AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0056670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0056670 MtrunA17_Chr4g0052601 47.297 74 38 1 65 137 298 371 3.30e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 48 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGATGCTTGTTCTTTATT+TGG 0.183079 1_2:-12307095 Msa0056670:three_prime_UTR
CATCATTATATTCCTCAAAA+AGG 0.217920 1_2:+12307666 None:intergenic
AGAAAGATAAATTGCTTAAA+AGG 0.227245 1_2:+12307037 None:intergenic
CTGTTCCTGATGATTGATTA+AGG 0.263570 1_2:-12307114 Msa0056670:exon
ACAAAGTTGGATATATAAAT+TGG 0.273647 1_2:-12307760 Msa0056670:CDS
TGCACACATGATTGGCTATA+TGG 0.290733 1_2:-12307302 Msa0056670:CDS
GTTGCGTTCAAACAAGGATT+TGG 0.301184 1_2:-12307267 Msa0056670:CDS
CGAAACTCATTCCAACTATA+AGG 0.319764 1_2:+12307581 None:intergenic
TGACTTTATTGAAGAGAATC+AGG 0.331103 1_2:-12309043 Msa0056670:CDS
ACATCTTAACAAGTTCATTC+TGG 0.335369 1_2:+12308866 None:intergenic
GTATCATCGGCTCGCTTTGT+TGG 0.389838 1_2:-12308985 Msa0056670:CDS
TATCATCGGCTCGCTTTGTT+GGG 0.392928 1_2:-12308984 Msa0056670:CDS
AGAATCACTGTATTAATTCA+AGG 0.394977 1_2:-12307067 Msa0056670:three_prime_UTR
TCATCTCCTTCTATATTGTC+TGG 0.409357 1_2:-12308256 Msa0056670:CDS
CGCTTGTCTGCACACATGAT+TGG 0.415433 1_2:-12307310 Msa0056670:CDS
TCAAATCCAGACAATATAGA+AGG 0.422190 1_2:+12308250 None:intergenic
TCTCTTCAATAAAGTCATCT+TGG 0.424426 1_2:+12309049 None:intergenic
CTTGTTTGAACGCAACGAAA+AGG 0.433601 1_2:+12307274 None:intergenic
ATAGAGATCGGTCAGATGAT+TGG 0.447056 1_2:-12308960 Msa0056670:CDS
TAGAGATCGGTCAGATGATT+GGG 0.457439 1_2:-12308959 Msa0056670:CDS
AAAGCATCAAAGGGCATTTG+AGG 0.459348 1_2:-12308128 Msa0056670:CDS
AGCATCCTTAATCAATCATC+AGG 0.462149 1_2:+12307109 None:intergenic
GAATTTGTCATATGAGATGT+TGG 0.477507 1_2:-12308161 Msa0056670:CDS
TTGTTTGAACGCAACGAAAA+GGG 0.479809 1_2:+12307275 None:intergenic
GTTCATTCTGGCAAGCCTCT+TGG 0.483141 1_2:+12308878 None:intergenic
GTAAAGAGGATCCTTATAGT+TGG 0.505450 1_2:-12307592 Msa0056670:CDS
TTTGATCCTAGGTACAAAGT+TGG 0.507835 1_2:-12307773 Msa0056670:intron
AAGTCATCTTGGTCACTCAT+TGG 0.513648 1_2:+12309060 None:intergenic
AGGCTGCTTTAAAGCATCAA+AGG 0.529819 1_2:-12308138 Msa0056670:CDS
TTGAACATGTAATATCTAGT+TGG 0.531858 1_2:+12307143 None:intergenic
AAAGCACAATTTGATGAAGA+AGG 0.531971 1_2:-12307614 Msa0056670:CDS
GCTTTGTTGGGCATAGAGAT+CGG 0.532380 1_2:-12308972 Msa0056670:CDS
GGCTGCTTTAAAGCATCAAA+GGG 0.533188 1_2:-12308137 Msa0056670:CDS
GTATTGTTAGAGCCAAGTGC+TGG 0.534057 1_2:+12309012 None:intergenic
CAGGTTGCTACTCCAGCACT+TGG 0.535820 1_2:-12309024 Msa0056670:CDS
TAACAATACTAGTGTATCAT+CGG 0.549701 1_2:-12308998 Msa0056670:CDS
TCAATCATCAGGAACAGTAA+AGG 0.554250 1_2:+12307120 None:intergenic
AGCAAAGTGATGGAAGCAAA+AGG 0.557939 1_2:-12308921 Msa0056670:CDS
ATTTGATGAAGAAGGTAAAG+AGG 0.563809 1_2:-12307606 Msa0056670:CDS
ATTTGACAAGTTTGACCAAG+AGG 0.565281 1_2:-12308893 Msa0056670:CDS
TTTACTGAAGAGCAAAGTGA+TGG 0.596882 1_2:-12308931 Msa0056670:CDS
AGGCAGCTAATTTGAAACAG+AGG 0.598299 1_2:-12307709 Msa0056670:CDS
GTGATGCAGTTCAATATACA+AGG 0.610197 1_2:-12308279 Msa0056670:CDS
GATTTGGAAAAGCTTAAGCA+AGG 0.625887 1_2:-12307251 Msa0056670:intron
TTTGTCATATGAGATGTTGG+AGG 0.654353 1_2:-12308158 Msa0056670:CDS
ACATGGATATTGAAACTAGG+TGG 0.662631 1_2:-12308183 Msa0056670:CDS
TTCACATGGATATTGAAACT+AGG 0.666709 1_2:-12308186 Msa0056670:CDS
AAGTGAAGGATATGTTCACA+TGG 0.671691 1_2:-12308200 Msa0056670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTAATATATATATGTTAG+AGG - chr1_2:12308134-12308153 Msa0056670:CDS 15.0%
!! TAGTAATATATATATGTTAG+AGG - chr1_2:12308134-12308153 Msa0056670:CDS 15.0%
!! AGAATTTCAAAAGTTTCTAA+AGG - chr1_2:12307282-12307301 Msa0056670:CDS 20.0%
!!! TCATGATATTTTAACTCTAT+GGG - chr1_2:12307354-12307373 Msa0056670:intron 20.0%
!!! TATTTTGAACATGATATTGA+AGG - chr1_2:12307744-12307763 Msa0056670:CDS 20.0%
!!! ATATATATGTTAGAGGTATT+TGG - chr1_2:12308141-12308160 Msa0056670:CDS 20.0%
!! ACAAAGTTGGATATATAAAT+TGG - chr1_2:12308325-12308344 Msa0056670:intron 20.0%
!! ATCATTATATTCCTCAAAAA+GGG + chr1_2:12308421-12308440 None:intergenic 20.0%
!! AGAAAGATAAATTGCTTAAA+AGG + chr1_2:12309051-12309070 None:intergenic 20.0%
!! AGAATTTCAAAAGTTTCTAA+AGG - chr1_2:12307282-12307301 Msa0056670:CDS 20.0%
!!! TCATGATATTTTAACTCTAT+GGG - chr1_2:12307354-12307373 Msa0056670:intron 20.0%
!!! TATTTTGAACATGATATTGA+AGG - chr1_2:12307744-12307763 Msa0056670:CDS 20.0%
!!! ATATATATGTTAGAGGTATT+TGG - chr1_2:12308141-12308160 Msa0056670:CDS 20.0%
!! ACAAAGTTGGATATATAAAT+TGG - chr1_2:12308325-12308344 Msa0056670:intron 20.0%
!! ATCATTATATTCCTCAAAAA+GGG + chr1_2:12308421-12308440 None:intergenic 20.0%
!! AGAAAGATAAATTGCTTAAA+AGG + chr1_2:12309051-12309070 None:intergenic 20.0%
! TAACAATACTAGTGTATCAT+CGG - chr1_2:12307087-12307106 Msa0056670:three_prime_UTR 25.0%
! TACAAATGAAATAGGAATGT+CGG + chr1_2:12307254-12307273 None:intergenic 25.0%
! TCATTCTCTACAAATGAAAT+AGG + chr1_2:12307262-12307281 None:intergenic 25.0%
!!! CTCATGATATTTTAACTCTA+TGG - chr1_2:12307353-12307372 Msa0056670:intron 25.0%
! CCAGTTATTATCAATAAAGT+GGG + chr1_2:12307491-12307510 None:intergenic 25.0%
! TCCAGTTATTATCAATAAAG+TGG + chr1_2:12307492-12307511 None:intergenic 25.0%
! CAAGAAAAAATTGAAAGTGA+AGG - chr1_2:12307871-12307890 Msa0056670:intron 25.0%
! TCATGAAAGATCTTCAAAAA+TGG + chr1_2:12308078-12308097 None:intergenic 25.0%
! TATATTACTAGTAGCATTAG+AGG + chr1_2:12308124-12308143 None:intergenic 25.0%
! ACTGTATAGCTATAATGATA+AGG - chr1_2:12308214-12308233 Msa0056670:CDS 25.0%
!!! TCAGATTTTTAATTCAGTTG+AGG - chr1_2:12308356-12308375 Msa0056670:intron 25.0%
! CATCATTATATTCCTCAAAA+AGG + chr1_2:12308422-12308441 None:intergenic 25.0%
!!! CTTTTTGAGGAATATAATGA+TGG - chr1_2:12308420-12308439 Msa0056670:intron 25.0%
! ATCTGAGCTAAATAAGTATT+TGG - chr1_2:12308551-12308570 Msa0056670:intron 25.0%
! AGGATTTGGATATCTTAAAT+TGG - chr1_2:12308595-12308614 Msa0056670:intron 25.0%
! ATTTGGATATCTTAAATTGG+TGG - chr1_2:12308598-12308617 Msa0056670:intron 25.0%
!! AGAAAACATGATGCTTATTT+TGG - chr1_2:12308859-12308878 Msa0056670:intron 25.0%
! TTGAACATGTAATATCTAGT+TGG + chr1_2:12308945-12308964 None:intergenic 25.0%
! AGAATCACTGTATTAATTCA+AGG - chr1_2:12309018-12309037 Msa0056670:CDS 25.0%
! TAACAATACTAGTGTATCAT+CGG - chr1_2:12307087-12307106 Msa0056670:three_prime_UTR 25.0%
! TACAAATGAAATAGGAATGT+CGG + chr1_2:12307254-12307273 None:intergenic 25.0%
! TCATTCTCTACAAATGAAAT+AGG + chr1_2:12307262-12307281 None:intergenic 25.0%
!!! CTCATGATATTTTAACTCTA+TGG - chr1_2:12307353-12307372 Msa0056670:intron 25.0%
! CCAGTTATTATCAATAAAGT+GGG + chr1_2:12307491-12307510 None:intergenic 25.0%
! TCCAGTTATTATCAATAAAG+TGG + chr1_2:12307492-12307511 None:intergenic 25.0%
! CAAGAAAAAATTGAAAGTGA+AGG - chr1_2:12307871-12307890 Msa0056670:intron 25.0%
! TCATGAAAGATCTTCAAAAA+TGG + chr1_2:12308078-12308097 None:intergenic 25.0%
! TATATTACTAGTAGCATTAG+AGG + chr1_2:12308124-12308143 None:intergenic 25.0%
! ACTGTATAGCTATAATGATA+AGG - chr1_2:12308214-12308233 Msa0056670:CDS 25.0%
!!! TCAGATTTTTAATTCAGTTG+AGG - chr1_2:12308356-12308375 Msa0056670:intron 25.0%
! CATCATTATATTCCTCAAAA+AGG + chr1_2:12308422-12308441 None:intergenic 25.0%
!!! CTTTTTGAGGAATATAATGA+TGG - chr1_2:12308420-12308439 Msa0056670:intron 25.0%
! ATCTGAGCTAAATAAGTATT+TGG - chr1_2:12308551-12308570 Msa0056670:intron 25.0%
! AGGATTTGGATATCTTAAAT+TGG - chr1_2:12308595-12308614 Msa0056670:intron 25.0%
! ATTTGGATATCTTAAATTGG+TGG - chr1_2:12308598-12308617 Msa0056670:intron 25.0%
!! AGAAAACATGATGCTTATTT+TGG - chr1_2:12308859-12308878 Msa0056670:intron 25.0%
! TTGAACATGTAATATCTAGT+TGG + chr1_2:12308945-12308964 None:intergenic 25.0%
! AGAATCACTGTATTAATTCA+AGG - chr1_2:12309018-12309037 Msa0056670:CDS 25.0%
TCTCTTCAATAAAGTCATCT+TGG + chr1_2:12307039-12307058 None:intergenic 30.0%
TGACTTTATTGAAGAGAATC+AGG - chr1_2:12307042-12307061 Msa0056670:three_prime_UTR 30.0%
ACATCTTAACAAGTTCATTC+TGG + chr1_2:12307222-12307241 None:intergenic 30.0%
AGTGAGGAAACACTAAATTT+CGG + chr1_2:12307316-12307335 None:intergenic 30.0%
! CCCACTTTATTGATAATAAC+TGG - chr1_2:12307488-12307507 Msa0056670:intron 30.0%
TCACTAGAGTATATGGAATA+TGG - chr1_2:12307556-12307575 Msa0056670:CDS 30.0%
! ATATGGAATATGGTATTGAG+TGG - chr1_2:12307566-12307585 Msa0056670:CDS 30.0%
TTATGAGATTCGATGCTTAA+AGG - chr1_2:12307654-12307673 Msa0056670:CDS 30.0%
TTTGAACATGATATTGAAGG+AGG - chr1_2:12307747-12307766 Msa0056670:CDS 30.0%
TCAAATCCAGACAATATAGA+AGG + chr1_2:12307838-12307857 None:intergenic 30.0%
TTCACATGGATATTGAAACT+AGG - chr1_2:12307899-12307918 Msa0056670:intron 30.0%
GAATTTGTCATATGAGATGT+TGG - chr1_2:12307924-12307943 Msa0056670:intron 30.0%
! ACTTTTTGTCATGTAACTCA+AGG + chr1_2:12307984-12308003 None:intergenic 30.0%
TATGTTCACGAGTTAGAAAA+GGG - chr1_2:12308003-12308022 Msa0056670:intron 30.0%
!! ATGTTAGAGGTATTTGGAAT+TGG - chr1_2:12308147-12308166 Msa0056670:CDS 30.0%
GTATAGCTATAATGATAAGG+AGG - chr1_2:12308217-12308236 Msa0056670:CDS 30.0%
! TATAATCAGCATTGGGAAAA+TGG - chr1_2:12308243-12308262 Msa0056670:CDS 30.0%
! ATAATCAGCATTGGGAAAAT+GGG - chr1_2:12308244-12308263 Msa0056670:CDS 30.0%
ATATATCCAACTTTGTACCT+AGG + chr1_2:12308321-12308340 None:intergenic 30.0%
!! TTGTTTGAAATCCCTTTTTG+AGG - chr1_2:12308407-12308426 Msa0056670:intron 30.0%
AAAGCACAATTTGATGAAGA+AGG - chr1_2:12308471-12308490 Msa0056670:intron 30.0%
ATTTGATGAAGAAGGTAAAG+AGG - chr1_2:12308479-12308498 Msa0056670:intron 30.0%
TGAGCTAAATAAGTATTTGG+AGG - chr1_2:12308554-12308573 Msa0056670:intron 30.0%
!!! CATGATGCTTATTTTGGAAA+AGG - chr1_2:12308865-12308884 Msa0056670:intron 30.0%
! TTTTTGTCTTTGTGCAGAAA+TGG - chr1_2:12308915-12308934 Msa0056670:CDS 30.0%
AAGGATGCTTGTTCTTTATT+TGG - chr1_2:12308990-12309009 Msa0056670:CDS 30.0%
TCTCTTCAATAAAGTCATCT+TGG + chr1_2:12307039-12307058 None:intergenic 30.0%
TGACTTTATTGAAGAGAATC+AGG - chr1_2:12307042-12307061 Msa0056670:three_prime_UTR 30.0%
ACATCTTAACAAGTTCATTC+TGG + chr1_2:12307222-12307241 None:intergenic 30.0%
AGTGAGGAAACACTAAATTT+CGG + chr1_2:12307316-12307335 None:intergenic 30.0%
! CCCACTTTATTGATAATAAC+TGG - chr1_2:12307488-12307507 Msa0056670:intron 30.0%
TCACTAGAGTATATGGAATA+TGG - chr1_2:12307556-12307575 Msa0056670:CDS 30.0%
! ATATGGAATATGGTATTGAG+TGG - chr1_2:12307566-12307585 Msa0056670:CDS 30.0%
TTATGAGATTCGATGCTTAA+AGG - chr1_2:12307654-12307673 Msa0056670:CDS 30.0%
TTTGAACATGATATTGAAGG+AGG - chr1_2:12307747-12307766 Msa0056670:CDS 30.0%
TCAAATCCAGACAATATAGA+AGG + chr1_2:12307838-12307857 None:intergenic 30.0%
TTCACATGGATATTGAAACT+AGG - chr1_2:12307899-12307918 Msa0056670:intron 30.0%
GAATTTGTCATATGAGATGT+TGG - chr1_2:12307924-12307943 Msa0056670:intron 30.0%
! ACTTTTTGTCATGTAACTCA+AGG + chr1_2:12307984-12308003 None:intergenic 30.0%
TATGTTCACGAGTTAGAAAA+GGG - chr1_2:12308003-12308022 Msa0056670:intron 30.0%
!! ATGTTAGAGGTATTTGGAAT+TGG - chr1_2:12308147-12308166 Msa0056670:CDS 30.0%
GTATAGCTATAATGATAAGG+AGG - chr1_2:12308217-12308236 Msa0056670:CDS 30.0%
! TATAATCAGCATTGGGAAAA+TGG - chr1_2:12308243-12308262 Msa0056670:CDS 30.0%
! ATAATCAGCATTGGGAAAAT+GGG - chr1_2:12308244-12308263 Msa0056670:CDS 30.0%
ATATATCCAACTTTGTACCT+AGG + chr1_2:12308321-12308340 None:intergenic 30.0%
!! TTGTTTGAAATCCCTTTTTG+AGG - chr1_2:12308407-12308426 Msa0056670:intron 30.0%
AAAGCACAATTTGATGAAGA+AGG - chr1_2:12308471-12308490 Msa0056670:intron 30.0%
ATTTGATGAAGAAGGTAAAG+AGG - chr1_2:12308479-12308498 Msa0056670:intron 30.0%
TGAGCTAAATAAGTATTTGG+AGG - chr1_2:12308554-12308573 Msa0056670:intron 30.0%
!!! CATGATGCTTATTTTGGAAA+AGG - chr1_2:12308865-12308884 Msa0056670:intron 30.0%
! TTTTTGTCTTTGTGCAGAAA+TGG - chr1_2:12308915-12308934 Msa0056670:CDS 30.0%
AAGGATGCTTGTTCTTTATT+TGG - chr1_2:12308990-12309009 Msa0056670:CDS 30.0%
TTTACTGAAGAGCAAAGTGA+TGG - chr1_2:12307154-12307173 Msa0056670:CDS 35.0%
ATTTGACAAGTTTGACCAAG+AGG - chr1_2:12307192-12307211 Msa0056670:intron 35.0%
AAATGAAATAGGAATGTCGG+TGG + chr1_2:12307251-12307270 None:intergenic 35.0%
GTTAGACTAAAAATGCGACT+CGG + chr1_2:12307610-12307629 None:intergenic 35.0%
CGAATCTCATAATCATATCG+AGG + chr1_2:12307646-12307665 None:intergenic 35.0%
AAAGGAAAAGTTAATGACCC+TGG - chr1_2:12307672-12307691 Msa0056670:CDS 35.0%
GTAATCTCCTTTCAAAACGA+AGG + chr1_2:12307701-12307720 None:intergenic 35.0%
TGTTCAAAATATGAGCGCAA+GGG + chr1_2:12307735-12307754 None:intergenic 35.0%
ATGTTCAAAATATGAGCGCA+AGG + chr1_2:12307736-12307755 None:intergenic 35.0%
GTGATGCAGTTCAATATACA+AGG - chr1_2:12307806-12307825 Msa0056670:intron 35.0%
TCATCTCCTTCTATATTGTC+TGG - chr1_2:12307829-12307848 Msa0056670:intron 35.0%
AAGTGAAGGATATGTTCACA+TGG - chr1_2:12307885-12307904 Msa0056670:intron 35.0%
ACATGGATATTGAAACTAGG+TGG - chr1_2:12307902-12307921 Msa0056670:intron 35.0%
TTTGTCATATGAGATGTTGG+AGG - chr1_2:12307927-12307946 Msa0056670:intron 35.0%
GTATGTTCACGAGTTAGAAA+AGG - chr1_2:12308002-12308021 Msa0056670:intron 35.0%
ATGTTCACGAGTTAGAAAAG+GGG - chr1_2:12308004-12308023 Msa0056670:intron 35.0%
GTGTTCCTACATATGAAGAT+TGG - chr1_2:12308031-12308050 Msa0056670:intron 35.0%
TGGTTCCAATCTTCATATGT+AGG + chr1_2:12308039-12308058 None:intergenic 35.0%
TACATATGAAGATTGGAACC+AGG - chr1_2:12308038-12308057 Msa0056670:intron 35.0%
ATGGTAACATTAAGTAAGCC+TGG + chr1_2:12308059-12308078 None:intergenic 35.0%
TAGCTATACAGTGTACATTC+AGG + chr1_2:12308206-12308225 None:intergenic 35.0%
! GAGGTACTATAATCAGCATT+GGG - chr1_2:12308236-12308255 Msa0056670:CDS 35.0%
! TAATCAGCATTGGGAAAATG+GGG - chr1_2:12308245-12308264 Msa0056670:CDS 35.0%
TTGCTCTTGTATTTGATCCT+AGG - chr1_2:12308301-12308320 Msa0056670:intron 35.0%
TTTGATCCTAGGTACAAAGT+TGG - chr1_2:12308312-12308331 Msa0056670:intron 35.0%
GTAAAGAGGATCCTTATAGT+TGG - chr1_2:12308493-12308512 Msa0056670:intron 35.0%
CGAAACTCATTCCAACTATA+AGG + chr1_2:12308507-12308526 None:intergenic 35.0%
TAAGATATCCAAATCCTCAG+AGG + chr1_2:12308592-12308611 None:intergenic 35.0%
! TGCACTTGGTAATAATGCAA+AGG - chr1_2:12308707-12308726 Msa0056670:intron 35.0%
TTGTTTGAACGCAACGAAAA+GGG + chr1_2:12308813-12308832 None:intergenic 35.0%
GATTTGGAAAAGCTTAAGCA+AGG - chr1_2:12308834-12308853 Msa0056670:intron 35.0%
TCAATCATCAGGAACAGTAA+AGG + chr1_2:12308968-12308987 None:intergenic 35.0%
CTGTTCCTGATGATTGATTA+AGG - chr1_2:12308971-12308990 Msa0056670:CDS 35.0%
AGCATCCTTAATCAATCATC+AGG + chr1_2:12308979-12308998 None:intergenic 35.0%
TTTACTGAAGAGCAAAGTGA+TGG - chr1_2:12307154-12307173 Msa0056670:CDS 35.0%
ATTTGACAAGTTTGACCAAG+AGG - chr1_2:12307192-12307211 Msa0056670:intron 35.0%
AAATGAAATAGGAATGTCGG+TGG + chr1_2:12307251-12307270 None:intergenic 35.0%
GTTAGACTAAAAATGCGACT+CGG + chr1_2:12307610-12307629 None:intergenic 35.0%
CGAATCTCATAATCATATCG+AGG + chr1_2:12307646-12307665 None:intergenic 35.0%
AAAGGAAAAGTTAATGACCC+TGG - chr1_2:12307672-12307691 Msa0056670:CDS 35.0%
GTAATCTCCTTTCAAAACGA+AGG + chr1_2:12307701-12307720 None:intergenic 35.0%
TGTTCAAAATATGAGCGCAA+GGG + chr1_2:12307735-12307754 None:intergenic 35.0%
ATGTTCAAAATATGAGCGCA+AGG + chr1_2:12307736-12307755 None:intergenic 35.0%
GTGATGCAGTTCAATATACA+AGG - chr1_2:12307806-12307825 Msa0056670:intron 35.0%
TCATCTCCTTCTATATTGTC+TGG - chr1_2:12307829-12307848 Msa0056670:intron 35.0%
AAGTGAAGGATATGTTCACA+TGG - chr1_2:12307885-12307904 Msa0056670:intron 35.0%
ACATGGATATTGAAACTAGG+TGG - chr1_2:12307902-12307921 Msa0056670:intron 35.0%
TTTGTCATATGAGATGTTGG+AGG - chr1_2:12307927-12307946 Msa0056670:intron 35.0%
GTATGTTCACGAGTTAGAAA+AGG - chr1_2:12308002-12308021 Msa0056670:intron 35.0%
ATGTTCACGAGTTAGAAAAG+GGG - chr1_2:12308004-12308023 Msa0056670:intron 35.0%
GTGTTCCTACATATGAAGAT+TGG - chr1_2:12308031-12308050 Msa0056670:intron 35.0%
TGGTTCCAATCTTCATATGT+AGG + chr1_2:12308039-12308058 None:intergenic 35.0%
TACATATGAAGATTGGAACC+AGG - chr1_2:12308038-12308057 Msa0056670:intron 35.0%
ATGGTAACATTAAGTAAGCC+TGG + chr1_2:12308059-12308078 None:intergenic 35.0%
TAGCTATACAGTGTACATTC+AGG + chr1_2:12308206-12308225 None:intergenic 35.0%
! GAGGTACTATAATCAGCATT+GGG - chr1_2:12308236-12308255 Msa0056670:CDS 35.0%
! TAATCAGCATTGGGAAAATG+GGG - chr1_2:12308245-12308264 Msa0056670:CDS 35.0%
TTGCTCTTGTATTTGATCCT+AGG - chr1_2:12308301-12308320 Msa0056670:intron 35.0%
TTTGATCCTAGGTACAAAGT+TGG - chr1_2:12308312-12308331 Msa0056670:intron 35.0%
GTAAAGAGGATCCTTATAGT+TGG - chr1_2:12308493-12308512 Msa0056670:intron 35.0%
CGAAACTCATTCCAACTATA+AGG + chr1_2:12308507-12308526 None:intergenic 35.0%
TAAGATATCCAAATCCTCAG+AGG + chr1_2:12308592-12308611 None:intergenic 35.0%
! TGCACTTGGTAATAATGCAA+AGG - chr1_2:12308707-12308726 Msa0056670:intron 35.0%
TTGTTTGAACGCAACGAAAA+GGG + chr1_2:12308813-12308832 None:intergenic 35.0%
GATTTGGAAAAGCTTAAGCA+AGG - chr1_2:12308834-12308853 Msa0056670:intron 35.0%
TCAATCATCAGGAACAGTAA+AGG + chr1_2:12308968-12308987 None:intergenic 35.0%
CTGTTCCTGATGATTGATTA+AGG - chr1_2:12308971-12308990 Msa0056670:CDS 35.0%
AGCATCCTTAATCAATCATC+AGG + chr1_2:12308979-12308998 None:intergenic 35.0%
ATAGAGATCGGTCAGATGAT+TGG - chr1_2:12307125-12307144 Msa0056670:CDS 40.0%
TAGAGATCGGTCAGATGATT+GGG - chr1_2:12307126-12307145 Msa0056670:CDS 40.0%
! AGCAAAGTGATGGAAGCAAA+AGG - chr1_2:12307164-12307183 Msa0056670:intron 40.0%
AGCTTTCTTGCACAACATTG+TGG - chr1_2:12307400-12307419 Msa0056670:intron 40.0%
CTAAACTTTCTTCCAACCGT+AGG - chr1_2:12307529-12307548 Msa0056670:intron 40.0%
ATACTCTAGTGAACGACCTA+CGG + chr1_2:12307548-12307567 None:intergenic 40.0%
AGGTCGTTCACTAGAGTATA+TGG - chr1_2:12307549-12307568 Msa0056670:CDS 40.0%
!! TTTCAAAACGAAGGTGTCCA+GGG + chr1_2:12307692-12307711 None:intergenic 40.0%
!! AGGCTGCTTTAAAGCATCAA+AGG - chr1_2:12307947-12307966 Msa0056670:intron 40.0%
!! GGCTGCTTTAAAGCATCAAA+GGG - chr1_2:12307948-12307967 Msa0056670:intron 40.0%
!! AAAGCATCAAAGGGCATTTG+AGG - chr1_2:12307957-12307976 Msa0056670:intron 40.0%
!! GGAGGTACTATAATCAGCAT+TGG - chr1_2:12308235-12308254 Msa0056670:CDS 40.0%
! AATCAGCATTGGGAAAATGG+GGG - chr1_2:12308246-12308265 Msa0056670:CDS 40.0%
! AGGCAGCTAATTTGAAACAG+AGG - chr1_2:12308376-12308395 Msa0056670:intron 40.0%
CTAGCAATGTTTGCAAGGAT+TGG + chr1_2:12308645-12308664 None:intergenic 40.0%
AAACATTGCTAGAGAGGCTT+TGG - chr1_2:12308653-12308672 Msa0056670:intron 40.0%
! TGCACACATGATTGGCTATA+TGG - chr1_2:12308783-12308802 Msa0056670:intron 40.0%
CTTGTTTGAACGCAACGAAA+AGG + chr1_2:12308814-12308833 None:intergenic 40.0%
! CTTTTCGTTGCGTTCAAACA+AGG - chr1_2:12308812-12308831 Msa0056670:intron 40.0%
GTTGCGTTCAAACAAGGATT+TGG - chr1_2:12308818-12308837 Msa0056670:intron 40.0%
ATAGAGATCGGTCAGATGAT+TGG - chr1_2:12307125-12307144 Msa0056670:CDS 40.0%
TAGAGATCGGTCAGATGATT+GGG - chr1_2:12307126-12307145 Msa0056670:CDS 40.0%
! AGCAAAGTGATGGAAGCAAA+AGG - chr1_2:12307164-12307183 Msa0056670:intron 40.0%
AGCTTTCTTGCACAACATTG+TGG - chr1_2:12307400-12307419 Msa0056670:intron 40.0%
CTAAACTTTCTTCCAACCGT+AGG - chr1_2:12307529-12307548 Msa0056670:intron 40.0%
ATACTCTAGTGAACGACCTA+CGG + chr1_2:12307548-12307567 None:intergenic 40.0%
AGGTCGTTCACTAGAGTATA+TGG - chr1_2:12307549-12307568 Msa0056670:CDS 40.0%
!! TTTCAAAACGAAGGTGTCCA+GGG + chr1_2:12307692-12307711 None:intergenic 40.0%
!! AGGCTGCTTTAAAGCATCAA+AGG - chr1_2:12307947-12307966 Msa0056670:intron 40.0%
!! GGCTGCTTTAAAGCATCAAA+GGG - chr1_2:12307948-12307967 Msa0056670:intron 40.0%
!! AAAGCATCAAAGGGCATTTG+AGG - chr1_2:12307957-12307976 Msa0056670:intron 40.0%
!! GGAGGTACTATAATCAGCAT+TGG - chr1_2:12308235-12308254 Msa0056670:CDS 40.0%
! AATCAGCATTGGGAAAATGG+GGG - chr1_2:12308246-12308265 Msa0056670:CDS 40.0%
! AGGCAGCTAATTTGAAACAG+AGG - chr1_2:12308376-12308395 Msa0056670:intron 40.0%
CTAGCAATGTTTGCAAGGAT+TGG + chr1_2:12308645-12308664 None:intergenic 40.0%
AAACATTGCTAGAGAGGCTT+TGG - chr1_2:12308653-12308672 Msa0056670:intron 40.0%
! TGCACACATGATTGGCTATA+TGG - chr1_2:12308783-12308802 Msa0056670:intron 40.0%
CTTGTTTGAACGCAACGAAA+AGG + chr1_2:12308814-12308833 None:intergenic 40.0%
! CTTTTCGTTGCGTTCAAACA+AGG - chr1_2:12308812-12308831 Msa0056670:intron 40.0%
GTTGCGTTCAAACAAGGATT+TGG - chr1_2:12308818-12308837 Msa0056670:intron 40.0%
GTATTGTTAGAGCCAAGTGC+TGG + chr1_2:12307076-12307095 None:intergenic 45.0%
!! TATCATCGGCTCGCTTTGTT+GGG - chr1_2:12307101-12307120 Msa0056670:exon 45.0%
! GCTTTGTTGGGCATAGAGAT+CGG - chr1_2:12307113-12307132 Msa0056670:exon 45.0%
TAGTGTTTCCTCACTCTCAC+AGG - chr1_2:12307321-12307340 Msa0056670:CDS 45.0%
!! TTTGCCTCAGCATTGACACA+TGG - chr1_2:12307428-12307447 Msa0056670:intron 45.0%
AAGTCCATGTGTCAATGCTG+AGG + chr1_2:12307435-12307454 None:intergenic 45.0%
TTGAGTGGTGCTTGAATGCT+TGG - chr1_2:12307581-12307600 Msa0056670:CDS 45.0%
TGAGTGGTGCTTGAATGCTT+GGG - chr1_2:12307582-12307601 Msa0056670:CDS 45.0%
!! CTTTCAAAACGAAGGTGTCC+AGG + chr1_2:12307693-12307712 None:intergenic 45.0%
!! CTGGACACCTTCGTTTTGAA+AGG - chr1_2:12307691-12307710 Msa0056670:CDS 45.0%
TCACGAGTTAGAAAAGGGGA+AGG - chr1_2:12308008-12308027 Msa0056670:intron 45.0%
CACGAGTTAGAAAAGGGGAA+GGG - chr1_2:12308009-12308028 Msa0056670:intron 45.0%
! TAGCCAGTTGTGTCATTCCA+AGG - chr1_2:12308179-12308198 Msa0056670:CDS 45.0%
ACAGTGTACATTCAGGTCCT+TGG + chr1_2:12308199-12308218 None:intergenic 45.0%
! TACAGAGACCTCTGAGGATT+TGG - chr1_2:12308581-12308600 Msa0056670:intron 45.0%
CCTCTCTAGCAATGTTTGCA+AGG + chr1_2:12308650-12308669 None:intergenic 45.0%
CCTTGCAAACATTGCTAGAG+AGG - chr1_2:12308647-12308666 Msa0056670:intron 45.0%
AAGTGCACACTCAGACGTTA+GGG + chr1_2:12308694-12308713 None:intergenic 45.0%
GTATTGTTAGAGCCAAGTGC+TGG + chr1_2:12307076-12307095 None:intergenic 45.0%
!! TATCATCGGCTCGCTTTGTT+GGG - chr1_2:12307101-12307120 Msa0056670:exon 45.0%
! GCTTTGTTGGGCATAGAGAT+CGG - chr1_2:12307113-12307132 Msa0056670:exon 45.0%
TAGTGTTTCCTCACTCTCAC+AGG - chr1_2:12307321-12307340 Msa0056670:CDS 45.0%
!! TTTGCCTCAGCATTGACACA+TGG - chr1_2:12307428-12307447 Msa0056670:intron 45.0%
AAGTCCATGTGTCAATGCTG+AGG + chr1_2:12307435-12307454 None:intergenic 45.0%
TTGAGTGGTGCTTGAATGCT+TGG - chr1_2:12307581-12307600 Msa0056670:CDS 45.0%
TGAGTGGTGCTTGAATGCTT+GGG - chr1_2:12307582-12307601 Msa0056670:CDS 45.0%
!! CTTTCAAAACGAAGGTGTCC+AGG + chr1_2:12307693-12307712 None:intergenic 45.0%
!! CTGGACACCTTCGTTTTGAA+AGG - chr1_2:12307691-12307710 Msa0056670:CDS 45.0%
TCACGAGTTAGAAAAGGGGA+AGG - chr1_2:12308008-12308027 Msa0056670:intron 45.0%
CACGAGTTAGAAAAGGGGAA+GGG - chr1_2:12308009-12308028 Msa0056670:intron 45.0%
! TAGCCAGTTGTGTCATTCCA+AGG - chr1_2:12308179-12308198 Msa0056670:CDS 45.0%
ACAGTGTACATTCAGGTCCT+TGG + chr1_2:12308199-12308218 None:intergenic 45.0%
! TACAGAGACCTCTGAGGATT+TGG - chr1_2:12308581-12308600 Msa0056670:intron 45.0%
CCTCTCTAGCAATGTTTGCA+AGG + chr1_2:12308650-12308669 None:intergenic 45.0%
CCTTGCAAACATTGCTAGAG+AGG - chr1_2:12308647-12308666 Msa0056670:intron 45.0%
AAGTGCACACTCAGACGTTA+GGG + chr1_2:12308694-12308713 None:intergenic 45.0%
!! GTATCATCGGCTCGCTTTGT+TGG - chr1_2:12307100-12307119 Msa0056670:three_prime_UTR 50.0%
GTTCATTCTGGCAAGCCTCT+TGG + chr1_2:12307210-12307229 None:intergenic 50.0%
CAATGTAGCCTGTGAGAGTG+AGG + chr1_2:12307332-12307351 None:intergenic 50.0%
CTCACTCTCACAGGCTACAT+TGG - chr1_2:12307330-12307349 Msa0056670:CDS 50.0%
TCTAGTGAACGACCTACGGT+TGG + chr1_2:12307544-12307563 None:intergenic 50.0%
GGTCCTTGGAATGACACAAC+TGG + chr1_2:12308185-12308204 None:intergenic 50.0%
GGAAGATACAGAGACCTCTG+AGG - chr1_2:12308575-12308594 Msa0056670:intron 50.0%
TCAGACGTTAGGGTTGAGAC+AGG + chr1_2:12308684-12308703 None:intergenic 50.0%
CAAGTGCACACTCAGACGTT+AGG + chr1_2:12308695-12308714 None:intergenic 50.0%
CTAACGTCTGAGTGTGCACT+TGG - chr1_2:12308693-12308712 Msa0056670:intron 50.0%
CGCTTGTCTGCACACATGAT+TGG - chr1_2:12308775-12308794 Msa0056670:intron 50.0%
!! GTATCATCGGCTCGCTTTGT+TGG - chr1_2:12307100-12307119 Msa0056670:three_prime_UTR 50.0%
GTTCATTCTGGCAAGCCTCT+TGG + chr1_2:12307210-12307229 None:intergenic 50.0%
CAATGTAGCCTGTGAGAGTG+AGG + chr1_2:12307332-12307351 None:intergenic 50.0%
CTCACTCTCACAGGCTACAT+TGG - chr1_2:12307330-12307349 Msa0056670:CDS 50.0%
TCTAGTGAACGACCTACGGT+TGG + chr1_2:12307544-12307563 None:intergenic 50.0%
GGTCCTTGGAATGACACAAC+TGG + chr1_2:12308185-12308204 None:intergenic 50.0%
GGAAGATACAGAGACCTCTG+AGG - chr1_2:12308575-12308594 Msa0056670:intron 50.0%
TCAGACGTTAGGGTTGAGAC+AGG + chr1_2:12308684-12308703 None:intergenic 50.0%
CAAGTGCACACTCAGACGTT+AGG + chr1_2:12308695-12308714 None:intergenic 50.0%
CTAACGTCTGAGTGTGCACT+TGG - chr1_2:12308693-12308712 Msa0056670:intron 50.0%
CGCTTGTCTGCACACATGAT+TGG - chr1_2:12308775-12308794 Msa0056670:intron 50.0%
CAGGTTGCTACTCCAGCACT+TGG - chr1_2:12307061-12307080 Msa0056670:three_prime_UTR 55.0%
CAGGTTGCTACTCCAGCACT+TGG - chr1_2:12307061-12307080 Msa0056670:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 12307028 12309079 12307028 ID=Msa0056670;Name=Msa0056670
chr1_2 mRNA 12307028 12309079 12307028 ID=Msa0056670-mRNA-1;Parent=Msa0056670;Name=Msa0056670-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.25|0.2|0.4|0.25|0.2|5|92|270
chr1_2 exon 12307028 12307175 12307028 ID=Msa0056670-mRNA-1:exon:4835;Parent=Msa0056670-mRNA-1
chr1_2 exon 12307252 12307358 12307252 ID=Msa0056670-mRNA-1:exon:4834;Parent=Msa0056670-mRNA-1
chr1_2 exon 12307542 12307784 12307542 ID=Msa0056670-mRNA-1:exon:4833;Parent=Msa0056670-mRNA-1
chr1_2 exon 12308106 12308300 12308106 ID=Msa0056670-mRNA-1:exon:4832;Parent=Msa0056670-mRNA-1
chr1_2 exon 12308868 12309079 12308868 ID=Msa0056670-mRNA-1:exon:4831;Parent=Msa0056670-mRNA-1
chr1_2 CDS 12308868 12309079 12308868 ID=Msa0056670-mRNA-1:cds;Parent=Msa0056670-mRNA-1
chr1_2 CDS 12308106 12308300 12308106 ID=Msa0056670-mRNA-1:cds;Parent=Msa0056670-mRNA-1
chr1_2 CDS 12307542 12307784 12307542 ID=Msa0056670-mRNA-1:cds;Parent=Msa0056670-mRNA-1
chr1_2 CDS 12307252 12307358 12307252 ID=Msa0056670-mRNA-1:cds;Parent=Msa0056670-mRNA-1
chr1_2 CDS 12307120 12307175 12307120 ID=Msa0056670-mRNA-1:cds;Parent=Msa0056670-mRNA-1
chr1_2 three_prime_UTR 12307028 12307119 12307028 ID=Msa0056670-mRNA-1:three_prime_utr;Parent=Msa0056670-mRNA-1
Gene Sequence

>Msa0056670

ATGAGTGACCAAGATGACTTTATTGAAGAGAATCAGGTTGCTACTCCAGCACTTGGCTCTAACAATACTAGTGTATCATCGGCTCGCTTTGTTGGGCATAGAGATCGGTCAGATGATTGGGATCACTTTACTGAAGAGCAAAGTGATGGAAGCAAAAGGCAGAAATTTGACAAGTTTGACCAAGAGGCTTGCCAGAATGAACTTGTTAAGATTGATGCAGTTCAATATACAAGGTCATCTCCTTCTATATTGTCTGGATTTGAAGCATGTGCTGAGCAAGAAAAAATTGAAAGTGAAGGATATGTTCACATGGATATTGAAACTAGGTGGAATTTGTCATATGAGATGTTGGAGGCTGCTTTAAAGCATCAAAGGGCATTTGAGGACCTTGAGTTACATGACAAAAAGTACAAAGTTGGATATATAAATTGGATGATTGATCAGATTTTTAATTCAGTTGAGGCAGCTAATTTGAAACAGAGGTTAGAATCTTGTTTGAAATCCCTTTTTGAGGAATATAATGATGGAGAAGAGAAGTTGCAAAATGATTCACAAAAAGCACAATTTGATGAAGAAGGTAAAGAGGATCCTTATAGTTGGAATGAGTTTCGACAATCGCATGAATCAAGTTTCAAATCTGAGCTAAATAATTATCTTAATTTTGATCTTATGCAAGCGCTTGTCTGCACACATGATTGGCTATATGGAAAACCCTTTTCGTTGCGTTCAAACAAGGATTTGGAAAAGCTTAAGCAAGAAATGGTTTACCAACTAGATATTACATGTTCAACCTTTACTGTTCCTGATGATTGA

Protein sequence

>Msa0056670

MSDQDDFIEENQVATPALGSNNTSVSSARFVGHRDRSDDWDHFTEEQSDGSKRQKFDKFDQEACQNELVKIDAVQYTRSSPSILSGFEACAEQEKIESEGYVHMDIETRWNLSYEMLEAALKHQRAFEDLELHDKKYKVGYINWMIDQIFNSVEAANLKQRLESCLKSLFEEYNDGEEKLQNDSQKAQFDEEGKEDPYSWNEFRQSHESSFKSELNNYLNFDLMQALVCTHDWLYGKPFSLRSNKDLEKLKQEMVYQLDITCSTFTVPDD*