Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054470 | PNX89724.1 | 85.714 | 70 | 10 | 0 | 12 | 81 | 24 | 93 | 9.85e-38 | 131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054470 | sp|Q00624|ASOL_BRANA | 58.730 | 63 | 26 | 0 | 12 | 74 | 478 | 540 | 6.39e-19 | 82.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054470 | A0A2K3MG30 | 85.714 | 70 | 10 | 0 | 12 | 81 | 24 | 93 | 4.71e-38 | 131 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054430 | Msa0054470 | 0.981454 | 1.251023e-152 | -8.615850e-47 |
| Msa0054470 | Msa0146780 | 0.879202 | 1.510460e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054470 | MtrunA17_Chr4g0024861 | 88.732 | 71 | 8 | 0 | 11 | 81 | 468 | 538 | 8.58e-41 | 139 |
| Msa0054470 | MtrunA17_Chr4g0024641 | 91.045 | 67 | 6 | 0 | 15 | 81 | 891 | 957 | 2.23e-38 | 134 |
| Msa0054470 | MtrunA17_Chr4g0024641 | 89.552 | 67 | 7 | 0 | 11 | 77 | 391 | 457 | 1.33e-36 | 129 |
| Msa0054470 | MtrunA17_Chr4g0024641 | 93.651 | 63 | 4 | 0 | 15 | 77 | 457 | 519 | 4.32e-36 | 128 |
| Msa0054470 | MtrunA17_Chr4g0024641 | 93.651 | 63 | 4 | 0 | 15 | 77 | 519 | 581 | 4.32e-36 | 128 |
| Msa0054470 | MtrunA17_Chr4g0024641 | 93.651 | 63 | 4 | 0 | 15 | 77 | 581 | 643 | 4.32e-36 | 128 |
| Msa0054470 | MtrunA17_Chr4g0024641 | 93.651 | 63 | 4 | 0 | 15 | 77 | 643 | 705 | 4.32e-36 | 128 |
| Msa0054470 | MtrunA17_Chr4g0024641 | 93.651 | 63 | 4 | 0 | 15 | 77 | 705 | 767 | 4.32e-36 | 128 |
| Msa0054470 | MtrunA17_Chr4g0024641 | 93.651 | 63 | 4 | 0 | 15 | 77 | 829 | 891 | 4.32e-36 | 128 |
| Msa0054470 | MtrunA17_Chr4g0024641 | 92.063 | 63 | 5 | 0 | 15 | 77 | 767 | 829 | 4.19e-35 | 125 |
| Msa0054470 | MtrunA17_Chr2g0322441 | 85.294 | 68 | 10 | 0 | 12 | 79 | 472 | 539 | 3.33e-37 | 130 |
| Msa0054470 | MtrunA17_Chr4g0038671 | 75.714 | 70 | 17 | 0 | 11 | 80 | 470 | 539 | 8.20e-32 | 115 |
| Msa0054470 | MtrunA17_Chr1g0157341 | 71.429 | 70 | 20 | 0 | 11 | 80 | 470 | 539 | 1.15e-31 | 115 |
| Msa0054470 | MtrunA17_Chr4g0075071 | 75.385 | 65 | 16 | 0 | 12 | 76 | 473 | 537 | 2.65e-31 | 114 |
| Msa0054470 | MtrunA17_Chr3g0143671 | 65.217 | 69 | 24 | 0 | 12 | 80 | 472 | 540 | 7.30e-28 | 104 |
| Msa0054470 | MtrunA17_Chr8g0374271 | 59.420 | 69 | 28 | 0 | 12 | 80 | 472 | 540 | 2.26e-22 | 89.0 |
| Msa0054470 | MtrunA17_Chr5g0402831 | 57.971 | 69 | 29 | 0 | 12 | 80 | 469 | 537 | 1.06e-21 | 87.0 |
| Msa0054470 | MtrunA17_Chr4g0043251 | 52.381 | 63 | 30 | 0 | 12 | 74 | 476 | 538 | 1.07e-17 | 75.5 |
| Msa0054470 | MtrunA17_Chr4g0056511 | 47.692 | 65 | 34 | 0 | 11 | 75 | 487 | 551 | 2.09e-16 | 72.0 |
| Msa0054470 | MtrunA17_Chr8g0374261 | 50.769 | 65 | 32 | 0 | 12 | 76 | 470 | 534 | 3.12e-16 | 71.6 |
| Msa0054470 | MtrunA17_Chr3g0121161 | 49.206 | 63 | 32 | 0 | 12 | 74 | 515 | 577 | 3.85e-15 | 68.6 |
| Msa0054470 | MtrunA17_Chr3g0121151 | 49.206 | 63 | 32 | 0 | 12 | 74 | 515 | 577 | 4.00e-15 | 68.6 |
| Msa0054470 | MtrunA17_Chr3g0121171 | 49.206 | 63 | 32 | 0 | 12 | 74 | 475 | 537 | 5.16e-15 | 68.2 |
| Msa0054470 | MtrunA17_Chr3g0121171 | 49.206 | 63 | 32 | 0 | 12 | 74 | 1050 | 1112 | 5.16e-15 | 68.2 |
| Msa0054470 | MtrunA17_Chr3g0121171 | 49.206 | 63 | 32 | 0 | 12 | 74 | 1625 | 1687 | 5.16e-15 | 68.2 |
| Msa0054470 | MtrunA17_Chr3g0121171 | 49.206 | 63 | 32 | 0 | 12 | 74 | 2191 | 2253 | 5.16e-15 | 68.2 |
| Msa0054470 | MtrunA17_Chr4g0043261 | 49.206 | 63 | 32 | 0 | 12 | 74 | 470 | 532 | 5.66e-15 | 67.8 |
| Msa0054470 | MtrunA17_Chr3g0079321 | 46.032 | 63 | 34 | 0 | 12 | 74 | 490 | 552 | 3.04e-13 | 63.2 |
| Msa0054470 | MtrunA17_Chr1g0197301 | 44.444 | 63 | 35 | 0 | 12 | 74 | 268 | 330 | 5.49e-13 | 62.0 |
| Msa0054470 | MtrunA17_Chr7g0234061 | 42.857 | 63 | 35 | 1 | 12 | 74 | 488 | 549 | 6.66e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054470 | AT1G21850.1 | 69.565 | 69 | 21 | 0 | 12 | 80 | 469 | 537 | 4.88e-30 | 110 |
| Msa0054470 | AT4G22010.1 | 67.143 | 70 | 23 | 0 | 11 | 80 | 468 | 537 | 1.75e-29 | 109 |
| Msa0054470 | AT4G38420.1 | 69.014 | 71 | 22 | 0 | 11 | 81 | 477 | 547 | 4.54e-29 | 108 |
| Msa0054470 | AT1G76160.1 | 72.308 | 65 | 18 | 0 | 12 | 76 | 469 | 533 | 4.87e-29 | 108 |
| Msa0054470 | AT1G41830.1 | 66.667 | 69 | 23 | 0 | 12 | 80 | 470 | 538 | 1.80e-28 | 106 |
| Msa0054470 | AT1G21860.1 | 68.116 | 69 | 22 | 0 | 12 | 80 | 469 | 537 | 2.37e-28 | 106 |
| Msa0054470 | AT4G28090.1 | 69.697 | 66 | 20 | 0 | 11 | 76 | 472 | 537 | 1.47e-27 | 103 |
| Msa0054470 | AT3G13400.2 | 60.317 | 63 | 25 | 0 | 12 | 74 | 476 | 538 | 2.13e-21 | 86.7 |
| Msa0054470 | AT3G13400.1 | 60.317 | 63 | 25 | 0 | 12 | 74 | 476 | 538 | 2.13e-21 | 86.7 |
| Msa0054470 | AT1G55560.1 | 58.730 | 63 | 26 | 0 | 12 | 74 | 475 | 537 | 5.34e-20 | 82.8 |
| Msa0054470 | AT1G55570.1 | 57.143 | 63 | 27 | 0 | 12 | 74 | 479 | 541 | 7.38e-20 | 82.0 |
| Msa0054470 | AT3G13390.1 | 58.730 | 63 | 26 | 0 | 12 | 74 | 478 | 540 | 7.74e-20 | 82.0 |
| Msa0054470 | AT5G66920.1 | 53.623 | 69 | 32 | 0 | 12 | 80 | 477 | 545 | 1.24e-18 | 78.6 |
| Msa0054470 | AT2G23630.2 | 50.769 | 65 | 32 | 0 | 12 | 76 | 476 | 540 | 6.19e-16 | 71.2 |
| Msa0054470 | AT2G23630.1 | 50.769 | 65 | 32 | 0 | 12 | 76 | 471 | 535 | 6.43e-16 | 70.9 |
| Msa0054470 | AT4G37160.1 | 50.769 | 65 | 32 | 0 | 12 | 76 | 473 | 537 | 7.52e-16 | 70.9 |
| Msa0054470 | AT1G75790.1 | 45.070 | 71 | 33 | 1 | 12 | 76 | 474 | 544 | 7.58e-15 | 67.8 |
| Msa0054470 | AT4G25240.2 | 45.312 | 64 | 35 | 0 | 11 | 74 | 488 | 551 | 3.29e-14 | 66.2 |
| Msa0054470 | AT4G25240.1 | 45.312 | 64 | 35 | 0 | 11 | 74 | 488 | 551 | 3.29e-14 | 66.2 |
| Msa0054470 | AT5G51480.1 | 43.750 | 64 | 36 | 0 | 11 | 74 | 488 | 551 | 1.17e-13 | 64.7 |
| Msa0054470 | AT4G12420.1 | 42.188 | 64 | 37 | 0 | 11 | 74 | 485 | 548 | 2.70e-12 | 60.8 |
| Msa0054470 | AT4G12420.2 | 42.188 | 64 | 37 | 0 | 11 | 74 | 485 | 548 | 2.70e-12 | 60.8 |
| Msa0054470 | AT5G48450.1 | 41.538 | 65 | 37 | 1 | 12 | 75 | 480 | 544 | 6.66e-12 | 59.7 |
| Msa0054470 | AT5G48450.2 | 40.909 | 66 | 38 | 1 | 11 | 75 | 479 | 544 | 1.03e-11 | 58.9 |
Find 24 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTGGGCAAGACAGTATT+TGG | 0.172946 | 1_2:-9204158 | Msa0054470:CDS |
| TGAAGTGCATTGCTTGTAAT+AGG | 0.279583 | 1_2:+9204079 | None:intergenic |
| AATACACTCTAAGATAAAAT+TGG | 0.334224 | 1_2:+9204131 | None:intergenic |
| CTTGTACTTTGAAACCTTGA+AGG | 0.365098 | 1_2:-9204843 | Msa0054470:intron |
| GTCCAGTCATTAAACCTTCA+AGG | 0.380201 | 1_2:+9204829 | None:intergenic |
| TCATCTCTCAATGAATTTGC+AGG | 0.381836 | 1_2:+9204106 | None:intergenic |
| GGAATGTGAGGTCTGAGAAT+TGG | 0.449805 | 1_2:-9204174 | Msa0054470:CDS |
| GAAGTGCATTGCTTGTAATA+GGG | 0.454722 | 1_2:+9204080 | None:intergenic |
| GAATGTGAGGTCTGAGAATT+GGG | 0.454791 | 1_2:-9204173 | Msa0054470:CDS |
| AATTGGGCAAGACAGTATTT+GGG | 0.467279 | 1_2:-9204157 | Msa0054470:CDS |
| TACTGTGCAGTCCATGACTT+TGG | 0.507467 | 1_2:+9204223 | None:intergenic |
| TTGCTACCAATTACTAATTG+TGG | 0.521580 | 1_2:+9204035 | None:intergenic |
| ACACTCTAAGATAAAATTGG+TGG | 0.562579 | 1_2:+9204134 | None:intergenic |
| GACTGCACAGTACATGCCAT+TGG | 0.563858 | 1_2:-9204212 | Msa0054470:CDS |
| GTACATGCCATTGGATAATG+TGG | 0.568290 | 1_2:-9204203 | Msa0054470:CDS |
| CACATTCCCACATTATCCAA+TGG | 0.568508 | 1_2:+9204196 | None:intergenic |
| CACAGGTGTATCCAAAGTCA+TGG | 0.577502 | 1_2:-9204234 | Msa0054470:intron |
| TCAAGGTTTCAAAGTACAAG+AGG | 0.580792 | 1_2:+9204846 | None:intergenic |
| ATGTGGGAATGTGGAATGTG+AGG | 0.600216 | 1_2:-9204186 | Msa0054470:CDS |
| CAATGCACTTCAGTGTGGCA+AGG | 0.617833 | 1_2:-9204068 | Msa0054470:CDS |
| TACATGCCATTGGATAATGT+GGG | 0.658434 | 1_2:-9204202 | Msa0054470:CDS |
| TCCTTATAAAATGAAAGACG+TGG | 0.666691 | 1_2:-9204873 | None:intergenic |
| CATTGGATAATGTGGGAATG+TGG | 0.674160 | 1_2:-9204195 | Msa0054470:CDS |
| ACAAGCAATGCACTTCAGTG+TGG | 0.696188 | 1_2:-9204073 | Msa0054470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTAAATTCTATAGA+TGG | - | chr1_2:9204362-9204381 | Msa0054470:intron | 10.0% |
| !!! | TTTTTTTTAAATTCTATAGA+TGG | - | chr1_2:9204362-9204381 | Msa0054470:intron | 10.0% |
| !!! | TGGACATTTATTTTGATAAA+AGG | - | chr1_2:9204100-9204119 | Msa0054470:CDS | 20.0% |
| !!! | GAAGATACTAATAATCATTT+TGG | - | chr1_2:9204615-9204634 | Msa0054470:intron | 20.0% |
| !!! | AATACACTCTAAGATAAAAT+TGG | + | chr1_2:9204783-9204802 | None:intergenic | 20.0% |
| !!! | TGGACATTTATTTTGATAAA+AGG | - | chr1_2:9204100-9204119 | Msa0054470:CDS | 20.0% |
| !!! | GAAGATACTAATAATCATTT+TGG | - | chr1_2:9204615-9204634 | Msa0054470:intron | 20.0% |
| !!! | AATACACTCTAAGATAAAAT+TGG | + | chr1_2:9204783-9204802 | None:intergenic | 20.0% |
| !!! | TAGCTTTAAAGTGAATAAGT+TGG | - | chr1_2:9204197-9204216 | Msa0054470:CDS | 25.0% |
| !!! | AGCTTTAAAGTGAATAAGTT+GGG | - | chr1_2:9204198-9204217 | Msa0054470:CDS | 25.0% |
| ! | GGACATTACATAATATATGT+TGG | + | chr1_2:9204246-9204265 | None:intergenic | 25.0% |
| ! | TAAATTTAACTCGATTGGTA+TGG | + | chr1_2:9204267-9204286 | None:intergenic | 25.0% |
| ! | TACCAATCGAGTTAAATTTA+TGG | - | chr1_2:9204267-9204286 | Msa0054470:intron | 25.0% |
| ! | ACCAATCGAGTTAAATTTAT+GGG | - | chr1_2:9204268-9204287 | Msa0054470:intron | 25.0% |
| !!! | TAGCTTTAAAGTGAATAAGT+TGG | - | chr1_2:9204197-9204216 | Msa0054470:CDS | 25.0% |
| !!! | AGCTTTAAAGTGAATAAGTT+GGG | - | chr1_2:9204198-9204217 | Msa0054470:CDS | 25.0% |
| ! | GGACATTACATAATATATGT+TGG | + | chr1_2:9204246-9204265 | None:intergenic | 25.0% |
| ! | TAAATTTAACTCGATTGGTA+TGG | + | chr1_2:9204267-9204286 | None:intergenic | 25.0% |
| ! | TACCAATCGAGTTAAATTTA+TGG | - | chr1_2:9204267-9204286 | Msa0054470:intron | 25.0% |
| ! | ACCAATCGAGTTAAATTTAT+GGG | - | chr1_2:9204268-9204287 | Msa0054470:intron | 25.0% |
| TCCCATAAATTTAACTCGAT+TGG | + | chr1_2:9204272-9204291 | None:intergenic | 30.0% | |
| GTATGAACTATCTTGACAAA+TGG | - | chr1_2:9204312-9204331 | Msa0054470:intron | 30.0% | |
| ! | AAAATTGAAGTACTAGTCCA+TGG | + | chr1_2:9204342-9204361 | None:intergenic | 30.0% |
| CTCTTGATATTAGATGTTAG+TGG | - | chr1_2:9204395-9204414 | Msa0054470:intron | 30.0% | |
| ! | TTTGGCCTTTAACATGATTA+AGG | - | chr1_2:9204633-9204652 | Msa0054470:intron | 30.0% |
| ! | TTGGCCTTTAACATGATTAA+GGG | - | chr1_2:9204634-9204653 | Msa0054470:intron | 30.0% |
| CAAACCCTTAATCATGTTAA+AGG | + | chr1_2:9204641-9204660 | None:intergenic | 30.0% | |
| GACTTTCATATTTCATACAC+AGG | - | chr1_2:9204660-9204679 | Msa0054470:intron | 30.0% | |
| !! | ACACTCTAAGATAAAATTGG+TGG | + | chr1_2:9204780-9204799 | None:intergenic | 30.0% |
| TCCCATAAATTTAACTCGAT+TGG | + | chr1_2:9204272-9204291 | None:intergenic | 30.0% | |
| GTATGAACTATCTTGACAAA+TGG | - | chr1_2:9204312-9204331 | Msa0054470:intron | 30.0% | |
| ! | AAAATTGAAGTACTAGTCCA+TGG | + | chr1_2:9204342-9204361 | None:intergenic | 30.0% |
| CTCTTGATATTAGATGTTAG+TGG | - | chr1_2:9204395-9204414 | Msa0054470:intron | 30.0% | |
| ! | TTTGGCCTTTAACATGATTA+AGG | - | chr1_2:9204633-9204652 | Msa0054470:intron | 30.0% |
| ! | TTGGCCTTTAACATGATTAA+GGG | - | chr1_2:9204634-9204653 | Msa0054470:intron | 30.0% |
| CAAACCCTTAATCATGTTAA+AGG | + | chr1_2:9204641-9204660 | None:intergenic | 30.0% | |
| GACTTTCATATTTCATACAC+AGG | - | chr1_2:9204660-9204679 | Msa0054470:intron | 30.0% | |
| !! | ACACTCTAAGATAAAATTGG+TGG | + | chr1_2:9204780-9204799 | None:intergenic | 30.0% |
| TCAAGGTTTCAAAGTACAAG+AGG | + | chr1_2:9204068-9204087 | None:intergenic | 35.0% | |
| !! | CTTGTACTTTGAAACCTTGA+AGG | - | chr1_2:9204068-9204087 | Msa0054470:CDS | 35.0% |
| AACCTTGAAGGTTTAATGAC+TGG | - | chr1_2:9204080-9204099 | Msa0054470:CDS | 35.0% | |
| TACATGCCATTGGATAATGT+GGG | - | chr1_2:9204709-9204728 | Msa0054470:intron | 35.0% | |
| AATTGGGCAAGACAGTATTT+GGG | - | chr1_2:9204754-9204773 | Msa0054470:intron | 35.0% | |
| TCATCTCTCAATGAATTTGC+AGG | + | chr1_2:9204808-9204827 | None:intergenic | 35.0% | |
| GAAGTGCATTGCTTGTAATA+GGG | + | chr1_2:9204834-9204853 | None:intergenic | 35.0% | |
| TGAAGTGCATTGCTTGTAAT+AGG | + | chr1_2:9204835-9204854 | None:intergenic | 35.0% | |
| TCAAGGTTTCAAAGTACAAG+AGG | + | chr1_2:9204068-9204087 | None:intergenic | 35.0% | |
| !! | CTTGTACTTTGAAACCTTGA+AGG | - | chr1_2:9204068-9204087 | Msa0054470:CDS | 35.0% |
| AACCTTGAAGGTTTAATGAC+TGG | - | chr1_2:9204080-9204099 | Msa0054470:CDS | 35.0% | |
| TACATGCCATTGGATAATGT+GGG | - | chr1_2:9204709-9204728 | Msa0054470:intron | 35.0% | |
| AATTGGGCAAGACAGTATTT+GGG | - | chr1_2:9204754-9204773 | Msa0054470:intron | 35.0% | |
| TCATCTCTCAATGAATTTGC+AGG | + | chr1_2:9204808-9204827 | None:intergenic | 35.0% | |
| GAAGTGCATTGCTTGTAATA+GGG | + | chr1_2:9204834-9204853 | None:intergenic | 35.0% | |
| TGAAGTGCATTGCTTGTAAT+AGG | + | chr1_2:9204835-9204854 | None:intergenic | 35.0% | |
| GTCCAGTCATTAAACCTTCA+AGG | + | chr1_2:9204085-9204104 | None:intergenic | 40.0% | |
| ! | ATTGAAGTACTAGTCCATGG+TGG | + | chr1_2:9204339-9204358 | None:intergenic | 40.0% |
| GTACATGCCATTGGATAATG+TGG | - | chr1_2:9204708-9204727 | Msa0054470:intron | 40.0% | |
| CACATTCCCACATTATCCAA+TGG | + | chr1_2:9204718-9204737 | None:intergenic | 40.0% | |
| CATTGGATAATGTGGGAATG+TGG | - | chr1_2:9204716-9204735 | Msa0054470:intron | 40.0% | |
| GAATGTGAGGTCTGAGAATT+GGG | - | chr1_2:9204738-9204757 | Msa0054470:intron | 40.0% | |
| GAATTGGGCAAGACAGTATT+TGG | - | chr1_2:9204753-9204772 | Msa0054470:intron | 40.0% | |
| GTCCAGTCATTAAACCTTCA+AGG | + | chr1_2:9204085-9204104 | None:intergenic | 40.0% | |
| ! | ATTGAAGTACTAGTCCATGG+TGG | + | chr1_2:9204339-9204358 | None:intergenic | 40.0% |
| GTACATGCCATTGGATAATG+TGG | - | chr1_2:9204708-9204727 | Msa0054470:intron | 40.0% | |
| CACATTCCCACATTATCCAA+TGG | + | chr1_2:9204718-9204737 | None:intergenic | 40.0% | |
| CATTGGATAATGTGGGAATG+TGG | - | chr1_2:9204716-9204735 | Msa0054470:intron | 40.0% | |
| GAATGTGAGGTCTGAGAATT+GGG | - | chr1_2:9204738-9204757 | Msa0054470:intron | 40.0% | |
| GAATTGGGCAAGACAGTATT+TGG | - | chr1_2:9204753-9204772 | Msa0054470:intron | 40.0% | |
| TCTTGACAAATGGTCCACCA+TGG | - | chr1_2:9204322-9204341 | Msa0054470:intron | 45.0% | |
| CACAGGTGTATCCAAAGTCA+TGG | - | chr1_2:9204677-9204696 | Msa0054470:intron | 45.0% | |
| TACTGTGCAGTCCATGACTT+TGG | + | chr1_2:9204691-9204710 | None:intergenic | 45.0% | |
| ATGTGGGAATGTGGAATGTG+AGG | - | chr1_2:9204725-9204744 | Msa0054470:intron | 45.0% | |
| GGAATGTGAGGTCTGAGAAT+TGG | - | chr1_2:9204737-9204756 | Msa0054470:intron | 45.0% | |
| ACAAGCAATGCACTTCAGTG+TGG | - | chr1_2:9204838-9204857 | Msa0054470:intron | 45.0% | |
| TCTTGACAAATGGTCCACCA+TGG | - | chr1_2:9204322-9204341 | Msa0054470:intron | 45.0% | |
| CACAGGTGTATCCAAAGTCA+TGG | - | chr1_2:9204677-9204696 | Msa0054470:intron | 45.0% | |
| TACTGTGCAGTCCATGACTT+TGG | + | chr1_2:9204691-9204710 | None:intergenic | 45.0% | |
| ATGTGGGAATGTGGAATGTG+AGG | - | chr1_2:9204725-9204744 | Msa0054470:intron | 45.0% | |
| GGAATGTGAGGTCTGAGAAT+TGG | - | chr1_2:9204737-9204756 | Msa0054470:intron | 45.0% | |
| ACAAGCAATGCACTTCAGTG+TGG | - | chr1_2:9204838-9204857 | Msa0054470:intron | 45.0% | |
| !!! | TTTTTTTTTTATAAATTTGT+TGG | - | chr1_2:9204148-9204167 | Msa0054470:CDS | 5.0% |
| !!! | TTTTTTTTTTATAAATTTGT+TGG | - | chr1_2:9204148-9204167 | Msa0054470:CDS | 5.0% |
| GACTGCACAGTACATGCCAT+TGG | - | chr1_2:9204699-9204718 | Msa0054470:intron | 50.0% | |
| CAATGCACTTCAGTGTGGCA+AGG | - | chr1_2:9204843-9204862 | Msa0054470:intron | 50.0% | |
| GACTGCACAGTACATGCCAT+TGG | - | chr1_2:9204699-9204718 | Msa0054470:intron | 50.0% | |
| CAATGCACTTCAGTGTGGCA+AGG | - | chr1_2:9204843-9204862 | Msa0054470:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 9204048 | 9204885 | 9204048 | ID=Msa0054470;Name=Msa0054470 |
| chr1_2 | mRNA | 9204048 | 9204885 | 9204048 | ID=Msa0054470-mRNA-1;Parent=Msa0054470;Name=Msa0054470-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|0.5|1|1|2|0|81 |
| chr1_2 | exon | 9204844 | 9204885 | 9204844 | ID=Msa0054470-mRNA-1:exon:3422;Parent=Msa0054470-mRNA-1 |
| chr1_2 | exon | 9204048 | 9204251 | 9204048 | ID=Msa0054470-mRNA-1:exon:3421;Parent=Msa0054470-mRNA-1 |
| chr1_2 | CDS | 9204844 | 9204885 | 9204844 | ID=Msa0054470-mRNA-1:cds;Parent=Msa0054470-mRNA-1 |
| chr1_2 | CDS | 9204048 | 9204251 | 9204048 | ID=Msa0054470-mRNA-1:cds;Parent=Msa0054470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
