Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005010 | sp|Q9SGW3|PSD8A_ARATH | 83.521 | 267 | 44 | 0 | 1 | 267 | 1 | 267 | 4.47e-158 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005010 | Msa0053060 | 0.875988 | 1.996132e-68 | -8.615850e-47 |
| Msa0005010 | Msa0180100 | -0.808294 | 3.323552e-50 | -8.615850e-47 |
| Msa0005010 | Msa0639220 | -0.802495 | 5.459441e-49 | -8.615850e-47 |
| Msa0005010 | Msa0747250 | 0.828850 | 7.148466e-55 | -8.615850e-47 |
| Msa0005010 | Msa0747730 | 0.997314 | 2.247069e-240 | -8.615850e-47 |
| Msa0005010 | Msa0793230 | 0.821166 | 4.665254e-53 | -8.615850e-47 |
| Msa0005010 | Msa1078830 | 0.808233 | 3.425755e-50 | -8.615850e-47 |
| Msa0005010 | Msa1169660 | 0.812753 | 3.618088e-51 | -8.615850e-47 |
| Msa0005010 | Msa1205270 | -0.810484 | 1.126323e-50 | -8.615850e-47 |
| Msa0005010 | Msa1462050 | 0.814178 | 1.758102e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005010 | MtrunA17_Chr1g0151751 | 100.000 | 267 | 0 | 0 | 1 | 267 | 1 | 267 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005010 | AT1G64520.1 | 83.521 | 267 | 44 | 0 | 1 | 267 | 1 | 267 | 4.55e-159 | 442 |
| Msa0005010 | AT5G42040.1 | 62.921 | 267 | 65 | 2 | 1 | 267 | 1 | 233 | 7.24e-113 | 324 |
Find 87 sgRNAs with CRISPR-Local
Find 361 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGAAACTTCTGTGAATT+TGG | 0.038934 | 1_1:+7457427 | None:intergenic |
| TGGGATCCATATCGTGATTT+TGG | 0.114449 | 1_1:+7457447 | None:intergenic |
| CCGTTCTTGATTTCCCATTC+AGG | 0.264023 | 1_1:+7452686 | None:intergenic |
| CACTTGCAGGTGTTACTAAC+AGG | 0.267676 | 1_1:-7456213 | Msa0005010:intron |
| GGAGTTGGAGCAATCCTTTA+TGG | 0.271340 | 1_1:-7453438 | Msa0005010:CDS |
| TGTGTATTTCATGGATCTTT+TGG | 0.284808 | 1_1:-7453360 | Msa0005010:CDS |
| TTCCAAGAGTTCCTGGTCTT+TGG | 0.286082 | 1_1:+7452905 | None:intergenic |
| TTAGACAGTATTAGCAATCT+TGG | 0.294273 | 1_1:+7452520 | None:intergenic |
| AAATCTCCTTTCCCAGCTTA+AGG | 0.331927 | 1_1:-7457351 | Msa0005010:intron |
| GTTAGCTCTTGAACTGCATT+AGG | 0.332972 | 1_1:+7456156 | None:intergenic |
| GGAACTCTTGGAATATATTA+AGG | 0.340067 | 1_1:-7452895 | Msa0005010:CDS |
| TGCTGAATTCCATACTGAAT+TGG | 0.350776 | 1_1:-7453510 | Msa0005010:CDS |
| TGAGAAACTTCTGTGAATTT+GGG | 0.351752 | 1_1:+7457428 | None:intergenic |
| CCCTAGCATAACTAAGTGTT+TGG | 0.361635 | 1_1:+7452594 | None:intergenic |
| GACTACTATATCGTCAGAAT+TGG | 0.363930 | 1_1:-7452358 | Msa0005010:three_prime_UTR |
| TAATATATTCCAAGAGTTCC+TGG | 0.370117 | 1_1:+7452898 | None:intergenic |
| TGGGTACTCCTGAGGAGATT+GGG | 0.370608 | 1_1:+7453577 | None:intergenic |
| GTGTTTGGTTGATGAGTTGC+AGG | 0.382114 | 1_1:+7452609 | None:intergenic |
| TGAATTTCAAATCCATTGTA+AGG | 0.394403 | 1_1:-7452327 | Msa0005010:three_prime_UTR |
| TGAGACTTCTTGTGCAGAAT+AGG | 0.396052 | 1_1:-7453535 | Msa0005010:CDS |
| CGTTCTTGATTTCCCATTCA+GGG | 0.400779 | 1_1:+7452687 | None:intergenic |
| TGAAACATATGTGTATTTCA+TGG | 0.407221 | 1_1:-7453369 | Msa0005010:CDS |
| AAAGCAATTCCAATTCAGTA+TGG | 0.408550 | 1_1:+7453501 | None:intergenic |
| CAATTCCCAAAATCACGATA+TGG | 0.413083 | 1_1:-7457453 | Msa0005010:exon |
| TTGGGTACTCCTGAGGAGAT+TGG | 0.426130 | 1_1:+7453576 | None:intergenic |
| CACCAAAGACCAGGAACTCT+TGG | 0.427127 | 1_1:-7452907 | Msa0005010:CDS |
| TACCGTGCATCAGTGTAGTA+AGG | 0.430307 | 1_1:+7453856 | None:intergenic |
| ATTGCTTTCATCCACTGCTC+TGG | 0.436359 | 1_1:-7453486 | Msa0005010:CDS |
| AGAATGGTGGTGCGCAAGGC+TGG | 0.449267 | 1_1:-7452236 | Msa0005010:three_prime_UTR |
| GTTGTATGCCCCTTCCATAA+AGG | 0.451259 | 1_1:+7453424 | None:intergenic |
| CCTCAGGAGTACCCAATACT+TGG | 0.457349 | 1_1:-7453569 | Msa0005010:CDS |
| GAGGATTGTCTGAAAAGAAA+TGG | 0.459740 | 1_1:-7452564 | Msa0005010:exon |
| CACTGTAAAGAAGAAAGAAA+AGG | 0.461623 | 1_1:+7452406 | None:intergenic |
| ACAGGTTGAGACCAAGTATT+GGG | 0.478577 | 1_1:+7453558 | None:intergenic |
| GGTTAGAGTGTACCTTAAGC+TGG | 0.480510 | 1_1:+7457339 | None:intergenic |
| TCTGCACAAGAAGTCTCAAC+AGG | 0.487747 | 1_1:+7453540 | None:intergenic |
| ACTTAGTTATGCTAGGGAGT+TGG | 0.495838 | 1_1:-7452588 | Msa0005010:CDS |
| TATTAAGCATGCCGTGGAGT+TGG | 0.497949 | 1_1:-7453453 | Msa0005010:CDS |
| TCACTTCAGAAAATTTAGAA+TGG | 0.498720 | 1_1:-7452252 | Msa0005010:three_prime_UTR |
| GATTTCAGGAGCACCCTGAA+TGG | 0.499374 | 1_1:-7452700 | Msa0005010:intron |
| AATAAAGCTACTTGTTGAGA+AGG | 0.499709 | 1_1:-7457562 | Msa0005010:five_prime_UTR |
| ATTTCAGGAGCACCCTGAAT+GGG | 0.504260 | 1_1:-7452699 | Msa0005010:intron |
| GTAAGGTTCATATTCAAATG+AGG | 0.511909 | 1_1:-7452310 | Msa0005010:three_prime_UTR |
| TCGTCTTCCCCAATCTCCTC+AGG | 0.513848 | 1_1:-7453585 | Msa0005010:CDS |
| AGGGAGGGTATTTCTTTGCA+AGG | 0.516901 | 1_1:+7452629 | None:intergenic |
| ACTGTAAAGAAGAAAGAAAA+GGG | 0.520554 | 1_1:+7452407 | None:intergenic |
| TTGAAAGAAATCTCTTTCAA+AGG | 0.524033 | 1_1:+7453885 | None:intergenic |
| TGGTTGATGAGTTGCAGGGA+GGG | 0.525378 | 1_1:+7452614 | None:intergenic |
| GGAGCAATCCTTTATGGAAG+GGG | 0.535947 | 1_1:-7453432 | Msa0005010:CDS |
| TTTGAATATGAACCTTACAA+TGG | 0.545098 | 1_1:+7452315 | None:intergenic |
| TTGGAGCAATCCTTTATGGA+AGG | 0.551519 | 1_1:-7453434 | Msa0005010:CDS |
| TAAGGTTCATATTCAAATGA+GGG | 0.553881 | 1_1:-7452309 | Msa0005010:three_prime_UTR |
| ATTAGGTGTATCTGCAAACA+AGG | 0.554484 | 1_1:+7456173 | None:intergenic |
| CTTCAGAAAATTTAGAATGG+TGG | 0.557319 | 1_1:-7452249 | Msa0005010:three_prime_UTR |
| AACAGGTTGAGACCAAGTAT+TGG | 0.562540 | 1_1:+7453557 | None:intergenic |
| ATTTAGAATGGTGGTGCGCA+AGG | 0.564590 | 1_1:-7452240 | Msa0005010:three_prime_UTR |
| TGAAGTGATCAAAGAATACA+AGG | 0.573208 | 1_1:+7452267 | None:intergenic |
| GTTAGAGTGTACCTTAAGCT+GGG | 0.574520 | 1_1:+7457340 | None:intergenic |
| TGGAGCAATCCTTTATGGAA+GGG | 0.575444 | 1_1:-7453433 | Msa0005010:CDS |
| ACGTTCAGAGATGAGATAGC+AGG | 0.577525 | 1_1:-7452990 | Msa0005010:intron |
| CTGAAAAGAAATGGATGCAA+TGG | 0.579849 | 1_1:-7452555 | Msa0005010:exon |
| GATAGCAGGATGCAGTGAGA+AGG | 0.587670 | 1_1:-7452976 | Msa0005010:CDS |
| CCAAACACTTAGTTATGCTA+GGG | 0.588753 | 1_1:-7452594 | Msa0005010:CDS |
| TATCTGCAAACAAGGGTGGA+AGG | 0.590332 | 1_1:+7456181 | None:intergenic |
| GGGTACTCCTGAGGAGATTG+GGG | 0.592535 | 1_1:+7453578 | None:intergenic |
| ACCAAACACTTAGTTATGCT+AGG | 0.593116 | 1_1:-7452595 | Msa0005010:CDS |
| TCCACGGCATGCTTAATACA+AGG | 0.594862 | 1_1:+7453458 | None:intergenic |
| TTGGTTGATGAGTTGCAGGG+AGG | 0.604694 | 1_1:+7452613 | None:intergenic |
| AGTGTACCTTAAGCTGGGAA+AGG | 0.604789 | 1_1:+7457345 | None:intergenic |
| TGTTTGGTTGATGAGTTGCA+GGG | 0.615391 | 1_1:+7452610 | None:intergenic |
| GGTGTATCTGCAAACAAGGG+TGG | 0.618117 | 1_1:+7456177 | None:intergenic |
| ACAAGGATTCTCCAGAGCAG+TGG | 0.619513 | 1_1:+7453475 | None:intergenic |
| AAAGGATTGCTCCAACTCCA+CGG | 0.630188 | 1_1:+7453442 | None:intergenic |
| GTTATGCTAGGGAGTTGGAG+AGG | 0.631284 | 1_1:-7452583 | Msa0005010:CDS |
| ACTTGCAGGTGTTACTAACA+GGG | 0.633305 | 1_1:-7456212 | Msa0005010:intron |
| AACCTTACTACACTGATGCA+CGG | 0.640807 | 1_1:-7453858 | Msa0005010:intron |
| TCTGTCGAGCACTCAAGACA+CGG | 0.643446 | 1_1:+7453402 | None:intergenic |
| TCCTTGTATTAAGCATGCCG+TGG | 0.644930 | 1_1:-7453459 | Msa0005010:CDS |
| TGTTTAGTTCTGATTCAGTG+TGG | 0.645308 | 1_1:-7452491 | Msa0005010:three_prime_UTR |
| CCAAGTATTGGGTACTCCTG+AGG | 0.648239 | 1_1:+7453569 | None:intergenic |
| GTTGCTGTTCACCAAAGACC+AGG | 0.651601 | 1_1:-7452916 | Msa0005010:CDS |
| AAATACACATATGTTTCATG+TGG | 0.652663 | 1_1:+7453374 | None:intergenic |
| ACTCTTGGAATATATTAAGG+AGG | 0.657443 | 1_1:-7452892 | Msa0005010:intron |
| CCTGAATGGGAAATCAAGAA+CGG | 0.657945 | 1_1:-7452686 | Msa0005010:CDS |
| CTGGGAAAGGAGATTTGAAG+CGG | 0.672348 | 1_1:+7457358 | None:intergenic |
| AGAAAGAAAAGGGTACACAA+AGG | 0.698861 | 1_1:+7452417 | None:intergenic |
| TTAGGTGTATCTGCAAACAA+GGG | 0.724231 | 1_1:+7456174 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTAATTATGTCAATTT+TGG | - | chr1_1:7452573-7452592 | Msa0005010:exon | 10.0% |
| !!! | AAATTAATTATGTCAATTTT+GGG | - | chr1_1:7452574-7452593 | Msa0005010:CDS | 10.0% |
| !! | ATTTGTATAAAAAAATTAAG+AGG | - | chr1_1:7452637-7452656 | Msa0005010:CDS | 10.0% |
| !! | TTTGTATAAAAAAATTAAGA+GGG | - | chr1_1:7452638-7452657 | Msa0005010:CDS | 10.0% |
| !!! | ATAGTTTTTATTTCTAAAAT+TGG | - | chr1_1:7454107-7454126 | Msa0005010:intron | 10.0% |
| !! | TATATGTATATTACTAAAAT+AGG | + | chr1_1:7455268-7455287 | None:intergenic | 10.0% |
| !!! | TTTATTTTGTATAATTGATA+TGG | + | chr1_1:7455717-7455736 | None:intergenic | 10.0% |
| !! | AAGTAAAAAAAATAAATAGA+TGG | + | chr1_1:7456568-7456587 | None:intergenic | 10.0% |
| !! | TTGTATAAAAAAATTAAGAG+GGG | - | chr1_1:7452639-7452658 | Msa0005010:CDS | 15.0% |
| !!! | CTAAAATATGTTTCTTTTAT+AGG | + | chr1_1:7452865-7452884 | None:intergenic | 15.0% |
| !!! | CACTAAAATCTTTTATTTTT+AGG | + | chr1_1:7453102-7453121 | None:intergenic | 15.0% |
| !!! | CTAAAAATAAAAGATTTTAG+TGG | - | chr1_1:7453100-7453119 | Msa0005010:intron | 15.0% |
| !!! | TATTGTAAATGACATTTTAA+TGG | - | chr1_1:7453891-7453910 | Msa0005010:CDS | 15.0% |
| !! | AAAACTAAAGTAAAAAGATA+AGG | + | chr1_1:7454292-7454311 | None:intergenic | 15.0% |
| !!! | TTATCTTTTTACTTTAGTTT+TGG | - | chr1_1:7454291-7454310 | Msa0005010:intron | 15.0% |
| !! | ATTACTAATAACACAAAATA+CGG | + | chr1_1:7455200-7455219 | None:intergenic | 15.0% |
| !!! | TAACATAATTGATTTATGTT+TGG | + | chr1_1:7455357-7455376 | None:intergenic | 15.0% |
| !! | AATTATTTCATAATCAATTC+TGG | - | chr1_1:7455413-7455432 | Msa0005010:intron | 15.0% |
| !! | AGTGAATCTTAAATTAAATT+AGG | - | chr1_1:7455477-7455496 | Msa0005010:intron | 15.0% |
| !! | AATCTTAAATTAAATTAGGT+TGG | - | chr1_1:7455481-7455500 | Msa0005010:intron | 15.0% |
| !!! | AAGAGTTTTTATACTAAAAT+TGG | - | chr1_1:7455642-7455661 | Msa0005010:intron | 15.0% |
| !!! | AAAAGAAACATATTTTAGAG+AGG | - | chr1_1:7452867-7452886 | Msa0005010:intron | 20.0% |
| !! | TTAATAAACTCAGTTATTGT+AGG | - | chr1_1:7453444-7453463 | Msa0005010:CDS | 20.0% |
| !! | TAATAAACTCAGTTATTGTA+GGG | - | chr1_1:7453445-7453464 | Msa0005010:CDS | 20.0% |
| !! | TTATGGAAAACTAAATGATA+AGG | + | chr1_1:7453473-7453492 | None:intergenic | 20.0% |
| !! | AAATTCTCGACAAATAATTA+TGG | + | chr1_1:7453490-7453509 | None:intergenic | 20.0% |
| !! | CAAAGAAAAAGTAAAAATAC+AGG | + | chr1_1:7453774-7453793 | None:intergenic | 20.0% |
| !! | ATATGAGTGAATCTTAAATT+AGG | - | chr1_1:7453865-7453884 | Msa0005010:CDS | 20.0% |
| !! | TGTGTTAATTTATGATGTTT+GGG | + | chr1_1:7455313-7455332 | None:intergenic | 20.0% |
| !! | TTGTGTTAATTTATGATGTT+TGG | + | chr1_1:7455314-7455333 | None:intergenic | 20.0% |
| !!! | GATAGATAAATTTTTCTATC+TGG | - | chr1_1:7455546-7455565 | Msa0005010:intron | 20.0% |
| !! | TGTATAATTGATATGGAAAA+TGG | + | chr1_1:7455710-7455729 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTACTTCTGAAGT+TGG | - | chr1_1:7456575-7456594 | Msa0005010:intron | 20.0% |
| !! | AGATATACTAATTATAGAAC+CGG | + | chr1_1:7457095-7457114 | None:intergenic | 20.0% |
| ! | ATAACCTAATGACCTAAATA+AGG | - | chr1_1:7452751-7452770 | Msa0005010:intron | 25.0% |
| ! | GATATTCTTGTGAAGTAAAA+TGG | - | chr1_1:7452910-7452929 | Msa0005010:CDS | 25.0% |
| !! | TGAATATAATTGCGCATTTT+GGG | - | chr1_1:7452959-7452978 | Msa0005010:CDS | 25.0% |
| !!! | AAATAAAAGATTTTAGTGGC+AGG | - | chr1_1:7453104-7453123 | Msa0005010:intron | 25.0% |
| !! | TCTTGATACTTGTTAGTTAT+TGG | - | chr1_1:7453207-7453226 | Msa0005010:intron | 25.0% |
| !! | CTTGATACTTGTTAGTTATT+GGG | - | chr1_1:7453208-7453227 | Msa0005010:intron | 25.0% |
| ! | TTAAAATAGTACCTAATTGC+TGG | - | chr1_1:7453531-7453550 | Msa0005010:CDS | 25.0% |
| !! | TTTTCAATGTGACTTTTTAG+TGG | - | chr1_1:7453575-7453594 | Msa0005010:CDS | 25.0% |
| ! | TCATATGATATTTGATAAGG+TGG | + | chr1_1:7453851-7453870 | None:intergenic | 25.0% |
| ! | CACTCATATGATATTTGATA+AGG | + | chr1_1:7453854-7453873 | None:intergenic | 25.0% |
| ! | AGTAAAAAGATAAGGACTTA+GGG | + | chr1_1:7454284-7454303 | None:intergenic | 25.0% |
| ! | AAGTAAAAAGATAAGGACTT+AGG | + | chr1_1:7454285-7454304 | None:intergenic | 25.0% |
| !!! | TAGAAAAGTTGGTAGAAAAT+AGG | - | chr1_1:7454893-7454912 | Msa0005010:intron | 25.0% |
| !! | GTTTCTCTAATAGTTTTCTT+AGG | + | chr1_1:7455018-7455037 | None:intergenic | 25.0% |
| ! | AACCATTAGAAAAGATTTAG+AGG | - | chr1_1:7455035-7455054 | Msa0005010:intron | 25.0% |
| !!! | AAATTAAATTAGGTTGGAAG+AGG | - | chr1_1:7455487-7455506 | Msa0005010:intron | 25.0% |
| !!! | TGACAAATACTGTATTTTAG+AGG | - | chr1_1:7455607-7455626 | Msa0005010:intron | 25.0% |
| ! | AATTAATATGATCGAGTCAT+GGG | + | chr1_1:7455756-7455775 | None:intergenic | 25.0% |
| ! | TAATTAATATGATCGAGTCA+TGG | + | chr1_1:7455757-7455776 | None:intergenic | 25.0% |
| !! | TCTTCTTGTTGAAAATTTTC+AGG | - | chr1_1:7455857-7455876 | Msa0005010:intron | 25.0% |
| !! | CTTCTTGTTGAAAATTTTCA+GGG | - | chr1_1:7455858-7455877 | Msa0005010:intron | 25.0% |
| !! | TTCTTGTTGAAAATTTTCAG+GGG | - | chr1_1:7455859-7455878 | Msa0005010:intron | 25.0% |
| !! | AATTTTTACACTAAGGACAA+CGG | + | chr1_1:7455900-7455919 | None:intergenic | 25.0% |
| ! | TTGAAAGAAATCTCTTTCAA+AGG | + | chr1_1:7455936-7455955 | None:intergenic | 25.0% |
| !! | ATTGTGTACTTGTTAACAAA+GGG | + | chr1_1:7456000-7456019 | None:intergenic | 25.0% |
| !! | TATTGTGTACTTGTTAACAA+AGG | + | chr1_1:7456001-7456020 | None:intergenic | 25.0% |
| ! | CTACAAGGTAATATACTATA+AGG | + | chr1_1:7456094-7456113 | None:intergenic | 25.0% |
| ! | TGTTGAGCTATTGTAATTTA+TGG | - | chr1_1:7456187-7456206 | Msa0005010:CDS | 25.0% |
| ! | AAATACACATATGTTTCATG+TGG | + | chr1_1:7456447-7456466 | None:intergenic | 25.0% |
| ! | TGAAACATATGTGTATTTCA+TGG | - | chr1_1:7456449-7456468 | Msa0005010:intron | 25.0% |
| ! | ATTGAACTCAACTGTTAAAT+TGG | - | chr1_1:7456538-7456557 | Msa0005010:intron | 25.0% |
| ! | TTATAATAATGGTTGTGCTT+CGG | + | chr1_1:7456723-7456742 | None:intergenic | 25.0% |
| !!! | TTAGTATATCTACTGATTTC+AGG | - | chr1_1:7457104-7457123 | Msa0005010:intron | 25.0% |
| !!! | TCTCTTTATTTTGTTCATCT+AGG | - | chr1_1:7457366-7457385 | Msa0005010:CDS | 25.0% |
| ! | ACTGTAAAGAAGAAAGAAAA+GGG | + | chr1_1:7457414-7457433 | None:intergenic | 25.0% |
| ! | TGAATTTCAAATCCATTGTA+AGG | - | chr1_1:7457491-7457510 | Msa0005010:five_prime_UTR | 25.0% |
| ! | TTTGAATATGAACCTTACAA+TGG | + | chr1_1:7457506-7457525 | None:intergenic | 25.0% |
| ! | TAAGGTTCATATTCAAATGA+GGG | - | chr1_1:7457509-7457528 | Msa0005010:five_prime_UTR | 25.0% |
| ! | TCACTTCAGAAAATTTAGAA+TGG | - | chr1_1:7457566-7457585 | Msa0005010:five_prime_UTR | 25.0% |
| ! | AATAAAGCTACTTGTTGAGA+AGG | - | chr1_1:7452256-7452275 | Msa0005010:three_prime_UTR | 30.0% |
| TGAGAAACTTCTGTGAATTT+GGG | + | chr1_1:7452393-7452412 | None:intergenic | 30.0% | |
| AAAGAAACTAGGGTTTAGTA+GGG | + | chr1_1:7452503-7452522 | None:intergenic | 30.0% | |
| ! | AACACACAGCATTGAAATTA+GGG | + | chr1_1:7452530-7452549 | None:intergenic | 30.0% |
| CTAATGACCTAAATAAGGAA+CGG | - | chr1_1:7452756-7452775 | Msa0005010:intron | 30.0% | |
| !! | CATTTTTCCGTTCCTTATTT+AGG | + | chr1_1:7452766-7452785 | None:intergenic | 30.0% |
| !! | TAAGATGGTTTTTCAGAAAC+TGG | - | chr1_1:7452786-7452805 | Msa0005010:intron | 30.0% |
| !! | AAGATGGTTTTTCAGAAACT+GGG | - | chr1_1:7452787-7452806 | Msa0005010:intron | 30.0% |
| TTGTGAAGTAAAATGGTTGT+GGG | - | chr1_1:7452917-7452936 | Msa0005010:CDS | 30.0% | |
| ! | GTGAATATAATTGCGCATTT+TGG | - | chr1_1:7452958-7452977 | Msa0005010:CDS | 30.0% |
| TTTCTCACAAACACTTATGT+GGG | + | chr1_1:7453005-7453024 | None:intergenic | 30.0% | |
| ACATAAGTGTTTGTGAGAAA+CGG | - | chr1_1:7453005-7453024 | Msa0005010:intron | 30.0% | |
| TTCCTTTCTATTGGGTATTA+GGG | + | chr1_1:7453164-7453183 | None:intergenic | 30.0% | |
| TTTCCTTTCTATTGGGTATT+AGG | + | chr1_1:7453165-7453184 | None:intergenic | 30.0% | |
| GCAATAGTTTCCTTTCTATT+GGG | + | chr1_1:7453172-7453191 | None:intergenic | 30.0% | |
| AGCAATAGTTTCCTTTCTAT+TGG | + | chr1_1:7453173-7453192 | None:intergenic | 30.0% | |
| TTGTTAGTTATTGGGCTTAT+AGG | - | chr1_1:7453216-7453235 | Msa0005010:intron | 30.0% | |
| AAACTTTGTCTAACCGTTTA+AGG | + | chr1_1:7453370-7453389 | None:intergenic | 30.0% | |
| TTTAAAGACTATAGCCAGTT+TGG | + | chr1_1:7453516-7453535 | None:intergenic | 30.0% | |
| TTCATTCCATTCAGTTTCTA+TGG | - | chr1_1:7453702-7453721 | Msa0005010:intron | 30.0% | |
| AAAACACCATAGAAACTGAA+TGG | + | chr1_1:7453711-7453730 | None:intergenic | 30.0% | |
| !!! | GACATTTTAATGGATTATCC+TGG | - | chr1_1:7453901-7453920 | Msa0005010:CDS | 30.0% |
| AGATAGATAACTGTTCTATC+TGG | - | chr1_1:7454135-7454154 | Msa0005010:intron | 30.0% | |
| !!! | TTTAGTTTTGGATGTACTGA+CGG | - | chr1_1:7454303-7454322 | Msa0005010:intron | 30.0% |
| TAGAAACAAGACGGAATATA+TGG | - | chr1_1:7454462-7454481 | Msa0005010:intron | 30.0% | |
| TGGAATGTAACTTCAGTAAA+AGG | - | chr1_1:7454482-7454501 | Msa0005010:intron | 30.0% | |
| ATATCTAAACCGTGTAACTT+GGG | + | chr1_1:7454554-7454573 | None:intergenic | 30.0% | |
| TTACACGGTTTAGATATCTT+GGG | - | chr1_1:7454557-7454576 | Msa0005010:intron | 30.0% | |
| ! | TCTACCAACTTTTCTACTAT+AGG | + | chr1_1:7454889-7454908 | None:intergenic | 30.0% |
| ! | GACCTCTAAATCTTTTCTAA+TGG | + | chr1_1:7455040-7455059 | None:intergenic | 30.0% |
| GTTCTATCAAAGACCATATT+TGG | + | chr1_1:7455075-7455094 | None:intergenic | 30.0% | |
| TGGTCTTTGATAGAACATTA+TGG | - | chr1_1:7455079-7455098 | Msa0005010:intron | 30.0% | |
| TCTTTGATAGAACATTATGG+CGG | - | chr1_1:7455082-7455101 | Msa0005010:intron | 30.0% | |
| ATCTATCTTTCTTACTACCA+TGG | + | chr1_1:7455533-7455552 | None:intergenic | 30.0% | |
| TAAGATAATAACTGCTTGTC+AGG | - | chr1_1:7455784-7455803 | Msa0005010:intron | 30.0% | |
| TGTCCTTAGTGTAAAAATTG+AGG | - | chr1_1:7455901-7455920 | Msa0005010:intron | 30.0% | |
| ! | GATCCTCAATTTTTACACTA+AGG | + | chr1_1:7455907-7455926 | None:intergenic | 30.0% |
| ! | TTGTGTACTTGTTAACAAAG+GGG | + | chr1_1:7455999-7456018 | None:intergenic | 30.0% |
| !!! | CATGTCTATTGTTTTAGATC+CGG | + | chr1_1:7456051-7456070 | None:intergenic | 30.0% |
| GTTTCTTGGTATATACTACA+AGG | + | chr1_1:7456109-7456128 | None:intergenic | 30.0% | |
| GATAATACTTTCACGTTTCT+TGG | + | chr1_1:7456123-7456142 | None:intergenic | 30.0% | |
| CAAGAAAGCAAATAATGAGT+TGG | + | chr1_1:7456169-7456188 | None:intergenic | 30.0% | |
| AAAGCAATTCCAATTCAGTA+TGG | + | chr1_1:7456320-7456339 | None:intergenic | 30.0% | |
| ! | TGTGTATTTCATGGATCTTT+TGG | - | chr1_1:7456458-7456477 | Msa0005010:intron | 30.0% |
| TGACAACAATTATTACCTGA+TGG | + | chr1_1:7456490-7456509 | None:intergenic | 30.0% | |
| ! | TGTTAGAGAAATTAGTTTCG+AGG | + | chr1_1:7456628-7456647 | None:intergenic | 30.0% |
| TAGTTCCTGCAATGAAAATT+TGG | - | chr1_1:7456697-7456716 | Msa0005010:intron | 30.0% | |
| GAGCTTCAAGGTTATAATAA+TGG | + | chr1_1:7456734-7456753 | None:intergenic | 30.0% | |
| GGAAAAACAATATACAACAG+AGG | + | chr1_1:7456762-7456781 | None:intergenic | 30.0% | |
| AACTAGTTAGCAAATTGACA+TGG | + | chr1_1:7456797-7456816 | None:intergenic | 30.0% | |
| TAATATATTCCAAGAGTTCC+TGG | + | chr1_1:7456923-7456942 | None:intergenic | 30.0% | |
| GGAACTCTTGGAATATATTA+AGG | - | chr1_1:7456923-7456942 | Msa0005010:intron | 30.0% | |
| ACTCTTGGAATATATTAAGG+AGG | - | chr1_1:7456926-7456945 | Msa0005010:intron | 30.0% | |
| ! | TGTCTATTTTCAAAAGGCAA+AGG | - | chr1_1:7457158-7457177 | Msa0005010:intron | 30.0% |
| TTAGACAGTATTAGCAATCT+TGG | + | chr1_1:7457301-7457320 | None:intergenic | 30.0% | |
| CACTGTAAAGAAGAAAGAAA+AGG | + | chr1_1:7457415-7457434 | None:intergenic | 30.0% | |
| GTAAGGTTCATATTCAAATG+AGG | - | chr1_1:7457508-7457527 | Msa0005010:five_prime_UTR | 30.0% | |
| TGAAGTGATCAAAGAATACA+AGG | + | chr1_1:7457554-7457573 | None:intergenic | 30.0% | |
| ! | CTTCAGAAAATTTAGAATGG+TGG | - | chr1_1:7457569-7457588 | Msa0005010:five_prime_UTR | 30.0% |
| !! | TATCGTGATTTTGGGAATTG+CGG | + | chr1_1:7452365-7452384 | None:intergenic | 35.0% |
| CAATTCCCAAAATCACGATA+TGG | - | chr1_1:7452365-7452384 | Msa0005010:three_prime_UTR | 35.0% | |
| CTGAGAAACTTCTGTGAATT+TGG | + | chr1_1:7452394-7452413 | None:intergenic | 35.0% | |
| GAAAGAAACTAGGGTTTAGT+AGG | + | chr1_1:7452504-7452523 | None:intergenic | 35.0% | |
| TTAGGGTAGGAAAGAAACTA+GGG | + | chr1_1:7452513-7452532 | None:intergenic | 35.0% | |
| ATTAGGGTAGGAAAGAAACT+AGG | + | chr1_1:7452514-7452533 | None:intergenic | 35.0% | |
| ! | CAACACACAGCATTGAAATT+AGG | + | chr1_1:7452531-7452550 | None:intergenic | 35.0% |
| TTAAGAGGGGTTGTTAGAAA+CGG | - | chr1_1:7452652-7452671 | Msa0005010:CDS | 35.0% | |
| ! | AACGGTGTTTTACTCTTGAT+TGG | - | chr1_1:7452670-7452689 | Msa0005010:CDS | 35.0% |
| ! | CGTTCCTTATTTAGGTCATT+AGG | + | chr1_1:7452758-7452777 | None:intergenic | 35.0% |
| AGGAACGGAAAAATGTAAGA+TGG | - | chr1_1:7452771-7452790 | Msa0005010:intron | 35.0% | |
| AAACTGGGTTTACTCTTGAT+TGG | - | chr1_1:7452802-7452821 | Msa0005010:intron | 35.0% | |
| CTTGTGAAGTAAAATGGTTG+TGG | - | chr1_1:7452916-7452935 | Msa0005010:CDS | 35.0% | |
| GTTTCTCACAAACACTTATG+TGG | + | chr1_1:7453006-7453025 | None:intergenic | 35.0% | |
| CATAAGTGTTTGTGAGAAAC+GGG | - | chr1_1:7453006-7453025 | Msa0005010:intron | 35.0% | |
| ATAAGTGTTTGTGAGAAACG+GGG | - | chr1_1:7453007-7453026 | Msa0005010:intron | 35.0% | |
| AACCCTAATACCCAATAGAA+AGG | - | chr1_1:7453159-7453178 | Msa0005010:intron | 35.0% | |
| CTAGAAGCTAAATCCTAACT+GGG | + | chr1_1:7453285-7453304 | None:intergenic | 35.0% | |
| !! | AGGATTTAGCTTCTAGCTTA+TGG | - | chr1_1:7453289-7453308 | Msa0005010:intron | 35.0% |
| !! | GGATTTAGCTTCTAGCTTAT+GGG | - | chr1_1:7453290-7453309 | Msa0005010:intron | 35.0% |
| TGATTCTTTGCCTATGAGAA+AGG | - | chr1_1:7453344-7453363 | Msa0005010:intron | 35.0% | |
| AGAAAGAATCACCAGCAATT+AGG | + | chr1_1:7453545-7453564 | None:intergenic | 35.0% | |
| TTAGGTGTATCTGCAAACAA+GGG | + | chr1_1:7453647-7453666 | None:intergenic | 35.0% | |
| ATTAGGTGTATCTGCAAACA+AGG | + | chr1_1:7453648-7453667 | None:intergenic | 35.0% | |
| !! | CATGCTTTGAAGAACAAAAC+AGG | + | chr1_1:7453994-7454013 | None:intergenic | 35.0% |
| !! | CTGTTTTGTTCTTCAAAGCA+TGG | - | chr1_1:7453992-7454011 | Msa0005010:intron | 35.0% |
| ! | TAACCTTTCTGTCTGGTTTA+AGG | - | chr1_1:7454027-7454046 | Msa0005010:intron | 35.0% |
| GGAGAATGAACAAAGAGAAA+GGG | + | chr1_1:7454225-7454244 | None:intergenic | 35.0% | |
| AGGAGAATGAACAAAGAGAA+AGG | + | chr1_1:7454226-7454245 | None:intergenic | 35.0% | |
| ! | CTCCTTTTTCCCATAACAAT+AGG | - | chr1_1:7454241-7454260 | Msa0005010:intron | 35.0% |
| GTCCTATTGTTATGGGAAAA+AGG | + | chr1_1:7454246-7454265 | None:intergenic | 35.0% | |
| ! | TCTGCAAAAAGCATACATCT+CGG | + | chr1_1:7454349-7454368 | None:intergenic | 35.0% |
| AACTTCAGTAAAAGGAGAAG+TGG | - | chr1_1:7454490-7454509 | Msa0005010:intron | 35.0% | |
| ACTTCAGTAAAAGGAGAAGT+GGG | - | chr1_1:7454491-7454510 | Msa0005010:intron | 35.0% | |
| ATATCATACCCCAAGTTACA+CGG | - | chr1_1:7454542-7454561 | Msa0005010:intron | 35.0% | |
| TATCTAAACCGTGTAACTTG+GGG | + | chr1_1:7454553-7454572 | None:intergenic | 35.0% | |
| GATATCTAAACCGTGTAACT+TGG | + | chr1_1:7454555-7454574 | None:intergenic | 35.0% | |
| GTTACACGGTTTAGATATCT+TGG | - | chr1_1:7454556-7454575 | Msa0005010:intron | 35.0% | |
| !! | TTCTCCGTCATTTTGTACTA+TGG | + | chr1_1:7454584-7454603 | None:intergenic | 35.0% |
| TACATCATCGTATTCAAGCT+GGG | - | chr1_1:7454617-7454636 | Msa0005010:intron | 35.0% | |
| ! | AAAGTACCACTTAAGCTGAA+AGG | - | chr1_1:7454682-7454701 | Msa0005010:intron | 35.0% |
| AACTTTCCTTTCAGCTTAAG+TGG | + | chr1_1:7454691-7454710 | None:intergenic | 35.0% | |
| AGCTGAAAGGAAAGTTCTAT+CGG | - | chr1_1:7454695-7454714 | Msa0005010:intron | 35.0% | |
| AGACTAGACATGATAGGATT+AGG | - | chr1_1:7454830-7454849 | Msa0005010:intron | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | - | chr1_1:7454882-7454901 | Msa0005010:intron | 35.0% | |
| TGGTAGAAAATAGGCTTAGA+TGG | - | chr1_1:7454902-7454921 | Msa0005010:intron | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | - | chr1_1:7454907-7454926 | Msa0005010:intron | 35.0% | |
| TTGATCTACTCTTCTTACCA+CGG | + | chr1_1:7454959-7454978 | None:intergenic | 35.0% | |
| GGTAAGAAGAGTAGATCAAA+TGG | - | chr1_1:7454960-7454979 | Msa0005010:intron | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | - | chr1_1:7454963-7454982 | Msa0005010:intron | 35.0% | |
| AGATTTAGAGGTCAATGAGT+TGG | - | chr1_1:7455047-7455066 | Msa0005010:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | - | chr1_1:7455059-7455078 | Msa0005010:intron | 35.0% |
| !! | TACGGATTAGAAAACAATGC+AGG | + | chr1_1:7455182-7455201 | None:intergenic | 35.0% |
| ! | TGGGTAGTTTGCATCAAAAT+TGG | + | chr1_1:7455294-7455313 | None:intergenic | 35.0% |
| !! | TTGTTTTGTTCCTCAAACCA+TGG | - | chr1_1:7455513-7455532 | Msa0005010:intron | 35.0% |
| TTTCTTACTACCATGGTTTG+AGG | + | chr1_1:7455526-7455545 | None:intergenic | 35.0% | |
| TAATCTCAGACTGTTGAATC+CGG | - | chr1_1:7456029-7456048 | Msa0005010:intron | 35.0% | |
| AAGGCAATAGTTAAGTGATC+AGG | + | chr1_1:7456075-7456094 | None:intergenic | 35.0% | |
| TGCTGAATTCCATACTGAAT+TGG | - | chr1_1:7456308-7456327 | Msa0005010:intron | 35.0% | |
| AACAGTTGAGTTCAATCATC+AGG | + | chr1_1:7456534-7456553 | None:intergenic | 35.0% | |
| !! | TTTACTTCTGAAGTTGGACT+TGG | - | chr1_1:7456581-7456600 | Msa0005010:intron | 35.0% |
| TTGACATGGATGTGCAAATA+TGG | + | chr1_1:7456783-7456802 | None:intergenic | 35.0% | |
| GGCTTATCAAGTAAAAGCAA+AGG | + | chr1_1:7457041-7457060 | None:intergenic | 35.0% | |
| ! | CGGTTCTGTCTATTTTCAAA+AGG | - | chr1_1:7457152-7457171 | Msa0005010:intron | 35.0% |
| ACCAAACACTTAGTTATGCT+AGG | - | chr1_1:7457223-7457242 | Msa0005010:intron | 35.0% | |
| CCAAACACTTAGTTATGCTA+GGG | - | chr1_1:7457224-7457243 | Msa0005010:intron | 35.0% | |
| GAGGATTGTCTGAAAAGAAA+TGG | - | chr1_1:7457254-7457273 | Msa0005010:intron | 35.0% | |
| CTGAAAAGAAATGGATGCAA+TGG | - | chr1_1:7457263-7457282 | Msa0005010:intron | 35.0% | |
| !! | TGTTTAGTTCTGATTCAGTG+TGG | - | chr1_1:7457327-7457346 | Msa0005010:intron | 35.0% |
| ! | AGAAAGAAAAGGGTACACAA+AGG | + | chr1_1:7457404-7457423 | None:intergenic | 35.0% |
| GACTACTATATCGTCAGAAT+TGG | - | chr1_1:7457460-7457479 | Msa0005010:five_prime_UTR | 35.0% | |
| ! | TTGGGAATTGCGGTTTTCAA+AGG | + | chr1_1:7452355-7452374 | None:intergenic | 40.0% |
| ! | GGGATCCATATCGTGATTTT+GGG | + | chr1_1:7452373-7452392 | None:intergenic | 40.0% |
| ! | TGGGATCCATATCGTGATTT+TGG | + | chr1_1:7452374-7452393 | None:intergenic | 40.0% |
| AAATCTCCTTTCCCAGCTTA+AGG | - | chr1_1:7452467-7452486 | Msa0005010:three_prime_UTR | 40.0% | |
| GTTAGAGTGTACCTTAAGCT+GGG | + | chr1_1:7452481-7452500 | None:intergenic | 40.0% | |
| ! | CACAGCATTGAAATTAGGGT+AGG | + | chr1_1:7452526-7452545 | None:intergenic | 40.0% |
| !! | CTCTTGATTGGTTGTTTCTG+TGG | - | chr1_1:7452814-7452833 | Msa0005010:intron | 40.0% |
| TAAGTGTTTGTGAGAAACGG+GGG | - | chr1_1:7453008-7453027 | Msa0005010:intron | 40.0% | |
| !! | AGATTTTAGTGGCAGGTTGT+TGG | - | chr1_1:7453111-7453130 | Msa0005010:intron | 40.0% |
| !! | GATTTTAGTGGCAGGTTGTT+GGG | - | chr1_1:7453112-7453131 | Msa0005010:intron | 40.0% |
| TGGTTTATACTGACCCAGTT+AGG | - | chr1_1:7453269-7453288 | Msa0005010:intron | 40.0% | |
| GCTAGAAGCTAAATCCTAAC+TGG | + | chr1_1:7453286-7453305 | None:intergenic | 40.0% | |
| CCTATGAGAAAGGCCTTAAA+CGG | - | chr1_1:7453354-7453373 | Msa0005010:CDS | 40.0% | |
| ! | GTCGAGAATTTTGTCCAAAC+TGG | - | chr1_1:7453499-7453518 | Msa0005010:CDS | 40.0% |
| ! | TAGTGGCATTTTTCACTTGC+AGG | - | chr1_1:7453592-7453611 | Msa0005010:intron | 40.0% |
| !! | ACTTGCAGGTGTTACTAACA+GGG | - | chr1_1:7453606-7453625 | Msa0005010:intron | 40.0% |
| ! | GTTAGCTCTTGAACTGCATT+AGG | + | chr1_1:7453665-7453684 | None:intergenic | 40.0% |
| TACAGGTAAGAAAACAACGC+AGG | + | chr1_1:7453757-7453776 | None:intergenic | 40.0% | |
| TACGGGTAAGAAAACAATGC+AGG | + | chr1_1:7453805-7453824 | None:intergenic | 40.0% | |
| GGATAGATAACCTTTCTGTC+TGG | - | chr1_1:7454020-7454039 | Msa0005010:intron | 40.0% | |
| TTCATTCCAATCAGTTGCTC+TGG | - | chr1_1:7454192-7454211 | Msa0005010:intron | 40.0% | |
| AAAAGACCAGAGCAACTGAT+TGG | + | chr1_1:7454201-7454220 | None:intergenic | 40.0% | |
| TGGTGCAGTCCTATTGTTAT+GGG | + | chr1_1:7454253-7454272 | None:intergenic | 40.0% | |
| TTGGTGCAGTCCTATTGTTA+TGG | + | chr1_1:7454254-7454273 | None:intergenic | 40.0% | |
| ATAACAATAGGACTGCACCA+AGG | - | chr1_1:7454253-7454272 | Msa0005010:intron | 40.0% | |
| TAACAATAGGACTGCACCAA+GGG | - | chr1_1:7454254-7454273 | Msa0005010:intron | 40.0% | |
| !! | ATTCCGTCTTGTTTCTACTC+AGG | + | chr1_1:7454459-7454478 | None:intergenic | 40.0% |
| TCTACCTTAGAGGTGAAAGT+TGG | - | chr1_1:7454514-7454533 | Msa0005010:intron | 40.0% | |
| ATCTCCAACTTTCACCTCTA+AGG | + | chr1_1:7454521-7454540 | None:intergenic | 40.0% | |
| GGGTCCATAGTACAAAATGA+CGG | - | chr1_1:7454577-7454596 | Msa0005010:intron | 40.0% | |
| GTACATCATCGTATTCAAGC+TGG | - | chr1_1:7454616-7454635 | Msa0005010:intron | 40.0% | |
| GTGGTAAGACTAGACATGAT+AGG | - | chr1_1:7454824-7454843 | Msa0005010:intron | 40.0% | |
| TGACATCATTAGAGAGAGAG+TGG | - | chr1_1:7454855-7454874 | Msa0005010:intron | 40.0% | |
| GACATCATTAGAGAGAGAGT+GGG | - | chr1_1:7454856-7454875 | Msa0005010:intron | 40.0% | |
| ACATCATTAGAGAGAGAGTG+GGG | - | chr1_1:7454857-7454876 | Msa0005010:intron | 40.0% | |
| AGTCAGGTTAAAAGAGGTAG+AGG | - | chr1_1:7454988-7455007 | Msa0005010:intron | 40.0% | |
| !! | GAAGTGTGTGTTTAGTTCTG+CGG | + | chr1_1:7455442-7455461 | None:intergenic | 40.0% |
| TTTGTCATGCAGCAAGACAA+AGG | + | chr1_1:7455594-7455613 | None:intergenic | 40.0% | |
| TAACTGCTTGTCAGGTGAAT+AGG | - | chr1_1:7455792-7455811 | Msa0005010:intron | 40.0% | |
| AACCTTACTACACTGATGCA+CGG | - | chr1_1:7455960-7455979 | Msa0005010:intron | 40.0% | |
| ! | ACAGGTTGAGACCAAGTATT+GGG | + | chr1_1:7456263-7456282 | None:intergenic | 40.0% |
| ! | AACAGGTTGAGACCAAGTAT+TGG | + | chr1_1:7456264-7456283 | None:intergenic | 40.0% |
| TGAGACTTCTTGTGCAGAAT+AGG | - | chr1_1:7456283-7456302 | Msa0005010:intron | 40.0% | |
| TTGGAGCAATCCTTTATGGA+AGG | - | chr1_1:7456384-7456403 | Msa0005010:intron | 40.0% | |
| TGGAGCAATCCTTTATGGAA+GGG | - | chr1_1:7456385-7456404 | Msa0005010:intron | 40.0% | |
| ! | ATCTTTTGGCAAAGACCATC+AGG | - | chr1_1:7456472-7456491 | Msa0005010:intron | 40.0% |
| AGTTCAATCATCAGGTAGGT+AGG | + | chr1_1:7456526-7456545 | None:intergenic | 40.0% | |
| GTTGAGTTCAATCATCAGGT+AGG | + | chr1_1:7456530-7456549 | None:intergenic | 40.0% | |
| ! | TTCGGCCAAATTTTCATTGC+AGG | + | chr1_1:7456705-7456724 | None:intergenic | 40.0% |
| AATGTCGTGCAAAGAGATTC+AGG | + | chr1_1:7457062-7457081 | None:intergenic | 40.0% | |
| !! | CACGACATTGTTTTGTTCTC+CGG | - | chr1_1:7457073-7457092 | Msa0005010:intron | 40.0% |
| CGTTCTTGATTTCCCATTCA+GGG | + | chr1_1:7457134-7457153 | None:intergenic | 40.0% | |
| CCTGAATGGGAAATCAAGAA+CGG | - | chr1_1:7457132-7457151 | Msa0005010:intron | 40.0% | |
| !! | TGTTTGGTTGATGAGTTGCA+GGG | + | chr1_1:7457211-7457230 | None:intergenic | 40.0% |
| CCCTAGCATAACTAAGTGTT+TGG | + | chr1_1:7457227-7457246 | None:intergenic | 40.0% | |
| ACTTAGTTATGCTAGGGAGT+TGG | - | chr1_1:7457230-7457249 | Msa0005010:intron | 40.0% | |
| CTGGGAAAGGAGATTTGAAG+CGG | + | chr1_1:7452463-7452482 | None:intergenic | 45.0% | |
| AGTGTACCTTAAGCTGGGAA+AGG | + | chr1_1:7452476-7452495 | None:intergenic | 45.0% | |
| GGTTAGAGTGTACCTTAAGC+TGG | + | chr1_1:7452482-7452501 | None:intergenic | 45.0% | |
| AACGGGGGTTTACTCTTGAT+TGG | - | chr1_1:7453023-7453042 | Msa0005010:intron | 45.0% | |
| AGGTTGTTGGGTGGCAATTT+GGG | - | chr1_1:7453124-7453143 | Msa0005010:intron | 45.0% | |
| GCAGCTTGAATTCATAGCTC+TGG | - | chr1_1:7453249-7453268 | Msa0005010:intron | 45.0% | |
| ! | CCGTTTAAGGCCTTTCTCAT+AGG | + | chr1_1:7453357-7453376 | None:intergenic | 45.0% |
| !! | CACTTGCAGGTGTTACTAAC+AGG | - | chr1_1:7453605-7453624 | Msa0005010:intron | 45.0% |
| TATCTGCAAACAAGGGTGGA+AGG | + | chr1_1:7453640-7453659 | None:intergenic | 45.0% | |
| ATCACAAAGAGCTCATAGCC+AGG | + | chr1_1:7453922-7453941 | None:intergenic | 45.0% | |
| TCCATACCTCCTGTCATAGT+TGG | - | chr1_1:7453960-7453979 | Msa0005010:intron | 45.0% | |
| TCCAACTATGACAGGAGGTA+TGG | + | chr1_1:7453964-7453983 | None:intergenic | 45.0% | |
| GATCCACTTCCAACTATGAC+AGG | + | chr1_1:7453972-7453991 | None:intergenic | 45.0% | |
| GTTCTTCAAAGCATGGCAGT+AGG | - | chr1_1:7453999-7454018 | Msa0005010:intron | 45.0% | |
| CCACCTTAAACCAGACAGAA+AGG | + | chr1_1:7454033-7454052 | None:intergenic | 45.0% | |
| ! | CCTTTCTGTCTGGTTTAAGG+TGG | - | chr1_1:7454030-7454049 | Msa0005010:intron | 45.0% |
| ACTGTTCTATCTGGTTGTGC+TGG | - | chr1_1:7454144-7454163 | Msa0005010:intron | 45.0% | |
| !! | TACATCTCGGTGCTAACTCT+TGG | + | chr1_1:7454336-7454355 | None:intergenic | 45.0% |
| ! | GCAGATGATGTAGTCTTGCT+TGG | - | chr1_1:7454364-7454383 | Msa0005010:intron | 45.0% |
| ATCATCGTATTCAAGCTGGG+TGG | - | chr1_1:7454620-7454639 | Msa0005010:intron | 45.0% | |
| TTCAAGCTGGGTGGTTGAAA+TGG | - | chr1_1:7454629-7454648 | Msa0005010:intron | 45.0% | |
| TTGAAATGGAGAAGAGCCTC+AGG | - | chr1_1:7454643-7454662 | Msa0005010:intron | 45.0% | |
| CTTATCGCACAAAACACCTG+AGG | + | chr1_1:7454662-7454681 | None:intergenic | 45.0% | |
| ACCGGCAATGTTGTATGGTA+CGG | - | chr1_1:7454729-7454748 | Msa0005010:intron | 45.0% | |
| TCCGTACCATACAACATTGC+CGG | + | chr1_1:7454733-7454752 | None:intergenic | 45.0% | |
| TGTTGTATGGTACGGAGTGT+TGG | - | chr1_1:7454737-7454756 | Msa0005010:intron | 45.0% | |
| ! | GTTGTATGGTACGGAGTGTT+GGG | - | chr1_1:7454738-7454757 | Msa0005010:intron | 45.0% |
| CGCTTACTTTACTCTCGTGT+TGG | + | chr1_1:7454774-7454793 | None:intergenic | 45.0% | |
| CGAGAGTAAAGTAAGCGTAG+CGG | - | chr1_1:7454777-7454796 | Msa0005010:intron | 45.0% | |
| CATCATTAGAGAGAGAGTGG+GGG | - | chr1_1:7454858-7454877 | Msa0005010:intron | 45.0% | |
| AGATCAAATGGAGGAGAGTC+AGG | - | chr1_1:7454972-7454991 | Msa0005010:intron | 45.0% | |
| GAGGAGAGTCAGGTTAAAAG+AGG | - | chr1_1:7454982-7455001 | Msa0005010:intron | 45.0% | |
| AACGCCTTATCCCACTAAGT+GGG | + | chr1_1:7455129-7455148 | None:intergenic | 45.0% | |
| TACCGTGCATCAGTGTAGTA+AGG | + | chr1_1:7455965-7455984 | None:intergenic | 45.0% | |
| TCTGCACAAGAAGTCTCAAC+AGG | + | chr1_1:7456281-7456300 | None:intergenic | 45.0% | |
| ATTGCTTTCATCCACTGCTC+TGG | - | chr1_1:7456332-7456351 | Msa0005010:intron | 45.0% | |
| TCCTTGTATTAAGCATGCCG+TGG | - | chr1_1:7456359-7456378 | Msa0005010:intron | 45.0% | |
| TCCACGGCATGCTTAATACA+AGG | + | chr1_1:7456363-7456382 | None:intergenic | 45.0% | |
| TATTAAGCATGCCGTGGAGT+TGG | - | chr1_1:7456365-7456384 | Msa0005010:intron | 45.0% | |
| AAAGGATTGCTCCAACTCCA+CGG | + | chr1_1:7456379-7456398 | None:intergenic | 45.0% | |
| GGAGTTGGAGCAATCCTTTA+TGG | - | chr1_1:7456380-7456399 | Msa0005010:intron | 45.0% | |
| GGAGCAATCCTTTATGGAAG+GGG | - | chr1_1:7456386-7456405 | Msa0005010:intron | 45.0% | |
| GTTGTATGCCCCTTCCATAA+AGG | + | chr1_1:7456397-7456416 | None:intergenic | 45.0% | |
| ACGTTCAGAGATGAGATAGC+AGG | - | chr1_1:7456828-7456847 | Msa0005010:intron | 45.0% | |
| ! | TTCCAAGAGTTCCTGGTCTT+TGG | + | chr1_1:7456916-7456935 | None:intergenic | 45.0% |
| !! | ATTTCAGGAGCACCCTGAAT+GGG | - | chr1_1:7457119-7457138 | Msa0005010:intron | 45.0% |
| CCGTTCTTGATTTCCCATTC+AGG | + | chr1_1:7457135-7457154 | None:intergenic | 45.0% | |
| !! | AGGGAGGGTATTTCTTTGCA+AGG | + | chr1_1:7457192-7457211 | None:intergenic | 45.0% |
| !! | GTGTTTGGTTGATGAGTTGC+AGG | + | chr1_1:7457212-7457231 | None:intergenic | 45.0% |
| ! | ATTTAGAATGGTGGTGCGCA+AGG | - | chr1_1:7457578-7457597 | Msa0005010:five_prime_UTR | 45.0% |
| !!! | TTTTATTAAAAAAAAAATAC+GGG | + | chr1_1:7453822-7453841 | None:intergenic | 5.0% |
| !!! | CTTTTATTAAAAAAAAAATA+CGG | + | chr1_1:7453823-7453842 | None:intergenic | 5.0% |
| TTTAGTGGCAGGTTGTTGGG+TGG | - | chr1_1:7453115-7453134 | Msa0005010:intron | 50.0% | |
| CAGGTTGTTGGGTGGCAATT+TGG | - | chr1_1:7453123-7453142 | Msa0005010:intron | 50.0% | |
| GGTGTATCTGCAAACAAGGG+TGG | + | chr1_1:7453644-7453663 | None:intergenic | 50.0% | |
| CCACTTCCAACTATGACAGG+AGG | + | chr1_1:7453969-7453988 | None:intergenic | 50.0% | |
| CCTCCTGTCATAGTTGGAAG+TGG | - | chr1_1:7453966-7453985 | Msa0005010:intron | 50.0% | |
| AAGGACTTAGGGTTGACCCT+TGG | + | chr1_1:7454273-7454292 | None:intergenic | 50.0% | |
| ! | TAGTCTTGCTTGGTGAGTCG+AGG | - | chr1_1:7454374-7454393 | Msa0005010:intron | 50.0% |
| ! | AGTCTTGCTTGGTGAGTCGA+GGG | - | chr1_1:7454375-7454394 | Msa0005010:intron | 50.0% |
| GAGTCGAGGGAGGAGTTAAA+CGG | - | chr1_1:7454388-7454407 | Msa0005010:intron | 50.0% | |
| AGTCGAGGGAGGAGTTAAAC+GGG | - | chr1_1:7454389-7454408 | Msa0005010:intron | 50.0% | |
| TAAACGGGAGGCTAGAGACT+TGG | - | chr1_1:7454404-7454423 | Msa0005010:intron | 50.0% | |
| ! | AGGCAAGCCTTAGAAGCGTA+CGG | - | chr1_1:7454427-7454446 | Msa0005010:intron | 50.0% |
| !! | CCGTCTTGTTTCTACTCAGG+CGG | + | chr1_1:7454456-7454475 | None:intergenic | 50.0% |
| CCGCCTGAGTAGAAACAAGA+CGG | - | chr1_1:7454453-7454472 | Msa0005010:intron | 50.0% | |
| GAGAAGTGGGTCTACCTTAG+AGG | - | chr1_1:7454504-7454523 | Msa0005010:intron | 50.0% | |
| GTCAGACCGGCAATGTTGTA+TGG | - | chr1_1:7454724-7454743 | Msa0005010:intron | 50.0% | |
| ! | AAGTAAGCGTAGCGGAGATG+AGG | - | chr1_1:7454785-7454804 | Msa0005010:intron | 50.0% |
| AGGATGTTGCGTTGGATGAG+TGG | - | chr1_1:7454805-7454824 | Msa0005010:intron | 50.0% | |
| TCTTCTTACCACGGCGTCTA+CGG | + | chr1_1:7454950-7454969 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr1_1:7455124-7455143 | None:intergenic | 50.0% | |
| ACGCCTTATCCCACTAAGTG+GGG | + | chr1_1:7455128-7455147 | None:intergenic | 50.0% | |
| CAACGCCTTATCCCACTAAG+TGG | + | chr1_1:7455130-7455149 | None:intergenic | 50.0% | |
| TGGGTACTCCTGAGGAGATT+GGG | + | chr1_1:7456244-7456263 | None:intergenic | 50.0% | |
| TTGGGTACTCCTGAGGAGAT+TGG | + | chr1_1:7456245-7456264 | None:intergenic | 50.0% | |
| !! | CCAAGTATTGGGTACTCCTG+AGG | + | chr1_1:7456252-7456271 | None:intergenic | 50.0% |
| !! | CCTCAGGAGTACCCAATACT+TGG | - | chr1_1:7456249-7456268 | Msa0005010:intron | 50.0% |
| ACAAGGATTCTCCAGAGCAG+TGG | + | chr1_1:7456346-7456365 | None:intergenic | 50.0% | |
| TCTGTCGAGCACTCAAGACA+CGG | + | chr1_1:7456419-7456438 | None:intergenic | 50.0% | |
| GATAGCAGGATGCAGTGAGA+AGG | - | chr1_1:7456842-7456861 | Msa0005010:intron | 50.0% | |
| ! | GTTGCTGTTCACCAAAGACC+AGG | - | chr1_1:7456902-7456921 | Msa0005010:intron | 50.0% |
| CACCAAAGACCAGGAACTCT+TGG | - | chr1_1:7456911-7456930 | Msa0005010:intron | 50.0% | |
| !! | GATTTCAGGAGCACCCTGAA+TGG | - | chr1_1:7457118-7457137 | Msa0005010:intron | 50.0% |
| !! | TGGTTGATGAGTTGCAGGGA+GGG | + | chr1_1:7457207-7457226 | None:intergenic | 50.0% |
| !! | TTGGTTGATGAGTTGCAGGG+AGG | + | chr1_1:7457208-7457227 | None:intergenic | 50.0% |
| GTTATGCTAGGGAGTTGGAG+AGG | - | chr1_1:7457235-7457254 | Msa0005010:intron | 50.0% | |
| GCGGAAACCGTACGCTTCTA+AGG | + | chr1_1:7454437-7454456 | None:intergenic | 55.0% | |
| CTATCGGACAGCAGTCAGAC+CGG | - | chr1_1:7454711-7454730 | Msa0005010:intron | 55.0% | |
| !! | GTATGGTACGGAGTGTTGGG+CGG | - | chr1_1:7454741-7454760 | Msa0005010:intron | 55.0% |
| CGGAGATGAGGATGTTGCGT+TGG | - | chr1_1:7454797-7454816 | Msa0005010:intron | 55.0% | |
| CTTCTTACCACGGCGTCTAC+GGG | + | chr1_1:7454949-7454968 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr1_1:7455116-7455135 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr1_1:7455115-7455134 | Msa0005010:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr1_1:7455116-7455135 | Msa0005010:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr1_1:7455122-7455141 | Msa0005010:intron | 55.0% | |
| GGGTACTCCTGAGGAGATTG+GGG | + | chr1_1:7456243-7456262 | None:intergenic | 55.0% | |
| ! | ACAGAGGTGTGCGAGCTTCA+AGG | + | chr1_1:7456746-7456765 | None:intergenic | 55.0% |
| ! | CTTGCTTGGTGAGTCGAGGG+AGG | - | chr1_1:7454378-7454397 | Msa0005010:intron | 60.0% |
| CGAGGGAGGAGTTAAACGGG+AGG | - | chr1_1:7454392-7454411 | Msa0005010:intron | 60.0% | |
| ACGGGAGGCTAGAGACTTGG+AGG | - | chr1_1:7454407-7454426 | Msa0005010:intron | 60.0% | |
| GAGAAGACCCGTAGACGCCG+TGG | - | chr1_1:7454939-7454958 | Msa0005010:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 7452236 | 7457604 | 7452236 | ID=Msa0005010;Name=Msa0005010 |
| chr1_1 | mRNA | 7452236 | 7457604 | 7452236 | ID=Msa0005010-mRNA-1;Parent=Msa0005010;Name=Msa0005010-mRNA-1;_AED=0.04;_eAED=0.04;_QI=148|1|1|1|1|1|6|338|267 |
| chr1_1 | exon | 7452236 | 7452714 | 7452236 | ID=Msa0005010-mRNA-1:exon:2626;Parent=Msa0005010-mRNA-1 |
| chr1_1 | exon | 7452893 | 7453004 | 7452893 | ID=Msa0005010-mRNA-1:exon:2625;Parent=Msa0005010-mRNA-1 |
| chr1_1 | exon | 7453347 | 7453610 | 7453347 | ID=Msa0005010-mRNA-1:exon:2624;Parent=Msa0005010-mRNA-1 |
| chr1_1 | exon | 7453859 | 7453961 | 7453859 | ID=Msa0005010-mRNA-1:exon:2623;Parent=Msa0005010-mRNA-1 |
| chr1_1 | exon | 7456148 | 7456226 | 7456148 | ID=Msa0005010-mRNA-1:exon:2622;Parent=Msa0005010-mRNA-1 |
| chr1_1 | exon | 7457352 | 7457604 | 7457352 | ID=Msa0005010-mRNA-1:exon:2621;Parent=Msa0005010-mRNA-1 |
| chr1_1 | five_prime_UTR | 7457457 | 7457604 | 7457457 | ID=Msa0005010-mRNA-1:five_prime_utr;Parent=Msa0005010-mRNA-1 |
| chr1_1 | CDS | 7457352 | 7457456 | 7457352 | ID=Msa0005010-mRNA-1:cds;Parent=Msa0005010-mRNA-1 |
| chr1_1 | CDS | 7456148 | 7456226 | 7456148 | ID=Msa0005010-mRNA-1:cds;Parent=Msa0005010-mRNA-1 |
| chr1_1 | CDS | 7453859 | 7453961 | 7453859 | ID=Msa0005010-mRNA-1:cds;Parent=Msa0005010-mRNA-1 |
| chr1_1 | CDS | 7453347 | 7453610 | 7453347 | ID=Msa0005010-mRNA-1:cds;Parent=Msa0005010-mRNA-1 |
| chr1_1 | CDS | 7452893 | 7453004 | 7452893 | ID=Msa0005010-mRNA-1:cds;Parent=Msa0005010-mRNA-1 |
| chr1_1 | CDS | 7452574 | 7452714 | 7452574 | ID=Msa0005010-mRNA-1:cds;Parent=Msa0005010-mRNA-1 |
| chr1_1 | three_prime_UTR | 7452236 | 7452573 | 7452236 | ID=Msa0005010-mRNA-1:three_prime_utr;Parent=Msa0005010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
