Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053950 | A0A072VER0 | 96.581 | 351 | 12 | 0 | 1 | 351 | 1 | 351 | 0.0 | 702 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0053950 | Msa0096500 | 0.954441 | 2.935852e-112 | -8.615850e-47 |
| Msa0053950 | Msa0148420 | 0.817315 | 3.515411e-52 | -8.615850e-47 |
| Msa0053950 | Msa1347080 | 0.979704 | 1.479577e-148 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053950 | MtrunA17_Chr1g0150621 | 96.581 | 351 | 12 | 0 | 1 | 351 | 1 | 351 | 0.0 | 702 |
| Msa0053950 | MtrunA17_Chr3g0136591 | 57.895 | 57 | 23 | 1 | 289 | 344 | 1 | 57 | 4.61e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053950 | AT5G21280.2 | 57.000 | 100 | 33 | 2 | 4 | 103 | 6 | 95 | 4.48e-23 | 97.8 |
| Msa0053950 | AT5G21280.1 | 57.000 | 100 | 33 | 2 | 4 | 103 | 6 | 95 | 7.30e-23 | 97.4 |
Find 49 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAAATTTCTTGAAGAAAA+TGG | 0.148225 | 1_2:-8500778 | Msa0053950:CDS |
| TGTTGTTGTTATTAAGTAAA+AGG | 0.179289 | 1_2:+8501081 | None:intergenic |
| TTGACATTGAGAAGGATTTA+AGG | 0.233891 | 1_2:-8501337 | Msa0053950:CDS |
| AGGATTTAAGGTTCAATTCT+AGG | 0.243711 | 1_2:-8501325 | Msa0053950:CDS |
| TTCAATCCTAAAGTTTGATT+TGG | 0.246187 | 1_2:+8501140 | None:intergenic |
| ATGGAATGATACTATGAATT+TGG | 0.276126 | 1_2:-8500817 | Msa0053950:CDS |
| GTATTGTTCATGGTTTCTTT+TGG | 0.306243 | 1_2:+8501662 | None:intergenic |
| TTGCATGATGGATAAATCTT+AGG | 0.307927 | 1_2:+8501296 | None:intergenic |
| ACCCTCCCAAATCAAACTTT+AGG | 0.328417 | 1_2:-8501146 | Msa0053950:CDS |
| ACAATCTTTGGTATTGTTCA+TGG | 0.335277 | 1_2:+8501652 | None:intergenic |
| GGAGAAAATGATGAAGAAAT+AGG | 0.340088 | 1_2:+8501197 | None:intergenic |
| TCAAGAAAGACTTCTAAATA+TGG | 0.345355 | 1_2:-8501516 | Msa0053950:CDS |
| ATGGAAGAAATGAGATCATT+AGG | 0.369233 | 1_2:-8500858 | Msa0053950:CDS |
| TCAATCCTAAAGTTTGATTT+GGG | 0.370962 | 1_2:+8501141 | None:intergenic |
| TTTCTTAAACTTTGTTGTCT+TGG | 0.371667 | 1_2:+8501608 | None:intergenic |
| TTTAGAAGTCTTTCTTGATA+AGG | 0.374410 | 1_2:+8501521 | None:intergenic |
| AGTTGTAACCCTTGATTCAA+TGG | 0.375357 | 1_2:+8500926 | None:intergenic |
| GAAGGAACTTCATGATCATT+TGG | 0.380061 | 1_2:+8500996 | None:intergenic |
| TGTGATACTTTATTAATTGA+AGG | 0.389073 | 1_2:+8500978 | None:intergenic |
| TAGTGCGTACATTCGAAGTT+TGG | 0.407364 | 1_2:-8501708 | Msa0053950:CDS |
| AGCCGTGGATGATAAACTTA+TGG | 0.408848 | 1_2:-8500877 | Msa0053950:CDS |
| TTCAATGGTATCAACCTCTA+AGG | 0.421714 | 1_2:+8500941 | None:intergenic |
| GTTGTTGTTATTAAGTAAAA+GGG | 0.426331 | 1_2:+8501082 | None:intergenic |
| TGTTGAAATCATGTAAACTA+AGG | 0.431291 | 1_2:+8501117 | None:intergenic |
| AACTTAAAACATGTGAAAGT+TGG | 0.442891 | 1_2:+8501360 | None:intergenic |
| CACTTCCACACTTTCACACA+TGG | 0.459856 | 1_2:-8501220 | Msa0053950:CDS |
| ATTAGGAGAACAATATCAAA+TGG | 0.463158 | 1_2:-8500841 | Msa0053950:CDS |
| TGAAGAAGGTGTGACCTTAG+AGG | 0.469277 | 1_2:-8500955 | Msa0053950:CDS |
| AGGTTGATACCATTGAATCA+AGG | 0.469976 | 1_2:-8500935 | Msa0053950:CDS |
| TTCCATAAGTTTATCATCCA+CGG | 0.471668 | 1_2:+8500875 | None:intergenic |
| ATTTGGTTACATCAACTTTG+TGG | 0.479810 | 1_2:-8500800 | Msa0053950:CDS |
| TGAATCAAGGGTTACAACTA+AGG | 0.480638 | 1_2:-8500922 | Msa0053950:CDS |
| AGCTGCTCTATGAAACTTCA+AGG | 0.495899 | 1_2:+8501466 | None:intergenic |
| TCCTAAAGTTTGATTTGGGA+GGG | 0.506107 | 1_2:+8501145 | None:intergenic |
| GAAAATTTGTCATTGCATGA+TGG | 0.520699 | 1_2:+8501284 | None:intergenic |
| GGTTGATACCATTGAATCAA+GGG | 0.522133 | 1_2:-8500934 | Msa0053950:CDS |
| GAGAACAATATCAAATGGAA+TGG | 0.524719 | 1_2:-8500836 | Msa0053950:CDS |
| ATCCTAAAGTTTGATTTGGG+AGG | 0.543720 | 1_2:+8501144 | None:intergenic |
| TGTACGCACTAGAGAGATCA+TGG | 0.546995 | 1_2:+8501720 | None:intergenic |
| AATAAAGTATCACATGAAGA+AGG | 0.553615 | 1_2:-8500969 | Msa0053950:CDS |
| AAGACTTCTAAATATGGCTG+AGG | 0.562565 | 1_2:-8501510 | Msa0053950:CDS |
| GTTACAACTAAGGTCGATGA+AGG | 0.563088 | 1_2:-8500912 | Msa0053950:CDS |
| AGCTATGAAACAAGCTAGTG+AGG | 0.606916 | 1_2:-8501447 | Msa0053950:CDS |
| TGATGCATATACAACACAAG+AGG | 0.624458 | 1_2:-8500751 | Msa0053950:CDS |
| CATGTCATGTCTTTGAATCG+TGG | 0.627308 | 1_2:-8500722 | Msa0053950:CDS |
| ATAGGCCATGTGTGAAAGTG+TGG | 0.642059 | 1_2:+8501215 | None:intergenic |
| AGGAGAATGTCATTCAGCCG+TGG | 0.671234 | 1_2:-8500892 | Msa0053950:CDS |
| TCATTTGGTAGAGAAAGTGA+AGG | 0.702280 | 1_2:+8501011 | None:intergenic |
| AAGTGTGGAAGTGAAAGTGA+AGG | 0.709037 | 1_2:+8501230 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAAATTTTCAGCCAAAA+GGG | + | chr1_2:8501272-8501291 | None:intergenic | 20.0% |
| !!! | AATTTAAATTTTCAGCCAAA+AGG | + | chr1_2:8501273-8501292 | None:intergenic | 20.0% |
| !!! | GTTGTTGTTATTAAGTAAAA+GGG | + | chr1_2:8501362-8501381 | None:intergenic | 20.0% |
| !!! | TGTTGTTGTTATTAAGTAAA+AGG | + | chr1_2:8501363-8501382 | None:intergenic | 20.0% |
| !! | TGTGATACTTTATTAATTGA+AGG | + | chr1_2:8501466-8501485 | None:intergenic | 20.0% |
| !! | GTTAAATTTCTTGAAGAAAA+TGG | - | chr1_2:8501663-8501682 | Msa0053950:CDS | 20.0% |
| !!! | ATTTAAATTTTCAGCCAAAA+GGG | + | chr1_2:8501272-8501291 | None:intergenic | 20.0% |
| !!! | AATTTAAATTTTCAGCCAAA+AGG | + | chr1_2:8501273-8501292 | None:intergenic | 20.0% |
| !!! | GTTGTTGTTATTAAGTAAAA+GGG | + | chr1_2:8501362-8501381 | None:intergenic | 20.0% |
| !!! | TGTTGTTGTTATTAAGTAAA+AGG | + | chr1_2:8501363-8501382 | None:intergenic | 20.0% |
| !! | TGTGATACTTTATTAATTGA+AGG | + | chr1_2:8501466-8501485 | None:intergenic | 20.0% |
| !! | GTTAAATTTCTTGAAGAAAA+TGG | - | chr1_2:8501663-8501682 | Msa0053950:CDS | 20.0% |
| !! | TTTCTTAAACTTTGTTGTCT+TGG | + | chr1_2:8500836-8500855 | None:intergenic | 25.0% |
| ! | ACAAAAAACAAGTTAGAAGA+AGG | - | chr1_2:8500882-8500901 | Msa0053950:CDS | 25.0% |
| ! | TTTAGAAGTCTTTCTTGATA+AGG | + | chr1_2:8500923-8500942 | None:intergenic | 25.0% |
| ! | TCAAGAAAGACTTCTAAATA+TGG | - | chr1_2:8500925-8500944 | Msa0053950:CDS | 25.0% |
| ! | AACTTAAAACATGTGAAAGT+TGG | + | chr1_2:8501084-8501103 | None:intergenic | 25.0% |
| !!! | TTTAAGTTTTGACATTGAGA+AGG | - | chr1_2:8501096-8501115 | Msa0053950:CDS | 25.0% |
| !! | TCAATCCTAAAGTTTGATTT+GGG | + | chr1_2:8501303-8501322 | None:intergenic | 25.0% |
| ! | TTCAATCCTAAAGTTTGATT+TGG | + | chr1_2:8501304-8501323 | None:intergenic | 25.0% |
| ! | TGTTGAAATCATGTAAACTA+AGG | + | chr1_2:8501327-8501346 | None:intergenic | 25.0% |
| !! | AATAAAGTATCACATGAAGA+AGG | - | chr1_2:8501472-8501491 | Msa0053950:CDS | 25.0% |
| ! | ATTAGGAGAACAATATCAAA+TGG | - | chr1_2:8501600-8501619 | Msa0053950:CDS | 25.0% |
| ! | ATGGAATGATACTATGAATT+TGG | - | chr1_2:8501624-8501643 | Msa0053950:CDS | 25.0% |
| !! | TTTCTTAAACTTTGTTGTCT+TGG | + | chr1_2:8500836-8500855 | None:intergenic | 25.0% |
| ! | ACAAAAAACAAGTTAGAAGA+AGG | - | chr1_2:8500882-8500901 | Msa0053950:CDS | 25.0% |
| ! | TTTAGAAGTCTTTCTTGATA+AGG | + | chr1_2:8500923-8500942 | None:intergenic | 25.0% |
| ! | TCAAGAAAGACTTCTAAATA+TGG | - | chr1_2:8500925-8500944 | Msa0053950:CDS | 25.0% |
| ! | AACTTAAAACATGTGAAAGT+TGG | + | chr1_2:8501084-8501103 | None:intergenic | 25.0% |
| !!! | TTTAAGTTTTGACATTGAGA+AGG | - | chr1_2:8501096-8501115 | Msa0053950:CDS | 25.0% |
| !! | TCAATCCTAAAGTTTGATTT+GGG | + | chr1_2:8501303-8501322 | None:intergenic | 25.0% |
| ! | TTCAATCCTAAAGTTTGATT+TGG | + | chr1_2:8501304-8501323 | None:intergenic | 25.0% |
| ! | TGTTGAAATCATGTAAACTA+AGG | + | chr1_2:8501327-8501346 | None:intergenic | 25.0% |
| !! | AATAAAGTATCACATGAAGA+AGG | - | chr1_2:8501472-8501491 | Msa0053950:CDS | 25.0% |
| ! | ATTAGGAGAACAATATCAAA+TGG | - | chr1_2:8501600-8501619 | Msa0053950:CDS | 25.0% |
| ! | ATGGAATGATACTATGAATT+TGG | - | chr1_2:8501624-8501643 | Msa0053950:CDS | 25.0% |
| ! | GTATTGTTCATGGTTTCTTT+TGG | + | chr1_2:8500782-8500801 | None:intergenic | 30.0% |
| ACAATCTTTGGTATTGTTCA+TGG | + | chr1_2:8500792-8500811 | None:intergenic | 30.0% | |
| !! | ACCAAAGATTGTGTTTTTGA+TGG | - | chr1_2:8500800-8500819 | Msa0053950:CDS | 30.0% |
| ACCATCAAAAACACAATCTT+TGG | + | chr1_2:8500804-8500823 | None:intergenic | 30.0% | |
| TTGACATTGAGAAGGATTTA+AGG | - | chr1_2:8501104-8501123 | Msa0053950:CDS | 30.0% | |
| ! | AGGATTTAAGGTTCAATTCT+AGG | - | chr1_2:8501116-8501135 | Msa0053950:CDS | 30.0% |
| !! | TTGCATGATGGATAAATCTT+AGG | + | chr1_2:8501148-8501167 | None:intergenic | 30.0% |
| GAAAATTTGTCATTGCATGA+TGG | + | chr1_2:8501160-8501179 | None:intergenic | 30.0% | |
| AGGATGAGAAAAAGAAGAAT+AGG | + | chr1_2:8501194-8501213 | None:intergenic | 30.0% | |
| GGAGAAAATGATGAAGAAAT+AGG | + | chr1_2:8501247-8501266 | None:intergenic | 30.0% | |
| TTCCATAAGTTTATCATCCA+CGG | + | chr1_2:8501569-8501588 | None:intergenic | 30.0% | |
| ATGGAAGAAATGAGATCATT+AGG | - | chr1_2:8501583-8501602 | Msa0053950:CDS | 30.0% | |
| GAGAACAATATCAAATGGAA+TGG | - | chr1_2:8501605-8501624 | Msa0053950:CDS | 30.0% | |
| ATTTGGTTACATCAACTTTG+TGG | - | chr1_2:8501641-8501660 | Msa0053950:CDS | 30.0% | |
| ! | GTATTGTTCATGGTTTCTTT+TGG | + | chr1_2:8500782-8500801 | None:intergenic | 30.0% |
| ACAATCTTTGGTATTGTTCA+TGG | + | chr1_2:8500792-8500811 | None:intergenic | 30.0% | |
| !! | ACCAAAGATTGTGTTTTTGA+TGG | - | chr1_2:8500800-8500819 | Msa0053950:CDS | 30.0% |
| ACCATCAAAAACACAATCTT+TGG | + | chr1_2:8500804-8500823 | None:intergenic | 30.0% | |
| TTGACATTGAGAAGGATTTA+AGG | - | chr1_2:8501104-8501123 | Msa0053950:CDS | 30.0% | |
| ! | AGGATTTAAGGTTCAATTCT+AGG | - | chr1_2:8501116-8501135 | Msa0053950:CDS | 30.0% |
| !! | TTGCATGATGGATAAATCTT+AGG | + | chr1_2:8501148-8501167 | None:intergenic | 30.0% |
| GAAAATTTGTCATTGCATGA+TGG | + | chr1_2:8501160-8501179 | None:intergenic | 30.0% | |
| AGGATGAGAAAAAGAAGAAT+AGG | + | chr1_2:8501194-8501213 | None:intergenic | 30.0% | |
| GGAGAAAATGATGAAGAAAT+AGG | + | chr1_2:8501247-8501266 | None:intergenic | 30.0% | |
| TTCCATAAGTTTATCATCCA+CGG | + | chr1_2:8501569-8501588 | None:intergenic | 30.0% | |
| ATGGAAGAAATGAGATCATT+AGG | - | chr1_2:8501583-8501602 | Msa0053950:CDS | 30.0% | |
| GAGAACAATATCAAATGGAA+TGG | - | chr1_2:8501605-8501624 | Msa0053950:CDS | 30.0% | |
| ATTTGGTTACATCAACTTTG+TGG | - | chr1_2:8501641-8501660 | Msa0053950:CDS | 30.0% | |
| !!! | CATGGTTTCTTTTGGTTTTG+TGG | + | chr1_2:8500774-8500793 | None:intergenic | 35.0% |
| AAGACTTCTAAATATGGCTG+AGG | - | chr1_2:8500931-8500950 | Msa0053950:CDS | 35.0% | |
| ! | ATCATTTTCTCCAACCCTTT+TGG | - | chr1_2:8501255-8501274 | Msa0053950:CDS | 35.0% |
| ! | AAATTTTCAGCCAAAAGGGT+TGG | + | chr1_2:8501268-8501287 | None:intergenic | 35.0% |
| !! | TCCTAAAGTTTGATTTGGGA+GGG | + | chr1_2:8501299-8501318 | None:intergenic | 35.0% |
| !! | ATCCTAAAGTTTGATTTGGG+AGG | + | chr1_2:8501300-8501319 | None:intergenic | 35.0% |
| TCATTTGGTAGAGAAAGTGA+AGG | + | chr1_2:8501433-8501452 | None:intergenic | 35.0% | |
| GAAGGAACTTCATGATCATT+TGG | + | chr1_2:8501448-8501467 | None:intergenic | 35.0% | |
| TTCAATGGTATCAACCTCTA+AGG | + | chr1_2:8501503-8501522 | None:intergenic | 35.0% | |
| !! | AGGTTGATACCATTGAATCA+AGG | - | chr1_2:8501506-8501525 | Msa0053950:CDS | 35.0% |
| ! | GGTTGATACCATTGAATCAA+GGG | - | chr1_2:8501507-8501526 | Msa0053950:CDS | 35.0% |
| AGTTGTAACCCTTGATTCAA+TGG | + | chr1_2:8501518-8501537 | None:intergenic | 35.0% | |
| TGAATCAAGGGTTACAACTA+AGG | - | chr1_2:8501519-8501538 | Msa0053950:CDS | 35.0% | |
| TGATGCATATACAACACAAG+AGG | - | chr1_2:8501690-8501709 | Msa0053950:CDS | 35.0% | |
| ! | GAATCGTGGAATTTTCAACT+TGG | - | chr1_2:8501733-8501752 | Msa0053950:CDS | 35.0% |
| !!! | CATGGTTTCTTTTGGTTTTG+TGG | + | chr1_2:8500774-8500793 | None:intergenic | 35.0% |
| AAGACTTCTAAATATGGCTG+AGG | - | chr1_2:8500931-8500950 | Msa0053950:CDS | 35.0% | |
| ! | ATCATTTTCTCCAACCCTTT+TGG | - | chr1_2:8501255-8501274 | Msa0053950:CDS | 35.0% |
| ! | AAATTTTCAGCCAAAAGGGT+TGG | + | chr1_2:8501268-8501287 | None:intergenic | 35.0% |
| !! | TCCTAAAGTTTGATTTGGGA+GGG | + | chr1_2:8501299-8501318 | None:intergenic | 35.0% |
| !! | ATCCTAAAGTTTGATTTGGG+AGG | + | chr1_2:8501300-8501319 | None:intergenic | 35.0% |
| TCATTTGGTAGAGAAAGTGA+AGG | + | chr1_2:8501433-8501452 | None:intergenic | 35.0% | |
| GAAGGAACTTCATGATCATT+TGG | + | chr1_2:8501448-8501467 | None:intergenic | 35.0% | |
| TTCAATGGTATCAACCTCTA+AGG | + | chr1_2:8501503-8501522 | None:intergenic | 35.0% | |
| !! | AGGTTGATACCATTGAATCA+AGG | - | chr1_2:8501506-8501525 | Msa0053950:CDS | 35.0% |
| ! | GGTTGATACCATTGAATCAA+GGG | - | chr1_2:8501507-8501526 | Msa0053950:CDS | 35.0% |
| AGTTGTAACCCTTGATTCAA+TGG | + | chr1_2:8501518-8501537 | None:intergenic | 35.0% | |
| TGAATCAAGGGTTACAACTA+AGG | - | chr1_2:8501519-8501538 | Msa0053950:CDS | 35.0% | |
| TGATGCATATACAACACAAG+AGG | - | chr1_2:8501690-8501709 | Msa0053950:CDS | 35.0% | |
| ! | GAATCGTGGAATTTTCAACT+TGG | - | chr1_2:8501733-8501752 | Msa0053950:CDS | 35.0% |
| TAGTGCGTACATTCGAAGTT+TGG | - | chr1_2:8500733-8500752 | Msa0053950:CDS | 40.0% | |
| AGCTGCTCTATGAAACTTCA+AGG | + | chr1_2:8500978-8500997 | None:intergenic | 40.0% | |
| AGCTATGAAACAAGCTAGTG+AGG | - | chr1_2:8500994-8501013 | Msa0053950:CDS | 40.0% | |
| AAGTGTGGAAGTGAAAGTGA+AGG | + | chr1_2:8501214-8501233 | None:intergenic | 40.0% | |
| ACCCTCCCAAATCAAACTTT+AGG | - | chr1_2:8501295-8501314 | Msa0053950:CDS | 40.0% | |
| GTTACAACTAAGGTCGATGA+AGG | - | chr1_2:8501529-8501548 | Msa0053950:CDS | 40.0% | |
| AGCCGTGGATGATAAACTTA+TGG | - | chr1_2:8501564-8501583 | Msa0053950:CDS | 40.0% | |
| CATGTCATGTCTTTGAATCG+TGG | - | chr1_2:8501719-8501738 | Msa0053950:CDS | 40.0% | |
| TAGTGCGTACATTCGAAGTT+TGG | - | chr1_2:8500733-8500752 | Msa0053950:CDS | 40.0% | |
| AGCTGCTCTATGAAACTTCA+AGG | + | chr1_2:8500978-8500997 | None:intergenic | 40.0% | |
| AGCTATGAAACAAGCTAGTG+AGG | - | chr1_2:8500994-8501013 | Msa0053950:CDS | 40.0% | |
| AAGTGTGGAAGTGAAAGTGA+AGG | + | chr1_2:8501214-8501233 | None:intergenic | 40.0% | |
| ACCCTCCCAAATCAAACTTT+AGG | - | chr1_2:8501295-8501314 | Msa0053950:CDS | 40.0% | |
| GTTACAACTAAGGTCGATGA+AGG | - | chr1_2:8501529-8501548 | Msa0053950:CDS | 40.0% | |
| AGCCGTGGATGATAAACTTA+TGG | - | chr1_2:8501564-8501583 | Msa0053950:CDS | 40.0% | |
| CATGTCATGTCTTTGAATCG+TGG | - | chr1_2:8501719-8501738 | Msa0053950:CDS | 40.0% | |
| TGTACGCACTAGAGAGATCA+TGG | + | chr1_2:8500724-8500743 | None:intergenic | 45.0% | |
| CACTTCCACACTTTCACACA+TGG | - | chr1_2:8501221-8501240 | Msa0053950:CDS | 45.0% | |
| ATAGGCCATGTGTGAAAGTG+TGG | + | chr1_2:8501229-8501248 | None:intergenic | 45.0% | |
| ! | TGAAGAAGGTGTGACCTTAG+AGG | - | chr1_2:8501486-8501505 | Msa0053950:CDS | 45.0% |
| TGTACGCACTAGAGAGATCA+TGG | + | chr1_2:8500724-8500743 | None:intergenic | 45.0% | |
| CACTTCCACACTTTCACACA+TGG | - | chr1_2:8501221-8501240 | Msa0053950:CDS | 45.0% | |
| ATAGGCCATGTGTGAAAGTG+TGG | + | chr1_2:8501229-8501248 | None:intergenic | 45.0% | |
| ! | TGAAGAAGGTGTGACCTTAG+AGG | - | chr1_2:8501486-8501505 | Msa0053950:CDS | 45.0% |
| AGGAGAATGTCATTCAGCCG+TGG | - | chr1_2:8501549-8501568 | Msa0053950:CDS | 50.0% | |
| AGGAGAATGTCATTCAGCCG+TGG | - | chr1_2:8501549-8501568 | Msa0053950:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 8500704 | 8501759 | 8500704 | ID=Msa0053950;Name=Msa0053950 |
| chr1_2 | mRNA | 8500704 | 8501759 | 8500704 | ID=Msa0053950-mRNA-1;Parent=Msa0053950;Name=Msa0053950-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|351 |
| chr1_2 | exon | 8500704 | 8501759 | 8500704 | ID=Msa0053950-mRNA-1:exon:3058;Parent=Msa0053950-mRNA-1 |
| chr1_2 | CDS | 8500704 | 8501759 | 8500704 | ID=Msa0053950-mRNA-1:cds;Parent=Msa0053950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
