663658-50663677 Msa0026710:intron 25.0%
! AATTTAGTGTATGTTTGGAT+TGG + chr1_1:50663663-50663682 Msa0026710:intron 25.0%
! ACTTGAGTAAAATATGCATT+TGG - chr1_1:50663963-50663982 None:intergenic 25.0%
! TTAATTAAGCACTTGTGTAT+AGG + chr1_1:50664358-50664377 Msa0026710:intron 25.0%
!! TAAGCCTATAAATTGTTTTC+AGG - chr1_1:50664423-50664442 None:intergenic 25.0%
! AAGCTTATAAAAATAACCTG+AGG - chr1_1:50664448-50664467 None:intergenic 25.0%
!! AAAACTATAACTATGGCTTT+TGG - chr1_1:50664537-50664556 None:intergenic 25.0%
! GTATAAATGATAGAAGAGAA+GGG - chr1_1:50664605-50664624 None:intergenic 25.0%
! ATTATCTTGTATATCAATGC+TGG + chr1_1:50664844-50664863 Msa0026710:CDS 25.0%
! TTATCTTGTATATCAATGCT+GGG + chr1_1:50664845-50664864 Msa0026710:CDS 25.0%
! TATACTATTAATCCTTTCCT+CGG - chr1_1:50664981-50665000 None:intergenic 25.0%
!!! CAATTTTAAGATCAAAGTCA+CGG - chr1_1:50665033-50665052 None:intergenic 25.0%
!!! TCTGTATTTTTGAAAACAGA+TGG - chr1_1:50665166-50665185 None:intergenic 25.0%
! AGAGCAGATAAATATACATT+AGG - chr1_1:50665852-50665871 None:intergenic 25.0%
!!! TGCAAAACATGTAATTTGTT+AGG - chr1_1:50665875-50665894 None:intergenic 25.0%
! AGAAAATATTGTCATAGACT+TGG - chr1_1:50666166-50666185 None:intergenic 25.0%
!! GTCTATGACAATATTTTCTA+AGG + chr1_1:50666167-50666186 Msa0026710:intron 25.0%
! TAGTTAAATAGCTAGAATAC+TGG + chr1_1:50666245-50666264 Msa0026710:intron 25.0%
! ATTAATATCTAGCGTTACAT+TGG - chr1_1:50666305-50666324 None:intergenic 25.0%
! ATGAAAAATGTCCAATACAA+TGG - chr1_1:50666386-50666405 None:intergenic 25.0%
!! ATTTTTCATTTTGCAGATCT+CGG + chr1_1:50666397-50666416 Msa0026710:intron 25.0%
! CTGCAACAATTGAAAAATAT+TGG + chr1_1:50666446-50666465 Msa0026710:CDS 25.0%
! TTATTCTCTAGATTTGATGA+TGG + chr1_1:50666484-50666503 Msa0026710:CDS 25.0%
!!! ATTTGATGATGGTGTAAAAA+TGG + chr1_1:50666495-50666514 Msa0026710:CDS 25.0%
!!! ACATCAATTATTTCTGAGTT+TGG - chr1_1:50666747-50666766 None:intergenic 25.0%
!! GAAATAATTGATGTTTTCGT+AGG + chr1_1:50666753-50666772 Msa0026710:intron 25.0%
! TTAAGATTAATCTGTGCTTA+TGG + chr1_1:50666804-50666823 Msa0026710:intron 25.0%
!!! TAATCTCAATGGATTGTTTA+TGG + chr1_1:50666992-50667011 Msa0026710:intron 25.0%
!!! AATGTTTTTGTTTCACTCAA+TGG + chr1_1:50667064-50667083 Msa0026710:intron 25.0%
! TTCTCATAAAGGCTAAAATA+TGG + chr1_1:50667132-50667151 Msa0026710:intron 25.0%
!! TAAAGGCTAAAATATGGTTT+TGG + chr1_1:50667138-50667157 Msa0026710:intron 25.0%
!!! GGAACTTTTTTCTACAAAAT+GGG - chr1_1:50667305-50667324 None:intergenic 25.0%
!!! AGGAACTTTTTTCTACAAAA+TGG - chr1_1:50667306-50667325 None:intergenic 25.0%
! TATATAAACTAAAGACAAGG+AGG - chr1_1:50667528-50667547 None:intergenic 25.0%
!! TGATGACTAATCTAATTTGT+AGG + chr1_1:50667708-50667727 Msa0026710:intron 25.0%
! TTGATTCTATTTGATGTTAC+AGG + chr1_1:50667833-50667852 Msa0026710:intron 25.0%
!!! ACAGAATCATTTGATTTTCA+AGG - chr1_1:50668249-50668268 None:intergenic 25.0%
! TCATCTAGAAATAAACAGTA+CGG - chr1_1:50668359-50668378 None:intergenic 25.0%
! GATTTCAGATATGTTATGTT+TGG + chr1_1:50668404-50668423 Msa0026710:CDS 25.0%
! ATAGGAGAAATAAGAATGAA+AGG + chr1_1:50668511-50668530 Msa0026710:intron 25.0%
! AAGAATGAAAGGAATAGTTA+TGG + chr1_1:50668522-50668541 Msa0026710:intron 25.0%
! GAGAATATAATTCTTCACAA+AGG - chr1_1:50668578-50668597 None:intergenic 25.0%
! TTCTTTCATTTCAATTTCTC+TGG + chr1_1:50668643-50668662 Msa0026710:intron 25.0%
! GTCATAGAAAGAATAATTGA+TGG - chr1_1:50668682-50668701 None:intergenic 25.0%
!! CAGTATTTCTAACTAAACTT+TGG + chr1_1:50668810-50668829 Msa0026710:intron 25.0%
! TTATGAAGAATGGGAAATAA+TGG - chr1_1:50669017-50669036 None:intergenic 25.0%
! CATAAGCTATTATGAAGAAT+GGG - chr1_1:50669026-50669045 None:intergenic 25.0%
!! AATAGCTTATGCTTTTAGTA+TGG + chr1_1:50669035-50669054 Msa0026710:intron 25.0%
!!! CATCAATATTTTGGACATAT+AGG - chr1_1:50669176-50669195 None:intergenic 25.0%
!! AACGACTTTCATCAATATTT+TGG - chr1_1:50669185-50669204 None:intergenic 25.0%
!! AATATTGATGAAAGTCGTTT+TGG + chr1_1:50669186-50669205 Msa0026710:intron 25.0%
!!! ATATTGATGAAAGTCGTTTT+GGG + chr1_1:50669187-50669206 Msa0026710:intron 25.0%
! ATTATCCAAATTGTCCTTTA+TGG + chr1_1:50669514-50669533 Msa0026710:intron 25.0%
! TTATCCAAATTGTCCTTTAT+GGG + chr1_1:50669515-50669534 Msa0026710:intron 25.0%
! TTTGTTCCCTAAGAATAAAA+TGG + chr1_1:50669540-50669559 Msa0026710:intron 25.0%
! AGTATATACTACTGAGATAA+AGG + chr1_1:50670274-50670293 Msa0026710:intron 25.0%
! ACAAAATAAAAACAAGGTCA+TGG - chr1_1:50670334-50670353 None:intergenic 25.0%
! CAGGAAACAAAATAAAAACA+AGG - chr1_1:50670340-50670359 None:intergenic 25.0%
!!! AGAAACATTTTACTGTTTCT+TGG + chr1_1:50670432-50670451 Msa0026710:intron 25.0%
! CAAAATGATATTAAGACTAG+TGG - chr1_1:50670555-50670574 None:intergenic 25.0%
!!! TATCATTTTGTTTCATCAAC+TGG + chr1_1:50670565-50670584 Msa0026710:intron 25.0%
!!! TTTTAGTTGTAACACCTTTA+AGG - chr1_1:50670693-50670712 None:intergenic 25.0%
! TGACATAGATGTAAAATAGA+AGG + chr1_1:50670715-50670734 Msa0026710:intron 25.0%
! ATAGATGTAAAATAGAAGGA+CGG + chr1_1:50670719-50670738 Msa0026710:intron 25.0%
! ACTTCACATAAAATCACTAA+AGG - chr1_1:50670809-50670828 None:intergenic 25.0%
!!! CATAACTTCATTATTTTGGT+TGG + chr1_1:50670871-50670890 Msa0026710:intron 25.0%
! GATAGAAGAGTTAATTTACT+AGG - chr1_1:50670907-50670926 None:intergenic 25.0%
! GTAAATTAACTCTTCTATCA+TGG + chr1_1:50670908-50670927 Msa0026710:intron 25.0%
!!! GAAAGGTTTTGGATATTGAA+AGG + chr1_1:50663375-50663394 Msa0026710:intron 30.0%
GAGCAAACAAATGAATGAAT+TGG + chr1_1:50663495-50663514 Msa0026710:CDS 30.0%
GTTTCCATATTCAATGTCTA+AGG + chr1_1:50663610-50663629 Msa0026710:intron 30.0%
CTGTGAATTAGACGAAATAA+TGG - chr1_1:50663748-50663767 None:intergenic 30.0%
TATCAACAATCAAGCCTTAA+GGG - chr1_1:50664242-50664261 None:intergenic 30.0%
TTATCAACAATCAAGCCTTA+AGG - chr1_1:50664243-50664262 None:intergenic 30.0%
AATTTATAGGCTTATACCTC+AGG + chr1_1:50664429-50664448 Msa0026710:intron 30.0%
TATTCATTTGTGTATGTGCT+TGG - chr1_1:50664473-50664492 None:intergenic 30.0%
GGTATAAATGATAGAAGAGA+AGG - chr1_1:50664606-50664625 None:intergenic 30.0%
ATAGACCAACATATGATTGA+TGG - chr1_1:50664668-50664687 None:intergenic 30.0%
TCTATCTTGTCATAGAAATG+TGG + chr1_1:50664683-50664702 Msa0026710:intron 30.0%
! CATTTAGAGTTTCATCAACA+GGG - chr1_1:50664766-50664785 None:intergenic 30.0%
! TCATTTAGAGTTTCATCAAC+AGG - chr1_1:50664767-50664786 None:intergenic 30.0%
ATACAGATTGTGAGACTATT+TGG + chr1_1:50665179-50665198 Msa0026710:CDS 30.0%
TCAATTGATTGTGGTGAATT+TGG + chr1_1:50665298-50665317 Msa0026710:CDS 30.0%
TGTTATGGGATACTTTCTAT+GGG + chr1_1:50665332-50665351 Msa0026710:CDS 30.0%
! TTGTCGAGAAAAATTTGCTT+TGG - chr1_1:50665792-50665811 None:intergenic 30.0%
GCAAATAACAATATAAGTGC+TGG + chr1_1:50665825-50665844 Msa0026710:intron 30.0%
TCAGATTTACTATCCAATTC+AGG - chr1_1:50665972-50665991 None:intergenic 30.0%
AGAAAGTGAAAAGAAAACAC+AGG + chr1_1:50666015-50666034 Msa0026710:CDS 30.0%
CATATGTTGTTCAAAGTTGA+CGG + chr1_1:50666355-50666374 Msa0026710:intron 30.0%
!! TTGAAAAATATTGGTGTCAG+AGG + chr1_1:50666455-50666474 Msa0026710:CDS 30.0%
! TGATAATGTGCAATAATCTC+TGG - chr1_1:50666547-50666566 None:intergenic 30.0%
AATAAGAAGATACCATAGCA+AGG + chr1_1:50666834-50666853 Msa0026710:intron 30.0%
ATAAGAAGATACCATAGCAA+GGG + chr1_1:50666835-50666854 Msa0026710:intron 30.0%
ATTTGCCTTCATAATCTCAA+TGG + chr1_1:50666981-50667000 Msa0026710:intron 30.0%
ACAATCCATTGAGATTATGA+AGG - chr1_1:50666989-50667008 None:intergenic 30.0%
TCAATGGTGTTTGTTCTAAT+TGG + chr1_1:50667080-50667099 Msa0026710:intron 30.0%
!!! TTGTTTTTGAAAATAGTCCC+TGG + chr1_1:50667234-50667253 Msa0026710:intron 30.0%
ATGCAAAACATCACAAAAGT+GGG - chr1_1:50667261-50667280 None:intergenic 30.0%
TATGCAAAACATCACAAAAG+TGG - chr1_1:50667262-50667281 None:intergenic 30.0%
! AAGAGGCTAAAATATGGTTT+TGG - chr1_1:50667401-50667420 None:intergenic 30.0%
AGAATGGTGCAATTTATAAG+AGG - chr1_1:50667418-50667437 None:intergenic 30.0%
TAGGCATGACATTGTTATAT+TGG + chr1_1:50667727-50667746 Msa0026710:intron 30.0%
TCAAATACTTGAGTCTTTCT+TGG + chr1_1:50667750-50667769 Msa0026710:intron 30.0%
! GATCAAATTGACTTCATAGT+TGG + chr1_1:50667937-50667956 Msa0026710:CDS 30.0%
! AACTTTAGCACCTTTAACTT+TGG - chr1_1:50667982-50668001 None:intergenic 30.0%
AATCCAAAATAAATGCGACA+TGG - chr1_1:50668013-50668032 None:intergenic 30.0%
AAATAGGAGTAGCATTAGAA+AGG + chr1_1:50668038-50668057 Msa0026710:intron 30.0%
TTCCTAACTTTAACAAACCT+AGG + chr1_1:50668122-50668141 Msa0026710:intron 30.0%
!! TACCTAGGTTTGTTAAAGTT+AGG - chr1_1:50668127-50668146 None:intergenic 30.0%
AATCAAATGATTCTGTCAAC+TGG + chr1_1:50668253-50668272 Msa0026710:intron 30.0%
ATCAAATGATTCTGTCAACT+GGG + chr1_1:50668254-50668273 Msa0026710:intron 30.0%
! AAACAATATTTTATTGGGGG+TGG + chr1_1:50668300-50668319 Msa0026710:intron 30.0%
! AACAATATTTTATTGGGGGT+GGG + chr1_1:50668301-50668320 Msa0026710:intron 30.0%
AGAAATAAACAGTACGGTAA+TGG - chr1_1:50668353-50668372 None:intergenic 30.0%
GATATGTTATGTTTGGATGA+AGG + chr1_1:50668411-50668430 Msa0026710:CDS 30.0%
ATGTTTGGATGAAGGATATA+AGG + chr1_1:50668419-50668438 Msa0026710:CDS 30.0%
TGTTTGGATGAAGGATATAA+GGG + chr1_1:50668420-50668439 Msa0026710:CDS 30.0%
AGGGGATACCATATATAAAT+AGG + chr1_1:50668493-50668512 Msa0026710:intron 30.0%
! CATTTGATAGTTGTGATGAA+AGG + chr1_1:50668546-50668565 Msa0026710:intron 30.0%
AGAAAGATAGAAAGAGTCAA+GGG - chr1_1:50668627-50668646 None:intergenic 30.0%
AAGAAAGATAGAAAGAGTCA+AGG - chr1_1:50668628-50668647 None:intergenic 30.0%
ATGACTTAGTTGTTGCATTT+AGG + chr1_1:50668697-50668716 Msa0026710:intron 30.0%
TATAGCCCAGAAAAAATCTT+TGG - chr1_1:50668758-50668777 None:intergenic 30.0%
! ATGTTTCTACTTTCTAGTCA+TGG + chr1_1:50668867-50668886 Msa0026710:intron 30.0%
GCATAAGCTATTATGAAGAA+TGG - chr1_1:50669027-50669046 None:intergenic 30.0%
! AAATTTAAAATGCATGCCTG+AGG + chr1_1:50669140-50669159 Msa0026710:intron 30.0%
! TACCAACTGTATTTTCTTTC+AGG + chr1_1:50669247-50669266 Msa0026710:intron 30.0%
!! TATTTTTCTTAAAGGGTGTG+AGG - chr1_1:50669427-50669446 None:intergenic 30.0%
AATTCCCATAAAGGACAATT+TGG - chr1_1:50669522-50669541 None:intergenic 30.0%
TTAAGACCTTAATTAGTTGG+AGG + chr1_1:50669573-50669592 Msa0026710:intron 30.0%
TAAGACCTTAATTAGTTGGA+GGG + chr1_1:50669574-50669593 Msa0026710:intron 30.0%
TAATACCCTCCAACTAATTA+AGG - chr1_1:50669582-50669601 None:intergenic 30.0%
!! AATTAGTTGGAGGGTATTAT+AGG + chr1_1:50669583-50669602 Msa0026710:intron 30.0%
! ATGTTGCTTATATTCAAGAC+CGG + chr1_1:50669676-50669695 Msa0026710:intron 30.0%
AAAAGGAAAACTACTCAATC+CGG - chr1_1:50669698-50669717 None:intergenic 30.0%
CTTGTGCTATATGTTAATTG+TGG - chr1_1:50669907-50669926 None:intergenic 30.0%
ATGCAGCATTTAGTCAAAAT+GGG - chr1_1:50670000-50670019 None:intergenic 30.0%
AAATGTCAACTTCAACCAAT+TGG + chr1_1:50670088-50670107 Msa0026710:CDS 30.0%
AAGCATATCAAACAGACAAA+AGG - chr1_1:50670165-50670184 None:intergenic 30.0%
! CTGTTTGATATGCTTCATTT+TGG + chr1_1:50670170-50670189 Msa0026710:intron 30.0%
TATTGTCTACTATAGTGTGA+AGG + chr1_1:50670239-50670258 Msa0026710:intron 30.0%
ATTGTCTACTATAGTGTGAA+GGG + chr1_1:50670240-50670259 Msa0026710:intron 30.0%
!! ACGTACAAAACTTTGAAATC+AGG - chr1_1:50670359-50670378 None:intergenic 30.0%
TGTGAAAACTATTGCTTCTA+CGG - chr1_1:50670386-50670405 None:intergenic 30.0%
ATTACAACATCCAACCTTAA+AGG + chr1_1:50670676-50670695 Msa0026710:intron 30.0%
CATAAGGAGAAAAAAAAGCA+AGG + chr1_1:50670756-50670775 Msa0026710:intron 30.0%
TTTATGTGAAGTATATTGGC+AGG + chr1_1:50670817-50670836 Msa0026710:intron 30.0%
! GCAGCATAACTTCATTATTT+TGG + chr1_1:50670867-50670886 Msa0026710:intron 30.0%
GTGGAGAAAGTTCATTTAAA+TGG + chr1_1:50670937-50670956 Msa0026710:CDS 30.0%
TATTTCAGTTGTACATGAGA+TGG + chr1_1:50670982-50671001 Msa0026710:exon 30.0%
ATTACTGAAAAACGGTTACA+AGG + chr1_1:50671215-50671234 Msa0026710:three_prime_UTR 30.0%
TCAGCCCTAAACTATCTTAT+CGG + chr1_1:50662919-50662938 Msa0026710:five_prime_UTR 35.0%
TAGTTACCAGAGAAAGACTT+GGG - chr1_1:50663116-50663135 None:intergenic 35.0%
TTAGTTACCAGAGAAAGACT+TGG - chr1_1:50663117-50663136 None:intergenic 35.0%
ATCGTCCCTGTAAAAAACAA+GGG - chr1_1:50663236-50663255 None:intergenic 35.0%
! ATTGTTGTTGTGATCAGCTT+CGG - chr1_1:50663281-50663300 None:intergenic 35.0%
!! TGAGATTATTGTTTTACCCG+AGG + chr1_1:50663462-50663481 Msa0026710:CDS 35.0%
!! TATTGTTTTACCCGAGGATT+TGG + chr1_1:50663468-50663487 Msa0026710:CDS 35.0%
TTTGCTCAATTCCAAATCCT+CGG - chr1_1:50663482-50663501 None:intergenic 35.0%
CACTCCTTAGACATTGAATA+TGG - chr1_1:50663617-50663636 None:intergenic 35.0%
CAGTATATGTAGTGCATGTT+TGG - chr1_1:50663776-50663795 None:intergenic 35.0%
CAAACATGCACTACATATAC+TGG + chr1_1:50663774-50663793 Msa0026710:intron 35.0%
!! TACATATACTGGCTCCAATT+AGG + chr1_1:50663785-50663804 Msa0026710:intron 35.0%
TGAGCTAATAATAGCTAGCT+TGG - chr1_1:50664009-50664028 None:intergenic 35.0%
AGCTATTATTAGCTCACAAG+TGG + chr1_1:50664013-50664032 Msa0026710:intron 35.0%
GCTATTATTAGCTCACAAGT+GGG + chr1_1:50664014-50664033 Msa0026710:intron 35.0%
!! ATTACTATAAAGGGGGTGTT+TGG + chr1_1:50664326-50664345 Msa0026710:intron 35.0%
!! TTACTATAAAGGGGGTGTTT+GGG + chr1_1:50664327-50664346 Msa0026710:intron 35.0%
AAGTGCCATCAATCATATGT+TGG + chr1_1:50664660-50664679 Msa0026710:intron 35.0%
TAGAAATGTGGACCAGTAAA+AGG + chr1_1:50664695-50664714 Msa0026710:intron 35.0%
ACCAGTAAAAGGCAAAAAGA+AGG + chr1_1:50664706-50664725 Msa0026710:CDS 35.0%
CCAGTAAAAGGCAAAAAGAA+GGG + chr1_1:50664707-50664726 Msa0026710:CDS 35.0%
TTGAATTATCTCCTTCACCA+GGG - chr1_1:50664928-50664947 None:intergenic 35.0%
ATAATTCAACATGCTGCACT+GGG + chr1_1:50664939-50664958 Msa0026710:CDS 35.0%
! TTGCATATGACAGAGTTGAT+GGG + chr1_1:50665275-50665294 Msa0026710:CDS 35.0%
ATTGTGGTGAATTTGGAGAT+TGG + chr1_1:50665305-50665324 Msa0026710:CDS 35.0%
GTGTTATGGGATACTTTCTA+TGG + chr1_1:50665331-50665350 Msa0026710:CDS 35.0%
TCAAAACAGACACTTCTACA+TGG + chr1_1:50665374-50665393 Msa0026710:CDS 35.0%
CAAAACAGACACTTCTACAT+GGG + chr1_1:50665375-50665394 Msa0026710:CDS 35.0%
!! TGAAGCTCTAAAGTCATTAG+AGG + chr1_1:50665456-50665475 Msa0026710:CDS 35.0%
CATCTGAATGATGAAGAGAT+TGG - chr1_1:50665627-50665646 None:intergenic 35.0%
! TCAATTACCATGTTTTCCGT+TGG - chr1_1:50665945-50665964 None:intergenic 35.0%
AAGTGAAAAGAAAACACAGG+CGG + chr1_1:50666018-50666037 Msa0026710:CDS 35.0%
ACTGGACAAAACTTATATGC+AGG - chr1_1:50666329-50666348 None:intergenic 35.0%
CGTCAACTTTGAACAACATA+TGG - chr1_1:50666357-50666376 None:intergenic 35.0%
ATTGTTGCAGAATAAGCTTC+AGG - chr1_1:50666436-50666455 None:intergenic 35.0%
! TGATGGTGTAAAAATGGATG+AGG + chr1_1:50666501-50666520 Msa0026710:CDS 35.0%
TAAAAATGGATGAGGAAGGA+TGG + chr1_1:50666509-50666528 Msa0026710:CDS 35.0%
ACAGTAATTGACTGTTTCAC+CGG + chr1_1:50666589-50666608 Msa0026710:CDS 35.0%
! AATGTGTTCCAACTTGCTTT+GGG + chr1_1:50666909-50666928 Msa0026710:intron 35.0%
CAAATCCATTGAGAACATGA+AGG - chr1_1:50666966-50666985 None:intergenic 35.0%
! ATCACTCTTCACTCTTTTAC+CGG + chr1_1:50667022-50667041 Msa0026710:intron 35.0%
TTCTAATTGGATTGTTCACC+TGG + chr1_1:50667093-50667112 Msa0026710:intron 35.0%
TGCAAAACATCACAAAAGTG+GGG - chr1_1:50667260-50667279 None:intergenic 35.0%
! TTTGTGATGTTTTGCATACG+TGG + chr1_1:50667264-50667283 Msa0026710:intron 35.0%
TTGAAACCAGACATATTTGC+AGG + chr1_1:50667373-50667392 Msa0026710:intron 35.0%
TGAAACCAGACATATTTGCA+GGG + chr1_1:50667374-50667393 Msa0026710:intron 35.0%
AACAAATACTGCTCACAGAA+TGG - chr1_1:50667434-50667453 None:intergenic 35.0%
ATAAACTAAAGACAAGGAGG+AGG - chr1_1:50667525-50667544 None:intergenic 35.0%
TGTAGACAAGTGATTCATGT+TGG + chr1_1:50667650-50667669 Msa0026710:intron 35.0%
GTAGACAAGTGATTCATGTT+GGG + chr1_1:50667651-50667670 Msa0026710:intron 35.0%
! TAATGCTGCTATTTATCGAG+TGG + chr1_1:50667912-50667931 Msa0026710:CDS 35.0%
AATAAATGCGACATGGCTAA+AGG - chr1_1:50668006-50668025 None:intergenic 35.0%
! TAGCCATGTCGCATTTATTT+TGG + chr1_1:50668007-50668026 Msa0026710:intron 35.0%
ACAATTAGACGGATAAAGAC+GGG - chr1_1:50668089-50668108 None:intergenic 35.0%
CACAATTAGACGGATAAAGA+CGG - chr1_1:50668090-50668109 None:intergenic 35.0%
!! GGTTTGTTAAAGTTAGGAAG+AGG - chr1_1:50668121-50668140 None:intergenic 35.0%
GCATAGCACAAATATTACCT+AGG - chr1_1:50668142-50668161 None:intergenic 35.0%
! ACAATATTTTATTGGGGGTG+GGG + chr1_1:50668302-50668321 Msa0026710:intron 35.0%
TTATGATTATTCAGGGCAGT+TGG + chr1_1:50668462-50668481 Msa0026710:intron 35.0%
TTTACTATTTCCACTGCTTC+TGG + chr1_1:50668732-50668751 Msa0026710:intron 35.0%
!!! TTCTGGCCAAAGATTTTTTC+TGG + chr1_1:50668749-50668768 Msa0026710:intron 35.0%
!!! TCTGGCCAAAGATTTTTTCT+GGG + chr1_1:50668750-50668769 Msa0026710:intron 35.0%
GAAAGTAGAAACATGTCACA+TGG - chr1_1:50668861-50668880 None:intergenic 35.0%
TCTTTCCTTCAAGTCAAGTT+AGG + chr1_1:50668909-50668928 Msa0026710:intron 35.0%
! GCTTATGCTTTTAGTATGGT+TGG + chr1_1:50669039-50669058 Msa0026710:intron 35.0%
AGCCTGAAAGAAAATACAGT+TGG - chr1_1:50669252-50669271 None:intergenic 35.0%
TAGGGAACAAATTCCCATAA+AGG - chr1_1:50669531-50669550 None:intergenic 35.0%
TATGTAGAGCTATTGCATAG+CGG + chr1_1:50669759-50669778 Msa0026710:intron 35.0%
TTGTGAAATAGCTGCTATAG+CGG + chr1_1:50669828-50669847 Msa0026710:intron 35.0%
AGCATTTAGTCAAAATGGGA+GGG - chr1_1:50669996-50670015 None:intergenic 35.0%
GATGCAGCATTTAGTCAAAA+TGG - chr1_1:50670001-50670020 None:intergenic 35.0%
TGAAGTTGACATTTCTTGGA+AGG - chr1_1:50670082-50670101 None:intergenic 35.0%
TGGTTGAAGTTGACATTTCT+TGG - chr1_1:50670086-50670105 None:intergenic 35.0%
ATAGAGATAACTCTGCCAAT+TGG - chr1_1:50670106-50670125 None:intergenic 35.0%
!! AGTTGTAACACCTTTAAGGT+TGG - chr1_1:50670689-50670708 None:intergenic 35.0%
TTAGTTAGAAGCTTGTGATG+AGG - chr1_1:50671271-50671290 None:intergenic 35.0%
ACATGATAAGAAGAATGCAG+AGG - chr1_1:50671373-50671392 None:intergenic 35.0%
GATGAAGGTTAGTAAGGAGT+AGG - chr1_1:50662901-50662920 None:intergenic 40.0%
! AGATAGTTTAGGGCTGATGA+AGG - chr1_1:50662916-50662935 None:intergenic 40.0%
AGAACCGAGAGATTGAATAG+CGG - chr1_1:50663080-50663099 None:intergenic 40.0%
CATCGTCCCTGTAAAAAACA+AGG - chr1_1:50663237-50663256 None:intergenic 40.0%
!!! CTTGTTTTTTACAGGGACGA+TGG + chr1_1:50663235-50663254 Msa0026710:intron 40.0%
GATTCATCAAACCTCATTCC+TGG + chr1_1:50663304-50663323 Msa0026710:intron 40.0%
TTGCTCAATTCCAAATCCTC+GGG - chr1_1:50663481-50663500 None:intergenic 40.0%
TCTTTGCCTGAAAGGAAAGA+GGG - chr1_1:50663525-50663544 None:intergenic 40.0%
TTCTTTGCCTGAAAGGAAAG+AGG - chr1_1:50663526-50663545 None:intergenic 40.0%
TTCCTTTCAGGCAAAGAATG+AGG + chr1_1:50663528-50663547 Msa0026710:CDS 40.0%
TACCTCATTCTTTGCCTGAA+AGG - chr1_1:50663533-50663552 None:intergenic 40.0%
CGCTGAGTTTCACAGAATTA+CGG + chr1_1:50663688-50663707 Msa0026710:intron 40.0%
! CCCTTCTTTTTGCCTTTTAC+TGG - chr1_1:50664710-50664729 None:intergenic 40.0%
TCTAAATGAAGTGAGTGCAG+AGG + chr1_1:50664778-50664797 Msa0026710:CDS 40.0%
CACAGTAGGATGATTCACTT+TGG - chr1_1:50664871-50664890 None:intergenic 40.0%
AGTGAATCATCCTACTGTGA+TGG + chr1_1:50664872-50664891 Msa0026710:CDS 40.0%
GTTGAATTATCTCCTTCACC+AGG - chr1_1:50664929-50664948 None:intergenic 40.0%
GATAATTCAACATGCTGCAC+TGG + chr1_1:50664938-50664957 Msa0026710:CDS 40.0%
AAGATCAAAGTCACGGTTCT+GGG - chr1_1:50665026-50665045 None:intergenic 40.0%
TAAGATCAAAGTCACGGTTC+TGG - chr1_1:50665027-50665046 None:intergenic 40.0%
AAGGTTTGTGGGATAGAACT+GGG + chr1_1:50665109-50665128 Msa0026710:CDS 40.0%
! AGTGATTCTGATTCGTTAGC+TGG - chr1_1:50665235-50665254 None:intergenic 40.0%
AGAATCACTTCCCATGAGTT+TGG + chr1_1:50665246-50665265 Msa0026710:CDS 40.0%
GTTGCATATGACAGAGTTGA+TGG + chr1_1:50665274-50665293 Msa0026710:CDS 40.0%
! GTTGATGGGTCAATTGATTG+TGG + chr1_1:50665289-50665308 Msa0026710:CDS 40.0%
TGGTGAATTTGGAGATTGGA+TGG + chr1_1:50665309-50665328 Msa0026710:CDS 40.0%
! TTGGAGATTGGATGGTGTTA+TGG + chr1_1:50665317-50665336 Msa0026710:CDS 40.0%
!! TGGAGATTGGATGGTGTTAT+GGG + chr1_1:50665318-50665337 Msa0026710:CDS 40.0%
! ATGGAGTATCTAGCATTTGG+TGG + chr1_1:50665412-50665431 Msa0026710:CDS 40.0%
! TGGAGTATCTAGCATTTGGT+GGG + chr1_1:50665413-50665432 Msa0026710:CDS 40.0%
CAAACAACCTGAAGAAACCT+TGG + chr1_1:50665501-50665520 Msa0026710:CDS 40.0%
TGATAAGTTCTCGTCTACCA+AGG - chr1_1:50665521-50665540 None:intergenic 40.0%
TTGGTAGACGAGAACTTATC+AGG + chr1_1:50665520-50665539 Msa0026710:CDS 40.0%
!! GAAGAGTATTCAGCTGAGAT+TGG + chr1_1:50665553-50665572 Msa0026710:CDS 40.0%
CTTGAGAGAACTAGTTGCAA+CGG + chr1_1:50665652-50665671 Msa0026710:CDS 40.0%
CTGTTCTGTATCAAATACCC+TGG + chr1_1:50665687-50665706 Msa0026710:CDS 40.0%
TCATACACCAACGGAAAACA+TGG + chr1_1:50665935-50665954 Msa0026710:CDS 40.0%
GGTAATTGATACGCCTGAAT+TGG + chr1_1:50665956-50665975 Msa0026710:CDS 40.0%
GAATAGCAACATACTGCAGA+AGG - chr1_1:50666118-50666137 None:intergenic 40.0%
GGTGTAAAAATGGATGAGGA+AGG + chr1_1:50666505-50666524 Msa0026710:CDS 40.0%
ATGCCATCCAATTTGCACAA+CGG + chr1_1:50666623-50666642 Msa0026710:CDS 40.0%
! TTACTGTTTCTCCCTTGCTA+TGG - chr1_1:50666849-50666868 None:intergenic 40.0%
! CAATGTGTTCCAACTTGCTT+TGG + chr1_1:50666908-50666927 Msa0026710:intron 40.0%
ATACTGAACCCAAAGCAAGT+TGG - chr1_1:50666920-50666939 None:intergenic 40.0%
!! GAACATGAAGGCACTCATAT+AGG - chr1_1:50666954-50666973 None:intergenic 40.0%
CAAAACGAGGCATATTTGCA+GGG - chr1_1:50667165-50667184 None:intergenic 40.0%
GTGTGATTGTATGCTTGCAT+CGG + chr1_1:50667466-50667485 Msa0026710:intron 40.0%
GAGGAGGACAATATGAATGA+TGG - chr1_1:50667509-50667528 None:intergenic 40.0%
ACTTGAGTCTTTCTTGGAGA+AGG + chr1_1:50667756-50667775 Msa0026710:intron 40.0%
AAAGGCAAGCATAAAACGTC+AGG + chr1_1:50668056-50668075 Msa0026710:intron 40.0%
GGCAAGAGATCACAATTAGA+CGG - chr1_1:50668100-50668119 None:intergenic 40.0%
TCATCAAGAGGATACAGATG+AGG - chr1_1:50668191-50668210 None:intergenic 40.0%
! CAATATTTTATTGGGGGTGG+GGG + chr1_1:50668303-50668322 Msa0026710:intron 40.0%
AATAATTGATGGAGCGCGTT+AGG - chr1_1:50668671-50668690 None:intergenic 40.0%
ACATGTCACATGGAACTCTT+GGG - chr1_1:50668851-50668870 None:intergenic 40.0%
AACATGTCACATGGAACTCT+TGG - chr1_1:50668852-50668871 None:intergenic 40.0%
TTCCTTCAAGTCAAGTTAGG+AGG + chr1_1:50668912-50668931 Msa0026710:intron 40.0%
GTATGCTTCTTTGACCATCA+AGG + chr1_1:50669077-50669096 Msa0026710:intron 40.0%
TAAAATGCATGCCTGAGGTT+AGG + chr1_1:50669145-50669164 Msa0026710:intron 40.0%
AAAATGCATGCCTGAGGTTA+GGG + chr1_1:50669146-50669165 Msa0026710:intron 40.0%
CATATCATAAGTCGCAACCT+TGG - chr1_1:50669318-50669337 None:intergenic 40.0%
GCTATAGCAATACTGCATAG+TGG + chr1_1:50669852-50669871 Msa0026710:intron 40.0%
CAGCATTTAGTCAAAATGGG+AGG - chr1_1:50669997-50670016 None:intergenic 40.0%
! TACTCTGTTCAGTGTTGCTA+AGG + chr1_1:50670031-50670050 Msa0026710:intron 40.0%
TTGTTTGAACTTCAACCGCT+TGG + chr1_1:50670606-50670625 Msa0026710:intron 40.0%
TGTTTGAACTTCAACCGCTT+GGG + chr1_1:50670607-50670626 Msa0026710:intron 40.0%
GGAACACTCATGTACACATA+AGG + chr1_1:50670740-50670759 Msa0026710:intron 40.0%
TGTGAAGTATATTGGCAGGT+AGG + chr1_1:50670821-50670840 Msa0026710:intron 40.0%
GTGAAGTATATTGGCAGGTA+GGG + chr1_1:50670822-50670841 Msa0026710:intron 40.0%
AACTCTTCTATCATGGTGAC+AGG + chr1_1:50670915-50670934 Msa0026710:intron 40.0%
TTCAGTTGTACATGAGATGG+AGG + chr1_1:50670985-50671004 Msa0026710:exon 40.0%
TCAGTTGTACATGAGATGGA+GGG + chr1_1:50670986-50671005 Msa0026710:exon 40.0%
TGCTACAAGTGAATCAAGCA+AGG + chr1_1:50671033-50671052 Msa0026710:three_prime_UTR 40.0%
!! TCTTCAGCTAGTCTTTGTTC+TGG - chr1_1:50671073-50671092 None:intergenic 40.0%
TTGTTCTTAGAGAGTTGCTC+AGG - chr1_1:50671136-50671155 None:intergenic 40.0%
! CTCTAAGAACAAAAACGCCA+TGG + chr1_1:50671144-50671163 Msa0026710:three_prime_UTR 40.0%
CAATCTTCAAGCTTCATCCA+TGG - chr1_1:50671164-50671183 None:intergenic 40.0%
GAAGAATGCAGAGGTTACTT+AGG - chr1_1:50671364-50671383 None:intergenic 40.0%
AGGGCTGATGAAGGTTAGTA+AGG - chr1_1:50662907-50662926 None:intergenic 45.0%
! GGTGATCGCCATATTGACTA+CGG - chr1_1:50663038-50663057 None:intergenic 45.0%
AATAGCGGTGCCTTCATAGT+CGG - chr1_1:50663065-50663084 None:intergenic 45.0%
ATGTCACCCAAGTCTTTCTC+TGG + chr1_1:50663107-50663126 Msa0026710:CDS 45.0%
CTTCGGAAGATGGTTGAACT+TGG - chr1_1:50663264-50663283 None:intergenic 45.0%
TTGTGATCAGCTTCGGAAGA+TGG - chr1_1:50663274-50663293 None:intergenic 45.0%
!! AAGAATGAGAAGCACTAGCC+AGG - chr1_1:50663325-50663344 None:intergenic 45.0%
! GAGTGACAGTGTTCAAGTTC+TGG + chr1_1:50663632-50663651 Msa0026710:intron 45.0%
AGAATTACGGTGTAGCACTC+TGG + chr1_1:50663701-50663720 Msa0026710:intron 45.0%
TGAGCTCAGAGTAGCCTAAT+TGG - chr1_1:50663802-50663821 None:intergenic 45.0%
CGCTCACTATCTAAGTTGCT+GGG - chr1_1:50663866-50663885 None:intergenic 45.0%
TCGCTCACTATCTAAGTTGC+TGG - chr1_1:50663867-50663886 None:intergenic 45.0%
CTTAGATAGTGAGCGAAGCT+CGG + chr1_1:50663871-50663890 Msa0026710:intron 45.0%
TTTGGATGGAGGGTTTAGGA+GGG - chr1_1:50664215-50664234 None:intergenic 45.0%
TGTGTTTGGATGGAGGGTTT+AGG - chr1_1:50664219-50664238 None:intergenic 45.0%
! TAAGGGTGTGTTTGGATGGA+GGG - chr1_1:50664225-50664244 None:intergenic 45.0%
! TTAAGGGTGTGTTTGGATGG+AGG - chr1_1:50664226-50664245 None:intergenic 45.0%
TCCATCCAAACACACCCTTA+AGG + chr1_1:50664225-50664244 Msa0026710:intron 45.0%
! TCAAGCCTTAAGGGTGTGTT+TGG - chr1_1:50664233-50664252 None:intergenic 45.0%
AAATGAAGTGAGTGCAGAGG+AGG + chr1_1:50664781-50664800 Msa0026710:CDS 45.0%
! GTTTGCTAATGGTGTTTCCG+AGG + chr1_1:50664961-50664980 Msa0026710:CDS 45.0%
CTAATGGTGTTTCCGAGGAA+AGG + chr1_1:50664966-50664985 Msa0026710:CDS 45.0%
ATTGCACATGCCTCAGATAC+TGG + chr1_1:50665049-50665068 Msa0026710:CDS 45.0%
AGCAGAGATTCCAGTATCTG+AGG - chr1_1:50665062-50665081 None:intergenic 45.0%
TCAGATACTGGAATCTCTGC+TGG + chr1_1:50665061-50665080 Msa0026710:CDS 45.0%
TCTGCTGGAAGCCATTTAAC+AGG + chr1_1:50665076-50665095 Msa0026710:CDS 45.0%
TGTCACCAGCACCTGTTAAA+TGG - chr1_1:50665090-50665109 None:intergenic 45.0%
!! TTTAACAGGTGCTGGTGACA+AGG + chr1_1:50665090-50665109 Msa0026710:CDS 45.0%
CAAGGTTTGTGGGATAGAAC+TGG + chr1_1:50665108-50665127 Msa0026710:CDS 45.0%
! GAGACTATTTGGAACGACGA+TGG + chr1_1:50665190-50665209 Msa0026710:CDS 45.0%
TCACTTCCCATGAGTTTGGA+AGG + chr1_1:50665250-50665269 Msa0026710:CDS 45.0%
CACTTCCCATGAGTTTGGAA+GGG + chr1_1:50665251-50665270 Msa0026710:CDS 45.0%
ACTTCCCATGAGTTTGGAAG+GGG + chr1_1:50665252-50665271 Msa0026710:CDS 45.0%
! GGGATGGAGTATCTAGCATT+TGG + chr1_1:50665409-50665428 Msa0026710:CDS 45.0%
TCGTCTACCAAGGTTTCTTC+AGG - chr1_1:50665511-50665530 None:intergenic 45.0%
ATACCTAACGACGTGATCCA+GGG - chr1_1:50665707-50665726 None:intergenic 45.0%
AATACCTAACGACGTGATCC+AGG - chr1_1:50665708-50665727 None:intergenic 45.0%
ATGCAGTCAAGCAACATCAG+AGG + chr1_1:50665908-50665927 Msa0026710:CDS 45.0%
AGAGGTCGATCATACACCAA+CGG + chr1_1:50665926-50665945 Msa0026710:CDS 45.0%
GAACAACATATGGCAGCTAC+TGG - chr1_1:50666347-50666366 None:intergenic 45.0%
TGACGGCGATACCATTGTAT+TGG + chr1_1:50666372-50666391 Msa0026710:intron 45.0%
TATCAAGCATCACGTTGTGC+AGG + chr1_1:50666562-50666581 Msa0026710:CDS 45.0%
TCACCGTTGTGCAAATTGGA+TGG - chr1_1:50666629-50666648 None:intergenic 45.0%
CTACTCACCGTTGTGCAAAT+TGG - chr1_1:50666633-50666652 None:intergenic 45.0%
ATTTGCACAACGGTGAGTAG+TGG + chr1_1:50666633-50666652 Msa0026710:intron 45.0%
TTTGCACAACGGTGAGTAGT+GGG + chr1_1:50666634-50666653 Msa0026710:intron 45.0%
GAGTGCCTTCATGTTCTCAA+TGG + chr1_1:50666958-50666977 Msa0026710:intron 45.0%
CCAAAACGAGGCATATTTGC+AGG - chr1_1:50667166-50667185 None:intergenic 45.0%
! CCTGCAAATATGCCTCGTTT+TGG + chr1_1:50667163-50667182 Msa0026710:intron 45.0%
CAGGGACTAAAACCAAAACG+AGG - chr1_1:50667178-50667197 None:intergenic 45.0%
TTGGTCCCTGCAAATATGTC+TGG - chr1_1:50667382-50667401 None:intergenic 45.0%
ATGTTACAGGTGCAGACATG+TGG + chr1_1:50667846-50667865 Msa0026710:intron 45.0%
!! AGTTGGTGACTTCTTCGTCT+TGG + chr1_1:50667954-50667973 Msa0026710:CDS 45.0%
CGTCTTGGCACCAAAGTTAA+AGG + chr1_1:50667969-50667988 Msa0026710:CDS 45.0%
! TGCTATGCGCTGTTGCTTAT+TGG + chr1_1:50668154-50668173 Msa0026710:intron 45.0%
GGGAGATCATGATCATCAAG+AGG - chr1_1:50668203-50668222 None:intergenic 45.0%
ATTCTGTCAACTGGGATGTC+AGG + chr1_1:50668262-50668281 Msa0026710:intron 45.0%
! AGGGCAGTTGGTTAGTTAGA+GGG + chr1_1:50668474-50668493 Msa0026710:intron 45.0%
AAATCTTTGGCCAGAAGCAG+TGG - chr1_1:50668745-50668764 None:intergenic 45.0%
TCACATGGAACTCTTGGGAT+AGG - chr1_1:50668846-50668865 None:intergenic 45.0%
! TGCCTCCTAACTTGACTTGA+AGG - chr1_1:50668917-50668936 None:intergenic 45.0%
TCTTTGACCATCAAGGTCTC+CGG + chr1_1:50669084-50669103 Msa0026710:intron 45.0%
GGACAGTAAGGATTTGATCC+CGG - chr1_1:50669106-50669125 None:intergenic 45.0%
TTAGAAGAGTGGGGACAGTA+AGG - chr1_1:50669118-50669137 None:intergenic 45.0%
TGTCTTCCTATCTCCACCTT+GGG + chr1_1:50669277-50669296 Msa0026710:CDS 45.0%
ACAATGCTTAGACCGCATGA+TGG + chr1_1:50669341-50669360 Msa0026710:intron 45.0%
CAATGCTTAGACCGCATGAT+GGG + chr1_1:50669342-50669361 Msa0026710:intron 45.0%
TGGAAGGAACATGACAACTC+TGG - chr1_1:50670066-50670085 None:intergenic 45.0%
GAAATTACCTCTAGCGACCA+TGG - chr1_1:50670140-50670159 None:intergenic 45.0%
!! CTATAGTGTGAAGGGTGTTG+TGG + chr1_1:50670248-50670267 Msa0026710:intron 45.0%
AAACTCTTAGTAGGCCCAAG+CGG - chr1_1:50670624-50670643 None:intergenic 45.0%
TCTTCTATCATGGTGACAGG+TGG + chr1_1:50670918-50670937 Msa0026710:intron 45.0%
!! CAGCTAGTCTTTGTTCTGGA+AGG - chr1_1:50671069-50671088 None:intergenic 45.0%
GGTTACTTAGGACACAAGCT+AGG - chr1_1:50671352-50671371 None:intergenic 45.0%
!! ATAAATTCAATAATATTTAT+AGG + chr1_1:50664275-50664294 Msa0026710:intron 5.0%
!! ATATAAATCTTAATTATAAA+CGG + chr1_1:50667598-50667617 Msa0026710:intron 5.0%
! GCCATATTGACTACGGTCTC+CGG - chr1_1:50663031-50663050 None:intergenic 50.0%
!! ATCACCGACTCCGACTATGA+AGG + chr1_1:50663052-50663071 Msa0026710:exon 50.0%
GGCACCGCTATTCAATCTCT+CGG + chr1_1:50663073-50663092 Msa0026710:CDS 50.0%
!! AGAAGCACTAGCCAGGAATG+AGG - chr1_1:50663318-50663337 None:intergenic 50.0%
TCTAAGTTGCTGGGCAGCAA+AGG - chr1_1:50663857-50663876 None:intergenic 50.0%
TTGGATGGAGGGTTTAGGAG+GGG - chr1_1:50664214-50664233 None:intergenic 50.0%
GTTTGGATGGAGGGTTTAGG+AGG - chr1_1:50664216-50664235 None:intergenic 50.0%
! GCCTTAAGGGTGTGTTTGGA+TGG - chr1_1:50664229-50664248 None:intergenic 50.0%
! ATCCTACTGTGATGGTGCAG+CGG + chr1_1:50664880-50664899 Msa0026710:CDS 50.0%
!! TGCTGCACTGGGTTTGCTAA+TGG + chr1_1:50664950-50664969 Msa0026710:CDS 50.0%
GGAAGCCATTTAACAGGTGC+TGG + chr1_1:50665082-50665101 Msa0026710:CDS 50.0%
! GTGCTGGTGACAAGGTTTGT+GGG + chr1_1:50665098-50665117 Msa0026710:CDS 50.0%
GCAACCCCTTCCAAACTCAT+GGG - chr1_1:50665259-50665278 None:intergenic 50.0%
TGCAACCCCTTCCAAACTCA+TGG - chr1_1:50665260-50665279 None:intergenic 50.0%
GCTAGATACTCCATCCCTGA+GGG - chr1_1:50665406-50665425 None:intergenic 50.0%
TGCTAGATACTCCATCCCTG+AGG - chr1_1:50665407-50665426 None:intergenic 50.0%
TGGAGTCGCTGCTGGAAATT+TGG + chr1_1:50665573-50665592 Msa0026710:CDS 50.0%
ATACCCTGGATCACGTCGTT+AGG + chr1_1:50665701-50665720 Msa0026710:CDS 50.0%
ACATCACAAAAGTGGGGCCA+GGG - chr1_1:50667254-50667273 None:intergenic 50.0%
AACATCACAAAAGTGGGGCC+AGG - chr1_1:50667255-50667274 None:intergenic 50.0%
! CAGGGCAGTTGGTTAGTTAG+AGG + chr1_1:50668473-50668492 Msa0026710:intron 50.0%
! GGGCAGTTGGTTAGTTAGAG+GGG + chr1_1:50668475-50668494 Msa0026710:intron 50.0%
CTTTGACCATCAAGGTCTCC+GGG + chr1_1:50669085-50669104 Msa0026710:intron 50.0%
TTTGATCCCGGAGACCTTGA+TGG - chr1_1:50669094-50669113 None:intergenic 50.0%
CTGTCTTCCTATCTCCACCT+TGG + chr1_1:50669276-50669295 Msa0026710:CDS 50.0%
GTCTTCCTATCTCCACCTTG+GGG + chr1_1:50669278-50669297 Msa0026710:CDS 50.0%
GTCGCAACCTTGGCATAATC+TGG - chr1_1:50669308-50669327 None:intergenic 50.0%
GCATCTACCTACCCATCATG+CGG - chr1_1:50669356-50669375 None:intergenic 50.0%
AGCACAAGTATCTGCTGCGT+AGG + chr1_1:50669919-50669938 Msa0026710:intron 50.0%
ATTACCTCTAGCGACCATGG+TGG - chr1_1:50670137-50670156 None:intergenic 50.0%
TAAAAGAAAGCGGCGCGCTC+CGG + chr1_1:50662991-50663010 Msa0026710:five_prime_UTR 55.0%
! TCCGGTTTGAGAGAGGTAGC+CGG + chr1_1:50663009-50663028 Msa0026710:five_prime_UTR 55.0%
TCCGGCTACCTCTCTCAAAC+CGG - chr1_1:50663013-50663032 None:intergenic 55.0%
GCCGGAGACCGTAGTCAATA+TGG + chr1_1:50663027-50663046 Msa0026710:five_prime_UTR 55.0%
GGTGCCTTCATAGTCGGAGT+CGG - chr1_1:50663059-50663078 None:intergenic 55.0%
GGGTCTCCCTCTTTCCTTTC+AGG + chr1_1:50663516-50663535 Msa0026710:CDS 55.0%
GAGCTCACTAGCTGTCAGCT+TGG + chr1_1:50663815-50663834 Msa0026710:intron 55.0%
TGGAGGGTTTAGGAGGGGAA+GGG - chr1_1:50664209-50664228 None:intergenic 55.0%
ATGGAGGGTTTAGGAGGGGA+AGG - chr1_1:50664210-50664229 None:intergenic 55.0%
ACAGGGTTGCTGCAAGTACG+TGG - chr1_1:50664749-50664768 None:intergenic 55.0%
TTCCGCTGCACCATCACAGT+AGG - chr1_1:50664885-50664904 None:intergenic 55.0%
TGGTGCAGCGGAAGTTGACA+TGG + chr1_1:50664892-50664911 Msa0026710:CDS 55.0%
GACATGGCTCAATCTGTCCC+TGG + chr1_1:50664908-50664927 Msa0026710:CDS 55.0%
GCTCAATCTGTCCCTGGTGA+AGG + chr1_1:50664914-50664933 Msa0026710:CDS 55.0%
!! GGTGCTGGTGACAAGGTTTG+TGG + chr1_1:50665097-50665116 Msa0026710:CDS 55.0%
GATACTCCATCCCTGAGGGT+GGG - chr1_1:50665402-50665421 None:intergenic 55.0%
AGATACTCCATCCCTGAGGG+TGG - chr1_1:50665403-50665422 None:intergenic 55.0%
CAAGCATCACGTTGTGCAGG+TGG + chr1_1:50666565-50666584 Msa0026710:CDS 55.0%
ATTGACTGTTTCACCGGCGC+TGG + chr1_1:50666595-50666614 Msa0026710:CDS 55.0%
ATGCATGCCTGAGGTTAGGG+TGG + chr1_1:50669149-50669168 Msa0026710:intron 55.0%
TGCATGCCTGAGGTTAGGGT+GGG + chr1_1:50669150-50669169 Msa0026710:intron 55.0%
TATAGGCCCACCCTAACCTC+AGG - chr1_1:50669159-50669178 None:intergenic 55.0%
TTCCTATCTCCACCTTGGGG+TGG + chr1_1:50669281-50669300 Msa0026710:CDS 55.0%
TAATCTGGTCCACCCCAAGG+TGG - chr1_1:50669293-50669312 None:intergenic 55.0%
GCATAATCTGGTCCACCCCA+AGG - chr1_1:50669296-50669315 None:intergenic 55.0%
GGGTGGACCAGATTATGCCA+AGG + chr1_1:50669298-50669317 Msa0026710:CDS 55.0%
!! GCTTAGACCGCATGATGGGT+AGG + chr1_1:50669346-50669365 Msa0026710:intron 55.0%
CTCTATCTGCCTCTCCACCA+TGG + chr1_1:50670120-50670139 Msa0026710:CDS 55.0%
GGTTTAGGAGGGGAAGGGAG+GGG - chr1_1:50664204-50664223 None:intergenic 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG - chr1_1:50664205-50664224 None:intergenic 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG - chr1_1:50664206-50664225 None:intergenic 60.0%
GCTGCAAGTACGTGGCTGCT+TGG - chr1_1:50664741-50664760 None:intergenic 60.0%
!! ACGACGATGGTGCTGCCACT+TGG + chr1_1:50665203-50665222 Msa0026710:CDS 60.0%
GTTAGCTGGCGACTGCCAAG+TGG - chr1_1:50665221-50665240 None:intergenic 60.0%
TCTACATGGGACCCACCCTC+AGG + chr1_1:50665388-50665407 Msa0026710:CDS 60.0%
CTACATGGGACCCACCCTCA+GGG + chr1_1:50665389-50665408 Msa0026710:CDS 60.0%
GCTGAGATTGGAGTCGCTGC+TGG + chr1_1:50665565-50665584 Msa0026710:CDS 60.0%
!! ACTGTTTCACCGGCGCTGGT+GGG + chr1_1:50666599-50666618 Msa0026710:CDS 60.0%
GTCCACCCCAAGGTGGAGAT+AGG - chr1_1:50669286-50669305 None:intergenic 60.0%
! CTCTAGCGACCATGGTGGAG+AGG - chr1_1:50670132-50670151 None:intergenic 60.0%
CTCTCCACCATGGTCGCTAG+AGG + chr1_1:50670130-50670149 Msa0026710:CDS 60.0%
TAGGAGGGGAAGGGAGGGGA+GGG - chr1_1:50664200-50664219 None:intergenic 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG - chr1_1:50664201-50664220 None:intergenic 65.0%
ATGGGACCCACCCTCAGGGA+TGG + chr1_1:50665393-50665412 Msa0026710:CDS 65.0%
! GACTGTTTCACCGGCGCTGG+TGG + chr1_1:50666598-50666617 Msa0026710:CDS 65.0%
GATGGCATTCCCACCAGCGC+CGG - chr1_1:50666611-50666630 None:intergenic 65.0%
! GGCGCGCTCCGGTTTGAGAG+AGG + chr1_1:50663002-50663021 Msa0026710:five_prime_UTR 70.0%
! GGGGTGGGGGAGCACATGAG+TGG + chr1_1:50668316-50668335 Msa0026710:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 50662898 50671443 50662898 ID=Msa0026710;Name=Msa0026710
chr1_1 mRNA 50662898 50671443 50662898 ID=Msa0026710-mRNA-1;Parent=Msa0026710;Name=Msa0026710-mRNA-1;_AED=0.09;_eAED=0.09;_QI=170|0.55|0.7|0.9|1|1|10|444|668
chr1_1 exon 50662898 50663128 50662898 ID=Msa0026710-mRNA-1:exon:14686;Parent=Msa0026710-mRNA-1
chr1_1 exon 50663455 50663549 50663455 ID=Msa0026710-mRNA-1:exon:14687;Parent=Msa0026710-mRNA-1
chr1_1 exon 50664698 50665722 50664698 ID=Msa0026710-mRNA-1:exon:14688;Parent=Msa0026710-mRNA-1
chr1_1 exon 50665896 50666065 50665896 ID=Msa0026710-mRNA-1:exon:14689;Parent=Msa0026710-mRNA-1
chr1_1 exon 50666413 50666644 50666413 ID=Msa0026710-mRNA-1:exon:14690;Parent=Msa0026710-mRNA-1
chr1_1 exon 50667855 50667990 50667855 ID=Msa0026710-mRNA-1:exon:14691;Parent=Msa0026710-mRNA-1
chr1_1 exon 50668375 50668449 50668375 ID=Msa0026710-mRNA-1:exon:14692;Parent=Msa0026710-mRNA-1
chr1_1 exon 50669269 50669319 50669269 ID=Msa0026710-mRNA-1:exon:14693;Parent=Msa0026710-mRNA-1
chr1_1 exon 50670053 50670151 50670053 ID=Msa0026710-mRNA-1:exon:14694;Parent=Msa0026710-mRNA-1
chr1_1 exon 50670937 50671443 50670937 ID=Msa0026710-mRNA-1:exon:14695;Parent=Msa0026710-mRNA-1
chr1_1 five_prime_UTR 50662898 50663067 50662898 ID=Msa0026710-mRNA-1:five_prime_utr;Parent=Msa0026710-mRNA-1
chr1_1 CDS 50663068 50663128 50663068 ID=Msa0026710-mRNA-1:cds;Parent=Msa0026710-mRNA-1
chr1_1 CDS 50663455 50663549 50663455 ID=Msa0026710-mRNA-1:cds;Parent=Msa0026710-mRNA-1
chr1_1 CDS 50664698 50665722 50664698 ID=Msa0026710-mRNA-1:cds;Parent=Msa0026710-mRNA-1
chr1_1 CDS 50665896 50666065 50665896 ID=Msa0026710-mRNA-1:cds;Parent=Msa0026710-mRNA-1
chr1_1 CDS 50666413 50666644 50666413 ID=Msa0026710-mRNA-1:cds;Parent=Msa0026710-mRNA-1
chr1_1 CDS 50667855 50667990 50667855 ID=Msa0026710-mRNA-1:cds;Parent=Msa0026710-mRNA-1
chr1_1 CDS 50668375 50668449 50668375 ID=Msa0026710-mRNA-1:cds;Parent=Msa0026710-mRNA-1
chr1_1 CDS 50669269 50669319 50669269 ID=Msa0026710-mRNA-1:cds;Parent=Msa0026710-mRNA-1
chr1_1 CDS 50670053 50670151 50670053 ID=Msa0026710-mRNA-1:cds;Parent=Msa0026710-mRNA-1
chr1_1 CDS 50670937 50670999 50670937 ID=Msa0026710-mRNA-1:cds;Parent=Msa0026710-mRNA-1
chr1_1 three_prime_UTR 50671000 50671443 50671000 ID=Msa0026710-mRNA-1:three_prime_utr;Parent=Msa0026710-mRNA-1
Gene Sequence

>Msa0026710

ATGAAGGCACCGCTATTCAATCTCTCGGTTCTCTCTTCAATGTCACCCAAGTCTTTCTCTGATTGGAGTGAGATTATTGTTTTACCCGAGGATTTGGAATTGAGCAAACAAATGAATGAATTGGGTCTCCCTCTTTCCTTTCAGGCAAAGAATGAGAAATGTGGACCAGTAAAAGGCAAAAAGAAGGGTGCACGTTCCAAGCAGCCACGTACTTGCAGCAACCCTGTTGATGAAACTCTAAATGAAGTGAGTGCAGAGGAGGTTATATCTCTTGCTAAATTTCATGACAAAACTAACAGTTCATTATCTTGTATATCAATGCTGGGCCAAAGTGAATCATCCTACTGTGATGGTGCAGCGGAAGTTGACATGGCTCAATCTGTCCCTGGTGAAGGAGATAATTCAACATGCTGCACTGGGTTTGCTAATGGTGTTTCCGAGGAAAGGATTAATAGTATAAATAATGAAGAAACTAATGATGCCCAGAACCGTGACTTTGATCTTAAAATTGCACATGCCTCAGATACTGGAATCTCTGCTGGAAGCCATTTAACAGGTGCTGGTGACAAGGTTTGTGGGATAGAACTGGGCGAAGTTGACAGTGAATGTTTAGAACTTTCACCATCTGTTTTCAAAAATACAGATTGTGAGACTATTTGGAACGACGATGGTGCTGCCACTTGGCAGTCGCCAGCTAACGAATCAGAATCACTTCCCATGAGTTTGGAAGGGGTTGCATATGACAGAGTTGATGGGTCAATTGATTGTGGTGAATTTGGAGATTGGATGGTGTTATGGGATACTTTCTATGGGAGAAGATACTTCTACAATGTCAAAACAGACACTTCTACATGGGACCCACCCTCAGGGATGGAGTATCTAGCATTTGGTGGGTGTACTGAATTAGATGATAGTGAAGCTCTAAAGTCATTAGAGGAGTGTCAAACACAAAGCAGCATCAAACAACCTGAAGAAACCTTGGTAGACGAGAACTTATCAGGAAATCAACATGAAGAGTATTCAGCTGAGATTGGAGTCGCTGCTGGAAATTTGGTCTCTGATATTGCTACAAATAGTGAAGACCAATCTCTTCATCATTCAGATGAGAATCTTGAGAGAACTAGTTGCAACGGCAGAGTTTCATGCTGTTCTGTATCAAATACCCTGGATCACGTCGTTAGCTCTAACAATAGATGCAGTCAAGCAACATCAGAGGTCGATCATACACCAACGGAAAACATGGTAATTGATACGCCTGAATTGGATAGTAAATCTGATGCTTTCATGTCAAAACAAAAAAAGAAAGTGAAAAGAAAACACAGGCGGAAGAAATTATATTATGAAACTGAAGATCTCGGATTTCAAAAAATGCCTGAAGCTTATTCTGCAACAATTGAAAAATATTGGTGTCAGAGGTATATTTTATTCTCTAGATTTGATGATGGTGTAAAAATGGATGAGGAAGGATGGTTTTCTGTCACTCCAGAGATTATTGCACATTATCAAGCATCACGTTGTGCAGGTGGCACAGTAATTGACTGTTTCACCGGCGCTGGTGGGAATGCCATCCAATTTGCACAACGGTGCAGACATGTGGTTGCAATCGATATTGATCCATTGAAGATTGATTATGCTAGGCATAATGCTGCTATTTATCGAGTGGATGATCAAATTGACTTCATAGTTGGTGACTTCTTCGTCTTGGCACCAAAGTTAAAGATGAGCAGTACTGATGTTGTCAAGCAATCGATTTCAGATATGTTATGTTTGGATGAAGGATATAAGGGAGTTAGAGCTGACACTGTCTTCCTATCTCCACCTTGGGGTGGACCAGATTATGCCAAGGAGATTGCTTCCAGAGTTGTCATGTTCCTTCCAAGAAATGTCAACTTCAACCAATTGGCAGAGTTATCTCTATCTGCCTCTCCACCATGGTCGCTAGAGGTGGAGAAAGTTCATTTAAATGGAAAATTGAAAGCAGTCACAGCTTATTTCAGTTGTACATGA
Protein sequence

>Msa0026710

MKAPLFNLSVLSSMSPKSFSDWSEIIVLPEDLELSKQMNELGLPLSFQAKNEKCGPVKGKKKGARSKQPRTCSNPVDETLNEVSAEEVISLAKFHDKTNSSLSCISMLGQSESSYCDGAAEVDMAQSVPGEGDNSTCCTGFANGVSEERINSINNEETNDAQNRDFDLKIAHASDTGISAGSHLTGAGDKVCGIELGEVDSECLELSPSVFKNTDCETIWNDDGAATWQSPANESESLPMSLEGVAYDRVDGSIDCGEFGDWMVLWDTFYGRRYFYNVKTDTSTWDPPSGMEYLAFGGCTELDDSEALKSLEECQTQSSIKQPEETLVDENLSGNQHEEYSAEIGVAAGNLVSDIATNSEDQSLHHSDENLERTSCNGRVSCCSVSNTLDHVVSSNNRCSQATSEVDHTPTENMVIDTPELDSKSDAFMSKQKKKVKRKHRRKKLYYETEDLGFQKMPEAYSATIEKYWCQRYILFSRFDDGVKMDEEGWFSVTPEIIAHYQASRCAGGTVIDCFTGAGGNAIQFAQRCRHVVAIDIDPLKIDYARHNAAIYRVDDQIDFIVGDFFVLAPKLKMSSTDVVKQSISDMLCLDEGYKGVRADTVFLSPPWGGPDYAKEIASRVVMFLPRNVNFNQLAELSLSASPPWSLEVEKVHLNGKLKAVTAYFSCT*