Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053060 | XP_003589038.1 | 100.000 | 267 | 0 | 0 | 1 | 267 | 1 | 267 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053060 | sp|Q9SGW3|PSD8A_ARATH | 83.521 | 267 | 44 | 0 | 1 | 267 | 1 | 267 | 4.47e-158 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053060 | B7FL82 | 100.000 | 267 | 0 | 0 | 1 | 267 | 1 | 267 | 0.0 | 548 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005010 | Msa0053060 | 0.875988 | 1.996132e-68 | -8.615850e-47 |
| Msa0053060 | Msa0747730 | 0.886829 | 2.432405e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053060 | MtrunA17_Chr1g0151751 | 100.000 | 267 | 0 | 0 | 1 | 267 | 1 | 267 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053060 | AT1G64520.1 | 83.521 | 267 | 44 | 0 | 1 | 267 | 1 | 267 | 4.55e-159 | 442 |
| Msa0053060 | AT5G42040.1 | 62.921 | 267 | 65 | 2 | 1 | 267 | 1 | 233 | 7.24e-113 | 324 |
Find 87 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGAAACTTCTGTGAATT+TGG | 0.038934 | 1_2:+7477846 | None:intergenic |
| TGGGATCCATATCGTGATTT+TGG | 0.114449 | 1_2:+7477866 | None:intergenic |
| CCGTTCTTGATTTCCCATTC+AGG | 0.264023 | 1_2:+7474058 | None:intergenic |
| CACTTGCAGGTGTTACTAAC+AGG | 0.267676 | 1_2:-7476650 | Msa0053060:intron |
| GGAGTTGGAGCAATCCTTTA+TGG | 0.271340 | 1_2:-7474810 | Msa0053060:CDS |
| TGTGTATTTCATGGATCTTT+TGG | 0.284808 | 1_2:-7474732 | Msa0053060:CDS |
| TTCCAAGAGTTCCTGGTCTT+TGG | 0.286082 | 1_2:+7474277 | None:intergenic |
| TTAGACAGTATTAGCAATCT+TGG | 0.294273 | 1_2:+7473892 | None:intergenic |
| GTTAGCTCTTGAACTGCATT+AGG | 0.332972 | 1_2:+7476593 | None:intergenic |
| GGAACTCTTGGAATATATTA+AGG | 0.340067 | 1_2:-7474267 | Msa0053060:CDS |
| GAATCTCCTTTCCCAGCTTA+AGG | 0.346258 | 1_2:-7477770 | Msa0053060:intron |
| TGCTGAATTCCATACTGAAT+TGG | 0.350776 | 1_2:-7474882 | Msa0053060:CDS |
| TGAGAAACTTCTGTGAATTT+GGG | 0.351752 | 1_2:+7477847 | None:intergenic |
| CCCTAGCATAACTAAGTGTT+TGG | 0.361635 | 1_2:+7473966 | None:intergenic |
| GACTACTATATCGTCAGAAT+TGG | 0.363930 | 1_2:-7473730 | Msa0053060:three_prime_UTR |
| TAATATATTCCAAGAGTTCC+TGG | 0.370117 | 1_2:+7474270 | None:intergenic |
| TGGGTACTCCTGAGGAGATT+GGG | 0.370608 | 1_2:+7474949 | None:intergenic |
| GTGTTTGGTTGATGAGTTGC+AGG | 0.382114 | 1_2:+7473981 | None:intergenic |
| TGAATTTCAAATCCATTGTA+AGG | 0.394403 | 1_2:-7473699 | Msa0053060:three_prime_UTR |
| TGAGACTTCTTGTGCAGAAT+AGG | 0.396052 | 1_2:-7474907 | Msa0053060:CDS |
| CGTTCTTGATTTCCCATTCA+GGG | 0.400779 | 1_2:+7474059 | None:intergenic |
| TGAAACATATGTGTATTTCA+TGG | 0.407221 | 1_2:-7474741 | Msa0053060:CDS |
| AAAGCAATTCCAATTCAGTA+TGG | 0.408550 | 1_2:+7474873 | None:intergenic |
| CAATTCCCAAAATCACGATA+TGG | 0.413083 | 1_2:-7477872 | Msa0053060:exon |
| TTGGGTACTCCTGAGGAGAT+TGG | 0.426130 | 1_2:+7474948 | None:intergenic |
| CACCAAAGACCAGGAACTCT+TGG | 0.427127 | 1_2:-7474279 | Msa0053060:CDS |
| TACCGTGCATCAGTGTAGTA+AGG | 0.430307 | 1_2:+7475228 | None:intergenic |
| ATTGCTTTCATCCACTGCTC+TGG | 0.436359 | 1_2:-7474858 | Msa0053060:CDS |
| AGAATGGTGGTGCGCAAGGC+TGG | 0.449267 | 1_2:-7473608 | Msa0053060:three_prime_UTR |
| GTTGTATGCCCCTTCCATAA+AGG | 0.451259 | 1_2:+7474796 | None:intergenic |
| CCTCAGGAGTACCCAATACT+TGG | 0.457349 | 1_2:-7474941 | Msa0053060:CDS |
| GAGGATTGTCTGAAAAGAAA+TGG | 0.459740 | 1_2:-7473936 | Msa0053060:exon |
| CACTGTAAAGAAGAAAGAAA+AGG | 0.461623 | 1_2:+7473778 | None:intergenic |
| ACAGGTTGAGACCAAGTATT+GGG | 0.478577 | 1_2:+7474930 | None:intergenic |
| GGTTAGAGTGTACCTTAAGC+TGG | 0.480510 | 1_2:+7477758 | None:intergenic |
| TCTGCACAAGAAGTCTCAAC+AGG | 0.487747 | 1_2:+7474912 | None:intergenic |
| ACTTAGTTATGCTAGGGAGT+TGG | 0.495838 | 1_2:-7473960 | Msa0053060:CDS |
| TATTAAGCATGCCGTGGAGT+TGG | 0.497949 | 1_2:-7474825 | Msa0053060:CDS |
| TCACTTCAGAAAATTTAGAA+TGG | 0.498720 | 1_2:-7473624 | Msa0053060:three_prime_UTR |
| GATTTCAGGAGCACCCTGAA+TGG | 0.499374 | 1_2:-7474072 | Msa0053060:intron |
| AATAAAGCTACTTGTTGAGA+AGG | 0.499709 | 1_2:-7477981 | Msa0053060:five_prime_UTR |
| ATTTCAGGAGCACCCTGAAT+GGG | 0.504260 | 1_2:-7474071 | Msa0053060:intron |
| GTAAGGTTCATATTCAAATG+AGG | 0.511909 | 1_2:-7473682 | Msa0053060:three_prime_UTR |
| TCGTCTTCCCCAATCTCCTC+AGG | 0.513848 | 1_2:-7474957 | Msa0053060:CDS |
| AGGGAGGGTATTTCTTTGCA+AGG | 0.516901 | 1_2:+7474001 | None:intergenic |
| ACTGTAAAGAAGAAAGAAAA+GGG | 0.520554 | 1_2:+7473779 | None:intergenic |
| TTGAAAGAAATCTCTTTCAA+AGG | 0.524033 | 1_2:+7475257 | None:intergenic |
| TGGTTGATGAGTTGCAGGGA+GGG | 0.525378 | 1_2:+7473986 | None:intergenic |
| GGAGCAATCCTTTATGGAAG+GGG | 0.535947 | 1_2:-7474804 | Msa0053060:CDS |
| TTTGAATATGAACCTTACAA+TGG | 0.545098 | 1_2:+7473687 | None:intergenic |
| TTGGAGCAATCCTTTATGGA+AGG | 0.551519 | 1_2:-7474806 | Msa0053060:CDS |
| TAAGGTTCATATTCAAATGA+GGG | 0.553881 | 1_2:-7473681 | Msa0053060:three_prime_UTR |
| ATTAGGTGTATCTGCAAACA+AGG | 0.554484 | 1_2:+7476610 | None:intergenic |
| CTTCAGAAAATTTAGAATGG+TGG | 0.557319 | 1_2:-7473621 | Msa0053060:three_prime_UTR |
| AACAGGTTGAGACCAAGTAT+TGG | 0.562540 | 1_2:+7474929 | None:intergenic |
| ATTTAGAATGGTGGTGCGCA+AGG | 0.564590 | 1_2:-7473612 | Msa0053060:three_prime_UTR |
| TGAAGTGATCAAAGAATACA+AGG | 0.573208 | 1_2:+7473639 | None:intergenic |
| GTTAGAGTGTACCTTAAGCT+GGG | 0.574520 | 1_2:+7477759 | None:intergenic |
| TGGAGCAATCCTTTATGGAA+GGG | 0.575444 | 1_2:-7474805 | Msa0053060:CDS |
| ACGTTCAGAGATGAGATAGC+AGG | 0.577525 | 1_2:-7474362 | Msa0053060:intron |
| CTGAAAAGAAATGGATGCAA+TGG | 0.579849 | 1_2:-7473927 | Msa0053060:exon |
| GATAGCAGGATGCAGTGAGA+AGG | 0.587670 | 1_2:-7474348 | Msa0053060:CDS |
| CCAAACACTTAGTTATGCTA+GGG | 0.588753 | 1_2:-7473966 | Msa0053060:CDS |
| TATCTGCAAACAAGGGTGGA+AGG | 0.590332 | 1_2:+7476618 | None:intergenic |
| GGGTACTCCTGAGGAGATTG+GGG | 0.592535 | 1_2:+7474950 | None:intergenic |
| ACCAAACACTTAGTTATGCT+AGG | 0.593116 | 1_2:-7473967 | Msa0053060:CDS |
| TCCACGGCATGCTTAATACA+AGG | 0.594862 | 1_2:+7474830 | None:intergenic |
| TTGGTTGATGAGTTGCAGGG+AGG | 0.604694 | 1_2:+7473985 | None:intergenic |
| AGTGTACCTTAAGCTGGGAA+AGG | 0.604789 | 1_2:+7477764 | None:intergenic |
| TGTTTGGTTGATGAGTTGCA+GGG | 0.615391 | 1_2:+7473982 | None:intergenic |
| GGTGTATCTGCAAACAAGGG+TGG | 0.618117 | 1_2:+7476614 | None:intergenic |
| ACAAGGATTCTCCAGAGCAG+TGG | 0.619513 | 1_2:+7474847 | None:intergenic |
| AAAGGATTGCTCCAACTCCA+CGG | 0.630188 | 1_2:+7474814 | None:intergenic |
| GTTATGCTAGGGAGTTGGAG+AGG | 0.631284 | 1_2:-7473955 | Msa0053060:CDS |
| ACTTGCAGGTGTTACTAACA+GGG | 0.633305 | 1_2:-7476649 | Msa0053060:intron |
| AACCTTACTACACTGATGCA+CGG | 0.640807 | 1_2:-7475230 | Msa0053060:intron |
| TCTGTCGAGCACTCAAGACA+CGG | 0.643446 | 1_2:+7474774 | None:intergenic |
| TCCTTGTATTAAGCATGCCG+TGG | 0.644930 | 1_2:-7474831 | Msa0053060:CDS |
| TGTTTAGTTCTGATTCAGTG+TGG | 0.645308 | 1_2:-7473863 | Msa0053060:three_prime_UTR |
| CCAAGTATTGGGTACTCCTG+AGG | 0.648239 | 1_2:+7474941 | None:intergenic |
| GTTGCTGTTCACCAAAGACC+AGG | 0.651601 | 1_2:-7474288 | Msa0053060:CDS |
| AAATACACATATGTTTCATG+TGG | 0.652663 | 1_2:+7474746 | None:intergenic |
| ACTCTTGGAATATATTAAGG+AGG | 0.657443 | 1_2:-7474264 | Msa0053060:intron |
| CCTGAATGGGAAATCAAGAA+CGG | 0.657945 | 1_2:-7474058 | Msa0053060:CDS |
| AGAAAGAAAAGGGTACACAA+AGG | 0.698861 | 1_2:+7473789 | None:intergenic |
| CTGGGAAAGGAGATTCGAAG+CGG | 0.722744 | 1_2:+7477777 | None:intergenic |
| TTAGGTGTATCTGCAAACAA+GGG | 0.724231 | 1_2:+7476611 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTAAAAAAAAAAATA+CGG | + | chr1_2:7475187-7475206 | None:intergenic | 0.0% |
| !! | ATTTGTATAAAAAAATTAAG+AGG | - | chr1_2:7474000-7474019 | Msa0053060:CDS | 10.0% |
| !! | TTTGTATAAAAAAATTAAGA+GGG | - | chr1_2:7474001-7474020 | Msa0053060:CDS | 10.0% |
| !!! | ATAGTTTTTATTTCTAAAAT+TGG | - | chr1_2:7475472-7475491 | Msa0053060:intron | 10.0% |
| !! | TATATGTATATTACTAAAAT+AGG | + | chr1_2:7475697-7475716 | None:intergenic | 10.0% |
| !!! | TTTATTTTGTATAATTGATA+TGG | + | chr1_2:7476146-7476165 | None:intergenic | 10.0% |
| !! | AAGTAAAAAAAATAAATAGA+TGG | + | chr1_2:7476997-7477016 | None:intergenic | 10.0% |
| !! | TTGTATAAAAAAATTAAGAG+GGG | - | chr1_2:7474002-7474021 | Msa0053060:CDS | 15.0% |
| !!! | CTAAAATATGTTTCTTTTAT+AGG | + | chr1_2:7474228-7474247 | None:intergenic | 15.0% |
| !!! | CACTAAAATCTTTTATTTTT+AGG | + | chr1_2:7474465-7474484 | None:intergenic | 15.0% |
| !!! | CTAAAAATAAAAGATTTTAG+TGG | - | chr1_2:7474463-7474482 | Msa0053060:intron | 15.0% |
| !!! | TATTGTAAATGACATTTTAA+TGG | - | chr1_2:7475256-7475275 | Msa0053060:CDS | 15.0% |
| !! | ATTACTAATAACACAAAATA+CGG | + | chr1_2:7475629-7475648 | None:intergenic | 15.0% |
| !!! | TAACATAATTGATTTATGTT+TGG | + | chr1_2:7475786-7475805 | None:intergenic | 15.0% |
| !! | AATTATTTCATAATCAATTC+TGG | - | chr1_2:7475842-7475861 | Msa0053060:intron | 15.0% |
| !! | AGTGAATCTTAAATTAAATT+AGG | - | chr1_2:7475906-7475925 | Msa0053060:intron | 15.0% |
| !! | AATCTTAAATTAAATTAGGT+TGG | - | chr1_2:7475910-7475929 | Msa0053060:intron | 15.0% |
| !!! | AAGAGTTTTTATACTAAAAT+TGG | - | chr1_2:7476071-7476090 | Msa0053060:intron | 15.0% |
| !!! | AAAAGAAACATATTTTAGAG+AGG | - | chr1_2:7474230-7474249 | Msa0053060:intron | 20.0% |
| !! | TTAATAAACTCAGTTATTGT+AGG | - | chr1_2:7474808-7474827 | Msa0053060:CDS | 20.0% |
| !! | TAATAAACTCAGTTATTGTA+GGG | - | chr1_2:7474809-7474828 | Msa0053060:CDS | 20.0% |
| !! | TTATGGAAAACTAAATGATA+AGG | + | chr1_2:7474837-7474856 | None:intergenic | 20.0% |
| !! | AAATTCTCGACAAATAATTA+TGG | + | chr1_2:7474854-7474873 | None:intergenic | 20.0% |
| !! | GAAAGAAAAAGTAAAAATAC+AGG | + | chr1_2:7475138-7475157 | None:intergenic | 20.0% |
| !! | ATATGAGTGAATCTTAAATT+AGG | - | chr1_2:7475230-7475249 | Msa0053060:intron | 20.0% |
| !! | TGTGTTAATTTATGATGTTT+GGG | + | chr1_2:7475742-7475761 | None:intergenic | 20.0% |
| !! | TTGTGTTAATTTATGATGTT+TGG | + | chr1_2:7475743-7475762 | None:intergenic | 20.0% |
| !!! | GATAGATAAATTTTTCTATC+TGG | - | chr1_2:7475975-7475994 | Msa0053060:intron | 20.0% |
| !! | TGTATAATTGATATGGAAAA+TGG | + | chr1_2:7476139-7476158 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTACTTCTGAAGT+TGG | - | chr1_2:7477004-7477023 | Msa0053060:intron | 20.0% |
| !! | AGATATACTAATTATAGAAC+CGG | + | chr1_2:7477524-7477543 | None:intergenic | 20.0% |
| ! | AACACACAACATTGAAATTA+GGG | + | chr1_2:7473912-7473931 | None:intergenic | 25.0% |
| ! | ATAACCTAATGACCTAAATA+AGG | - | chr1_2:7474114-7474133 | Msa0053060:intron | 25.0% |
| ! | GATATTCTTGTGAAGTAAAA+TGG | - | chr1_2:7474273-7474292 | Msa0053060:CDS | 25.0% |
| !! | TGAATATAATTGCGCATTTT+GGG | - | chr1_2:7474322-7474341 | Msa0053060:CDS | 25.0% |
| !!! | AAATAAAAGATTTTAGTGGC+AGG | - | chr1_2:7474467-7474486 | Msa0053060:intron | 25.0% |
| !! | TCTTGATACTTGTTAGTTAT+TGG | - | chr1_2:7474570-7474589 | Msa0053060:intron | 25.0% |
| !! | CTTGATACTTGTTAGTTATT+GGG | - | chr1_2:7474571-7474590 | Msa0053060:intron | 25.0% |
| ! | TTAAAATAGTACCTAATTGC+TGG | - | chr1_2:7474895-7474914 | Msa0053060:CDS | 25.0% |
| !! | TTCATTCCATTCAGTTTTTA+TGG | - | chr1_2:7475066-7475085 | Msa0053060:intron | 25.0% |
| ! | AAAACACCATAAAAACTGAA+TGG | + | chr1_2:7475075-7475094 | None:intergenic | 25.0% |
| ! | TCATATGATATTTGATAAGG+TGG | + | chr1_2:7475216-7475235 | None:intergenic | 25.0% |
| ! | CACTCATATGATATTTGATA+AGG | + | chr1_2:7475219-7475238 | None:intergenic | 25.0% |
| !!! | AAATTAAATTAGGTTGGAAG+AGG | - | chr1_2:7475916-7475935 | Msa0053060:intron | 25.0% |
| !!! | TGACAAATACTGTATTTTAG+AGG | - | chr1_2:7476036-7476055 | Msa0053060:intron | 25.0% |
| ! | AATTAATATGATCGAGTCAT+GGG | + | chr1_2:7476185-7476204 | None:intergenic | 25.0% |
| ! | TAATTAATATGATCGAGTCA+TGG | + | chr1_2:7476186-7476205 | None:intergenic | 25.0% |
| !! | TCTTCTTGTTGAAAATTTTC+AGG | - | chr1_2:7476286-7476305 | Msa0053060:intron | 25.0% |
| !! | CTTCTTGTTGAAAATTTTCA+GGG | - | chr1_2:7476287-7476306 | Msa0053060:intron | 25.0% |
| !! | TTCTTGTTGAAAATTTTCAG+GGG | - | chr1_2:7476288-7476307 | Msa0053060:intron | 25.0% |
| !! | AATTTTTACACTAAGGACAA+CGG | + | chr1_2:7476329-7476348 | None:intergenic | 25.0% |
| ! | TTGAAAGAAATCTCTTTCAA+AGG | + | chr1_2:7476365-7476384 | None:intergenic | 25.0% |
| !! | ATTGTGTACTTGTTAACAAA+GGG | + | chr1_2:7476429-7476448 | None:intergenic | 25.0% |
| !! | TATTGTGTACTTGTTAACAA+AGG | + | chr1_2:7476430-7476449 | None:intergenic | 25.0% |
| ! | CTACAAGGTAATATACTATA+AGG | + | chr1_2:7476523-7476542 | None:intergenic | 25.0% |
| ! | TGTTGAGCTATTGTAATTTA+TGG | - | chr1_2:7476616-7476635 | Msa0053060:CDS | 25.0% |
| ! | AAATACACATATGTTTCATG+TGG | + | chr1_2:7476876-7476895 | None:intergenic | 25.0% |
| ! | TGAAACATATGTGTATTTCA+TGG | - | chr1_2:7476878-7476897 | Msa0053060:intron | 25.0% |
| ! | ATTGAACTCAACTGTTAAAT+TGG | - | chr1_2:7476967-7476986 | Msa0053060:intron | 25.0% |
| ! | TTATAATAATGGTTGTGCTT+CGG | + | chr1_2:7477152-7477171 | None:intergenic | 25.0% |
| !!! | TTAGTATATCTACTGATTTC+AGG | - | chr1_2:7477533-7477552 | Msa0053060:intron | 25.0% |
| !!! | TCTCTTTATTTTGTTCATCT+AGG | - | chr1_2:7477795-7477814 | Msa0053060:CDS | 25.0% |
| ! | ACTGTAAAGAAGAAAGAAAA+GGG | + | chr1_2:7477843-7477862 | None:intergenic | 25.0% |
| ! | TGAATTTCAAATCCATTGTA+AGG | - | chr1_2:7477920-7477939 | Msa0053060:five_prime_UTR | 25.0% |
| ! | TTTGAATATGAACCTTACAA+TGG | + | chr1_2:7477935-7477954 | None:intergenic | 25.0% |
| ! | TAAGGTTCATATTCAAATGA+GGG | - | chr1_2:7477938-7477957 | Msa0053060:five_prime_UTR | 25.0% |
| ! | TCACTTCAGAAAATTTAGAA+TGG | - | chr1_2:7477995-7478014 | Msa0053060:five_prime_UTR | 25.0% |
| ! | AATAAAGCTACTTGTTGAGA+AGG | - | chr1_2:7473638-7473657 | Msa0053060:three_prime_UTR | 30.0% |
| TGAGAAACTTCTGTGAATTT+GGG | + | chr1_2:7473775-7473794 | None:intergenic | 30.0% | |
| AAAGAAACTAGGGTTTAGTA+GGG | + | chr1_2:7473885-7473904 | None:intergenic | 30.0% | |
| CAACACACAACATTGAAATT+AGG | + | chr1_2:7473913-7473932 | None:intergenic | 30.0% | |
| CTAATGACCTAAATAAGGAA+CGG | - | chr1_2:7474119-7474138 | Msa0053060:intron | 30.0% | |
| !! | CATTTTTCCGTTCCTTATTT+AGG | + | chr1_2:7474129-7474148 | None:intergenic | 30.0% |
| !! | TAAGATGGTTTTTCAGAAAC+TGG | - | chr1_2:7474149-7474168 | Msa0053060:intron | 30.0% |
| !! | AAGATGGTTTTTCAGAAACT+GGG | - | chr1_2:7474150-7474169 | Msa0053060:intron | 30.0% |
| TTGTGAAGTAAAATGGTTGT+GGG | - | chr1_2:7474280-7474299 | Msa0053060:CDS | 30.0% | |
| ! | GTGAATATAATTGCGCATTT+TGG | - | chr1_2:7474321-7474340 | Msa0053060:CDS | 30.0% |
| TTTCTCACAAACACTTATGT+GGG | + | chr1_2:7474368-7474387 | None:intergenic | 30.0% | |
| ACATAAGTGTTTGTGAGAAA+CGG | - | chr1_2:7474368-7474387 | Msa0053060:intron | 30.0% | |
| TTCCTTTCTATTGGGTATTA+GGG | + | chr1_2:7474527-7474546 | None:intergenic | 30.0% | |
| TTTCCTTTCTATTGGGTATT+AGG | + | chr1_2:7474528-7474547 | None:intergenic | 30.0% | |
| GCAATAGTTTCCTTTCTATT+GGG | + | chr1_2:7474535-7474554 | None:intergenic | 30.0% | |
| AGCAATAGTTTCCTTTCTAT+TGG | + | chr1_2:7474536-7474555 | None:intergenic | 30.0% | |
| TTGTTAGTTATTGGGCTTAT+AGG | - | chr1_2:7474579-7474598 | Msa0053060:intron | 30.0% | |
| AAACTTTGTCTAACCGTTTA+AGG | + | chr1_2:7474734-7474753 | None:intergenic | 30.0% | |
| TTTAAAGACAATAGCCAGTT+TGG | + | chr1_2:7474880-7474899 | None:intergenic | 30.0% | |
| ! | TTCTCAATGTGACTTTTTAG+TGG | - | chr1_2:7474939-7474958 | Msa0053060:CDS | 30.0% |
| !!! | GACATTTTAATGGATTATCC+TGG | - | chr1_2:7475266-7475285 | Msa0053060:CDS | 30.0% |
| AGATAGATAACTGTTCTATC+TGG | - | chr1_2:7475500-7475519 | Msa0053060:intron | 30.0% | |
| TATTCTTCATTCCAATCAGT+TGG | - | chr1_2:7475552-7475571 | Msa0053060:intron | 30.0% | |
| ATCTATCTTTCTTACTACCA+TGG | + | chr1_2:7475962-7475981 | None:intergenic | 30.0% | |
| TAAGATAATAACTGCTTGTC+AGG | - | chr1_2:7476213-7476232 | Msa0053060:intron | 30.0% | |
| TGTCCTTAGTGTAAAAATTG+AGG | - | chr1_2:7476330-7476349 | Msa0053060:intron | 30.0% | |
| ! | GATCCTCAATTTTTACACTA+AGG | + | chr1_2:7476336-7476355 | None:intergenic | 30.0% |
| ! | TTGTGTACTTGTTAACAAAG+GGG | + | chr1_2:7476428-7476447 | None:intergenic | 30.0% |
| !!! | CATGTCTATTGTTTTAGATC+CGG | + | chr1_2:7476480-7476499 | None:intergenic | 30.0% |
| GTTTCTTGGTATATACTACA+AGG | + | chr1_2:7476538-7476557 | None:intergenic | 30.0% | |
| GATAATACTTTCACGTTTCT+TGG | + | chr1_2:7476552-7476571 | None:intergenic | 30.0% | |
| CAAGAAAGCAAATAATGAGT+TGG | + | chr1_2:7476598-7476617 | None:intergenic | 30.0% | |
| AAAGCAATTCCAATTCAGTA+TGG | + | chr1_2:7476749-7476768 | None:intergenic | 30.0% | |
| ! | TGTGTATTTCATGGATCTTT+TGG | - | chr1_2:7476887-7476906 | Msa0053060:intron | 30.0% |
| TGACAACAATTATTACCTGA+TGG | + | chr1_2:7476919-7476938 | None:intergenic | 30.0% | |
| ! | TGTTAGAGAAATTAGTTTCG+AGG | + | chr1_2:7477057-7477076 | None:intergenic | 30.0% |
| TAGTTCCTGCAATGAAAATT+TGG | - | chr1_2:7477126-7477145 | Msa0053060:intron | 30.0% | |
| GAGCTTCAAGGTTATAATAA+TGG | + | chr1_2:7477163-7477182 | None:intergenic | 30.0% | |
| GGAAAAACAATATACAACAG+AGG | + | chr1_2:7477191-7477210 | None:intergenic | 30.0% | |
| AACTAGTTAGCAAATTGACA+TGG | + | chr1_2:7477226-7477245 | None:intergenic | 30.0% | |
| TAATATATTCCAAGAGTTCC+TGG | + | chr1_2:7477352-7477371 | None:intergenic | 30.0% | |
| GGAACTCTTGGAATATATTA+AGG | - | chr1_2:7477352-7477371 | Msa0053060:intron | 30.0% | |
| ACTCTTGGAATATATTAAGG+AGG | - | chr1_2:7477355-7477374 | Msa0053060:intron | 30.0% | |
| ! | TGTCTATTTTCAAAAGGCAA+AGG | - | chr1_2:7477587-7477606 | Msa0053060:intron | 30.0% |
| TTAGACAGTATTAGCAATCT+TGG | + | chr1_2:7477730-7477749 | None:intergenic | 30.0% | |
| CACTGTAAAGAAGAAAGAAA+AGG | + | chr1_2:7477844-7477863 | None:intergenic | 30.0% | |
| GTAAGGTTCATATTCAAATG+AGG | - | chr1_2:7477937-7477956 | Msa0053060:five_prime_UTR | 30.0% | |
| TGAAGTGATCAAAGAATACA+AGG | + | chr1_2:7477983-7478002 | None:intergenic | 30.0% | |
| ! | CTTCAGAAAATTTAGAATGG+TGG | - | chr1_2:7477998-7478017 | Msa0053060:five_prime_UTR | 30.0% |
| !! | TATCGTGATTTTGGGAATTG+CGG | + | chr1_2:7473747-7473766 | None:intergenic | 35.0% |
| CAATTCCCAAAATCACGATA+TGG | - | chr1_2:7473747-7473766 | Msa0053060:three_prime_UTR | 35.0% | |
| CTGAGAAACTTCTGTGAATT+TGG | + | chr1_2:7473776-7473795 | None:intergenic | 35.0% | |
| GAAAGAAACTAGGGTTTAGT+AGG | + | chr1_2:7473886-7473905 | None:intergenic | 35.0% | |
| TTAGGGTAGGAAAGAAACTA+GGG | + | chr1_2:7473895-7473914 | None:intergenic | 35.0% | |
| ATTAGGGTAGGAAAGAAACT+AGG | + | chr1_2:7473896-7473915 | None:intergenic | 35.0% | |
| CACAACATTGAAATTAGGGT+AGG | + | chr1_2:7473908-7473927 | None:intergenic | 35.0% | |
| ! | AACGGTGTTTTACTCTTGAT+TGG | - | chr1_2:7474033-7474052 | Msa0053060:CDS | 35.0% |
| ! | CGTTCCTTATTTAGGTCATT+AGG | + | chr1_2:7474121-7474140 | None:intergenic | 35.0% |
| AGGAACGGAAAAATGTAAGA+TGG | - | chr1_2:7474134-7474153 | Msa0053060:intron | 35.0% | |
| AAACTGGGTTTACTCTTGAT+TGG | - | chr1_2:7474165-7474184 | Msa0053060:intron | 35.0% | |
| CTTGTGAAGTAAAATGGTTG+TGG | - | chr1_2:7474279-7474298 | Msa0053060:CDS | 35.0% | |
| GTTTCTCACAAACACTTATG+TGG | + | chr1_2:7474369-7474388 | None:intergenic | 35.0% | |
| CATAAGTGTTTGTGAGAAAC+GGG | - | chr1_2:7474369-7474388 | Msa0053060:intron | 35.0% | |
| ATAAGTGTTTGTGAGAAACG+GGG | - | chr1_2:7474370-7474389 | Msa0053060:intron | 35.0% | |
| AACCCTAATACCCAATAGAA+AGG | - | chr1_2:7474522-7474541 | Msa0053060:intron | 35.0% | |
| CTAGAAGCTAAATCCTAACT+GGG | + | chr1_2:7474648-7474667 | None:intergenic | 35.0% | |
| !! | AGGATTTAGCTTCTAGCTTA+TGG | - | chr1_2:7474652-7474671 | Msa0053060:intron | 35.0% |
| !! | GGATTTAGCTTCTAGCTTAT+GGG | - | chr1_2:7474653-7474672 | Msa0053060:intron | 35.0% |
| TGATTCTTTGCCTATGAGAA+AGG | - | chr1_2:7474708-7474727 | Msa0053060:intron | 35.0% | |
| AGAAAGAATCACCAGCAATT+AGG | + | chr1_2:7474909-7474928 | None:intergenic | 35.0% | |
| TTAGGTGTATCTGCAAACAA+GGG | + | chr1_2:7475011-7475030 | None:intergenic | 35.0% | |
| ATTAGGTGTATCTGCAAACA+AGG | + | chr1_2:7475012-7475031 | None:intergenic | 35.0% | |
| !! | CATGCTTTGAAGAACAAAAC+AGG | + | chr1_2:7475359-7475378 | None:intergenic | 35.0% |
| !! | CTGTTTTGTTCTTCAAAGCA+TGG | - | chr1_2:7475357-7475376 | Msa0053060:intron | 35.0% |
| ! | TAACCTTTCTGTCTGGTTTA+AGG | - | chr1_2:7475392-7475411 | Msa0053060:intron | 35.0% |
| GGAGAATGAACAAAGAGAAA+GGG | + | chr1_2:7475590-7475609 | None:intergenic | 35.0% | |
| AGGAGAATGAACAAAGAGAA+AGG | + | chr1_2:7475591-7475610 | None:intergenic | 35.0% | |
| !! | TACGGATTAGAAAACAATGC+AGG | + | chr1_2:7475611-7475630 | None:intergenic | 35.0% |
| ! | TGGGTAGTTTGCATCAAAAT+TGG | + | chr1_2:7475723-7475742 | None:intergenic | 35.0% |
| !! | TTGTTTTGTTCCTCAAACCA+TGG | - | chr1_2:7475942-7475961 | Msa0053060:intron | 35.0% |
| TTTCTTACTACCATGGTTTG+AGG | + | chr1_2:7475955-7475974 | None:intergenic | 35.0% | |
| TAATCTCAGACTGTTGAATC+CGG | - | chr1_2:7476458-7476477 | Msa0053060:intron | 35.0% | |
| AAGGCAATAGTTAAGTGATC+AGG | + | chr1_2:7476504-7476523 | None:intergenic | 35.0% | |
| TGCTGAATTCCATACTGAAT+TGG | - | chr1_2:7476737-7476756 | Msa0053060:intron | 35.0% | |
| AACAGTTGAGTTCAATCATC+AGG | + | chr1_2:7476963-7476982 | None:intergenic | 35.0% | |
| !! | TTTACTTCTGAAGTTGGACT+TGG | - | chr1_2:7477010-7477029 | Msa0053060:intron | 35.0% |
| TTGACATGGATGTGCAAATA+TGG | + | chr1_2:7477212-7477231 | None:intergenic | 35.0% | |
| GGCTTATCAAGTAAAAGCAA+AGG | + | chr1_2:7477470-7477489 | None:intergenic | 35.0% | |
| ! | CGGTTCTGTCTATTTTCAAA+AGG | - | chr1_2:7477581-7477600 | Msa0053060:intron | 35.0% |
| ACCAAACACTTAGTTATGCT+AGG | - | chr1_2:7477652-7477671 | Msa0053060:intron | 35.0% | |
| CCAAACACTTAGTTATGCTA+GGG | - | chr1_2:7477653-7477672 | Msa0053060:intron | 35.0% | |
| GAGGATTGTCTGAAAAGAAA+TGG | - | chr1_2:7477683-7477702 | Msa0053060:intron | 35.0% | |
| CTGAAAAGAAATGGATGCAA+TGG | - | chr1_2:7477692-7477711 | Msa0053060:intron | 35.0% | |
| !! | TGTTTAGTTCTGATTCAGTG+TGG | - | chr1_2:7477756-7477775 | Msa0053060:intron | 35.0% |
| ! | AGAAAGAAAAGGGTACACAA+AGG | + | chr1_2:7477833-7477852 | None:intergenic | 35.0% |
| GACTACTATATCGTCAGAAT+TGG | - | chr1_2:7477889-7477908 | Msa0053060:five_prime_UTR | 35.0% | |
| ! | TTGGGAATTGCGGTTTTCAA+AGG | + | chr1_2:7473737-7473756 | None:intergenic | 40.0% |
| ! | GGGATCCATATCGTGATTTT+GGG | + | chr1_2:7473755-7473774 | None:intergenic | 40.0% |
| ! | TGGGATCCATATCGTGATTT+TGG | + | chr1_2:7473756-7473775 | None:intergenic | 40.0% |
| GTTAGAGTGTACCTTAAGCT+GGG | + | chr1_2:7473863-7473882 | None:intergenic | 40.0% | |
| TTAAGAGGGGTCGTTAGAAA+CGG | - | chr1_2:7474015-7474034 | Msa0053060:CDS | 40.0% | |
| !! | CTCTTGATTGGTTGTTTCTG+TGG | - | chr1_2:7474177-7474196 | Msa0053060:intron | 40.0% |
| TAAGTGTTTGTGAGAAACGG+GGG | - | chr1_2:7474371-7474390 | Msa0053060:intron | 40.0% | |
| !! | AGATTTTAGTGGCAGGTTGT+TGG | - | chr1_2:7474474-7474493 | Msa0053060:intron | 40.0% |
| !! | GATTTTAGTGGCAGGTTGTT+GGG | - | chr1_2:7474475-7474494 | Msa0053060:intron | 40.0% |
| TGGTTTATACTGACCCAGTT+AGG | - | chr1_2:7474632-7474651 | Msa0053060:intron | 40.0% | |
| GCTAGAAGCTAAATCCTAAC+TGG | + | chr1_2:7474649-7474668 | None:intergenic | 40.0% | |
| CCTATGAGAAAGGCCTTAAA+CGG | - | chr1_2:7474718-7474737 | Msa0053060:intron | 40.0% | |
| ! | GTCGAGAATTTTGTCCAAAC+TGG | - | chr1_2:7474863-7474882 | Msa0053060:CDS | 40.0% |
| ! | TAGTGGCATTTTTCACTTGC+AGG | - | chr1_2:7474956-7474975 | Msa0053060:CDS | 40.0% |
| !! | ACTTGCAGGTGTTACTAACA+GGG | - | chr1_2:7474970-7474989 | Msa0053060:intron | 40.0% |
| ! | GTTAGCTCTTGAACTGCATT+AGG | + | chr1_2:7475029-7475048 | None:intergenic | 40.0% |
| TACAGGTAAGAAAACAACGC+AGG | + | chr1_2:7475121-7475140 | None:intergenic | 40.0% | |
| TACGGGTAAGAAAACAATGC+AGG | + | chr1_2:7475169-7475188 | None:intergenic | 40.0% | |
| GGATAGATAACCTTTCTGTC+TGG | - | chr1_2:7475385-7475404 | Msa0053060:intron | 40.0% | |
| TTCATTCCAATCAGTTGGTC+TGG | - | chr1_2:7475557-7475576 | Msa0053060:intron | 40.0% | |
| AAAAGACCAGACCAACTGAT+TGG | + | chr1_2:7475566-7475585 | None:intergenic | 40.0% | |
| !! | GAAGTGTGTGTTTAGTTCTG+CGG | + | chr1_2:7475871-7475890 | None:intergenic | 40.0% |
| TTTGTCATGCAGCAAGACAA+AGG | + | chr1_2:7476023-7476042 | None:intergenic | 40.0% | |
| TAACTGCTTGTCAGGTGAAT+AGG | - | chr1_2:7476221-7476240 | Msa0053060:intron | 40.0% | |
| AACCTTACTACACTGATGCA+CGG | - | chr1_2:7476389-7476408 | Msa0053060:intron | 40.0% | |
| ! | ACAGGTTGAGACCAAGTATT+GGG | + | chr1_2:7476692-7476711 | None:intergenic | 40.0% |
| ! | AACAGGTTGAGACCAAGTAT+TGG | + | chr1_2:7476693-7476712 | None:intergenic | 40.0% |
| TGAGACTTCTTGTGCAGAAT+AGG | - | chr1_2:7476712-7476731 | Msa0053060:intron | 40.0% | |
| TTGGAGCAATCCTTTATGGA+AGG | - | chr1_2:7476813-7476832 | Msa0053060:intron | 40.0% | |
| TGGAGCAATCCTTTATGGAA+GGG | - | chr1_2:7476814-7476833 | Msa0053060:intron | 40.0% | |
| ! | ATCTTTTGGCAAAGACCATC+AGG | - | chr1_2:7476901-7476920 | Msa0053060:intron | 40.0% |
| AGTTCAATCATCAGGTAGGT+AGG | + | chr1_2:7476955-7476974 | None:intergenic | 40.0% | |
| GTTGAGTTCAATCATCAGGT+AGG | + | chr1_2:7476959-7476978 | None:intergenic | 40.0% | |
| ! | TTCGGCCAAATTTTCATTGC+AGG | + | chr1_2:7477134-7477153 | None:intergenic | 40.0% |
| AATGTCGTGCAAAGAGATTC+AGG | + | chr1_2:7477491-7477510 | None:intergenic | 40.0% | |
| !! | CACGACATTGTTTTGTTCTC+CGG | - | chr1_2:7477502-7477521 | Msa0053060:intron | 40.0% |
| CGTTCTTGATTTCCCATTCA+GGG | + | chr1_2:7477563-7477582 | None:intergenic | 40.0% | |
| CCTGAATGGGAAATCAAGAA+CGG | - | chr1_2:7477561-7477580 | Msa0053060:intron | 40.0% | |
| !! | TGTTTGGTTGATGAGTTGCA+GGG | + | chr1_2:7477640-7477659 | None:intergenic | 40.0% |
| CCCTAGCATAACTAAGTGTT+TGG | + | chr1_2:7477656-7477675 | None:intergenic | 40.0% | |
| ACTTAGTTATGCTAGGGAGT+TGG | - | chr1_2:7477659-7477678 | Msa0053060:intron | 40.0% | |
| GAATCTCCTTTCCCAGCTTA+AGG | - | chr1_2:7473849-7473868 | Msa0053060:three_prime_UTR | 45.0% | |
| AGTGTACCTTAAGCTGGGAA+AGG | + | chr1_2:7473858-7473877 | None:intergenic | 45.0% | |
| GGTTAGAGTGTACCTTAAGC+TGG | + | chr1_2:7473864-7473883 | None:intergenic | 45.0% | |
| AACGGGGGTTTACTCTTGAT+TGG | - | chr1_2:7474386-7474405 | Msa0053060:intron | 45.0% | |
| AGGTTGTTGGGTGGCAATTT+GGG | - | chr1_2:7474487-7474506 | Msa0053060:intron | 45.0% | |
| GCAGCTTGAATTCATAGCTC+TGG | - | chr1_2:7474612-7474631 | Msa0053060:intron | 45.0% | |
| ! | CCGTTTAAGGCCTTTCTCAT+AGG | + | chr1_2:7474721-7474740 | None:intergenic | 45.0% |
| !! | CACTTGCAGGTGTTACTAAC+AGG | - | chr1_2:7474969-7474988 | Msa0053060:intron | 45.0% |
| TATCTGCAAACAAGGGTGGA+AGG | + | chr1_2:7475004-7475023 | None:intergenic | 45.0% | |
| ATCACAAAGAGCTCATAGCC+AGG | + | chr1_2:7475287-7475306 | None:intergenic | 45.0% | |
| TCCATACCTCCTGTCATAGT+TGG | - | chr1_2:7475325-7475344 | Msa0053060:intron | 45.0% | |
| TCCAACTATGACAGGAGGTA+TGG | + | chr1_2:7475329-7475348 | None:intergenic | 45.0% | |
| GATCCACTTCCAACTATGAC+AGG | + | chr1_2:7475337-7475356 | None:intergenic | 45.0% | |
| GTTCTTCAAAGCATGGCAGT+AGG | - | chr1_2:7475364-7475383 | Msa0053060:intron | 45.0% | |
| CCACCTTAAACCAGACAGAA+AGG | + | chr1_2:7475398-7475417 | None:intergenic | 45.0% | |
| ! | CCTTTCTGTCTGGTTTAAGG+TGG | - | chr1_2:7475395-7475414 | Msa0053060:intron | 45.0% |
| ACTGTTCTATCTGGTTGTGC+TGG | - | chr1_2:7475509-7475528 | Msa0053060:intron | 45.0% | |
| TACCGTGCATCAGTGTAGTA+AGG | + | chr1_2:7476394-7476413 | None:intergenic | 45.0% | |
| TCTGCACAAGAAGTCTCAAC+AGG | + | chr1_2:7476710-7476729 | None:intergenic | 45.0% | |
| ATTGCTTTCATCCACTGCTC+TGG | - | chr1_2:7476761-7476780 | Msa0053060:intron | 45.0% | |
| TCCTTGTATTAAGCATGCCG+TGG | - | chr1_2:7476788-7476807 | Msa0053060:intron | 45.0% | |
| TCCACGGCATGCTTAATACA+AGG | + | chr1_2:7476792-7476811 | None:intergenic | 45.0% | |
| TATTAAGCATGCCGTGGAGT+TGG | - | chr1_2:7476794-7476813 | Msa0053060:intron | 45.0% | |
| AAAGGATTGCTCCAACTCCA+CGG | + | chr1_2:7476808-7476827 | None:intergenic | 45.0% | |
| GGAGTTGGAGCAATCCTTTA+TGG | - | chr1_2:7476809-7476828 | Msa0053060:intron | 45.0% | |
| GGAGCAATCCTTTATGGAAG+GGG | - | chr1_2:7476815-7476834 | Msa0053060:intron | 45.0% | |
| GTTGTATGCCCCTTCCATAA+AGG | + | chr1_2:7476826-7476845 | None:intergenic | 45.0% | |
| ACGTTCAGAGATGAGATAGC+AGG | - | chr1_2:7477257-7477276 | Msa0053060:intron | 45.0% | |
| ! | TTCCAAGAGTTCCTGGTCTT+TGG | + | chr1_2:7477345-7477364 | None:intergenic | 45.0% |
| !! | ATTTCAGGAGCACCCTGAAT+GGG | - | chr1_2:7477548-7477567 | Msa0053060:intron | 45.0% |
| CCGTTCTTGATTTCCCATTC+AGG | + | chr1_2:7477564-7477583 | None:intergenic | 45.0% | |
| !! | AGGGAGGGTATTTCTTTGCA+AGG | + | chr1_2:7477621-7477640 | None:intergenic | 45.0% |
| !! | GTGTTTGGTTGATGAGTTGC+AGG | + | chr1_2:7477641-7477660 | None:intergenic | 45.0% |
| ! | ATTTAGAATGGTGGTGCGCA+AGG | - | chr1_2:7478007-7478026 | Msa0053060:five_prime_UTR | 45.0% |
| !! | TTTATTAAAAAAAAAAATAC+GGG | + | chr1_2:7475186-7475205 | None:intergenic | 5.0% |
| CTGGGAAAGGAGATTCGAAG+CGG | + | chr1_2:7473845-7473864 | None:intergenic | 50.0% | |
| TTTAGTGGCAGGTTGTTGGG+TGG | - | chr1_2:7474478-7474497 | Msa0053060:intron | 50.0% | |
| CAGGTTGTTGGGTGGCAATT+TGG | - | chr1_2:7474486-7474505 | Msa0053060:intron | 50.0% | |
| GGTGTATCTGCAAACAAGGG+TGG | + | chr1_2:7475008-7475027 | None:intergenic | 50.0% | |
| CCACTTCCAACTATGACAGG+AGG | + | chr1_2:7475334-7475353 | None:intergenic | 50.0% | |
| CCTCCTGTCATAGTTGGAAG+TGG | - | chr1_2:7475331-7475350 | Msa0053060:intron | 50.0% | |
| TGGGTACTCCTGAGGAGATT+GGG | + | chr1_2:7476673-7476692 | None:intergenic | 50.0% | |
| TTGGGTACTCCTGAGGAGAT+TGG | + | chr1_2:7476674-7476693 | None:intergenic | 50.0% | |
| !! | CCAAGTATTGGGTACTCCTG+AGG | + | chr1_2:7476681-7476700 | None:intergenic | 50.0% |
| !! | CCTCAGGAGTACCCAATACT+TGG | - | chr1_2:7476678-7476697 | Msa0053060:intron | 50.0% |
| ACAAGGATTCTCCAGAGCAG+TGG | + | chr1_2:7476775-7476794 | None:intergenic | 50.0% | |
| TCTGTCGAGCACTCAAGACA+CGG | + | chr1_2:7476848-7476867 | None:intergenic | 50.0% | |
| GATAGCAGGATGCAGTGAGA+AGG | - | chr1_2:7477271-7477290 | Msa0053060:intron | 50.0% | |
| ! | GTTGCTGTTCACCAAAGACC+AGG | - | chr1_2:7477331-7477350 | Msa0053060:intron | 50.0% |
| CACCAAAGACCAGGAACTCT+TGG | - | chr1_2:7477340-7477359 | Msa0053060:intron | 50.0% | |
| !! | GATTTCAGGAGCACCCTGAA+TGG | - | chr1_2:7477547-7477566 | Msa0053060:intron | 50.0% |
| !! | TGGTTGATGAGTTGCAGGGA+GGG | + | chr1_2:7477636-7477655 | None:intergenic | 50.0% |
| !! | TTGGTTGATGAGTTGCAGGG+AGG | + | chr1_2:7477637-7477656 | None:intergenic | 50.0% |
| GTTATGCTAGGGAGTTGGAG+AGG | - | chr1_2:7477664-7477683 | Msa0053060:intron | 50.0% | |
| TCGTCTTCCCCAATCTCCTC+AGG | - | chr1_2:7476662-7476681 | Msa0053060:intron | 55.0% | |
| GGGTACTCCTGAGGAGATTG+GGG | + | chr1_2:7476672-7476691 | None:intergenic | 55.0% | |
| ! | ACAGAGGTGTGCGAGCTTCA+AGG | + | chr1_2:7477175-7477194 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 7473608 | 7478033 | 7473608 | ID=Msa0053060;Name=Msa0053060 |
| chr1_2 | mRNA | 7473608 | 7478033 | 7473608 | ID=Msa0053060-mRNA-1;Parent=Msa0053060;Name=Msa0053060-mRNA-1;_AED=0.04;_eAED=0.04;_QI=158|1|1|1|1|1|6|338|267 |
| chr1_2 | exon | 7473608 | 7474086 | 7473608 | ID=Msa0053060-mRNA-1:exon:2530;Parent=Msa0053060-mRNA-1 |
| chr1_2 | exon | 7474265 | 7474376 | 7474265 | ID=Msa0053060-mRNA-1:exon:2529;Parent=Msa0053060-mRNA-1 |
| chr1_2 | exon | 7474719 | 7474982 | 7474719 | ID=Msa0053060-mRNA-1:exon:2528;Parent=Msa0053060-mRNA-1 |
| chr1_2 | exon | 7475231 | 7475333 | 7475231 | ID=Msa0053060-mRNA-1:exon:2527;Parent=Msa0053060-mRNA-1 |
| chr1_2 | exon | 7476585 | 7476663 | 7476585 | ID=Msa0053060-mRNA-1:exon:2526;Parent=Msa0053060-mRNA-1 |
| chr1_2 | exon | 7477771 | 7478033 | 7477771 | ID=Msa0053060-mRNA-1:exon:2525;Parent=Msa0053060-mRNA-1 |
| chr1_2 | five_prime_UTR | 7477876 | 7478033 | 7477876 | ID=Msa0053060-mRNA-1:five_prime_utr;Parent=Msa0053060-mRNA-1 |
| chr1_2 | CDS | 7477771 | 7477875 | 7477771 | ID=Msa0053060-mRNA-1:cds;Parent=Msa0053060-mRNA-1 |
| chr1_2 | CDS | 7476585 | 7476663 | 7476585 | ID=Msa0053060-mRNA-1:cds;Parent=Msa0053060-mRNA-1 |
| chr1_2 | CDS | 7475231 | 7475333 | 7475231 | ID=Msa0053060-mRNA-1:cds;Parent=Msa0053060-mRNA-1 |
| chr1_2 | CDS | 7474719 | 7474982 | 7474719 | ID=Msa0053060-mRNA-1:cds;Parent=Msa0053060-mRNA-1 |
| chr1_2 | CDS | 7474265 | 7474376 | 7474265 | ID=Msa0053060-mRNA-1:cds;Parent=Msa0053060-mRNA-1 |
| chr1_2 | CDS | 7473946 | 7474086 | 7473946 | ID=Msa0053060-mRNA-1:cds;Parent=Msa0053060-mRNA-1 |
| chr1_2 | three_prime_UTR | 7473608 | 7473945 | 7473608 | ID=Msa0053060-mRNA-1:three_prime_utr;Parent=Msa0053060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
