Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146780 | PNX89724.1 | 85.714 | 70 | 10 | 0 | 12 | 81 | 24 | 93 | 9.85e-38 | 131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146780 | sp|Q00624|ASOL_BRANA | 58.730 | 63 | 26 | 0 | 12 | 74 | 478 | 540 | 6.39e-19 | 82.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146780 | A0A2K3MG30 | 85.714 | 70 | 10 | 0 | 12 | 81 | 24 | 93 | 4.71e-38 | 131 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054430 | Msa0146780 | 0.872964 | 2.121537e-67 | -8.615850e-47 |
| Msa0054470 | Msa0146780 | 0.879202 | 1.510460e-69 | -8.615850e-47 |
| Msa0146780 | Msa0822870 | 0.808578 | 2.890481e-50 | -8.615850e-47 |
| Msa0146780 | Msa0969260 | 0.808311 | 3.296600e-50 | -8.615850e-47 |
| Msa0146780 | Msa1438250 | 0.805430 | 1.340327e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146780 | MtrunA17_Chr4g0024861 | 88.732 | 71 | 8 | 0 | 11 | 81 | 468 | 538 | 8.58e-41 | 139 |
| Msa0146780 | MtrunA17_Chr4g0024641 | 91.045 | 67 | 6 | 0 | 15 | 81 | 891 | 957 | 2.23e-38 | 134 |
| Msa0146780 | MtrunA17_Chr4g0024641 | 89.552 | 67 | 7 | 0 | 11 | 77 | 391 | 457 | 1.33e-36 | 129 |
| Msa0146780 | MtrunA17_Chr4g0024641 | 93.651 | 63 | 4 | 0 | 15 | 77 | 457 | 519 | 4.32e-36 | 128 |
| Msa0146780 | MtrunA17_Chr4g0024641 | 93.651 | 63 | 4 | 0 | 15 | 77 | 519 | 581 | 4.32e-36 | 128 |
| Msa0146780 | MtrunA17_Chr4g0024641 | 93.651 | 63 | 4 | 0 | 15 | 77 | 581 | 643 | 4.32e-36 | 128 |
| Msa0146780 | MtrunA17_Chr4g0024641 | 93.651 | 63 | 4 | 0 | 15 | 77 | 643 | 705 | 4.32e-36 | 128 |
| Msa0146780 | MtrunA17_Chr4g0024641 | 93.651 | 63 | 4 | 0 | 15 | 77 | 705 | 767 | 4.32e-36 | 128 |
| Msa0146780 | MtrunA17_Chr4g0024641 | 93.651 | 63 | 4 | 0 | 15 | 77 | 829 | 891 | 4.32e-36 | 128 |
| Msa0146780 | MtrunA17_Chr4g0024641 | 92.063 | 63 | 5 | 0 | 15 | 77 | 767 | 829 | 4.19e-35 | 125 |
| Msa0146780 | MtrunA17_Chr2g0322441 | 85.294 | 68 | 10 | 0 | 12 | 79 | 472 | 539 | 3.33e-37 | 130 |
| Msa0146780 | MtrunA17_Chr4g0038671 | 75.714 | 70 | 17 | 0 | 11 | 80 | 470 | 539 | 8.20e-32 | 115 |
| Msa0146780 | MtrunA17_Chr1g0157341 | 71.429 | 70 | 20 | 0 | 11 | 80 | 470 | 539 | 1.15e-31 | 115 |
| Msa0146780 | MtrunA17_Chr4g0075071 | 75.385 | 65 | 16 | 0 | 12 | 76 | 473 | 537 | 2.65e-31 | 114 |
| Msa0146780 | MtrunA17_Chr3g0143671 | 65.217 | 69 | 24 | 0 | 12 | 80 | 472 | 540 | 7.30e-28 | 104 |
| Msa0146780 | MtrunA17_Chr8g0374271 | 59.420 | 69 | 28 | 0 | 12 | 80 | 472 | 540 | 2.26e-22 | 89.0 |
| Msa0146780 | MtrunA17_Chr5g0402831 | 57.971 | 69 | 29 | 0 | 12 | 80 | 469 | 537 | 1.06e-21 | 87.0 |
| Msa0146780 | MtrunA17_Chr4g0043251 | 52.381 | 63 | 30 | 0 | 12 | 74 | 476 | 538 | 1.07e-17 | 75.5 |
| Msa0146780 | MtrunA17_Chr4g0056511 | 47.692 | 65 | 34 | 0 | 11 | 75 | 487 | 551 | 2.09e-16 | 72.0 |
| Msa0146780 | MtrunA17_Chr8g0374261 | 50.769 | 65 | 32 | 0 | 12 | 76 | 470 | 534 | 3.12e-16 | 71.6 |
| Msa0146780 | MtrunA17_Chr3g0121161 | 49.206 | 63 | 32 | 0 | 12 | 74 | 515 | 577 | 3.85e-15 | 68.6 |
| Msa0146780 | MtrunA17_Chr3g0121151 | 49.206 | 63 | 32 | 0 | 12 | 74 | 515 | 577 | 4.00e-15 | 68.6 |
| Msa0146780 | MtrunA17_Chr3g0121171 | 49.206 | 63 | 32 | 0 | 12 | 74 | 475 | 537 | 5.16e-15 | 68.2 |
| Msa0146780 | MtrunA17_Chr3g0121171 | 49.206 | 63 | 32 | 0 | 12 | 74 | 1050 | 1112 | 5.16e-15 | 68.2 |
| Msa0146780 | MtrunA17_Chr3g0121171 | 49.206 | 63 | 32 | 0 | 12 | 74 | 1625 | 1687 | 5.16e-15 | 68.2 |
| Msa0146780 | MtrunA17_Chr3g0121171 | 49.206 | 63 | 32 | 0 | 12 | 74 | 2191 | 2253 | 5.16e-15 | 68.2 |
| Msa0146780 | MtrunA17_Chr4g0043261 | 49.206 | 63 | 32 | 0 | 12 | 74 | 470 | 532 | 5.66e-15 | 67.8 |
| Msa0146780 | MtrunA17_Chr3g0079321 | 46.032 | 63 | 34 | 0 | 12 | 74 | 490 | 552 | 3.04e-13 | 63.2 |
| Msa0146780 | MtrunA17_Chr1g0197301 | 44.444 | 63 | 35 | 0 | 12 | 74 | 268 | 330 | 5.49e-13 | 62.0 |
| Msa0146780 | MtrunA17_Chr7g0234061 | 42.857 | 63 | 35 | 1 | 12 | 74 | 488 | 549 | 6.66e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146780 | AT1G21850.1 | 69.565 | 69 | 21 | 0 | 12 | 80 | 469 | 537 | 4.88e-30 | 110 |
| Msa0146780 | AT4G22010.1 | 67.143 | 70 | 23 | 0 | 11 | 80 | 468 | 537 | 1.75e-29 | 109 |
| Msa0146780 | AT4G38420.1 | 69.014 | 71 | 22 | 0 | 11 | 81 | 477 | 547 | 4.54e-29 | 108 |
| Msa0146780 | AT1G76160.1 | 72.308 | 65 | 18 | 0 | 12 | 76 | 469 | 533 | 4.87e-29 | 108 |
| Msa0146780 | AT1G41830.1 | 66.667 | 69 | 23 | 0 | 12 | 80 | 470 | 538 | 1.80e-28 | 106 |
| Msa0146780 | AT1G21860.1 | 68.116 | 69 | 22 | 0 | 12 | 80 | 469 | 537 | 2.37e-28 | 106 |
| Msa0146780 | AT4G28090.1 | 69.697 | 66 | 20 | 0 | 11 | 76 | 472 | 537 | 1.47e-27 | 103 |
| Msa0146780 | AT3G13400.2 | 60.317 | 63 | 25 | 0 | 12 | 74 | 476 | 538 | 2.13e-21 | 86.7 |
| Msa0146780 | AT3G13400.1 | 60.317 | 63 | 25 | 0 | 12 | 74 | 476 | 538 | 2.13e-21 | 86.7 |
| Msa0146780 | AT1G55560.1 | 58.730 | 63 | 26 | 0 | 12 | 74 | 475 | 537 | 5.34e-20 | 82.8 |
| Msa0146780 | AT1G55570.1 | 57.143 | 63 | 27 | 0 | 12 | 74 | 479 | 541 | 7.38e-20 | 82.0 |
| Msa0146780 | AT3G13390.1 | 58.730 | 63 | 26 | 0 | 12 | 74 | 478 | 540 | 7.74e-20 | 82.0 |
| Msa0146780 | AT5G66920.1 | 53.623 | 69 | 32 | 0 | 12 | 80 | 477 | 545 | 1.24e-18 | 78.6 |
| Msa0146780 | AT2G23630.2 | 50.769 | 65 | 32 | 0 | 12 | 76 | 476 | 540 | 6.19e-16 | 71.2 |
| Msa0146780 | AT2G23630.1 | 50.769 | 65 | 32 | 0 | 12 | 76 | 471 | 535 | 6.43e-16 | 70.9 |
| Msa0146780 | AT4G37160.1 | 50.769 | 65 | 32 | 0 | 12 | 76 | 473 | 537 | 7.52e-16 | 70.9 |
| Msa0146780 | AT1G75790.1 | 45.070 | 71 | 33 | 1 | 12 | 76 | 474 | 544 | 7.58e-15 | 67.8 |
| Msa0146780 | AT4G25240.2 | 45.312 | 64 | 35 | 0 | 11 | 74 | 488 | 551 | 3.29e-14 | 66.2 |
| Msa0146780 | AT4G25240.1 | 45.312 | 64 | 35 | 0 | 11 | 74 | 488 | 551 | 3.29e-14 | 66.2 |
| Msa0146780 | AT5G51480.1 | 43.750 | 64 | 36 | 0 | 11 | 74 | 488 | 551 | 1.17e-13 | 64.7 |
| Msa0146780 | AT4G12420.1 | 42.188 | 64 | 37 | 0 | 11 | 74 | 485 | 548 | 2.70e-12 | 60.8 |
| Msa0146780 | AT4G12420.2 | 42.188 | 64 | 37 | 0 | 11 | 74 | 485 | 548 | 2.70e-12 | 60.8 |
| Msa0146780 | AT5G48450.1 | 41.538 | 65 | 37 | 1 | 12 | 75 | 480 | 544 | 6.66e-12 | 59.7 |
| Msa0146780 | AT5G48450.2 | 40.909 | 66 | 38 | 1 | 11 | 75 | 479 | 544 | 1.03e-11 | 58.9 |
Find 24 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTGGGCAAGACAGTATT+TGG | 0.172946 | 1_4:+6541409 | Msa0146780:CDS |
| TGAAGTGCATTGCTTGTAAT+AGG | 0.279583 | 1_4:-6541488 | None:intergenic |
| AATACACTCTAAGATAAAAT+TGG | 0.334224 | 1_4:-6541436 | None:intergenic |
| CTTGTACTTTGAAACCTTGA+AGG | 0.365098 | 1_4:+6540720 | Msa0146780:CDS |
| GTCCAGTCATTAAACCTTCA+AGG | 0.380201 | 1_4:-6540734 | None:intergenic |
| TCATCTCTCAATGAATTTGC+AGG | 0.381836 | 1_4:-6541461 | None:intergenic |
| GGAATGTGAGGTCTGAGAAT+TGG | 0.449805 | 1_4:+6541393 | Msa0146780:CDS |
| GAAGTGCATTGCTTGTAATA+GGG | 0.454722 | 1_4:-6541487 | None:intergenic |
| GAATGTGAGGTCTGAGAATT+GGG | 0.454791 | 1_4:+6541394 | Msa0146780:CDS |
| AATTGGGCAAGACAGTATTT+GGG | 0.467279 | 1_4:+6541410 | Msa0146780:CDS |
| TACTGTGCAGTCCATGACTT+TGG | 0.507467 | 1_4:-6541344 | None:intergenic |
| TTGCTACCAATTACTAATTG+TGG | 0.521580 | 1_4:-6541532 | None:intergenic |
| ACACTCTAAGATAAAATTGG+TGG | 0.562579 | 1_4:-6541433 | None:intergenic |
| GACTGCACAGTACATGCCAT+TGG | 0.563858 | 1_4:+6541355 | Msa0146780:CDS |
| GTACATGCCATTGGATAATG+TGG | 0.568290 | 1_4:+6541364 | Msa0146780:CDS |
| CACATTCCCACATTATCCAA+TGG | 0.568508 | 1_4:-6541371 | None:intergenic |
| CACAGGTGTATCCAAAGTCA+TGG | 0.577502 | 1_4:+6541333 | Msa0146780:intron |
| TCAAGGTTTCAAAGTACAAG+AGG | 0.580792 | 1_4:-6540717 | None:intergenic |
| ATGTGGGAATGTGGAATGTG+AGG | 0.600216 | 1_4:+6541381 | Msa0146780:CDS |
| CAATGCACTTCAGTGTGGCA+AGG | 0.617833 | 1_4:+6541499 | Msa0146780:CDS |
| TACATGCCATTGGATAATGT+GGG | 0.658434 | 1_4:+6541365 | Msa0146780:CDS |
| CATTGGATAATGTGGGAATG+TGG | 0.674160 | 1_4:+6541372 | Msa0146780:CDS |
| ATAAAATAAAATGAAAGACG+TGG | 0.692064 | 1_4:+6540690 | None:intergenic |
| ACAAGCAATGCACTTCAGTG+TGG | 0.696188 | 1_4:+6541494 | Msa0146780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTAAATTCTATAGA+TGG | + | chr1_4:6541018-6541037 | Msa0146780:intron | 10.0% |
| !!! | TTTTTTTTAAATTCTATAGA+TGG | + | chr1_4:6541018-6541037 | Msa0146780:intron | 10.0% |
| !!! | TGGACATTTATTTTGATAAA+AGG | + | chr1_4:6540752-6540771 | Msa0146780:intron | 20.0% |
| !!! | TTAGCTTTAAATGAATAACT+TGG | + | chr1_4:6540854-6540873 | Msa0146780:intron | 20.0% |
| !!! | TAGCTTTAAATGAATAACTT+GGG | + | chr1_4:6540855-6540874 | Msa0146780:intron | 20.0% |
| !!! | GAAGATACTAATAATCATTT+TGG | + | chr1_4:6541271-6541290 | Msa0146780:intron | 20.0% |
| !!! | AATACACTCTAAGATAAAAT+TGG | - | chr1_4:6541439-6541458 | None:intergenic | 20.0% |
| !!! | TGGACATTTATTTTGATAAA+AGG | + | chr1_4:6540752-6540771 | Msa0146780:intron | 20.0% |
| !!! | TTAGCTTTAAATGAATAACT+TGG | + | chr1_4:6540854-6540873 | Msa0146780:intron | 20.0% |
| !!! | TAGCTTTAAATGAATAACTT+GGG | + | chr1_4:6540855-6540874 | Msa0146780:intron | 20.0% |
| !!! | GAAGATACTAATAATCATTT+TGG | + | chr1_4:6541271-6541290 | Msa0146780:intron | 20.0% |
| !!! | AATACACTCTAAGATAAAAT+TGG | - | chr1_4:6541439-6541458 | None:intergenic | 20.0% |
| ! | GGACATTACATAATATATGT+TGG | - | chr1_4:6540903-6540922 | None:intergenic | 25.0% |
| ! | TAAATTTAACTCGATTGGTA+TGG | - | chr1_4:6540924-6540943 | None:intergenic | 25.0% |
| ! | TACCAATCGAGTTAAATTTA+TGG | + | chr1_4:6540924-6540943 | Msa0146780:intron | 25.0% |
| ! | ACCAATCGAGTTAAATTTAT+GGG | + | chr1_4:6540925-6540944 | Msa0146780:intron | 25.0% |
| ! | GGACATTACATAATATATGT+TGG | - | chr1_4:6540903-6540922 | None:intergenic | 25.0% |
| ! | TAAATTTAACTCGATTGGTA+TGG | - | chr1_4:6540924-6540943 | None:intergenic | 25.0% |
| ! | TACCAATCGAGTTAAATTTA+TGG | + | chr1_4:6540924-6540943 | Msa0146780:intron | 25.0% |
| ! | ACCAATCGAGTTAAATTTAT+GGG | + | chr1_4:6540925-6540944 | Msa0146780:intron | 25.0% |
| TCCCATAAATTTAACTCGAT+TGG | - | chr1_4:6540929-6540948 | None:intergenic | 30.0% | |
| GTATGAACTATCTTGACAAA+TGG | + | chr1_4:6540970-6540989 | Msa0146780:intron | 30.0% | |
| ! | AAAATTGAAGTACTAGTCCA+TGG | - | chr1_4:6541000-6541019 | None:intergenic | 30.0% |
| ! | TTTGGCCTTTAACATGATTA+AGG | + | chr1_4:6541289-6541308 | Msa0146780:intron | 30.0% |
| ! | TTGGCCTTTAACATGATTAA+GGG | + | chr1_4:6541290-6541309 | Msa0146780:intron | 30.0% |
| CAAACCCTTAATCATGTTAA+AGG | - | chr1_4:6541297-6541316 | None:intergenic | 30.0% | |
| GACTTTCATATTTCATACAC+AGG | + | chr1_4:6541316-6541335 | Msa0146780:intron | 30.0% | |
| !! | ACACTCTAAGATAAAATTGG+TGG | - | chr1_4:6541436-6541455 | None:intergenic | 30.0% |
| TCCCATAAATTTAACTCGAT+TGG | - | chr1_4:6540929-6540948 | None:intergenic | 30.0% | |
| GTATGAACTATCTTGACAAA+TGG | + | chr1_4:6540970-6540989 | Msa0146780:intron | 30.0% | |
| ! | AAAATTGAAGTACTAGTCCA+TGG | - | chr1_4:6541000-6541019 | None:intergenic | 30.0% |
| ! | TTTGGCCTTTAACATGATTA+AGG | + | chr1_4:6541289-6541308 | Msa0146780:intron | 30.0% |
| ! | TTGGCCTTTAACATGATTAA+GGG | + | chr1_4:6541290-6541309 | Msa0146780:intron | 30.0% |
| CAAACCCTTAATCATGTTAA+AGG | - | chr1_4:6541297-6541316 | None:intergenic | 30.0% | |
| GACTTTCATATTTCATACAC+AGG | + | chr1_4:6541316-6541335 | Msa0146780:intron | 30.0% | |
| !! | ACACTCTAAGATAAAATTGG+TGG | - | chr1_4:6541436-6541455 | None:intergenic | 30.0% |
| TCAAGGTTTCAAAGTACAAG+AGG | - | chr1_4:6540720-6540739 | None:intergenic | 35.0% | |
| !! | CTTGTACTTTGAAACCTTGA+AGG | + | chr1_4:6540720-6540739 | Msa0146780:CDS | 35.0% |
| AACCTTGAAGGTTTAATGAC+TGG | + | chr1_4:6540732-6540751 | Msa0146780:intron | 35.0% | |
| ! | CTCTTGATAGTAGATGTTAG+TGG | + | chr1_4:6541051-6541070 | Msa0146780:intron | 35.0% |
| TACATGCCATTGGATAATGT+GGG | + | chr1_4:6541365-6541384 | Msa0146780:CDS | 35.0% | |
| AATTGGGCAAGACAGTATTT+GGG | + | chr1_4:6541410-6541429 | Msa0146780:CDS | 35.0% | |
| TCATCTCTCAATGAATTTGC+AGG | - | chr1_4:6541464-6541483 | None:intergenic | 35.0% | |
| GAAGTGCATTGCTTGTAATA+GGG | - | chr1_4:6541490-6541509 | None:intergenic | 35.0% | |
| TGAAGTGCATTGCTTGTAAT+AGG | - | chr1_4:6541491-6541510 | None:intergenic | 35.0% | |
| TCAAGGTTTCAAAGTACAAG+AGG | - | chr1_4:6540720-6540739 | None:intergenic | 35.0% | |
| !! | CTTGTACTTTGAAACCTTGA+AGG | + | chr1_4:6540720-6540739 | Msa0146780:CDS | 35.0% |
| AACCTTGAAGGTTTAATGAC+TGG | + | chr1_4:6540732-6540751 | Msa0146780:intron | 35.0% | |
| ! | CTCTTGATAGTAGATGTTAG+TGG | + | chr1_4:6541051-6541070 | Msa0146780:intron | 35.0% |
| TACATGCCATTGGATAATGT+GGG | + | chr1_4:6541365-6541384 | Msa0146780:CDS | 35.0% | |
| AATTGGGCAAGACAGTATTT+GGG | + | chr1_4:6541410-6541429 | Msa0146780:CDS | 35.0% | |
| TCATCTCTCAATGAATTTGC+AGG | - | chr1_4:6541464-6541483 | None:intergenic | 35.0% | |
| GAAGTGCATTGCTTGTAATA+GGG | - | chr1_4:6541490-6541509 | None:intergenic | 35.0% | |
| TGAAGTGCATTGCTTGTAAT+AGG | - | chr1_4:6541491-6541510 | None:intergenic | 35.0% | |
| GTCCAGTCATTAAACCTTCA+AGG | - | chr1_4:6540737-6540756 | None:intergenic | 40.0% | |
| ! | ATTGAAGTACTAGTCCATGG+TGG | - | chr1_4:6540997-6541016 | None:intergenic | 40.0% |
| GTACATGCCATTGGATAATG+TGG | + | chr1_4:6541364-6541383 | Msa0146780:CDS | 40.0% | |
| CACATTCCCACATTATCCAA+TGG | - | chr1_4:6541374-6541393 | None:intergenic | 40.0% | |
| CATTGGATAATGTGGGAATG+TGG | + | chr1_4:6541372-6541391 | Msa0146780:CDS | 40.0% | |
| GAATGTGAGGTCTGAGAATT+GGG | + | chr1_4:6541394-6541413 | Msa0146780:CDS | 40.0% | |
| GAATTGGGCAAGACAGTATT+TGG | + | chr1_4:6541409-6541428 | Msa0146780:CDS | 40.0% | |
| GTCCAGTCATTAAACCTTCA+AGG | - | chr1_4:6540737-6540756 | None:intergenic | 40.0% | |
| ! | ATTGAAGTACTAGTCCATGG+TGG | - | chr1_4:6540997-6541016 | None:intergenic | 40.0% |
| GTACATGCCATTGGATAATG+TGG | + | chr1_4:6541364-6541383 | Msa0146780:CDS | 40.0% | |
| CACATTCCCACATTATCCAA+TGG | - | chr1_4:6541374-6541393 | None:intergenic | 40.0% | |
| CATTGGATAATGTGGGAATG+TGG | + | chr1_4:6541372-6541391 | Msa0146780:CDS | 40.0% | |
| GAATGTGAGGTCTGAGAATT+GGG | + | chr1_4:6541394-6541413 | Msa0146780:CDS | 40.0% | |
| GAATTGGGCAAGACAGTATT+TGG | + | chr1_4:6541409-6541428 | Msa0146780:CDS | 40.0% | |
| TCTTGACAAATGGTCCACCA+TGG | + | chr1_4:6540980-6540999 | Msa0146780:intron | 45.0% | |
| CACAGGTGTATCCAAAGTCA+TGG | + | chr1_4:6541333-6541352 | Msa0146780:intron | 45.0% | |
| TACTGTGCAGTCCATGACTT+TGG | - | chr1_4:6541347-6541366 | None:intergenic | 45.0% | |
| ATGTGGGAATGTGGAATGTG+AGG | + | chr1_4:6541381-6541400 | Msa0146780:CDS | 45.0% | |
| GGAATGTGAGGTCTGAGAAT+TGG | + | chr1_4:6541393-6541412 | Msa0146780:CDS | 45.0% | |
| ACAAGCAATGCACTTCAGTG+TGG | + | chr1_4:6541494-6541513 | Msa0146780:CDS | 45.0% | |
| TCTTGACAAATGGTCCACCA+TGG | + | chr1_4:6540980-6540999 | Msa0146780:intron | 45.0% | |
| CACAGGTGTATCCAAAGTCA+TGG | + | chr1_4:6541333-6541352 | Msa0146780:intron | 45.0% | |
| TACTGTGCAGTCCATGACTT+TGG | - | chr1_4:6541347-6541366 | None:intergenic | 45.0% | |
| ATGTGGGAATGTGGAATGTG+AGG | + | chr1_4:6541381-6541400 | Msa0146780:CDS | 45.0% | |
| GGAATGTGAGGTCTGAGAAT+TGG | + | chr1_4:6541393-6541412 | Msa0146780:CDS | 45.0% | |
| ACAAGCAATGCACTTCAGTG+TGG | + | chr1_4:6541494-6541513 | Msa0146780:CDS | 45.0% | |
| !!! | TTTATTTTTAATAAATTTGT+TGG | + | chr1_4:6540801-6540820 | Msa0146780:intron | 5.0% |
| !!! | TTTATTTTTAATAAATTTGT+TGG | + | chr1_4:6540801-6540820 | Msa0146780:intron | 5.0% |
| GACTGCACAGTACATGCCAT+TGG | + | chr1_4:6541355-6541374 | Msa0146780:CDS | 50.0% | |
| CAATGCACTTCAGTGTGGCA+AGG | + | chr1_4:6541499-6541518 | Msa0146780:CDS | 50.0% | |
| GACTGCACAGTACATGCCAT+TGG | + | chr1_4:6541355-6541374 | Msa0146780:CDS | 50.0% | |
| CAATGCACTTCAGTGTGGCA+AGG | + | chr1_4:6541499-6541518 | Msa0146780:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 6540700 | 6541541 | 6540700 | ID=Msa0146780;Name=Msa0146780 |
| chr1_4 | mRNA | 6540700 | 6541541 | 6540700 | ID=Msa0146780-mRNA-1;Parent=Msa0146780;Name=Msa0146780-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|0.5|1|1|2|0|81 |
| chr1_4 | exon | 6540700 | 6540741 | 6540700 | ID=Msa0146780-mRNA-1:exon:2829;Parent=Msa0146780-mRNA-1 |
| chr1_4 | exon | 6541338 | 6541541 | 6541338 | ID=Msa0146780-mRNA-1:exon:2830;Parent=Msa0146780-mRNA-1 |
| chr1_4 | CDS | 6540700 | 6540741 | 6540700 | ID=Msa0146780-mRNA-1:cds;Parent=Msa0146780-mRNA-1 |
| chr1_4 | CDS | 6541338 | 6541541 | 6541338 | ID=Msa0146780-mRNA-1:cds;Parent=Msa0146780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
