AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0471590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471590 MtrunA17_Chr3g0127251 97.484 159 4 0 1 159 1 159 3.15e-113 321
Msa0471590 MtrunA17_Chr4g0013601 27.044 159 108 6 1 154 1 156 4.38e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471590 AT1G09150.1 83.019 159 27 0 1 159 1 159 1.60e-95 276

Find 61 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAATTTCTTCATTATATC+TGG 0.192913 3_3:-73968765 None:intergenic
CACCTCTTATAGTTGCTAAA+TGG 0.288298 3_3:+73967465 Msa0471590:CDS
AAAGCAATCAACAAGGGAAT+TGG 0.322873 3_3:+73969500 Msa0471590:CDS
ATTATCTCAATGATGGTCTT+TGG 0.327245 3_3:+73969537 Msa0471590:CDS
TGTCCTGGTCTTACATCTCC+TGG 0.329472 3_3:+73968837 Msa0471590:CDS
AAATATGAACTTTACATTGA+TGG 0.334633 3_3:-73967680 None:intergenic
GGGTGTTCTGGATGAGGAAG+TGG 0.336037 3_3:+73968860 Msa0471590:CDS
AACTATAAGAGGTGACTTCT+TGG 0.338003 3_3:-73967456 None:intergenic
AAAATTTCTAGTATTGTGTT+AGG 0.350915 3_3:+73970203 Msa0471590:three_prime_UTR
TGGTGCAATAAGATTTGTTT+TGG 0.351364 3_3:+73968797 Msa0471590:CDS
AAGCAATCAACAAGGGAATT+GGG 0.354037 3_3:+73969501 Msa0471590:CDS
CGCTTATGATCCCTAAAATC+TGG 0.363912 3_3:-73969878 None:intergenic
GTGTTCTGGATGAGGAAGTG+GGG 0.404683 3_3:+73968862 Msa0471590:CDS
TGGATCAAGTTCCAGAAAAC+AGG 0.408316 3_3:-73969858 None:intergenic
GAGAGCCGCGATGCCAACTT+AGG 0.431618 3_3:+73969827 Msa0471590:CDS
AACCATTTAGCAACTATAAG+AGG 0.435947 3_3:-73967467 None:intergenic
GGTGTTCTGGATGAGGAAGT+GGG 0.436303 3_3:+73968861 Msa0471590:CDS
GTCCTGGTCTTACATCTCCT+GGG 0.439119 3_3:+73968838 Msa0471590:CDS
TCCAACACTGGTTCAAGTCC+TGG 0.460743 3_3:-73967422 None:intergenic
CAAACAAAATAAAGATCAAA+TGG 0.460987 3_3:-73970105 None:intergenic
AAGAAGTTCAACTACTTTCG+TGG 0.462951 3_3:+73969470 Msa0471590:intron
ACTATAAGAGGTGACTTCTT+GGG 0.475825 3_3:-73967455 None:intergenic
GCGTGGTTCAGCCACTCAAT+AGG 0.477544 3_3:-73970055 None:intergenic
CACACAAGTTTATTCAAAGA+TGG 0.478881 3_3:+73970077 Msa0471590:three_prime_UTR
CTTATGGTGCGTTGAGTTGA+AGG 0.481791 3_3:-73966708 None:intergenic
AAACAGCATGCCCTTGCCAT+TGG 0.482054 3_3:+73969023 Msa0471590:CDS
TTTCTCATTTCAGGCCATCA+TGG 0.485619 3_3:+73968992 Msa0471590:intron
TAGTCAGAACCATCTCAATC+TGG 0.488658 3_3:+73967587 Msa0471590:intron
TGTTCTGGATGAGGAAGTGG+GGG 0.494533 3_3:+73968863 Msa0471590:CDS
AGTCGCAAGGTAGGCATGTA+CGG 0.512614 3_3:-73967654 None:intergenic
AGAGCCGCGATGCCAACTTA+GGG 0.516621 3_3:+73969828 Msa0471590:CDS
AACTTGCATTATCTCAATGA+TGG 0.525811 3_3:+73969530 Msa0471590:CDS
ATTACTAAACTGCAGTATCC+AGG 0.527390 3_3:+73967404 Msa0471590:intron
CAAAATAAAGATCAAATGGC+AGG 0.532151 3_3:-73970101 None:intergenic
ACAGGACTGCATCCCTAAGT+TGG 0.534258 3_3:-73969840 None:intergenic
CTCATGTAAACAGTAAAGAA+AGG 0.535169 3_3:+73969925 Msa0471590:three_prime_UTR
GAACCATCTCAATCTGGTTG+TGG 0.552638 3_3:+73967593 Msa0471590:CDS
ATGTAACTTGTGGAATACAC+TGG 0.559241 3_3:+73969994 Msa0471590:three_prime_UTR
GGTGCAAACATAATGTGTCC+TGG 0.560571 3_3:+73968822 Msa0471590:CDS
GTATAATAAAACAAACTAGC+AGG 0.560702 3_3:-73969903 None:intergenic
TCCTGGTCTTACATCTCCTG+GGG 0.566559 3_3:+73968839 Msa0471590:CDS
TCCAGGACTTGAACCAGTGT+TGG 0.569000 3_3:+73967421 Msa0471590:CDS
TCTCAATGATGGTCTTTGGA+AGG 0.575361 3_3:+73969541 Msa0471590:CDS
AGCAATCAACAAGGGAATTG+GGG 0.580148 3_3:+73969502 Msa0471590:CDS
ACGTCAAAGTATTGCAGATG+AGG 0.585598 3_3:+73967141 Msa0471590:CDS
AGTTCTGTACTCCTATTGAG+TGG 0.595563 3_3:+73970044 Msa0471590:three_prime_UTR
TGATGGAGAAGTCGCAAGGT+AGG 0.596779 3_3:-73967663 None:intergenic
TTTCAGGCCATCATGGCTGA+AGG 0.607923 3_3:+73968999 Msa0471590:intron
TCACCACAACCAGATTGAGA+TGG 0.615908 3_3:-73967596 None:intergenic
ACGCAACAGTGTAACTCTCG+AGG 0.621227 3_3:-73966612 None:intergenic
ACATTGATGGAGAAGTCGCA+AGG 0.629589 3_3:-73967667 None:intergenic
CGCAACAGTGTAACTCTCGA+GGG 0.639969 3_3:-73966611 None:intergenic
TTTGAATAAACTTGTGTGCG+TGG 0.643292 3_3:-73970072 None:intergenic
TTCAGAAAAGCAATCAACAA+GGG 0.652972 3_3:+73969494 Msa0471590:CDS
GGAAGTATATCATCCAACAC+TGG 0.658326 3_3:-73967434 None:intergenic
TGTAACTTGTGGAATACACT+GGG 0.662827 3_3:+73969995 Msa0471590:three_prime_UTR
TTTCAGAAAAGCAATCAACA+AGG 0.684568 3_3:+73969493 Msa0471590:CDS
CCTGGTCTTACATCTCCTGG+GGG 0.695202 3_3:+73968840 Msa0471590:CDS
AAACAAATCTTATTGCACCA+CGG 0.718835 3_3:-73968794 None:intergenic
GCATCCCTAAGTTGGCATCG+CGG 0.749002 3_3:-73969832 None:intergenic
AAGAAATTACAAGTTGACCG+TGG 0.749697 3_3:+73968777 Msa0471590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTTAATTTATTTTT+CGG + chr3_3:73966813-73966832 Msa0471590:intron 0.0%
!!! GAAATTAAATCATTTTTTTA+GGG - chr3_3:73966886-73966905 None:intergenic 10.0%
!! AAATGATAATTGATAAATTA+CGG - chr3_3:73968612-73968631 None:intergenic 10.0%
!! TATAATATATTAAAAATCAG+CGG - chr3_3:73969740-73969759 None:intergenic 10.0%
!! AAAACTAATATAGAAGAAAA+TGG - chr3_3:73966790-73966809 None:intergenic 15.0%
!!! CGAAATTAAATCATTTTTTT+AGG - chr3_3:73966887-73966906 None:intergenic 15.0%
!! CATATATTATCTTGATTAAA+AGG - chr3_3:73968405-73968424 None:intergenic 15.0%
!! AGAATAAAATAAAGATTGTT+AGG - chr3_3:73969764-73969783 None:intergenic 15.0%
!!! ATTTTATTCTATATTGTAGA+TGG + chr3_3:73969774-73969793 Msa0471590:intron 15.0%
!!! TACTAGAAATTTTAAGTAAA+TGG - chr3_3:73970196-73970215 None:intergenic 15.0%
!!! AATCATTTTTTTAGGGTTTA+GGG - chr3_3:73966879-73966898 None:intergenic 20.0%
!!! AAATCATTTTTTTAGGGTTT+AGG - chr3_3:73966880-73966899 None:intergenic 20.0%
!! AGGTACTAAAAAAAAAAAGT+GGG - chr3_3:73966927-73966946 None:intergenic 20.0%
!! AACCAACACAAAAAAAAAAA+AGG - chr3_3:73967175-73967194 None:intergenic 20.0%
!! AATAAAAAAGATGCATAGTT+TGG - chr3_3:73967341-73967360 None:intergenic 20.0%
!! AAATATGAACTTTACATTGA+TGG - chr3_3:73967683-73967702 None:intergenic 20.0%
!! TTTGTAATATTCTTTCATCT+GGG + chr3_3:73967721-73967740 Msa0471590:intron 20.0%
!!! TTTTTTGAGTAATGCATATA+TGG + chr3_3:73967780-73967799 Msa0471590:intron 20.0%
!! TATGGATATAAACTACTTAT+AGG + chr3_3:73967798-73967817 Msa0471590:intron 20.0%
!! ATGCATATATAAAGTAAAAG+AGG - chr3_3:73968071-73968090 None:intergenic 20.0%
!! CATATATTATCTGGATTAAA+AGG - chr3_3:73968366-73968385 None:intergenic 20.0%
!! TGTAATTTCTTCATTATATC+TGG - chr3_3:73968768-73968787 None:intergenic 20.0%
!! CCATTAAAATTTATACTACA+TGG - chr3_3:73969352-73969371 None:intergenic 20.0%
!!! CCATGTAGTATAAATTTTAA+TGG + chr3_3:73969349-73969368 Msa0471590:intron 20.0%
!! TAATATGTACATGAATACAA+AGG - chr3_3:73969587-73969606 None:intergenic 20.0%
!! AAATAAGTATACATACATAG+TGG + chr3_3:73969606-73969625 Msa0471590:intron 20.0%
!!! TCTTATCTCTTTTGTTTATT+TGG + chr3_3:73969676-73969695 Msa0471590:intron 20.0%
!!! CTTTTGTTTATTTGGAATTT+TGG + chr3_3:73969684-73969703 Msa0471590:intron 20.0%
!! TTTGGATAGTATAACTTAAT+TGG + chr3_3:73969702-73969721 Msa0471590:intron 20.0%
!! TTGGATAGTATAACTTAATT+GGG + chr3_3:73969703-73969722 Msa0471590:intron 20.0%
!! CAAACAAAATAAAGATCAAA+TGG - chr3_3:73970108-73970127 None:intergenic 20.0%
!!! CATTTGATCTTTATTTTGTT+TGG + chr3_3:73970106-73970125 Msa0471590:three_prime_UTR 20.0%
!!! AAAATTTCTAGTATTGTGTT+AGG + chr3_3:73970203-73970222 Msa0471590:three_prime_UTR 20.0%
!!! TGTACTTTTTGAACATCTTA+TGG - chr3_3:73966727-73966746 None:intergenic 25.0%
! TAAAAAAAAAAAGTGGGCAT+TGG - chr3_3:73966921-73966940 None:intergenic 25.0%
!! GAGGTACTAAAAAAAAAAAG+TGG - chr3_3:73966928-73966947 None:intergenic 25.0%
! TAATGAACAATTGTGTAAAG+AGG - chr3_3:73966947-73966966 None:intergenic 25.0%
! CATACAATTAGTGATATCTA+AGG - chr3_3:73967206-73967225 None:intergenic 25.0%
! TAGATATCACTAATTGTATG+TGG + chr3_3:73967206-73967225 Msa0471590:intron 25.0%
! AGATATCACTAATTGTATGT+GGG + chr3_3:73967207-73967226 Msa0471590:intron 25.0%
!! TCGTGATTCTGATAATTTTA+TGG + chr3_3:73967291-73967310 Msa0471590:intron 25.0%
! TAGGTTAATTAATAGTCACA+TGG - chr3_3:73967383-73967402 None:intergenic 25.0%
! ATACTGCAGTTTAGTAATTT+AGG - chr3_3:73967402-73967421 None:intergenic 25.0%
! GTTTGTAATATTCTTTCATC+TGG + chr3_3:73967720-73967739 Msa0471590:intron 25.0%
!! GAATACATGATAATGTTGAT+TGG + chr3_3:73967938-73967957 Msa0471590:intron 25.0%
! TATGTGTTGAAGATATTATC+TGG - chr3_3:73968120-73968139 None:intergenic 25.0%
! ATTAAAACTAGCAAAACTCT+TGG - chr3_3:73968213-73968232 None:intergenic 25.0%
! AGAAGAACACATATATTATC+TGG - chr3_3:73968375-73968394 None:intergenic 25.0%
! TATCTTGATTAAAAGGTTTG+AGG - chr3_3:73968398-73968417 None:intergenic 25.0%
!!! CTTCCTACATTTTAAAAAAG+AGG - chr3_3:73968585-73968604 None:intergenic 25.0%
! AAACAATCTACAAAACACAA+TGG - chr3_3:73968909-73968928 None:intergenic 25.0%
! TGAGAAAAATACATGATATG+AGG - chr3_3:73968979-73968998 None:intergenic 25.0%
!! TCATGTATTTTTCTCATTTC+AGG + chr3_3:73968983-73969002 Msa0471590:intron 25.0%
!! TGACATTTTTGTAAATCCAA+TGG - chr3_3:73969042-73969061 None:intergenic 25.0%
! TAGAGATTAGAGATAAGATA+TGG + chr3_3:73969409-73969428 Msa0471590:intron 25.0%
! GTATAATAAAACAAACTAGC+AGG - chr3_3:73969906-73969925 None:intergenic 25.0%
!! TGTAGATTTTATGTAACTTG+TGG + chr3_3:73969984-73970003 Msa0471590:three_prime_UTR 25.0%
!!! TGATCTTTATTTTGTTTGGT+AGG + chr3_3:73970110-73970129 Msa0471590:three_prime_UTR 25.0%
! TTTCAGATTTTCATCTGAAG+AGG + chr3_3:73967075-73967094 Msa0471590:intron 30.0%
!!! CGCCTTTTTTTTTTTTGTGT+TGG + chr3_3:73967170-73967189 Msa0471590:intron 30.0%
TTGAAGCTTAAACAGAATCA+CGG - chr3_3:73967240-73967259 None:intergenic 30.0%
TTGGTGAATTAATGCATGTT+TGG - chr3_3:73967322-73967341 None:intergenic 30.0%
AACCATTTAGCAACTATAAG+AGG - chr3_3:73967470-73967489 None:intergenic 30.0%
! TTGTAGTTCTATTTGCTTTG+AGG + chr3_3:73967500-73967519 Msa0471590:intron 30.0%
TCACGAACACTAAAAAACAA+AGG - chr3_3:73967630-73967649 None:intergenic 30.0%
!!! TTGTTTTTTAGTGTTCGTGA+TGG + chr3_3:73967630-73967649 Msa0471590:CDS 30.0%
TAATATTCTTTCATCTGGGA+GGG + chr3_3:73967725-73967744 Msa0471590:intron 30.0%
ACATATGGTGAATACTGAAT+AGG + chr3_3:73967843-73967862 Msa0471590:intron 30.0%
AGAGAAAAACAATAGCTGTT+TGG + chr3_3:73967890-73967909 Msa0471590:intron 30.0%
CTCTATACTAGAAAGTTTCT+CGG - chr3_3:73967919-73967938 None:intergenic 30.0%
! ACATGATAATGTTGATTGGT+TGG + chr3_3:73967942-73967961 Msa0471590:intron 30.0%
ACTACCACTCAATAATAAGA+CGG - chr3_3:73968165-73968184 None:intergenic 30.0%
GAGAGAACATAAAGATCATA+CGG + chr3_3:73968239-73968258 Msa0471590:intron 30.0%
! AAAGTTTTCTCAGTTCTCAA+AGG - chr3_3:73968313-73968332 None:intergenic 30.0%
! AGGTTTGAGGAGTATAAATA+GGG - chr3_3:73968346-73968365 None:intergenic 30.0%
! AAGGTTTGAGGAGTATAAAT+AGG - chr3_3:73968347-73968366 None:intergenic 30.0%
TATCTGGATTAAAAGGTTTG+AGG - chr3_3:73968359-73968378 None:intergenic 30.0%
TCTCAAGGTTATCTAAATGT+GGG - chr3_3:73968451-73968470 None:intergenic 30.0%
ACATTTAGATAACCTTGAGA+CGG + chr3_3:73968451-73968470 Msa0471590:intron 30.0%
! AAACAAACCATTCTAGGAAA+TGG + chr3_3:73968485-73968504 Msa0471590:intron 30.0%
TAATGACCAAAGTGAGAAAA+TGG - chr3_3:73968548-73968567 None:intergenic 30.0%
TTTAAAAAAGAGGACGAATG+CGG - chr3_3:73968575-73968594 None:intergenic 30.0%
!!! CGTCCTCTTTTTTAAAATGT+AGG + chr3_3:73968579-73968598 Msa0471590:intron 30.0%
! GAAACTCTTCCATGTTTTAT+AGG - chr3_3:73968660-73968679 None:intergenic 30.0%
TAAAACATGGAAGAGTTTCT+AGG + chr3_3:73968661-73968680 Msa0471590:intron 30.0%
AAACAAATCTTATTGCACCA+CGG - chr3_3:73968797-73968816 None:intergenic 30.0%
!! TGGTGCAATAAGATTTGTTT+TGG + chr3_3:73968797-73968816 Msa0471590:CDS 30.0%
!!! TGCAATAAGATTTGTTTTGG+CGG + chr3_3:73968800-73968819 Msa0471590:CDS 30.0%
! TTTTGTAAATCCAATGGCAA+GGG - chr3_3:73969036-73969055 None:intergenic 30.0%
! TTTTTGTAAATCCAATGGCA+AGG - chr3_3:73969037-73969056 None:intergenic 30.0%
AAGAGGCTCTTCATTTATTT+GGG - chr3_3:73969143-73969162 None:intergenic 30.0%
AAAGAGGCTCTTCATTTATT+TGG - chr3_3:73969144-73969163 None:intergenic 30.0%
! TAAAGTGGAAAACTTGTTTG+TGG - chr3_3:73969326-73969345 None:intergenic 30.0%
TATACTACATGGCAATAAAG+TGG - chr3_3:73969341-73969360 None:intergenic 30.0%
!!! TAGCCCTATGTTTTATTTGA+GGG - chr3_3:73969380-73969399 None:intergenic 30.0%
!!! TTAGCCCTATGTTTTATTTG+AGG - chr3_3:73969381-73969400 None:intergenic 30.0%
AATAAAACATAGGGCTAATG+TGG + chr3_3:73969383-73969402 Msa0471590:intron 30.0%
TTTCAGAAAAGCAATCAACA+AGG + chr3_3:73969493-73969512 Msa0471590:CDS 30.0%
TTCAGAAAAGCAATCAACAA+GGG + chr3_3:73969494-73969513 Msa0471590:CDS 30.0%
AACTTGCATTATCTCAATGA+TGG + chr3_3:73969530-73969549 Msa0471590:CDS 30.0%
ATTATCTCAATGATGGTCTT+TGG + chr3_3:73969537-73969556 Msa0471590:CDS 30.0%
TATTAAAAATCAGCGGTAAC+TGG - chr3_3:73969733-73969752 None:intergenic 30.0%
CTCATGTAAACAGTAAAGAA+AGG + chr3_3:73969925-73969944 Msa0471590:three_prime_UTR 30.0%
CACACAAGTTTATTCAAAGA+TGG + chr3_3:73970077-73970096 Msa0471590:three_prime_UTR 30.0%
CAAAATAAAGATCAAATGGC+AGG - chr3_3:73970104-73970123 None:intergenic 30.0%
!!! TCTTTATTTTGTTTGGTAGG+AGG + chr3_3:73970113-73970132 Msa0471590:three_prime_UTR 30.0%
TCACTAATTGTATGTGGGTT+TGG + chr3_3:73967212-73967231 Msa0471590:intron 35.0%
!!! ATGTTGTTTTTGCCTAACCA+CGG + chr3_3:73967261-73967280 Msa0471590:intron 35.0%
ATTACTAAACTGCAGTATCC+AGG + chr3_3:73967404-73967423 Msa0471590:intron 35.0%
ACTATAAGAGGTGACTTCTT+GGG - chr3_3:73967458-73967477 None:intergenic 35.0%
AACTATAAGAGGTGACTTCT+TGG - chr3_3:73967459-73967478 None:intergenic 35.0%
CACCTCTTATAGTTGCTAAA+TGG + chr3_3:73967465-73967484 Msa0471590:CDS 35.0%
GTAATATTCTTTCATCTGGG+AGG + chr3_3:73967724-73967743 Msa0471590:intron 35.0%
AATATTCTTTCATCTGGGAG+GGG + chr3_3:73967726-73967745 Msa0471590:intron 35.0%
TTCACCATATGTGTTGAACA+CGG - chr3_3:73967835-73967854 None:intergenic 35.0%
AACTGTACTGTTCATACCAA+AGG + chr3_3:73967978-73967997 Msa0471590:intron 35.0%
ACTGTACTGTTCATACCAAA+GGG + chr3_3:73967979-73967998 Msa0471590:intron 35.0%
AGCAACATCAATGTTCTGAT+TGG + chr3_3:73968013-73968032 Msa0471590:intron 35.0%
! GGTTTGAGGAGTATAAATAG+GGG - chr3_3:73968345-73968364 None:intergenic 35.0%
CTCAAGGTTATCTAAATGTG+GGG - chr3_3:73968450-73968469 None:intergenic 35.0%
GTCTCAAGGTTATCTAAATG+TGG - chr3_3:73968452-73968471 None:intergenic 35.0%
! AAACCATTCTAGGAAATGGA+GGG + chr3_3:73968489-73968508 Msa0471590:intron 35.0%
! GTGCTTTTGGTCAAAGTATA+GGG - chr3_3:73968638-73968657 None:intergenic 35.0%
! CCATGTTTTATAGGTGCTTT+TGG - chr3_3:73968651-73968670 None:intergenic 35.0%
!! CCAAAAGCACCTATAAAACA+TGG + chr3_3:73968648-73968667 Msa0471590:intron 35.0%
! AAGAAATTACAAGTTGACCG+TGG + chr3_3:73968777-73968796 Msa0471590:CDS 35.0%
!!! GCAATAAGATTTGTTTTGGC+GGG + chr3_3:73968801-73968820 Msa0471590:CDS 35.0%
! ATGTCAACCAGAGAGTATAA+TGG - chr3_3:73969185-73969204 None:intergenic 35.0%
AGCTCCCTCAAATAAAACAT+AGG + chr3_3:73969373-73969392 Msa0471590:intron 35.0%
GCTCCCTCAAATAAAACATA+GGG + chr3_3:73969374-73969393 Msa0471590:intron 35.0%
CAATCATCGAAACTGAAACT+AGG - chr3_3:73969439-73969458 None:intergenic 35.0%
AAGAAGTTCAACTACTTTCG+TGG + chr3_3:73969470-73969489 Msa0471590:intron 35.0%
AAAGCAATCAACAAGGGAAT+TGG + chr3_3:73969500-73969519 Msa0471590:CDS 35.0%
AAGCAATCAACAAGGGAATT+GGG + chr3_3:73969501-73969520 Msa0471590:CDS 35.0%
! TGGAACTTGATCCAGATTTT+AGG + chr3_3:73969867-73969886 Msa0471590:CDS 35.0%
! GGAACTTGATCCAGATTTTA+GGG + chr3_3:73969868-73969887 Msa0471590:CDS 35.0%
! ATGTAACTTGTGGAATACAC+TGG + chr3_3:73969994-73970013 Msa0471590:three_prime_UTR 35.0%
! TGTAACTTGTGGAATACACT+GGG + chr3_3:73969995-73970014 Msa0471590:three_prime_UTR 35.0%
TTTGAATAAACTTGTGTGCG+TGG - chr3_3:73970075-73970094 None:intergenic 35.0%
!! ACGTCAAAGTATTGCAGATG+AGG + chr3_3:73967141-73967160 Msa0471590:CDS 40.0%
! GGAAGTATATCATCCAACAC+TGG - chr3_3:73967437-73967456 None:intergenic 40.0%
! GGTTCTGACTACAAGAACAA+CGG - chr3_3:73967578-73967597 None:intergenic 40.0%
TAGTCAGAACCATCTCAATC+TGG + chr3_3:73967587-73967606 Msa0471590:intron 40.0%
TGATCCGTGTTCAACACATA+TGG + chr3_3:73967828-73967847 Msa0471590:intron 40.0%
GTTCATACCAAAGGGCTATA+AGG + chr3_3:73967987-73968006 Msa0471590:intron 40.0%
CTTTCTCTCAAGCATAGTGA+TGG + chr3_3:73968091-73968110 Msa0471590:intron 40.0%
! TCTGCCGTCTTATTATTGAG+TGG + chr3_3:73968158-73968177 Msa0471590:intron 40.0%
TTCTCAGTTCTCAAAGGTTC+AGG - chr3_3:73968307-73968326 None:intergenic 40.0%
TTTAGATAACCTTGAGACGG+AGG + chr3_3:73968454-73968473 Msa0471590:intron 40.0%
TTAGATAACCTTGAGACGGA+GGG + chr3_3:73968455-73968474 Msa0471590:intron 40.0%
! CAAACCATTCTAGGAAATGG+AGG + chr3_3:73968488-73968507 Msa0471590:intron 40.0%
! AACCATTCTAGGAAATGGAG+GGG + chr3_3:73968490-73968509 Msa0471590:intron 40.0%
! ACAAGCCATTGTTATTGCCT+TGG + chr3_3:73968517-73968536 Msa0471590:intron 40.0%
AACCACCAAGGCAATAACAA+TGG - chr3_3:73968525-73968544 None:intergenic 40.0%
! GTGGTTCCATTTTCTCACTT+TGG + chr3_3:73968539-73968558 Msa0471590:intron 40.0%
! CTTTTGGTCAAAGTATAGGG+AGG - chr3_3:73968635-73968654 None:intergenic 40.0%
! GGTGCTTTTGGTCAAAGTAT+AGG - chr3_3:73968639-73968658 None:intergenic 40.0%
TTTCTCATTTCAGGCCATCA+TGG + chr3_3:73968992-73969011 Msa0471590:intron 40.0%
! CCAGAGAGTATAATGGTAAG+AGG - chr3_3:73969178-73969197 None:intergenic 40.0%
CCTCTTACCATTATACTCTC+TGG + chr3_3:73969175-73969194 Msa0471590:intron 40.0%
! AACTTGTTTGTGGAAGGAAG+TGG - chr3_3:73969316-73969335 None:intergenic 40.0%
! GTGGAAAACTTGTTTGTGGA+AGG - chr3_3:73969322-73969341 None:intergenic 40.0%
AGCAATCAACAAGGGAATTG+GGG + chr3_3:73969502-73969521 Msa0471590:CDS 40.0%
TCTCAATGATGGTCTTTGGA+AGG + chr3_3:73969541-73969560 Msa0471590:CDS 40.0%
TATTTGATGTGCTACCATCG+TGG + chr3_3:73969649-73969668 Msa0471590:intron 40.0%
AGAGATAAGAAAAGCCACGA+TGG - chr3_3:73969666-73969685 None:intergenic 40.0%
TGGATCAAGTTCCAGAAAAC+AGG - chr3_3:73969861-73969880 None:intergenic 40.0%
CGCTTATGATCCCTAAAATC+TGG - chr3_3:73969881-73969900 None:intergenic 40.0%
AGTTCTGTACTCCTATTGAG+TGG + chr3_3:73970044-73970063 Msa0471590:three_prime_UTR 40.0%
!! CTTATGGTGCGTTGAGTTGA+AGG - chr3_3:73966711-73966730 None:intergenic 45.0%
!!! TTGTTTTTGCCTAACCACGG+TGG + chr3_3:73967264-73967283 Msa0471590:intron 45.0%
GAACCATCTCAATCTGGTTG+TGG + chr3_3:73967593-73967612 Msa0471590:CDS 45.0%
TCACCACAACCAGATTGAGA+TGG - chr3_3:73967599-73967618 None:intergenic 45.0%
ACATTGATGGAGAAGTCGCA+AGG - chr3_3:73967670-73967689 None:intergenic 45.0%
TGCTCAACCTTATAGCCCTT+TGG - chr3_3:73967997-73968016 None:intergenic 45.0%
GGGGGAAAACAAACCATTCT+AGG + chr3_3:73968479-73968498 Msa0471590:intron 45.0%
! ACCATTCTAGGAAATGGAGG+GGG + chr3_3:73968491-73968510 Msa0471590:intron 45.0%
! AGCCATTGTTATTGCCTTGG+TGG + chr3_3:73968520-73968539 Msa0471590:intron 45.0%
GTGAGAAAATGGAACCACCA+AGG - chr3_3:73968537-73968556 None:intergenic 45.0%
CAGACATTATGCTCTGCAGT+TGG + chr3_3:73968692-73968711 Msa0471590:intron 45.0%
GGTGCAAACATAATGTGTCC+TGG + chr3_3:73968822-73968841 Msa0471590:CDS 45.0%
AAACACAATGGCAGTACCAC+AGG - chr3_3:73968897-73968916 None:intergenic 45.0%
! CTGTTTTCCTTCAGCCATGA+TGG - chr3_3:73969009-73969028 None:intergenic 45.0%
! AGAGGCAGAGTTTCTGAAAG+AGG - chr3_3:73969160-73969179 None:intergenic 45.0%
AGAGGTGGAGCTACATGTTT+AGG + chr3_3:73969279-73969298 Msa0471590:intron 45.0%
GTGGAGCTACATGTTTAGGT+GGG + chr3_3:73969283-73969302 Msa0471590:intron 45.0%
TGGAGCTACATGTTTAGGTG+GGG + chr3_3:73969284-73969303 Msa0471590:intron 45.0%
AGCAATTGCACCATTGCTCG+TGG + chr3_3:73966848-73966867 Msa0471590:intron 50.0%
AATTGCACCATTGCTCGTGG+TGG + chr3_3:73966851-73966870 Msa0471590:intron 50.0%
TCCAGGACTTGAACCAGTGT+TGG + chr3_3:73967421-73967440 Msa0471590:CDS 50.0%
!! TCCAACACTGGTTCAAGTCC+TGG - chr3_3:73967425-73967444 None:intergenic 50.0%
AGTCGCAAGGTAGGCATGTA+CGG - chr3_3:73967657-73967676 None:intergenic 50.0%
TGATGGAGAAGTCGCAAGGT+AGG - chr3_3:73967666-73967685 None:intergenic 50.0%
ATAACCTTGAGACGGAGGGA+GGG + chr3_3:73968459-73968478 Msa0471590:intron 50.0%
TCCCCCTCCATTTCCTAGAA+TGG - chr3_3:73968495-73968514 None:intergenic 50.0%
!! TGTCCTGGTCTTACATCTCC+TGG + chr3_3:73968837-73968856 Msa0471590:CDS 50.0%
!! GTCCTGGTCTTACATCTCCT+GGG + chr3_3:73968838-73968857 Msa0471590:CDS 50.0%
!! TCCTGGTCTTACATCTCCTG+GGG + chr3_3:73968839-73968858 Msa0471590:CDS 50.0%
! GGTGTTCTGGATGAGGAAGT+GGG + chr3_3:73968861-73968880 Msa0471590:CDS 50.0%
! GTGTTCTGGATGAGGAAGTG+GGG + chr3_3:73968862-73968881 Msa0471590:CDS 50.0%
! TGTTCTGGATGAGGAAGTGG+GGG + chr3_3:73968863-73968882 Msa0471590:CDS 50.0%
TTTCAGGCCATCATGGCTGA+AGG + chr3_3:73968999-73969018 Msa0471590:intron 50.0%
AAACAGCATGCCCTTGCCAT+TGG + chr3_3:73969023-73969042 Msa0471590:CDS 50.0%
CCTCTAATTGCACGAGGTTG+TGG - chr3_3:73969264-73969283 None:intergenic 50.0%
CCACAACCTCGTGCAATTAG+AGG + chr3_3:73969261-73969280 Msa0471590:intron 50.0%
CAACCTCGTGCAATTAGAGG+TGG + chr3_3:73969264-73969283 Msa0471590:intron 50.0%
GGTGGAGCTACATGTTTAGG+TGG + chr3_3:73969282-73969301 Msa0471590:intron 50.0%
GGAGCTACATGTTTAGGTGG+GGG + chr3_3:73969285-73969304 Msa0471590:intron 50.0%
ACAGGACTGCATCCCTAAGT+TGG - chr3_3:73969843-73969862 None:intergenic 50.0%
! AGGGATGCAGTCCTGTTTTC+TGG + chr3_3:73969847-73969866 Msa0471590:CDS 50.0%
! TAGGGTACCACCACGAGCAA+TGG - chr3_3:73966861-73966880 None:intergenic 55.0%
AGAATCACGATGAGCCACCG+TGG - chr3_3:73967281-73967300 None:intergenic 55.0%
GATAACCTTGAGACGGAGGG+AGG + chr3_3:73968458-73968477 Msa0471590:intron 55.0%
TAACCTTGAGACGGAGGGAG+GGG + chr3_3:73968460-73968479 Msa0471590:intron 55.0%
!! CCTGGTCTTACATCTCCTGG+GGG + chr3_3:73968840-73968859 Msa0471590:CDS 55.0%
!! TACATCTCCTGGGGGTGTTC+TGG + chr3_3:73968848-73968867 Msa0471590:CDS 55.0%
! GGGTGTTCTGGATGAGGAAG+TGG + chr3_3:73968860-73968879 Msa0471590:CDS 55.0%
GCTCCACCTCTAATTGCACG+AGG - chr3_3:73969270-73969289 None:intergenic 55.0%
AGAGCCGCGATGCCAACTTA+GGG + chr3_3:73969828-73969847 Msa0471590:CDS 55.0%
! GCATCCCTAAGTTGGCATCG+CGG - chr3_3:73969835-73969854 None:intergenic 55.0%
GCGTGGTTCAGCCACTCAAT+AGG - chr3_3:73970058-73970077 None:intergenic 55.0%
CACGATGAGCCACCGTGGTT+AGG - chr3_3:73967276-73967295 None:intergenic 60.0%
AACCTTGAGACGGAGGGAGG+GGG + chr3_3:73968461-73968480 Msa0471590:intron 60.0%
CCCCCAGGAGATGTAAGACC+AGG - chr3_3:73968843-73968862 None:intergenic 60.0%
!! TCCTGGGGGTGTTCTGGATG+AGG + chr3_3:73968854-73968873 Msa0471590:CDS 60.0%
TCCTCATCCAGAACACCCCC+AGG - chr3_3:73968858-73968877 None:intergenic 60.0%
AGTGGGGGCAGAATGTCCTG+TGG + chr3_3:73968878-73968897 Msa0471590:CDS 60.0%
GAGAGCCGCGATGCCAACTT+AGG + chr3_3:73969827-73969846 Msa0471590:CDS 60.0%
TTCCCCCTCCCTCCGTCTCA+AGG - chr3_3:73968466-73968485 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 73966613 73970233 73966613 ID=Msa0471590;Name=Msa0471590
chr3_3 mRNA 73966613 73970233 73966613 ID=Msa0471590-mRNA-1;Parent=Msa0471590;Name=Msa0471590-mRNA-1;_AED=0.11;_eAED=0.11;_QI=118|0.85|0.87|1|0.57|0.75|8|323|223
chr3_3 exon 73966613 73966741 73966613 ID=Msa0471590-mRNA-1:exon:18806;Parent=Msa0471590-mRNA-1
chr3_3 exon 73967081 73967162 73967081 ID=Msa0471590-mRNA-1:exon:18807;Parent=Msa0471590-mRNA-1
chr3_3 exon 73967419 73967486 73967419 ID=Msa0471590-mRNA-1:exon:18808;Parent=Msa0471590-mRNA-1
chr3_3 exon 73967590 73967687 73967590 ID=Msa0471590-mRNA-1:exon:18809;Parent=Msa0471590-mRNA-1
chr3_3 exon 73968763 73968899 73968763 ID=Msa0471590-mRNA-1:exon:18810;Parent=Msa0471590-mRNA-1
chr3_3 exon 73969005 73969072 73969005 ID=Msa0471590-mRNA-1:exon:18811;Parent=Msa0471590-mRNA-1
chr3_3 exon 73969473 73969562 73969473 ID=Msa0471590-mRNA-1:exon:18812;Parent=Msa0471590-mRNA-1
chr3_3 exon 73969793 73970233 73969793 ID=Msa0471590-mRNA-1:exon:18813;Parent=Msa0471590-mRNA-1
chr3_3 five_prime_UTR 73966613 73966730 73966613 ID=Msa0471590-mRNA-1:five_prime_utr;Parent=Msa0471590-mRNA-1
chr3_3 CDS 73966731 73966741 73966731 ID=Msa0471590-mRNA-1:cds;Parent=Msa0471590-mRNA-1
chr3_3 CDS 73967081 73967162 73967081 ID=Msa0471590-mRNA-1:cds;Parent=Msa0471590-mRNA-1
chr3_3 CDS 73967419 73967486 73967419 ID=Msa0471590-mRNA-1:cds;Parent=Msa0471590-mRNA-1
chr3_3 CDS 73967590 73967687 73967590 ID=Msa0471590-mRNA-1:cds;Parent=Msa0471590-mRNA-1
chr3_3 CDS 73968763 73968899 73968763 ID=Msa0471590-mRNA-1:cds;Parent=Msa0471590-mRNA-1
chr3_3 CDS 73969005 73969072 73969005 ID=Msa0471590-mRNA-1:cds;Parent=Msa0471590-mRNA-1
chr3_3 CDS 73969473 73969562 73969473 ID=Msa0471590-mRNA-1:cds;Parent=Msa0471590-mRNA-1
chr3_3 CDS 73969793 73969910 73969793 ID=Msa0471590-mRNA-1:cds;Parent=Msa0471590-mRNA-1
chr3_3 three_prime_UTR 73969911 73970233 73969911 ID=Msa0471590-mRNA-1:three_prime_utr;Parent=Msa0471590-mRNA-1
Gene Sequence

>Msa0471590

ATGTTCAAAAAATTTTCATCTGAAGAGGTGTCTGCACAGAATCAAGTGAAAGCATCTGTTCAAAGAAGAATACGTCAAAGTATTGCAGATGAGTATCCAGGACTTGAACCAGTGTTGGATGATATACTTCCCAAGAAGTCACCTCTTATAGTTGCTAAATGTCAGAACCATCTCAATCTGGTTGTGGTGAACAATGTGCCTTTGTTTTTTAGTGTTCGTGATGGTCCGTACATGCCTACCTTGCGACTTCTCCATCAATATCCAGATATAATGAAGAAATTACAAGTTGACCGTGGTGCAATAAGATTTGTTTTGGCGGGTGCAAACATAATGTGTCCTGGTCTTACATCTCCTGGGGGTGTTCTGGATGAGGAAGTGGGGGCAGAATGTCCTGTGGCCATCATGGCTGAAGGAAAACAGCATGCCCTTGCCATTGGATTTACAAAAATGTCAGCAAAAGACATAAGTTCAACTACTTTCGTGGTTTCAGAAAAGCAATCAACAAGGGAATTGGGGTCGACAACTTGCATTATCTCAATGATGGTCTTTGGAAGATGGAGCGATTTGATTGAAGATGTTGCAACTTGCGAGAGCCGCGATGCCAACTTAGGGATGCAGTCCTGTTTTCTGGAACTTGATCCAGATTTTAGGGATCATAAGCGAACCTGCTAG

Protein sequence

>Msa0471590

MFKKFSSEEVSAQNQVKASVQRRIRQSIADEYPGLEPVLDDILPKKSPLIVAKCQNHLNLVVVNNVPLFFSVRDGPYMPTLRLLHQYPDIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGVLDEEVGAECPVAIMAEGKQHALAIGFTKMSAKDISSTTFVVSEKQSTRELGSTTCIISMMVFGRWSDLIEDVATCESRDANLGMQSCFLELDPDFRDHKRTC*