Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053030 | G7IBA2 | 89.057 | 265 | 24 | 3 | 1 | 263 | 1 | 262 | 4.00e-149 | 426 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004950 | Msa0053030 | 0.817890 | 2.607438e-52 | -8.615850e-47 |
| Msa0004980 | Msa0053030 | 0.840807 | 6.962723e-58 | -8.615850e-47 |
| Msa0053030 | Msa0471590 | 0.810318 | 1.223767e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053030 | MtrunA17_Chr1g0151791 | 89.057 | 265 | 24 | 3 | 1 | 263 | 1 | 262 | 7.71e-153 | 426 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053030 | AT3G20430.1 | 49.630 | 270 | 117 | 8 | 1 | 261 | 1 | 260 | 2.61e-69 | 215 |
Find 63 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACTAACCGTTTGGAATT+TGG | 0.158097 | 1_2:+7446231 | Msa0053030:five_prime_UTR |
| CTGCTGATGGTAAGCGATTT+CGG | 0.295356 | 1_2:+7449889 | Msa0053030:CDS |
| ATTATCTCTTTGTAAGCATT+TGG | 0.296419 | 1_2:-7449954 | None:intergenic |
| TAATAATACAGAAGCAATTC+AGG | 0.298572 | 1_2:+7450728 | Msa0053030:intron |
| TTACTAACCGTTTGGAATTT+GGG | 0.298954 | 1_2:+7446232 | Msa0053030:five_prime_UTR |
| CGGCGACACCGTTTCGATTA+TGG | 0.307561 | 1_2:-7446366 | None:intergenic |
| AATTACTTGTCATAGTTAAC+TGG | 0.317290 | 1_2:+7451180 | Msa0053030:three_prime_UTR |
| ATTTGCAGTGTTCAAAAGAT+AGG | 0.347975 | 1_2:+7451155 | Msa0053030:three_prime_UTR |
| TGGAGCAGTATGGTTCCATT+TGG | 0.397434 | 1_2:+7451118 | Msa0053030:three_prime_UTR |
| CTCGAGAGTTACTAACCGTT+TGG | 0.399664 | 1_2:+7446224 | Msa0053030:five_prime_UTR |
| AAGAGAAAGAGAAAGGCTTT+AGG | 0.415930 | 1_2:+7446481 | Msa0053030:CDS |
| TGATGTAACCTTGCCTTGAA+TGG | 0.441747 | 1_2:+7450984 | Msa0053030:exon |
| ATTCTTAATCTGTCATGAAC+AGG | 0.445504 | 1_2:-7450916 | None:intergenic |
| TGATGTTGAAGAGGGTGAAT+TGG | 0.447652 | 1_2:+7446321 | Msa0053030:CDS |
| AGATCATCATCATAGGAAAC+AGG | 0.457123 | 1_2:-7450940 | None:intergenic |
| ATACAGCTGTAGGTTGCCTT+GGG | 0.458577 | 1_2:+7446863 | Msa0053030:CDS |
| TCCTATGATGATGATCTGCT+TGG | 0.462050 | 1_2:+7450946 | Msa0053030:CDS |
| TGCTTGTGACAACAAGTTCA+CGG | 0.464463 | 1_2:+7451094 | Msa0053030:three_prime_UTR |
| TATACAGCTGTAGGTTGCCT+TGG | 0.468657 | 1_2:+7446862 | Msa0053030:CDS |
| AAGAAACCTGTCAATGTTGA+TGG | 0.484273 | 1_2:-7446518 | None:intergenic |
| ATGCACCCATCAACATTGAC+AGG | 0.486157 | 1_2:+7446512 | Msa0053030:CDS |
| AGTTCACGGATGGAGCAGTA+TGG | 0.487453 | 1_2:+7451108 | Msa0053030:three_prime_UTR |
| GCTTACCATCAGCAGTCTGC+TGG | 0.494811 | 1_2:-7449881 | None:intergenic |
| TGGAATTTGGGCATGGAGGG+TGG | 0.498961 | 1_2:+7446244 | Msa0053030:exon |
| TTTAATAAAATATATACTGT+TGG | 0.502477 | 1_2:+7451228 | Msa0053030:three_prime_UTR |
| AGCAGTCTGCTGGCCTCCAC+AGG | 0.505033 | 1_2:-7449871 | None:intergenic |
| TCTTTCATGCAAAATCCAAA+TGG | 0.506086 | 1_2:-7451133 | None:intergenic |
| GTTTGGAATTTGGGCATGGA+GGG | 0.508864 | 1_2:+7446241 | Msa0053030:exon |
| GATGGTAAGCGATTTCGGAC+AGG | 0.509601 | 1_2:+7449894 | Msa0053030:CDS |
| TCCAAGCAGATCATCATCAT+AGG | 0.511312 | 1_2:-7450947 | None:intergenic |
| GTGTATGGAAAGAAGAAAGA+AGG | 0.513511 | 1_2:-7451051 | None:intergenic |
| AACCGTTTGGAATTTGGGCA+TGG | 0.528408 | 1_2:+7446237 | Msa0053030:exon |
| CAAGATCAAGATAAACCGCC+AGG | 0.529708 | 1_2:+7450874 | Msa0053030:CDS |
| GAGAAAGGCTTTAGGAGGAT+CGG | 0.532126 | 1_2:+7446489 | Msa0053030:CDS |
| ATGGATGCCTGCTTAAAACT+TGG | 0.535810 | 1_2:-7450754 | None:intergenic |
| CTCCATGCCCAAATTCCAAA+CGG | 0.557900 | 1_2:-7446239 | None:intergenic |
| ATGGTAAGCGATTTCGGACA+GGG | 0.567855 | 1_2:+7449895 | Msa0053030:CDS |
| GAACAAGACCATAATCGAAA+CGG | 0.575699 | 1_2:+7446358 | Msa0053030:CDS |
| CGCTCAACGCAGAAATCCCA+AGG | 0.577857 | 1_2:-7446879 | None:intergenic |
| CGTTTGGAATTTGGGCATGG+AGG | 0.580204 | 1_2:+7446240 | Msa0053030:exon |
| AGAAAGAGAAAGGCTTTAGG+AGG | 0.581783 | 1_2:+7446484 | Msa0053030:CDS |
| TGCATTTGCGATGCGCAAGT+AGG | 0.587168 | 1_2:-7450853 | None:intergenic |
| AAACGGTGTCGCCGCCACAC+AGG | 0.597293 | 1_2:+7446375 | Msa0053030:CDS |
| AGAAGAAGACGATGTTGAGA+TGG | 0.597325 | 1_2:+7446297 | Msa0053030:CDS |
| AGAGGAGGATTCTTCTCAAG+AGG | 0.611513 | 1_2:+7450783 | Msa0053030:CDS |
| TGTGACAACAAGTTCACGGA+TGG | 0.614628 | 1_2:+7451098 | Msa0053030:three_prime_UTR |
| GGTTTGTGATAGAGACATGT+CGG | 0.623578 | 1_2:+7446809 | Msa0053030:intron |
| TAGAACGTTGTTGAAAAGTG+TGG | 0.623743 | 1_2:+7451251 | Msa0053030:three_prime_UTR |
| GAGATGGTTGATGTTGAAGA+GGG | 0.630707 | 1_2:+7446313 | Msa0053030:CDS |
| GGAGGCCAGCAGACTGCTGA+TGG | 0.631237 | 1_2:+7449876 | Msa0053030:CDS |
| TGAGATGGTTGATGTTGAAG+AGG | 0.639578 | 1_2:+7446312 | Msa0053030:CDS |
| GGTAAGCGATTTCGGACAGG+GGG | 0.641482 | 1_2:+7449897 | Msa0053030:CDS |
| AAGTAGGATTGTCAGAAACA+TGG | 0.643430 | 1_2:-7450837 | None:intergenic |
| ACGTTGTTGAAAAGTGTGGT+TGG | 0.646774 | 1_2:+7451255 | Msa0053030:three_prime_UTR |
| AGAAACCTGTCAATGTTGAT+GGG | 0.647666 | 1_2:-7446517 | None:intergenic |
| GTTGAGCGATATCGTCAAAG+AGG | 0.648067 | 1_2:+7446894 | Msa0053030:CDS |
| TACATGGTATATACAGCTGT+AGG | 0.664112 | 1_2:+7446853 | Msa0053030:CDS |
| GACGCAATACAGTCCTGTGG+AGG | 0.666430 | 1_2:+7449858 | Msa0053030:CDS |
| TGCGCACTAGAAAATGTACA+AGG | 0.667493 | 1_2:-7450808 | None:intergenic |
| TGGTAAGCGATTTCGGACAG+GGG | 0.706451 | 1_2:+7449896 | Msa0053030:CDS |
| GTAGACGCAATACAGTCCTG+TGG | 0.714054 | 1_2:+7449855 | Msa0053030:CDS |
| GAGATTATGATCCTGTGTGG+CGG | 0.728683 | 1_2:-7446386 | None:intergenic |
| AATGAGATTATGATCCTGTG+TGG | 0.779299 | 1_2:-7446389 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATCATGAAATATA+AGG | - | chr1_2:7448007-7448026 | None:intergenic | 10.0% |
| !! | TATTTCATGATTTATTTAAT+AGG | + | chr1_2:7448009-7448028 | Msa0053030:intron | 10.0% |
| !! | GTATTATCAATATAATTATT+CGG | + | chr1_2:7448125-7448144 | Msa0053030:intron | 10.0% |
| !! | ATGTGTATAAAATTAAATAT+TGG | - | chr1_2:7449148-7449167 | None:intergenic | 10.0% |
| !!! | TTTAACATTTTAATTTTTTC+TGG | + | chr1_2:7449313-7449332 | Msa0053030:intron | 10.0% |
| !! | TTTAATAAAATATATACTGT+TGG | + | chr1_2:7451228-7451247 | Msa0053030:three_prime_UTR | 10.0% |
| !! | AATATAATGCACTAATAATT+AGG | - | chr1_2:7447146-7447165 | None:intergenic | 15.0% |
| !! | TAGTGCATTATATTATTAAT+TGG | + | chr1_2:7447152-7447171 | Msa0053030:intron | 15.0% |
| !!! | AGAGTATTTGAATTATATTT+TGG | + | chr1_2:7447964-7447983 | Msa0053030:intron | 15.0% |
| !!! | GAGTATTTGAATTATATTTT+GGG | + | chr1_2:7447965-7447984 | Msa0053030:intron | 15.0% |
| !! | GATATCTTATTGAAATAATA+AGG | - | chr1_2:7448185-7448204 | None:intergenic | 15.0% |
| !! | AATAAAGGGAAATTATTAAA+AGG | - | chr1_2:7448866-7448885 | None:intergenic | 15.0% |
| !!! | TATTTAGGAAAATTCAATTT+TGG | - | chr1_2:7449223-7449242 | None:intergenic | 15.0% |
| !! | GTTAAATTCTTATAAAACAA+AGG | - | chr1_2:7449299-7449318 | None:intergenic | 15.0% |
| !! | TAAAATTAATACCAGAAAAA+TGG | + | chr1_2:7450439-7450458 | Msa0053030:intron | 15.0% |
| !! | AGAGTAATGATTAAATGTAA+TGG | - | chr1_2:7446726-7446745 | None:intergenic | 20.0% |
| !! | TGTATTTACTTATGTCAAAA+CGG | - | chr1_2:7446758-7446777 | None:intergenic | 20.0% |
| !! | TTCATTTGATAAAACAGTTT+AGG | - | chr1_2:7447114-7447133 | None:intergenic | 20.0% |
| !!! | AACTGTTTTATCAAATGAAA+AGG | + | chr1_2:7447115-7447134 | Msa0053030:intron | 20.0% |
| !! | TCTTCAATTATTAAGATATC+TGG | - | chr1_2:7447198-7447217 | None:intergenic | 20.0% |
| !! | AGAATTACAAAATCAGTATT+AGG | - | chr1_2:7447497-7447516 | None:intergenic | 20.0% |
| !!! | TTTGAATTATATTTTGGGTT+TGG | + | chr1_2:7447970-7447989 | Msa0053030:intron | 20.0% |
| !! | TCATGAAATATAAGGAAATA+TGG | - | chr1_2:7447999-7448018 | None:intergenic | 20.0% |
| !! | TATTGAAATAATAAGGACTT+GGG | - | chr1_2:7448178-7448197 | None:intergenic | 20.0% |
| !! | TTATTGAAATAATAAGGACT+TGG | - | chr1_2:7448179-7448198 | None:intergenic | 20.0% |
| !!! | TTGTTTTGAACTTTTTTGTT+TGG | + | chr1_2:7448275-7448294 | Msa0053030:intron | 20.0% |
| !! | TCTAAGGAAAAAAACAATAT+GGG | - | chr1_2:7448432-7448451 | None:intergenic | 20.0% |
| !! | ATCTAAGGAAAAAAACAATA+TGG | - | chr1_2:7448433-7448452 | None:intergenic | 20.0% |
| !! | TAATAATTTCCCTTTATTGA+TGG | + | chr1_2:7448868-7448887 | Msa0053030:intron | 20.0% |
| !! | AATAATTTCCCTTTATTGAT+GGG | + | chr1_2:7448869-7448888 | Msa0053030:intron | 20.0% |
| !! | TATATGAGAGAAAAATAAAG+TGG | - | chr1_2:7449177-7449196 | None:intergenic | 20.0% |
| !! | AATTTCATTACAGTTATAGA+AGG | + | chr1_2:7449272-7449291 | Msa0053030:intron | 20.0% |
| !!! | TTAAGATTTTAGTGTAAACA+TGG | + | chr1_2:7449396-7449415 | Msa0053030:intron | 20.0% |
| !!! | GTTGAAATCTAAAATATTGT+TGG | + | chr1_2:7449467-7449486 | Msa0053030:intron | 20.0% |
| !! | CCAAAATTCATAACAAAAAA+TGG | - | chr1_2:7449634-7449653 | None:intergenic | 20.0% |
| !!! | CCATTTTTTGTTATGAATTT+TGG | + | chr1_2:7449631-7449650 | Msa0053030:intron | 20.0% |
| !! | ATTATACTCTTCATAAATCA+TGG | + | chr1_2:7449675-7449694 | Msa0053030:intron | 20.0% |
| !!! | TTGGATTGATAATTTTTACT+AGG | - | chr1_2:7450213-7450232 | None:intergenic | 20.0% |
| !! | AGAGTAAAGTGAAAAAAAAA+AGG | - | chr1_2:7450250-7450269 | None:intergenic | 20.0% |
| !!! | TTTTTTTCACTTTACTCTAA+TGG | + | chr1_2:7450252-7450271 | Msa0053030:intron | 20.0% |
| !! | AAATAATATTTGAATGACCT+TGG | - | chr1_2:7450659-7450678 | None:intergenic | 20.0% |
| ! | TAAAAACAAGAGAAAGAGAA+AGG | + | chr1_2:7446474-7446493 | Msa0053030:CDS | 25.0% |
| !! | CATTATTAGGGTTTGAAATT+GGG | - | chr1_2:7446551-7446570 | None:intergenic | 25.0% |
| ! | TAACACATTCAGCATTATTA+GGG | - | chr1_2:7446563-7446582 | None:intergenic | 25.0% |
| ! | ATAACACATTCAGCATTATT+AGG | - | chr1_2:7446564-7446583 | None:intergenic | 25.0% |
| !!! | CTGTTTTCAGCTTATTTTAA+GGG | + | chr1_2:7446683-7446702 | Msa0053030:intron | 25.0% |
| !! | TGATTAAATGTAATGGAACA+AGG | - | chr1_2:7446719-7446738 | None:intergenic | 25.0% |
| !!! | ATGAATTATGTGCTTTTTTC+AGG | + | chr1_2:7446788-7446807 | Msa0053030:intron | 25.0% |
| ! | GAAAGAGAAAAAATCATACA+TGG | + | chr1_2:7446837-7446856 | Msa0053030:CDS | 25.0% |
| !! | TACAAAGTTGTTTCAAATTG+TGG | - | chr1_2:7447045-7447064 | None:intergenic | 25.0% |
| !! | TTGTTTTCAGACATTCTAAA+TGG | - | chr1_2:7447080-7447099 | None:intergenic | 25.0% |
| ! | ATAATGCACTAATAATTAGG+TGG | - | chr1_2:7447143-7447162 | None:intergenic | 25.0% |
| ! | ATTATCAAACCAGTGTAAAA+AGG | - | chr1_2:7447352-7447371 | None:intergenic | 25.0% |
| ! | TGCTAAGAACTATTGATATT+TGG | + | chr1_2:7447404-7447423 | Msa0053030:intron | 25.0% |
| ! | GCTAAGAACTATTGATATTT+GGG | + | chr1_2:7447405-7447424 | Msa0053030:intron | 25.0% |
| ! | CTAAGAACTATTGATATTTG+GGG | + | chr1_2:7447406-7447425 | Msa0053030:intron | 25.0% |
| ! | TAAGAACTATTGATATTTGG+GGG | + | chr1_2:7447407-7447426 | Msa0053030:intron | 25.0% |
| !!! | AATTCTTCTTATTTCTATCG+AGG | + | chr1_2:7447518-7447537 | Msa0053030:intron | 25.0% |
| ! | GATTATGAAATCAGTTAAGA+AGG | - | chr1_2:7447644-7447663 | None:intergenic | 25.0% |
| ! | ATACAAGTAAAAGAACACAA+AGG | - | chr1_2:7447673-7447692 | None:intergenic | 25.0% |
| !! | TTTGTGTTCTTTTACTTGTA+TGG | + | chr1_2:7447672-7447691 | Msa0053030:intron | 25.0% |
| !! | TAAGAATGATCGATATTTTG+TGG | + | chr1_2:7447708-7447727 | Msa0053030:intron | 25.0% |
| !! | ATCTAGTAGGAGTATAAATA+AGG | + | chr1_2:7448044-7448063 | Msa0053030:intron | 25.0% |
| !! | TCTAGTAGGAGTATAAATAA+GGG | + | chr1_2:7448045-7448064 | Msa0053030:intron | 25.0% |
| !!! | AGACCAATTACTCTAAAATT+TGG | + | chr1_2:7448245-7448264 | Msa0053030:intron | 25.0% |
| !!! | GACCAATTACTCTAAAATTT+GGG | + | chr1_2:7448246-7448265 | Msa0053030:intron | 25.0% |
| !!! | ATCCCAAATTTTAGAGTAAT+TGG | - | chr1_2:7448251-7448270 | None:intergenic | 25.0% |
| ! | GTACACTGTAAAAAAATCTA+AGG | - | chr1_2:7448448-7448467 | None:intergenic | 25.0% |
| !! | TGTTGAAATGATAAGGTTTT+AGG | - | chr1_2:7448733-7448752 | None:intergenic | 25.0% |
| ! | AAGTATCTGTTGAAATGATA+AGG | - | chr1_2:7448740-7448759 | None:intergenic | 25.0% |
| ! | AGTAATAGATAAGCATAATC+AGG | - | chr1_2:7448986-7449005 | None:intergenic | 25.0% |
| ! | TCAAAGTTTAAACAGAGAAT+TGG | - | chr1_2:7449106-7449125 | None:intergenic | 25.0% |
| ! | TAACTGTAATGAAATTCAGA+TGG | - | chr1_2:7449268-7449287 | None:intergenic | 25.0% |
| !! | ATGAAAGTATATTGTTGAGT+AGG | + | chr1_2:7449342-7449361 | Msa0053030:intron | 25.0% |
| ! | AATAGTAAAGGAACAATTGA+TGG | + | chr1_2:7449366-7449385 | Msa0053030:intron | 25.0% |
| ! | TGATTCTCCTACATATATTA+GGG | - | chr1_2:7449432-7449451 | None:intergenic | 25.0% |
| ! | TTGATTCTCCTACATATATT+AGG | - | chr1_2:7449433-7449452 | None:intergenic | 25.0% |
| !! | GATTTATGAAGAGTATAATG+TGG | - | chr1_2:7449674-7449693 | None:intergenic | 25.0% |
| !! | TCTTTGGGTTTAATTATGTT+TGG | + | chr1_2:7449766-7449785 | Msa0053030:intron | 25.0% |
| ! | TAATTAAGTGTTAAACTCAC+AGG | + | chr1_2:7449833-7449852 | Msa0053030:intron | 25.0% |
| ! | ATTATCTCTTTGTAAGCATT+TGG | - | chr1_2:7449957-7449976 | None:intergenic | 25.0% |
| ! | TGTTTAAGCAGTAAAAAGTA+AGG | - | chr1_2:7450015-7450034 | None:intergenic | 25.0% |
| !!! | CTTTACTCTAATGGATTTTA+AGG | + | chr1_2:7450261-7450280 | Msa0053030:intron | 25.0% |
| !!! | GTCCAGTTTTTTTTATGTTA+GGG | - | chr1_2:7450313-7450332 | None:intergenic | 25.0% |
| !!! | TGTCCAGTTTTTTTTATGTT+AGG | - | chr1_2:7450314-7450333 | None:intergenic | 25.0% |
| !!! | ATGAACAATTTCCATTTTTC+TGG | - | chr1_2:7450453-7450472 | None:intergenic | 25.0% |
| ! | TATCAAACAAAAAATCTTCC+CGG | - | chr1_2:7450503-7450522 | None:intergenic | 25.0% |
| ! | GATTATATTTAAGAGCAACT+GGG | - | chr1_2:7450620-7450639 | None:intergenic | 25.0% |
| ! | TGATTATATTTAAGAGCAAC+TGG | - | chr1_2:7450621-7450640 | None:intergenic | 25.0% |
| !! | CATTGATTAATAATCAACCA+AGG | + | chr1_2:7450639-7450658 | Msa0053030:intron | 25.0% |
| ! | TAATAATACAGAAGCAATTC+AGG | + | chr1_2:7450728-7450747 | Msa0053030:intron | 25.0% |
| ! | AATGAATAAAAAAACGTTCC+AGG | - | chr1_2:7451024-7451043 | None:intergenic | 25.0% |
| ! | AATTACTTGTCATAGTTAAC+TGG | + | chr1_2:7451180-7451199 | Msa0053030:three_prime_UTR | 25.0% |
| ! | TTACTAACCGTTTGGAATTT+GGG | + | chr1_2:7446232-7446251 | Msa0053030:five_prime_UTR | 30.0% |
| CAAAACCTCTCAGTAAAAAT+CGG | + | chr1_2:7446446-7446465 | Msa0053030:CDS | 30.0% | |
| ! | GCATTATTAGGGTTTGAAAT+TGG | - | chr1_2:7446552-7446571 | None:intergenic | 30.0% |
| !!! | GCTGTTTTCAGCTTATTTTA+AGG | + | chr1_2:7446682-7446701 | Msa0053030:intron | 30.0% |
| AGATGAAAATCAACATTGCA+AGG | - | chr1_2:7446938-7446957 | None:intergenic | 30.0% | |
| ! | TGATTTTCATCTTGAATGCA+TGG | + | chr1_2:7446946-7446965 | Msa0053030:intron | 30.0% |
| ! | GTTTGATAATTCTGAATCCT+CGG | + | chr1_2:7447362-7447381 | Msa0053030:intron | 30.0% |
| TTAGGAGAATAGACATGTAT+TGG | - | chr1_2:7447479-7447498 | None:intergenic | 30.0% | |
| CGATAAGAATGATACGTATT+TGG | + | chr1_2:7447548-7447567 | Msa0053030:intron | 30.0% | |
| TAAGAATGATACGTATTTGG+TGG | + | chr1_2:7447551-7447570 | Msa0053030:intron | 30.0% | |
| AAAACCCAACAACATTTGTA+AGG | - | chr1_2:7447875-7447894 | None:intergenic | 30.0% | |
| !!! | TTGTTGGGTTTTTTCATAGA+TGG | + | chr1_2:7447883-7447902 | Msa0053030:intron | 30.0% |
| ! | CTAGTAGGAGTATAAATAAG+GGG | + | chr1_2:7448046-7448065 | Msa0053030:intron | 30.0% |
| AATAATAAGGACTTGGGAAA+AGG | - | chr1_2:7448172-7448191 | None:intergenic | 30.0% | |
| AAGAATGTGAGACCAATTAT+GGG | - | chr1_2:7448317-7448336 | None:intergenic | 30.0% | |
| TAAGAATGTGAGACCAATTA+TGG | - | chr1_2:7448318-7448337 | None:intergenic | 30.0% | |
| TCATTTCAACAGATACTTTG+CGG | + | chr1_2:7448742-7448761 | Msa0053030:intron | 30.0% | |
| ! | AATGCAACACACATTTTACT+GGG | - | chr1_2:7448817-7448836 | None:intergenic | 30.0% |
| TTGTATTGTATGGTCTTCTA+GGG | - | chr1_2:7449009-7449028 | None:intergenic | 30.0% | |
| CTGTAAATGGTTGTATTGTA+TGG | - | chr1_2:7449019-7449038 | None:intergenic | 30.0% | |
| AACACATCAGAAACTGTAAA+TGG | - | chr1_2:7449032-7449051 | None:intergenic | 30.0% | |
| AGTTTAAACAGAGAATTGGA+AGG | - | chr1_2:7449102-7449121 | None:intergenic | 30.0% | |
| TGTTTAAACTTTGATGTTCC+TGG | + | chr1_2:7449112-7449131 | Msa0053030:intron | 30.0% | |
| TTTCTCTCATATAAACAGAG+CGG | + | chr1_2:7449184-7449203 | Msa0053030:intron | 30.0% | |
| !!! | TCAATTTTGGCTTACTTTGT+TGG | - | chr1_2:7449210-7449229 | None:intergenic | 30.0% |
| TGTTGAGTAGGTAATAGTAA+AGG | + | chr1_2:7449354-7449373 | Msa0053030:intron | 30.0% | |
| !! | GATTTTAGTGTAAACATGGT+AGG | + | chr1_2:7449400-7449419 | Msa0053030:intron | 30.0% |
| ! | AGAATCAAACTGAAGGTTTT+TGG | + | chr1_2:7449445-7449464 | Msa0053030:intron | 30.0% |
| ! | ATCTAAAATATTGTTGGACG+AGG | + | chr1_2:7449473-7449492 | Msa0053030:intron | 30.0% |
| ! | TCTAAAATATTGTTGGACGA+GGG | + | chr1_2:7449474-7449493 | Msa0053030:intron | 30.0% |
| GCAAGTACAAAATTCCTAAA+GGG | - | chr1_2:7449521-7449540 | None:intergenic | 30.0% | |
| AGCAAGTACAAAATTCCTAA+AGG | - | chr1_2:7449522-7449541 | None:intergenic | 30.0% | |
| ATTTGTCCAATGAACGTATT+AGG | + | chr1_2:7449582-7449601 | Msa0053030:intron | 30.0% | |
| CTAATACCTAATACGTTCAT+TGG | - | chr1_2:7449591-7449610 | None:intergenic | 30.0% | |
| ATACTCTTCATAAATCATGG+TGG | + | chr1_2:7449678-7449697 | Msa0053030:intron | 30.0% | |
| AAAACAACTGAACTTGTCTT+TGG | + | chr1_2:7449750-7449769 | Msa0053030:intron | 30.0% | |
| AAACAACTGAACTTGTCTTT+GGG | + | chr1_2:7449751-7449770 | Msa0053030:intron | 30.0% | |
| ! | AAATTTGTGACTTGCCAAAT+CGG | - | chr1_2:7449810-7449829 | None:intergenic | 30.0% |
| CACCCTAACATAAAAAAAAC+TGG | + | chr1_2:7450308-7450327 | Msa0053030:intron | 30.0% | |
| AAAACTGGACAAAATATAGC+TGG | + | chr1_2:7450323-7450342 | Msa0053030:intron | 30.0% | |
| ! | TTAAGCATACAACAGTCTTT+TGG | + | chr1_2:7450380-7450399 | Msa0053030:intron | 30.0% |
| ! | TTCATGACTTTTGAATTAGC+AGG | + | chr1_2:7450468-7450487 | Msa0053030:intron | 30.0% |
| ! | GCTACTATCTTTTACGAAAA+AGG | - | chr1_2:7450572-7450591 | None:intergenic | 30.0% |
| ATTCTTAATCTGTCATGAAC+AGG | - | chr1_2:7450919-7450938 | None:intergenic | 30.0% | |
| TGTTGTCACAAGCAAAAATA+TGG | - | chr1_2:7451088-7451107 | None:intergenic | 30.0% | |
| TCTTTCATGCAAAATCCAAA+TGG | - | chr1_2:7451136-7451155 | None:intergenic | 30.0% | |
| ATTTGCAGTGTTCAAAAGAT+AGG | + | chr1_2:7451155-7451174 | Msa0053030:three_prime_UTR | 30.0% | |
| ! | GTTACTAACCGTTTGGAATT+TGG | + | chr1_2:7446231-7446250 | Msa0053030:five_prime_UTR | 35.0% |
| GAACAAGACCATAATCGAAA+CGG | + | chr1_2:7446358-7446377 | Msa0053030:CDS | 35.0% | |
| AATGAGATTATGATCCTGTG+TGG | - | chr1_2:7446392-7446411 | None:intergenic | 35.0% | |
| ! | CGATTTTTACTGAGAGGTTT+TGG | - | chr1_2:7446448-7446467 | None:intergenic | 35.0% |
| AAGAGAAAGAGAAAGGCTTT+AGG | + | chr1_2:7446481-7446500 | Msa0053030:CDS | 35.0% | |
| AGAAACCTGTCAATGTTGAT+GGG | - | chr1_2:7446520-7446539 | None:intergenic | 35.0% | |
| AAGAAACCTGTCAATGTTGA+TGG | - | chr1_2:7446521-7446540 | None:intergenic | 35.0% | |
| TACATGGTATATACAGCTGT+AGG | + | chr1_2:7446853-7446872 | Msa0053030:CDS | 35.0% | |
| GTCTAAATTCGTGTAGGATA+GGG | + | chr1_2:7446968-7446987 | Msa0053030:intron | 35.0% | |
| TTTGACGAAGCAAAATCAAG+AGG | - | chr1_2:7447252-7447271 | None:intergenic | 35.0% | |
| ! | TGAATGTCAGAGCATTACTT+GGG | - | chr1_2:7447280-7447299 | None:intergenic | 35.0% |
| ! | TTGAATGTCAGAGCATTACT+TGG | - | chr1_2:7447281-7447300 | None:intergenic | 35.0% |
| AAAACAGGATGCATACGTAA+TGG | - | chr1_2:7447316-7447335 | None:intergenic | 35.0% | |
| ! | ATGCATCCTGTTTTACTTGT+AGG | + | chr1_2:7447322-7447341 | Msa0053030:intron | 35.0% |
| ! | GTGTTCTTTTACTTGTATGG+AGG | + | chr1_2:7447675-7447694 | Msa0053030:intron | 35.0% |
| ! | TATTTTGTGGTGCAAGTTTG+TGG | + | chr1_2:7447721-7447740 | Msa0053030:intron | 35.0% |
| TCCAACCTTACAAATGTTGT+TGG | + | chr1_2:7447867-7447886 | Msa0053030:intron | 35.0% | |
| CCAACCTTACAAATGTTGTT+GGG | + | chr1_2:7447868-7447887 | Msa0053030:intron | 35.0% | |
| GAATGTGAGTCTAATCTAGT+AGG | + | chr1_2:7448031-7448050 | Msa0053030:intron | 35.0% | |
| TTTCATCGTTGTCCCATAAT+TGG | + | chr1_2:7448302-7448321 | Msa0053030:intron | 35.0% | |
| GAAATGTTTCCTTGCGAATT+TGG | + | chr1_2:7448576-7448595 | Msa0053030:intron | 35.0% | |
| ACTCATAATCCAAATTCGCA+AGG | - | chr1_2:7448588-7448607 | None:intergenic | 35.0% | |
| ! | CTTTGCGGATTTTCTAATCT+TGG | + | chr1_2:7448757-7448776 | Msa0053030:intron | 35.0% |
| ! | CAATGCAACACACATTTTAC+TGG | - | chr1_2:7448818-7448837 | None:intergenic | 35.0% |
| TACTCACCTCTTCTTAGAAA+AGG | + | chr1_2:7448922-7448941 | Msa0053030:intron | 35.0% | |
| !! | CTCTAACCTTTTCTAAGAAG+AGG | - | chr1_2:7448931-7448950 | None:intergenic | 35.0% |
| AGTTCAGATTCTACCTGATT+TGG | + | chr1_2:7448949-7448968 | Msa0053030:intron | 35.0% | |
| AGATAAGCATAATCAGGTCA+AGG | - | chr1_2:7448980-7448999 | None:intergenic | 35.0% | |
| GTTGTATTGTATGGTCTTCT+AGG | - | chr1_2:7449010-7449029 | None:intergenic | 35.0% | |
| TGGTTAAAATCTGCAAGGTT+GGG | - | chr1_2:7449065-7449084 | None:intergenic | 35.0% | |
| !! | GTTTCTGGTTAAAATCTGCA+AGG | - | chr1_2:7449070-7449089 | None:intergenic | 35.0% |
| ! | AATATTGGTGTTTATCAGCC+AGG | - | chr1_2:7449133-7449152 | None:intergenic | 35.0% |
| ATGTAGGAGAATCAAACTGA+AGG | + | chr1_2:7449438-7449457 | Msa0053030:intron | 35.0% | |
| AAAGGGTGGCTTACAATATT+AGG | - | chr1_2:7449504-7449523 | None:intergenic | 35.0% | |
| AATATTGTAAGCCACCCTTT+AGG | + | chr1_2:7449504-7449523 | Msa0053030:intron | 35.0% | |
| AGTACAAAATTCCTAAAGGG+TGG | - | chr1_2:7449518-7449537 | None:intergenic | 35.0% | |
| !!! | CTTTTTAAAGCTGTCCGATT+TGG | + | chr1_2:7449793-7449812 | Msa0053030:intron | 35.0% |
| AGTAGACTAAGTGTGTGTTT+GGG | + | chr1_2:7450078-7450097 | Msa0053030:intron | 35.0% | |
| GAAGTGAAGTGATTTCTGTT+TGG | + | chr1_2:7450153-7450172 | Msa0053030:intron | 35.0% | |
| ! | AAAGGACTTTTGCATTGAGT+TGG | - | chr1_2:7450232-7450251 | None:intergenic | 35.0% |
| GGACTAAAAGCAACTTTACT+TGG | + | chr1_2:7450282-7450301 | Msa0053030:intron | 35.0% | |
| CTCACAGTTGTAGAAAACAT+AGG | - | chr1_2:7450359-7450378 | None:intergenic | 35.0% | |
| CAATTCCATATATTAGACCG+AGG | + | chr1_2:7450406-7450425 | Msa0053030:intron | 35.0% | |
| ! | AATTTTATGTTCACCTGCCT+CGG | - | chr1_2:7450426-7450445 | None:intergenic | 35.0% |
| AATTAGCAGGCAAAAAGTTC+CGG | + | chr1_2:7450481-7450500 | Msa0053030:intron | 35.0% | |
| AAGTAGGATTGTCAGAAACA+TGG | - | chr1_2:7450840-7450859 | None:intergenic | 35.0% | |
| AGATCATCATCATAGGAAAC+AGG | - | chr1_2:7450943-7450962 | None:intergenic | 35.0% | |
| AAAAAACGTTCCAGGATGAA+GGG | - | chr1_2:7451016-7451035 | None:intergenic | 35.0% | |
| AAAAAAACGTTCCAGGATGA+AGG | - | chr1_2:7451017-7451036 | None:intergenic | 35.0% | |
| GTGTATGGAAAGAAGAAAGA+AGG | - | chr1_2:7451054-7451073 | None:intergenic | 35.0% | |
| ! | ATGGCTGAAAAAGAAGTGTA+TGG | - | chr1_2:7451069-7451088 | None:intergenic | 35.0% |
| TAGAACGTTGTTGAAAAGTG+TGG | + | chr1_2:7451251-7451270 | Msa0053030:three_prime_UTR | 35.0% | |
| AGAAGAAGACGATGTTGAGA+TGG | + | chr1_2:7446297-7446316 | Msa0053030:CDS | 40.0% | |
| ! | TGAGATGGTTGATGTTGAAG+AGG | + | chr1_2:7446312-7446331 | Msa0053030:CDS | 40.0% |
| ! | GAGATGGTTGATGTTGAAGA+GGG | + | chr1_2:7446313-7446332 | Msa0053030:CDS | 40.0% |
| TGATGTTGAAGAGGGTGAAT+TGG | + | chr1_2:7446321-7446340 | Msa0053030:CDS | 40.0% | |
| !! | AGAAAGAGAAAGGCTTTAGG+AGG | + | chr1_2:7446484-7446503 | Msa0053030:CDS | 40.0% |
| GGTTTGTGATAGAGACATGT+CGG | + | chr1_2:7446809-7446828 | Msa0053030:intron | 40.0% | |
| ! | CGATATCGTCAAAGAGGTAT+TGG | + | chr1_2:7446900-7446919 | Msa0053030:intron | 40.0% |
| ! | CAACATTGCAAGGAAGTACA+AGG | - | chr1_2:7446928-7446947 | None:intergenic | 40.0% |
| TGCATGGTCTAAATTCGTGT+AGG | + | chr1_2:7446962-7446981 | Msa0053030:intron | 40.0% | |
| GGTCTAAATTCGTGTAGGAT+AGG | + | chr1_2:7446967-7446986 | Msa0053030:intron | 40.0% | |
| CTTTACGATTGTCCAAACTG+CGG | + | chr1_2:7446994-7447013 | Msa0053030:intron | 40.0% | |
| GAAGCAAAATCAAGAGGACT+GGG | - | chr1_2:7447246-7447265 | None:intergenic | 40.0% | |
| GGAGAACCTACAAGTAAAAC+AGG | - | chr1_2:7447331-7447350 | None:intergenic | 40.0% | |
| ! | GTAGGTTCTCCTTTTTACAC+TGG | + | chr1_2:7447340-7447359 | Msa0053030:intron | 40.0% |
| ACACAATCAAAAGAACACCG+AGG | - | chr1_2:7447382-7447401 | None:intergenic | 40.0% | |
| CAAGTATTCGGAAGTAAGAC+AGG | - | chr1_2:7447613-7447632 | None:intergenic | 40.0% | |
| ! | AAGGAGCACATGCAAGTATT+CGG | - | chr1_2:7447625-7447644 | None:intergenic | 40.0% |
| CATTTGTAAGGTTGGAACCA+AGG | - | chr1_2:7447863-7447882 | None:intergenic | 40.0% | |
| CCCAACAACATTTGTAAGGT+TGG | - | chr1_2:7447871-7447890 | None:intergenic | 40.0% | |
| AATAAGGACTTGGGAAAAGG+AGG | - | chr1_2:7448169-7448188 | None:intergenic | 40.0% | |
| ! | ATTGGTCTCTGAATAGTAGC+AGG | - | chr1_2:7448233-7448252 | None:intergenic | 40.0% |
| ! | GTGAAGTGAGTGCTGTATAA+TGG | + | chr1_2:7448347-7448366 | Msa0053030:intron | 40.0% |
| !! | GCATACTAAAGAAGCATTGC+TGG | - | chr1_2:7448377-7448396 | None:intergenic | 40.0% |
| !! | TTCTAATCTTGGCTTGTCAC+TGG | + | chr1_2:7448768-7448787 | Msa0053030:intron | 40.0% |
| TCCCTTTATTGATGGGAATG+TGG | + | chr1_2:7448876-7448895 | Msa0053030:intron | 40.0% | |
| GCCACATTCCCATCAATAAA+GGG | - | chr1_2:7448880-7448899 | None:intergenic | 40.0% | |
| TGCCACATTCCCATCAATAA+AGG | - | chr1_2:7448881-7448900 | None:intergenic | 40.0% | |
| CTGGTTAAAATCTGCAAGGT+TGG | - | chr1_2:7449066-7449085 | None:intergenic | 40.0% | |
| GAGACAGCCCTAATATATGT+AGG | + | chr1_2:7449422-7449441 | Msa0053030:intron | 40.0% | |
| ! | TACTTGCTGATCAAGCAGTA+AGG | + | chr1_2:7449534-7449553 | Msa0053030:intron | 40.0% |
| TCAAGCAGTAAGGACTTTGT+TGG | + | chr1_2:7449544-7449563 | Msa0053030:intron | 40.0% | |
| GAAAAAAGCAAGAGAGTTCG+AGG | + | chr1_2:7449977-7449996 | Msa0053030:CDS | 40.0% | |
| TGTTCCATTAAGTGCATCGA+CGG | + | chr1_2:7450052-7450071 | Msa0053030:intron | 40.0% | |
| CAGTAGACTAAGTGTGTGTT+TGG | + | chr1_2:7450077-7450096 | Msa0053030:intron | 40.0% | |
| ATTAGCAGGCAAAAAGTTCC+GGG | + | chr1_2:7450482-7450501 | Msa0053030:intron | 40.0% | |
| ! | AACCAAGACTGCTGTTTAGA+TGG | + | chr1_2:7450536-7450555 | Msa0053030:intron | 40.0% |
| AACCATCTAAACAGCAGTCT+TGG | - | chr1_2:7450541-7450560 | None:intergenic | 40.0% | |
| ATGGATGCCTGCTTAAAACT+TGG | - | chr1_2:7450757-7450776 | None:intergenic | 40.0% | |
| ! | AGAATCCTCCTCTTTTTGCA+TGG | - | chr1_2:7450776-7450795 | None:intergenic | 40.0% |
| TGCGCACTAGAAAATGTACA+AGG | - | chr1_2:7450811-7450830 | None:intergenic | 40.0% | |
| !! | TACATTTTCTAGTGCGCATC+AGG | + | chr1_2:7450813-7450832 | Msa0053030:CDS | 40.0% |
| !! | ACATTTTCTAGTGCGCATCA+GGG | + | chr1_2:7450814-7450833 | Msa0053030:CDS | 40.0% |
| ! | ACAGGAACACGTTTCTTTTC+AGG | - | chr1_2:7450901-7450920 | None:intergenic | 40.0% |
| ! | TCCTATGATGATGATCTGCT+TGG | + | chr1_2:7450946-7450965 | Msa0053030:CDS | 40.0% |
| TCCAAGCAGATCATCATCAT+AGG | - | chr1_2:7450950-7450969 | None:intergenic | 40.0% | |
| TGATGTAACCTTGCCTTGAA+TGG | + | chr1_2:7450984-7451003 | Msa0053030:exon | 40.0% | |
| !! | TGAAGGGCTTTTTCCATTCA+AGG | - | chr1_2:7451000-7451019 | None:intergenic | 40.0% |
| TGCTTGTGACAACAAGTTCA+CGG | + | chr1_2:7451094-7451113 | Msa0053030:three_prime_UTR | 40.0% | |
| ! | ACGTTGTTGAAAAGTGTGGT+TGG | + | chr1_2:7451255-7451274 | Msa0053030:three_prime_UTR | 40.0% |
| CTCGAGAGTTACTAACCGTT+TGG | + | chr1_2:7446224-7446243 | Msa0053030:five_prime_UTR | 45.0% | |
| ! | AACCGTTTGGAATTTGGGCA+TGG | + | chr1_2:7446237-7446256 | Msa0053030:exon | 45.0% |
| CTCCATGCCCAAATTCCAAA+CGG | - | chr1_2:7446242-7446261 | None:intergenic | 45.0% | |
| ! | GTTTGGAATTTGGGCATGGA+GGG | + | chr1_2:7446241-7446260 | Msa0053030:exon | 45.0% |
| GAGATTATGATCCTGTGTGG+CGG | - | chr1_2:7446389-7446408 | None:intergenic | 45.0% | |
| ! | CGCTTCCGATTTTTACTGAG+AGG | - | chr1_2:7446454-7446473 | None:intergenic | 45.0% |
| !! | GAGAAAGGCTTTAGGAGGAT+CGG | + | chr1_2:7446489-7446508 | Msa0053030:CDS | 45.0% |
| ATGCACCCATCAACATTGAC+AGG | + | chr1_2:7446512-7446531 | Msa0053030:CDS | 45.0% | |
| TATACAGCTGTAGGTTGCCT+TGG | + | chr1_2:7446862-7446881 | Msa0053030:CDS | 45.0% | |
| ATACAGCTGTAGGTTGCCTT+GGG | + | chr1_2:7446863-7446882 | Msa0053030:CDS | 45.0% | |
| GTTGAGCGATATCGTCAAAG+AGG | + | chr1_2:7446894-7446913 | Msa0053030:CDS | 45.0% | |
| CGAAGCAAAATCAAGAGGAC+TGG | - | chr1_2:7447247-7447266 | None:intergenic | 45.0% | |
| GATATTTGGGGGTGAGTTTG+AGG | + | chr1_2:7447418-7447437 | Msa0053030:intron | 45.0% | |
| TGTGGTGTTTGCCTTGTGTA+TGG | + | chr1_2:7447739-7447758 | Msa0053030:intron | 45.0% | |
| TAGCCACTTCAACCTCTCTT+GGG | + | chr1_2:7447824-7447843 | Msa0053030:intron | 45.0% | |
| TAAGGTTGGAACCAAGGTTG+AGG | - | chr1_2:7447857-7447876 | None:intergenic | 45.0% | |
| AGTAGCAGGACAAGTCACAA+AGG | - | chr1_2:7448219-7448238 | None:intergenic | 45.0% | |
| CAGCACTCACTTCACTTCAA+TGG | - | chr1_2:7448342-7448361 | None:intergenic | 45.0% | |
| ! | GTCTTTGCACTCACGTTTTG+TGG | + | chr1_2:7448404-7448423 | Msa0053030:intron | 45.0% |
| !!! | GATAAGGTTTTAGGCGCAGA+AGG | - | chr1_2:7448724-7448743 | None:intergenic | 45.0% |
| TTACTGGGAGATGAAGAGAG+AGG | - | chr1_2:7448802-7448821 | None:intergenic | 45.0% | |
| TGGGAATGTGGCATTGTTTG+AGG | + | chr1_2:7448888-7448907 | Msa0053030:intron | 45.0% | |
| ! | GGAAGGAGCAAACTAGTTTC+TGG | - | chr1_2:7449085-7449104 | None:intergenic | 45.0% |
| !! | AAGGAACAATTGATGGCGCT+AGG | + | chr1_2:7449373-7449392 | Msa0053030:intron | 45.0% |
| CTGCTGATGGTAAGCGATTT+CGG | + | chr1_2:7449889-7449908 | Msa0053030:CDS | 45.0% | |
| ATGGTAAGCGATTTCGGACA+GGG | + | chr1_2:7449895-7449914 | Msa0053030:CDS | 45.0% | |
| TCCATATATTAGACCGAGGC+AGG | + | chr1_2:7450410-7450429 | Msa0053030:intron | 45.0% | |
| ACCTGCCTCGGTCTAATATA+TGG | - | chr1_2:7450414-7450433 | None:intergenic | 45.0% | |
| ! | GACTGCTGTTTAGATGGTTC+CGG | + | chr1_2:7450542-7450561 | Msa0053030:intron | 45.0% |
| ! | ACTGCTGTTTAGATGGTTCC+GGG | + | chr1_2:7450543-7450562 | Msa0053030:intron | 45.0% |
| ! | CTTTTACGAAAAAGGCAGCC+CGG | - | chr1_2:7450564-7450583 | None:intergenic | 45.0% |
| AGAGGAGGATTCTTCTCAAG+AGG | + | chr1_2:7450783-7450802 | Msa0053030:CDS | 45.0% | |
| CAAGATCAAGATAAACCGCC+AGG | + | chr1_2:7450874-7450893 | Msa0053030:CDS | 45.0% | |
| !! | ACACGTTTCTTTTCAGGACC+TGG | - | chr1_2:7450895-7450914 | None:intergenic | 45.0% |
| !! | GGCTTTTTCCATTCAAGGCA+AGG | - | chr1_2:7450995-7451014 | None:intergenic | 45.0% |
| ATGGAAAAAGCCCTTCATCC+TGG | + | chr1_2:7451003-7451022 | Msa0053030:three_prime_UTR | 45.0% | |
| TGTGACAACAAGTTCACGGA+TGG | + | chr1_2:7451098-7451117 | Msa0053030:three_prime_UTR | 45.0% | |
| TGGAGCAGTATGGTTCCATT+TGG | + | chr1_2:7451118-7451137 | Msa0053030:three_prime_UTR | 45.0% | |
| !! | AATAAAAATATGATATATTT+AGG | - | chr1_2:7449238-7449257 | None:intergenic | 5.0% |
| ! | CGTTTGGAATTTGGGCATGG+AGG | + | chr1_2:7446240-7446259 | Msa0053030:exon | 50.0% |
| TTGCAATTGCAGCCGCAGTT+TGG | - | chr1_2:7447009-7447028 | None:intergenic | 50.0% | |
| GGTGTTTGCCTTGTGTATGG+TGG | + | chr1_2:7447742-7447761 | Msa0053030:intron | 50.0% | |
| GCAGAGAACCACCATACACA+AGG | - | chr1_2:7447753-7447772 | None:intergenic | 50.0% | |
| GTAGCCACTTCAACCTCTCT+TGG | + | chr1_2:7447823-7447842 | Msa0053030:intron | 50.0% | |
| AGCCACTTCAACCTCTCTTG+GGG | + | chr1_2:7447825-7447844 | Msa0053030:intron | 50.0% | |
| GGACTTGGGAAAAGGAGGAA+AGG | - | chr1_2:7448164-7448183 | None:intergenic | 50.0% | |
| GCAGGACAAGTCACAAAGGA+AGG | - | chr1_2:7448215-7448234 | None:intergenic | 50.0% | |
| CGTGAGTGCAAAGACAGATG+AGG | - | chr1_2:7448399-7448418 | None:intergenic | 50.0% | |
| !!! | GGTTTTAGGCGCAGAAGGAA+AGG | - | chr1_2:7448719-7448738 | None:intergenic | 50.0% |
| GGTCAAGGCTGAACCAAATC+AGG | - | chr1_2:7448965-7448984 | None:intergenic | 50.0% | |
| GTAGACGCAATACAGTCCTG+TGG | + | chr1_2:7449855-7449874 | Msa0053030:CDS | 50.0% | |
| GATGGTAAGCGATTTCGGAC+AGG | + | chr1_2:7449894-7449913 | Msa0053030:CDS | 50.0% | |
| TGGTAAGCGATTTCGGACAG+GGG | + | chr1_2:7449896-7449915 | Msa0053030:CDS | 50.0% | |
| TGTGCCGTCGATGCACTTAA+TGG | - | chr1_2:7450059-7450078 | None:intergenic | 50.0% | |
| !!! | CAGGCAGCCAAGTTTTAAGC+AGG | + | chr1_2:7450747-7450766 | Msa0053030:CDS | 50.0% |
| GCAGGCATCCATGCAAAAAG+AGG | + | chr1_2:7450765-7450784 | Msa0053030:CDS | 50.0% | |
| GGCATCCATGCAAAAAGAGG+AGG | + | chr1_2:7450768-7450787 | Msa0053030:CDS | 50.0% | |
| TGCATTTGCGATGCGCAAGT+AGG | - | chr1_2:7450856-7450875 | None:intergenic | 50.0% | |
| !! | CGTTTCTTTTCAGGACCTGG+CGG | - | chr1_2:7450892-7450911 | None:intergenic | 50.0% |
| AGTTCACGGATGGAGCAGTA+TGG | + | chr1_2:7451108-7451127 | Msa0053030:three_prime_UTR | 50.0% | |
| TGGAATTTGGGCATGGAGGG+TGG | + | chr1_2:7446244-7446263 | Msa0053030:exon | 55.0% | |
| CGGCGACACCGTTTCGATTA+TGG | - | chr1_2:7446369-7446388 | None:intergenic | 55.0% | |
| CGCTCAACGCAGAAATCCCA+AGG | - | chr1_2:7446882-7446901 | None:intergenic | 55.0% | |
| CACCCCAAGAGAGGTTGAAG+TGG | - | chr1_2:7447830-7447849 | None:intergenic | 55.0% | |
| CACTTCAACCTCTCTTGGGG+TGG | + | chr1_2:7447828-7447847 | Msa0053030:intron | 55.0% | |
| TGAGGAAACCACCCCAAGAG+AGG | - | chr1_2:7447839-7447858 | None:intergenic | 55.0% | |
| TGGGGTGGTTTCCTCAACCT+TGG | + | chr1_2:7447843-7447862 | Msa0053030:intron | 55.0% | |
| GACGCAATACAGTCCTGTGG+AGG | + | chr1_2:7449858-7449877 | Msa0053030:CDS | 55.0% | |
| GCTTACCATCAGCAGTCTGC+TGG | - | chr1_2:7449884-7449903 | None:intergenic | 55.0% | |
| GGTAAGCGATTTCGGACAGG+GGG | + | chr1_2:7449897-7449916 | Msa0053030:CDS | 55.0% | |
| AAGCGATTTCGGACAGGGGG+TGG | + | chr1_2:7449900-7449919 | Msa0053030:CDS | 60.0% | |
| GGACAGGGGGTGGTGTATTG+TGG | + | chr1_2:7449910-7449929 | Msa0053030:CDS | 60.0% | |
| !! | AAACGGTGTCGCCGCCACAC+AGG | + | chr1_2:7446375-7446394 | Msa0053030:CDS | 65.0% |
| ! | AGCAGTCTGCTGGCCTCCAC+AGG | - | chr1_2:7449874-7449893 | None:intergenic | 65.0% |
| GGAGGCCAGCAGACTGCTGA+TGG | + | chr1_2:7449876-7449895 | Msa0053030:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 7446219 | 7451304 | 7446219 | ID=Msa0053030;Name=Msa0053030 |
| chr1_2 | mRNA | 7446219 | 7451304 | 7446219 | ID=Msa0053030-mRNA-1;Parent=Msa0053030;Name=Msa0053030-mRNA-1;_AED=0.07;_eAED=0.07;_QI=37|1|1|1|1|1|4|302|263 |
| chr1_2 | exon | 7446219 | 7446533 | 7446219 | ID=Msa0053030-mRNA-1:exon:2515;Parent=Msa0053030-mRNA-1 |
| chr1_2 | exon | 7446810 | 7446915 | 7446810 | ID=Msa0053030-mRNA-1:exon:2516;Parent=Msa0053030-mRNA-1 |
| chr1_2 | exon | 7449855 | 7449998 | 7449855 | ID=Msa0053030-mRNA-1:exon:2517;Parent=Msa0053030-mRNA-1 |
| chr1_2 | exon | 7450739 | 7451304 | 7450739 | ID=Msa0053030-mRNA-1:exon:2518;Parent=Msa0053030-mRNA-1 |
| chr1_2 | five_prime_UTR | 7446219 | 7446255 | 7446219 | ID=Msa0053030-mRNA-1:five_prime_utr;Parent=Msa0053030-mRNA-1 |
| chr1_2 | CDS | 7446256 | 7446533 | 7446256 | ID=Msa0053030-mRNA-1:cds;Parent=Msa0053030-mRNA-1 |
| chr1_2 | CDS | 7446810 | 7446915 | 7446810 | ID=Msa0053030-mRNA-1:cds;Parent=Msa0053030-mRNA-1 |
| chr1_2 | CDS | 7449855 | 7449998 | 7449855 | ID=Msa0053030-mRNA-1:cds;Parent=Msa0053030-mRNA-1 |
| chr1_2 | CDS | 7450739 | 7451002 | 7450739 | ID=Msa0053030-mRNA-1:cds;Parent=Msa0053030-mRNA-1 |
| chr1_2 | three_prime_UTR | 7451003 | 7451304 | 7451003 | ID=Msa0053030-mRNA-1:three_prime_utr;Parent=Msa0053030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
