Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148420 | A0A072VER0 | 96.011 | 351 | 14 | 0 | 1 | 351 | 1 | 351 | 0.0 | 698 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0053950 | Msa0148420 | 0.817315 | 3.515411e-52 | -8.615850e-47 |
| Msa0148420 | Msa0426330 | 0.804562 | 2.035262e-49 | -8.615850e-47 |
| Msa0148420 | Msa1347080 | 0.827954 | 1.175946e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148420 | MtrunA17_Chr1g0150621 | 96.011 | 351 | 14 | 0 | 1 | 351 | 1 | 351 | 0.0 | 698 |
| Msa0148420 | MtrunA17_Chr3g0136591 | 57.895 | 57 | 23 | 1 | 289 | 344 | 1 | 57 | 4.94e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148420 | AT5G21280.2 | 57.000 | 100 | 33 | 2 | 4 | 103 | 6 | 95 | 4.91e-23 | 97.4 |
| Msa0148420 | AT5G21280.1 | 57.000 | 100 | 33 | 2 | 4 | 103 | 6 | 95 | 8.56e-23 | 97.1 |
Find 50 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGTTGTTATTAAATAAA+AGG | 0.136721 | 1_4:+8750028 | None:intergenic |
| GTTAAATTTCTTGAAGAAAA+TGG | 0.148225 | 1_4:-8749725 | Msa0148420:CDS |
| TTGACATTGAGAAGGATTTA+AGG | 0.233891 | 1_4:-8750284 | Msa0148420:CDS |
| AGGATTTAAGGTTCAATTCT+AGG | 0.243711 | 1_4:-8750272 | Msa0148420:CDS |
| TTCAATCCTAAAGTTTGATT+TGG | 0.246187 | 1_4:+8750087 | None:intergenic |
| ATGGAATGATACTATGAATT+TGG | 0.276126 | 1_4:-8749764 | Msa0148420:CDS |
| GTATTGTTCATGGTTTCTTT+TGG | 0.306243 | 1_4:+8750609 | None:intergenic |
| TTGCATGATGGATAAATCTT+AGG | 0.307927 | 1_4:+8750243 | None:intergenic |
| ACCCTCCCAAATCAAACTTT+AGG | 0.328417 | 1_4:-8750093 | Msa0148420:CDS |
| ACAATCTTTGGTATTGTTCA+TGG | 0.335277 | 1_4:+8750599 | None:intergenic |
| GGAGAAAATGATGAAGAAAT+AGG | 0.340088 | 1_4:+8750144 | None:intergenic |
| TCAAGAAAGACTTCTAAATA+TGG | 0.345355 | 1_4:-8750463 | Msa0148420:CDS |
| ATGGAAGAAATGAGATCATT+AGG | 0.369233 | 1_4:-8749805 | Msa0148420:CDS |
| TCAATCCTAAAGTTTGATTT+GGG | 0.370962 | 1_4:+8750088 | None:intergenic |
| TTTCTTAAACTTTGTTGTCT+TGG | 0.371667 | 1_4:+8750555 | None:intergenic |
| TTTAGAAGTCTTTCTTGATA+AGG | 0.374410 | 1_4:+8750468 | None:intergenic |
| AGTTGTAACCCTTGATTCAA+TGG | 0.375357 | 1_4:+8749873 | None:intergenic |
| GAAGGAACTTCATGATCATT+TGG | 0.380061 | 1_4:+8749943 | None:intergenic |
| TGTGATACTTTATTAATTGA+AGG | 0.389073 | 1_4:+8749925 | None:intergenic |
| TAGTGCGTACATTCGAAGTT+TGG | 0.407364 | 1_4:-8750655 | Msa0148420:CDS |
| AGCCGTGGATGATAAACTTA+TGG | 0.408848 | 1_4:-8749824 | Msa0148420:CDS |
| GTTGTTGTTATTAAATAAAA+GGG | 0.415859 | 1_4:+8750029 | None:intergenic |
| TTCAATGGTATCAACCTCTA+AGG | 0.421714 | 1_4:+8749888 | None:intergenic |
| TGTTGAAATCATGTAAACTA+AGG | 0.431291 | 1_4:+8750064 | None:intergenic |
| AACTTAAAACATGTGAAAGT+TGG | 0.442891 | 1_4:+8750307 | None:intergenic |
| CACTTCCACACTTTCACACA+TGG | 0.459856 | 1_4:-8750167 | Msa0148420:CDS |
| ATTAGGAGAACAATATCAAA+TGG | 0.463158 | 1_4:-8749788 | Msa0148420:CDS |
| CATGTCATGTCTTTGAATCA+TGG | 0.468771 | 1_4:-8749669 | Msa0148420:CDS |
| TGAAGAAGGTGTGACCTTAG+AGG | 0.469277 | 1_4:-8749902 | Msa0148420:CDS |
| AGGTTGATACCATTGAATCA+AGG | 0.469976 | 1_4:-8749882 | Msa0148420:CDS |
| TTCCATAAGTTTATCATCCA+CGG | 0.471668 | 1_4:+8749822 | None:intergenic |
| ATTTGGTTACATCAACTTTG+TGG | 0.479810 | 1_4:-8749747 | Msa0148420:CDS |
| TGAATCAAGGGTTACAACTA+AGG | 0.480638 | 1_4:-8749869 | Msa0148420:CDS |
| AGCTGCTCTATGAAACTTCA+AGG | 0.495899 | 1_4:+8750413 | None:intergenic |
| TCCTAAAGTTTGATTTGGGA+GGG | 0.506107 | 1_4:+8750092 | None:intergenic |
| GAAAATTTGTCATTGCATGA+TGG | 0.520699 | 1_4:+8750231 | None:intergenic |
| GGTTGATACCATTGAATCAA+GGG | 0.522133 | 1_4:-8749881 | Msa0148420:CDS |
| GAGAACAATATCAAATGGAA+TGG | 0.524719 | 1_4:-8749783 | Msa0148420:CDS |
| ATCCTAAAGTTTGATTTGGG+AGG | 0.543720 | 1_4:+8750091 | None:intergenic |
| TGTACGCACTAGAGAGATCA+TGG | 0.546995 | 1_4:+8750667 | None:intergenic |
| AATAAAGTATCACATGAAGA+AGG | 0.553615 | 1_4:-8749916 | Msa0148420:CDS |
| AAGACTTCTAAATATGGCTG+AGG | 0.562565 | 1_4:-8750457 | Msa0148420:CDS |
| GTTACAACTAAGGTCGATGA+AGG | 0.563088 | 1_4:-8749859 | Msa0148420:CDS |
| AGAGAAAGTGAAGGAAATGA+TGG | 0.595630 | 1_4:+8749967 | None:intergenic |
| AGCTATGAAACAAGCTAGTG+AGG | 0.606916 | 1_4:-8750394 | Msa0148420:CDS |
| TGATGCATATACAACACAAG+AGG | 0.624458 | 1_4:-8749698 | Msa0148420:CDS |
| ATAGGCCATGTGTGAAAGTG+TGG | 0.642059 | 1_4:+8750162 | None:intergenic |
| AGGAGAATGTCATTCAGCCG+TGG | 0.671234 | 1_4:-8749839 | Msa0148420:CDS |
| TCATTTGGTAGAGAAAGTGA+AGG | 0.702280 | 1_4:+8749958 | None:intergenic |
| AAGTGTGGAAGTGAAAGTGA+AGG | 0.709037 | 1_4:+8750177 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTGTTGTTATTAAATAAAA+GGG | + | chr1_4:8750309-8750328 | None:intergenic | 15.0% |
| !!! | TGTTGTTGTTATTAAATAAA+AGG | + | chr1_4:8750310-8750329 | None:intergenic | 15.0% |
| !!! | GTTGTTGTTATTAAATAAAA+GGG | + | chr1_4:8750309-8750328 | None:intergenic | 15.0% |
| !!! | TGTTGTTGTTATTAAATAAA+AGG | + | chr1_4:8750310-8750329 | None:intergenic | 15.0% |
| !!! | ATTTAAATTTTCAGCCAAAA+GGG | + | chr1_4:8750219-8750238 | None:intergenic | 20.0% |
| !!! | AATTTAAATTTTCAGCCAAA+AGG | + | chr1_4:8750220-8750239 | None:intergenic | 20.0% |
| !! | TGTGATACTTTATTAATTGA+AGG | + | chr1_4:8750413-8750432 | None:intergenic | 20.0% |
| !! | GTTAAATTTCTTGAAGAAAA+TGG | - | chr1_4:8750610-8750629 | Msa0148420:CDS | 20.0% |
| !!! | ATTTAAATTTTCAGCCAAAA+GGG | + | chr1_4:8750219-8750238 | None:intergenic | 20.0% |
| !!! | AATTTAAATTTTCAGCCAAA+AGG | + | chr1_4:8750220-8750239 | None:intergenic | 20.0% |
| !! | TGTGATACTTTATTAATTGA+AGG | + | chr1_4:8750413-8750432 | None:intergenic | 20.0% |
| !! | GTTAAATTTCTTGAAGAAAA+TGG | - | chr1_4:8750610-8750629 | Msa0148420:CDS | 20.0% |
| !! | TTTCTTAAACTTTGTTGTCT+TGG | + | chr1_4:8749783-8749802 | None:intergenic | 25.0% |
| ! | ACAAAAAACAAGTTAGAAGA+AGG | - | chr1_4:8749829-8749848 | Msa0148420:CDS | 25.0% |
| ! | TTTAGAAGTCTTTCTTGATA+AGG | + | chr1_4:8749870-8749889 | None:intergenic | 25.0% |
| ! | TCAAGAAAGACTTCTAAATA+TGG | - | chr1_4:8749872-8749891 | Msa0148420:CDS | 25.0% |
| ! | AACTTAAAACATGTGAAAGT+TGG | + | chr1_4:8750031-8750050 | None:intergenic | 25.0% |
| !!! | TTTAAGTTTTGACATTGAGA+AGG | - | chr1_4:8750043-8750062 | Msa0148420:CDS | 25.0% |
| !! | TCAATCCTAAAGTTTGATTT+GGG | + | chr1_4:8750250-8750269 | None:intergenic | 25.0% |
| ! | TTCAATCCTAAAGTTTGATT+TGG | + | chr1_4:8750251-8750270 | None:intergenic | 25.0% |
| ! | TGTTGAAATCATGTAAACTA+AGG | + | chr1_4:8750274-8750293 | None:intergenic | 25.0% |
| !! | AATAAAGTATCACATGAAGA+AGG | - | chr1_4:8750419-8750438 | Msa0148420:CDS | 25.0% |
| ! | ATTAGGAGAACAATATCAAA+TGG | - | chr1_4:8750547-8750566 | Msa0148420:CDS | 25.0% |
| ! | ATGGAATGATACTATGAATT+TGG | - | chr1_4:8750571-8750590 | Msa0148420:CDS | 25.0% |
| !! | TTTCTTAAACTTTGTTGTCT+TGG | + | chr1_4:8749783-8749802 | None:intergenic | 25.0% |
| ! | ACAAAAAACAAGTTAGAAGA+AGG | - | chr1_4:8749829-8749848 | Msa0148420:CDS | 25.0% |
| ! | TTTAGAAGTCTTTCTTGATA+AGG | + | chr1_4:8749870-8749889 | None:intergenic | 25.0% |
| ! | TCAAGAAAGACTTCTAAATA+TGG | - | chr1_4:8749872-8749891 | Msa0148420:CDS | 25.0% |
| ! | AACTTAAAACATGTGAAAGT+TGG | + | chr1_4:8750031-8750050 | None:intergenic | 25.0% |
| !!! | TTTAAGTTTTGACATTGAGA+AGG | - | chr1_4:8750043-8750062 | Msa0148420:CDS | 25.0% |
| !! | TCAATCCTAAAGTTTGATTT+GGG | + | chr1_4:8750250-8750269 | None:intergenic | 25.0% |
| ! | TTCAATCCTAAAGTTTGATT+TGG | + | chr1_4:8750251-8750270 | None:intergenic | 25.0% |
| ! | TGTTGAAATCATGTAAACTA+AGG | + | chr1_4:8750274-8750293 | None:intergenic | 25.0% |
| !! | AATAAAGTATCACATGAAGA+AGG | - | chr1_4:8750419-8750438 | Msa0148420:CDS | 25.0% |
| ! | ATTAGGAGAACAATATCAAA+TGG | - | chr1_4:8750547-8750566 | Msa0148420:CDS | 25.0% |
| ! | ATGGAATGATACTATGAATT+TGG | - | chr1_4:8750571-8750590 | Msa0148420:CDS | 25.0% |
| ! | GTATTGTTCATGGTTTCTTT+TGG | + | chr1_4:8749729-8749748 | None:intergenic | 30.0% |
| ACAATCTTTGGTATTGTTCA+TGG | + | chr1_4:8749739-8749758 | None:intergenic | 30.0% | |
| !! | ACCAAAGATTGTGTTTTTGA+TGG | - | chr1_4:8749747-8749766 | Msa0148420:CDS | 30.0% |
| ACCATCAAAAACACAATCTT+TGG | + | chr1_4:8749751-8749770 | None:intergenic | 30.0% | |
| TTGACATTGAGAAGGATTTA+AGG | - | chr1_4:8750051-8750070 | Msa0148420:CDS | 30.0% | |
| ! | AGGATTTAAGGTTCAATTCT+AGG | - | chr1_4:8750063-8750082 | Msa0148420:CDS | 30.0% |
| !! | TTGCATGATGGATAAATCTT+AGG | + | chr1_4:8750095-8750114 | None:intergenic | 30.0% |
| GAAAATTTGTCATTGCATGA+TGG | + | chr1_4:8750107-8750126 | None:intergenic | 30.0% | |
| AGGATGAGAAAAAGAAGAAT+AGG | + | chr1_4:8750141-8750160 | None:intergenic | 30.0% | |
| GGAGAAAATGATGAAGAAAT+AGG | + | chr1_4:8750194-8750213 | None:intergenic | 30.0% | |
| TTCCATAAGTTTATCATCCA+CGG | + | chr1_4:8750516-8750535 | None:intergenic | 30.0% | |
| ATGGAAGAAATGAGATCATT+AGG | - | chr1_4:8750530-8750549 | Msa0148420:CDS | 30.0% | |
| GAGAACAATATCAAATGGAA+TGG | - | chr1_4:8750552-8750571 | Msa0148420:CDS | 30.0% | |
| ATTTGGTTACATCAACTTTG+TGG | - | chr1_4:8750588-8750607 | Msa0148420:CDS | 30.0% | |
| ! | GAATCATGGAATTTTCAACT+TGG | - | chr1_4:8750680-8750699 | Msa0148420:CDS | 30.0% |
| ! | GTATTGTTCATGGTTTCTTT+TGG | + | chr1_4:8749729-8749748 | None:intergenic | 30.0% |
| ACAATCTTTGGTATTGTTCA+TGG | + | chr1_4:8749739-8749758 | None:intergenic | 30.0% | |
| !! | ACCAAAGATTGTGTTTTTGA+TGG | - | chr1_4:8749747-8749766 | Msa0148420:CDS | 30.0% |
| ACCATCAAAAACACAATCTT+TGG | + | chr1_4:8749751-8749770 | None:intergenic | 30.0% | |
| TTGACATTGAGAAGGATTTA+AGG | - | chr1_4:8750051-8750070 | Msa0148420:CDS | 30.0% | |
| ! | AGGATTTAAGGTTCAATTCT+AGG | - | chr1_4:8750063-8750082 | Msa0148420:CDS | 30.0% |
| !! | TTGCATGATGGATAAATCTT+AGG | + | chr1_4:8750095-8750114 | None:intergenic | 30.0% |
| GAAAATTTGTCATTGCATGA+TGG | + | chr1_4:8750107-8750126 | None:intergenic | 30.0% | |
| AGGATGAGAAAAAGAAGAAT+AGG | + | chr1_4:8750141-8750160 | None:intergenic | 30.0% | |
| GGAGAAAATGATGAAGAAAT+AGG | + | chr1_4:8750194-8750213 | None:intergenic | 30.0% | |
| TTCCATAAGTTTATCATCCA+CGG | + | chr1_4:8750516-8750535 | None:intergenic | 30.0% | |
| ATGGAAGAAATGAGATCATT+AGG | - | chr1_4:8750530-8750549 | Msa0148420:CDS | 30.0% | |
| GAGAACAATATCAAATGGAA+TGG | - | chr1_4:8750552-8750571 | Msa0148420:CDS | 30.0% | |
| ATTTGGTTACATCAACTTTG+TGG | - | chr1_4:8750588-8750607 | Msa0148420:CDS | 30.0% | |
| ! | GAATCATGGAATTTTCAACT+TGG | - | chr1_4:8750680-8750699 | Msa0148420:CDS | 30.0% |
| !!! | CATGGTTTCTTTTGGTTTTG+TGG | + | chr1_4:8749721-8749740 | None:intergenic | 35.0% |
| AAGACTTCTAAATATGGCTG+AGG | - | chr1_4:8749878-8749897 | Msa0148420:CDS | 35.0% | |
| ! | ATCATTTTCTCCAACCCTTT+TGG | - | chr1_4:8750202-8750221 | Msa0148420:CDS | 35.0% |
| ! | AAATTTTCAGCCAAAAGGGT+TGG | + | chr1_4:8750215-8750234 | None:intergenic | 35.0% |
| !! | TCCTAAAGTTTGATTTGGGA+GGG | + | chr1_4:8750246-8750265 | None:intergenic | 35.0% |
| !! | ATCCTAAAGTTTGATTTGGG+AGG | + | chr1_4:8750247-8750266 | None:intergenic | 35.0% |
| AGAGAAAGTGAAGGAAATGA+TGG | + | chr1_4:8750371-8750390 | None:intergenic | 35.0% | |
| TCATTTGGTAGAGAAAGTGA+AGG | + | chr1_4:8750380-8750399 | None:intergenic | 35.0% | |
| GAAGGAACTTCATGATCATT+TGG | + | chr1_4:8750395-8750414 | None:intergenic | 35.0% | |
| TTCAATGGTATCAACCTCTA+AGG | + | chr1_4:8750450-8750469 | None:intergenic | 35.0% | |
| !! | AGGTTGATACCATTGAATCA+AGG | - | chr1_4:8750453-8750472 | Msa0148420:CDS | 35.0% |
| ! | GGTTGATACCATTGAATCAA+GGG | - | chr1_4:8750454-8750473 | Msa0148420:CDS | 35.0% |
| AGTTGTAACCCTTGATTCAA+TGG | + | chr1_4:8750465-8750484 | None:intergenic | 35.0% | |
| TGAATCAAGGGTTACAACTA+AGG | - | chr1_4:8750466-8750485 | Msa0148420:CDS | 35.0% | |
| TGATGCATATACAACACAAG+AGG | - | chr1_4:8750637-8750656 | Msa0148420:CDS | 35.0% | |
| CATGTCATGTCTTTGAATCA+TGG | - | chr1_4:8750666-8750685 | Msa0148420:CDS | 35.0% | |
| !!! | CATGGTTTCTTTTGGTTTTG+TGG | + | chr1_4:8749721-8749740 | None:intergenic | 35.0% |
| AAGACTTCTAAATATGGCTG+AGG | - | chr1_4:8749878-8749897 | Msa0148420:CDS | 35.0% | |
| ! | ATCATTTTCTCCAACCCTTT+TGG | - | chr1_4:8750202-8750221 | Msa0148420:CDS | 35.0% |
| ! | AAATTTTCAGCCAAAAGGGT+TGG | + | chr1_4:8750215-8750234 | None:intergenic | 35.0% |
| !! | TCCTAAAGTTTGATTTGGGA+GGG | + | chr1_4:8750246-8750265 | None:intergenic | 35.0% |
| !! | ATCCTAAAGTTTGATTTGGG+AGG | + | chr1_4:8750247-8750266 | None:intergenic | 35.0% |
| AGAGAAAGTGAAGGAAATGA+TGG | + | chr1_4:8750371-8750390 | None:intergenic | 35.0% | |
| TCATTTGGTAGAGAAAGTGA+AGG | + | chr1_4:8750380-8750399 | None:intergenic | 35.0% | |
| GAAGGAACTTCATGATCATT+TGG | + | chr1_4:8750395-8750414 | None:intergenic | 35.0% | |
| TTCAATGGTATCAACCTCTA+AGG | + | chr1_4:8750450-8750469 | None:intergenic | 35.0% | |
| !! | AGGTTGATACCATTGAATCA+AGG | - | chr1_4:8750453-8750472 | Msa0148420:CDS | 35.0% |
| ! | GGTTGATACCATTGAATCAA+GGG | - | chr1_4:8750454-8750473 | Msa0148420:CDS | 35.0% |
| AGTTGTAACCCTTGATTCAA+TGG | + | chr1_4:8750465-8750484 | None:intergenic | 35.0% | |
| TGAATCAAGGGTTACAACTA+AGG | - | chr1_4:8750466-8750485 | Msa0148420:CDS | 35.0% | |
| TGATGCATATACAACACAAG+AGG | - | chr1_4:8750637-8750656 | Msa0148420:CDS | 35.0% | |
| CATGTCATGTCTTTGAATCA+TGG | - | chr1_4:8750666-8750685 | Msa0148420:CDS | 35.0% | |
| TAGTGCGTACATTCGAAGTT+TGG | - | chr1_4:8749680-8749699 | Msa0148420:CDS | 40.0% | |
| AGCTGCTCTATGAAACTTCA+AGG | + | chr1_4:8749925-8749944 | None:intergenic | 40.0% | |
| AGCTATGAAACAAGCTAGTG+AGG | - | chr1_4:8749941-8749960 | Msa0148420:CDS | 40.0% | |
| AAGTGTGGAAGTGAAAGTGA+AGG | + | chr1_4:8750161-8750180 | None:intergenic | 40.0% | |
| ACCCTCCCAAATCAAACTTT+AGG | - | chr1_4:8750242-8750261 | Msa0148420:CDS | 40.0% | |
| GTTACAACTAAGGTCGATGA+AGG | - | chr1_4:8750476-8750495 | Msa0148420:CDS | 40.0% | |
| AGCCGTGGATGATAAACTTA+TGG | - | chr1_4:8750511-8750530 | Msa0148420:CDS | 40.0% | |
| TAGTGCGTACATTCGAAGTT+TGG | - | chr1_4:8749680-8749699 | Msa0148420:CDS | 40.0% | |
| AGCTGCTCTATGAAACTTCA+AGG | + | chr1_4:8749925-8749944 | None:intergenic | 40.0% | |
| AGCTATGAAACAAGCTAGTG+AGG | - | chr1_4:8749941-8749960 | Msa0148420:CDS | 40.0% | |
| AAGTGTGGAAGTGAAAGTGA+AGG | + | chr1_4:8750161-8750180 | None:intergenic | 40.0% | |
| ACCCTCCCAAATCAAACTTT+AGG | - | chr1_4:8750242-8750261 | Msa0148420:CDS | 40.0% | |
| GTTACAACTAAGGTCGATGA+AGG | - | chr1_4:8750476-8750495 | Msa0148420:CDS | 40.0% | |
| AGCCGTGGATGATAAACTTA+TGG | - | chr1_4:8750511-8750530 | Msa0148420:CDS | 40.0% | |
| TGTACGCACTAGAGAGATCA+TGG | + | chr1_4:8749671-8749690 | None:intergenic | 45.0% | |
| CACTTCCACACTTTCACACA+TGG | - | chr1_4:8750168-8750187 | Msa0148420:CDS | 45.0% | |
| ATAGGCCATGTGTGAAAGTG+TGG | + | chr1_4:8750176-8750195 | None:intergenic | 45.0% | |
| ! | TGAAGAAGGTGTGACCTTAG+AGG | - | chr1_4:8750433-8750452 | Msa0148420:CDS | 45.0% |
| TGTACGCACTAGAGAGATCA+TGG | + | chr1_4:8749671-8749690 | None:intergenic | 45.0% | |
| CACTTCCACACTTTCACACA+TGG | - | chr1_4:8750168-8750187 | Msa0148420:CDS | 45.0% | |
| ATAGGCCATGTGTGAAAGTG+TGG | + | chr1_4:8750176-8750195 | None:intergenic | 45.0% | |
| ! | TGAAGAAGGTGTGACCTTAG+AGG | - | chr1_4:8750433-8750452 | Msa0148420:CDS | 45.0% |
| AGGAGAATGTCATTCAGCCG+TGG | - | chr1_4:8750496-8750515 | Msa0148420:CDS | 50.0% | |
| AGGAGAATGTCATTCAGCCG+TGG | - | chr1_4:8750496-8750515 | Msa0148420:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 8749651 | 8750706 | 8749651 | ID=Msa0148420;Name=Msa0148420 |
| chr1_4 | mRNA | 8749651 | 8750706 | 8749651 | ID=Msa0148420-mRNA-1;Parent=Msa0148420;Name=Msa0148420-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|351 |
| chr1_4 | exon | 8749651 | 8750706 | 8749651 | ID=Msa0148420-mRNA-1:exon:3708;Parent=Msa0148420-mRNA-1 |
| chr1_4 | CDS | 8749651 | 8750706 | 8749651 | ID=Msa0148420-mRNA-1:cds;Parent=Msa0148420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
