Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0056670 | PNY08352.1 | 67.123 | 73 | 22 | 2 | 66 | 137 | 263 | 334 | 9.40e-20 | 100 |
Msa0056670 | PNY08352.1 | 73.913 | 92 | 22 | 2 | 132 | 223 | 443 | 532 | 1.13e-32 | 137 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0056670 | A0A2K3NZ93 | 67.123 | 73 | 22 | 2 | 66 | 137 | 263 | 334 | 4.49e-20 | 100 |
Msa0056670 | A0A2K3NZ93 | 73.913 | 92 | 22 | 2 | 132 | 223 | 443 | 532 | 5.40e-33 | 137 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0056560 | Msa0056670 | 0.929845 | 3.867618e-93 | -8.615850e-47 |
Msa0056670 | Msa0056730 | 0.865365 | 6.224591e-65 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0056670 | MtrunA17_Chr4g0052601 | 47.297 | 74 | 38 | 1 | 65 | 137 | 298 | 371 | 3.30e-15 | 75.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 48 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGGATGCTTGTTCTTTATT+TGG | 0.183079 | 1_2:-12307095 | Msa0056670:three_prime_UTR |
CATCATTATATTCCTCAAAA+AGG | 0.217920 | 1_2:+12307666 | None:intergenic |
AGAAAGATAAATTGCTTAAA+AGG | 0.227245 | 1_2:+12307037 | None:intergenic |
CTGTTCCTGATGATTGATTA+AGG | 0.263570 | 1_2:-12307114 | Msa0056670:exon |
ACAAAGTTGGATATATAAAT+TGG | 0.273647 | 1_2:-12307760 | Msa0056670:CDS |
TGCACACATGATTGGCTATA+TGG | 0.290733 | 1_2:-12307302 | Msa0056670:CDS |
GTTGCGTTCAAACAAGGATT+TGG | 0.301184 | 1_2:-12307267 | Msa0056670:CDS |
CGAAACTCATTCCAACTATA+AGG | 0.319764 | 1_2:+12307581 | None:intergenic |
TGACTTTATTGAAGAGAATC+AGG | 0.331103 | 1_2:-12309043 | Msa0056670:CDS |
ACATCTTAACAAGTTCATTC+TGG | 0.335369 | 1_2:+12308866 | None:intergenic |
GTATCATCGGCTCGCTTTGT+TGG | 0.389838 | 1_2:-12308985 | Msa0056670:CDS |
TATCATCGGCTCGCTTTGTT+GGG | 0.392928 | 1_2:-12308984 | Msa0056670:CDS |
AGAATCACTGTATTAATTCA+AGG | 0.394977 | 1_2:-12307067 | Msa0056670:three_prime_UTR |
TCATCTCCTTCTATATTGTC+TGG | 0.409357 | 1_2:-12308256 | Msa0056670:CDS |
CGCTTGTCTGCACACATGAT+TGG | 0.415433 | 1_2:-12307310 | Msa0056670:CDS |
TCAAATCCAGACAATATAGA+AGG | 0.422190 | 1_2:+12308250 | None:intergenic |
TCTCTTCAATAAAGTCATCT+TGG | 0.424426 | 1_2:+12309049 | None:intergenic |
CTTGTTTGAACGCAACGAAA+AGG | 0.433601 | 1_2:+12307274 | None:intergenic |
ATAGAGATCGGTCAGATGAT+TGG | 0.447056 | 1_2:-12308960 | Msa0056670:CDS |
TAGAGATCGGTCAGATGATT+GGG | 0.457439 | 1_2:-12308959 | Msa0056670:CDS |
AAAGCATCAAAGGGCATTTG+AGG | 0.459348 | 1_2:-12308128 | Msa0056670:CDS |
AGCATCCTTAATCAATCATC+AGG | 0.462149 | 1_2:+12307109 | None:intergenic |
GAATTTGTCATATGAGATGT+TGG | 0.477507 | 1_2:-12308161 | Msa0056670:CDS |
TTGTTTGAACGCAACGAAAA+GGG | 0.479809 | 1_2:+12307275 | None:intergenic |
GTTCATTCTGGCAAGCCTCT+TGG | 0.483141 | 1_2:+12308878 | None:intergenic |
GTAAAGAGGATCCTTATAGT+TGG | 0.505450 | 1_2:-12307592 | Msa0056670:CDS |
TTTGATCCTAGGTACAAAGT+TGG | 0.507835 | 1_2:-12307773 | Msa0056670:intron |
AAGTCATCTTGGTCACTCAT+TGG | 0.513648 | 1_2:+12309060 | None:intergenic |
AGGCTGCTTTAAAGCATCAA+AGG | 0.529819 | 1_2:-12308138 | Msa0056670:CDS |
TTGAACATGTAATATCTAGT+TGG | 0.531858 | 1_2:+12307143 | None:intergenic |
AAAGCACAATTTGATGAAGA+AGG | 0.531971 | 1_2:-12307614 | Msa0056670:CDS |
GCTTTGTTGGGCATAGAGAT+CGG | 0.532380 | 1_2:-12308972 | Msa0056670:CDS |
GGCTGCTTTAAAGCATCAAA+GGG | 0.533188 | 1_2:-12308137 | Msa0056670:CDS |
GTATTGTTAGAGCCAAGTGC+TGG | 0.534057 | 1_2:+12309012 | None:intergenic |
CAGGTTGCTACTCCAGCACT+TGG | 0.535820 | 1_2:-12309024 | Msa0056670:CDS |
TAACAATACTAGTGTATCAT+CGG | 0.549701 | 1_2:-12308998 | Msa0056670:CDS |
TCAATCATCAGGAACAGTAA+AGG | 0.554250 | 1_2:+12307120 | None:intergenic |
AGCAAAGTGATGGAAGCAAA+AGG | 0.557939 | 1_2:-12308921 | Msa0056670:CDS |
ATTTGATGAAGAAGGTAAAG+AGG | 0.563809 | 1_2:-12307606 | Msa0056670:CDS |
ATTTGACAAGTTTGACCAAG+AGG | 0.565281 | 1_2:-12308893 | Msa0056670:CDS |
TTTACTGAAGAGCAAAGTGA+TGG | 0.596882 | 1_2:-12308931 | Msa0056670:CDS |
AGGCAGCTAATTTGAAACAG+AGG | 0.598299 | 1_2:-12307709 | Msa0056670:CDS |
GTGATGCAGTTCAATATACA+AGG | 0.610197 | 1_2:-12308279 | Msa0056670:CDS |
GATTTGGAAAAGCTTAAGCA+AGG | 0.625887 | 1_2:-12307251 | Msa0056670:intron |
TTTGTCATATGAGATGTTGG+AGG | 0.654353 | 1_2:-12308158 | Msa0056670:CDS |
ACATGGATATTGAAACTAGG+TGG | 0.662631 | 1_2:-12308183 | Msa0056670:CDS |
TTCACATGGATATTGAAACT+AGG | 0.666709 | 1_2:-12308186 | Msa0056670:CDS |
AAGTGAAGGATATGTTCACA+TGG | 0.671691 | 1_2:-12308200 | Msa0056670:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAGTAATATATATATGTTAG+AGG | - | chr1_2:12308134-12308153 | Msa0056670:CDS | 15.0% |
!! | TAGTAATATATATATGTTAG+AGG | - | chr1_2:12308134-12308153 | Msa0056670:CDS | 15.0% |
!! | AGAATTTCAAAAGTTTCTAA+AGG | - | chr1_2:12307282-12307301 | Msa0056670:CDS | 20.0% |
!!! | TCATGATATTTTAACTCTAT+GGG | - | chr1_2:12307354-12307373 | Msa0056670:intron | 20.0% |
!!! | TATTTTGAACATGATATTGA+AGG | - | chr1_2:12307744-12307763 | Msa0056670:CDS | 20.0% |
!!! | ATATATATGTTAGAGGTATT+TGG | - | chr1_2:12308141-12308160 | Msa0056670:CDS | 20.0% |
!! | ACAAAGTTGGATATATAAAT+TGG | - | chr1_2:12308325-12308344 | Msa0056670:intron | 20.0% |
!! | ATCATTATATTCCTCAAAAA+GGG | + | chr1_2:12308421-12308440 | None:intergenic | 20.0% |
!! | AGAAAGATAAATTGCTTAAA+AGG | + | chr1_2:12309051-12309070 | None:intergenic | 20.0% |
!! | AGAATTTCAAAAGTTTCTAA+AGG | - | chr1_2:12307282-12307301 | Msa0056670:CDS | 20.0% |
!!! | TCATGATATTTTAACTCTAT+GGG | - | chr1_2:12307354-12307373 | Msa0056670:intron | 20.0% |
!!! | TATTTTGAACATGATATTGA+AGG | - | chr1_2:12307744-12307763 | Msa0056670:CDS | 20.0% |
!!! | ATATATATGTTAGAGGTATT+TGG | - | chr1_2:12308141-12308160 | Msa0056670:CDS | 20.0% |
!! | ACAAAGTTGGATATATAAAT+TGG | - | chr1_2:12308325-12308344 | Msa0056670:intron | 20.0% |
!! | ATCATTATATTCCTCAAAAA+GGG | + | chr1_2:12308421-12308440 | None:intergenic | 20.0% |
!! | AGAAAGATAAATTGCTTAAA+AGG | + | chr1_2:12309051-12309070 | None:intergenic | 20.0% |
! | TAACAATACTAGTGTATCAT+CGG | - | chr1_2:12307087-12307106 | Msa0056670:three_prime_UTR | 25.0% |
! | TACAAATGAAATAGGAATGT+CGG | + | chr1_2:12307254-12307273 | None:intergenic | 25.0% |
! | TCATTCTCTACAAATGAAAT+AGG | + | chr1_2:12307262-12307281 | None:intergenic | 25.0% |
!!! | CTCATGATATTTTAACTCTA+TGG | - | chr1_2:12307353-12307372 | Msa0056670:intron | 25.0% |
! | CCAGTTATTATCAATAAAGT+GGG | + | chr1_2:12307491-12307510 | None:intergenic | 25.0% |
! | TCCAGTTATTATCAATAAAG+TGG | + | chr1_2:12307492-12307511 | None:intergenic | 25.0% |
! | CAAGAAAAAATTGAAAGTGA+AGG | - | chr1_2:12307871-12307890 | Msa0056670:intron | 25.0% |
! | TCATGAAAGATCTTCAAAAA+TGG | + | chr1_2:12308078-12308097 | None:intergenic | 25.0% |
! | TATATTACTAGTAGCATTAG+AGG | + | chr1_2:12308124-12308143 | None:intergenic | 25.0% |
! | ACTGTATAGCTATAATGATA+AGG | - | chr1_2:12308214-12308233 | Msa0056670:CDS | 25.0% |
!!! | TCAGATTTTTAATTCAGTTG+AGG | - | chr1_2:12308356-12308375 | Msa0056670:intron | 25.0% |
! | CATCATTATATTCCTCAAAA+AGG | + | chr1_2:12308422-12308441 | None:intergenic | 25.0% |
!!! | CTTTTTGAGGAATATAATGA+TGG | - | chr1_2:12308420-12308439 | Msa0056670:intron | 25.0% |
! | ATCTGAGCTAAATAAGTATT+TGG | - | chr1_2:12308551-12308570 | Msa0056670:intron | 25.0% |
! | AGGATTTGGATATCTTAAAT+TGG | - | chr1_2:12308595-12308614 | Msa0056670:intron | 25.0% |
! | ATTTGGATATCTTAAATTGG+TGG | - | chr1_2:12308598-12308617 | Msa0056670:intron | 25.0% |
!! | AGAAAACATGATGCTTATTT+TGG | - | chr1_2:12308859-12308878 | Msa0056670:intron | 25.0% |
! | TTGAACATGTAATATCTAGT+TGG | + | chr1_2:12308945-12308964 | None:intergenic | 25.0% |
! | AGAATCACTGTATTAATTCA+AGG | - | chr1_2:12309018-12309037 | Msa0056670:CDS | 25.0% |
! | TAACAATACTAGTGTATCAT+CGG | - | chr1_2:12307087-12307106 | Msa0056670:three_prime_UTR | 25.0% |
! | TACAAATGAAATAGGAATGT+CGG | + | chr1_2:12307254-12307273 | None:intergenic | 25.0% |
! | TCATTCTCTACAAATGAAAT+AGG | + | chr1_2:12307262-12307281 | None:intergenic | 25.0% |
!!! | CTCATGATATTTTAACTCTA+TGG | - | chr1_2:12307353-12307372 | Msa0056670:intron | 25.0% |
! | CCAGTTATTATCAATAAAGT+GGG | + | chr1_2:12307491-12307510 | None:intergenic | 25.0% |
! | TCCAGTTATTATCAATAAAG+TGG | + | chr1_2:12307492-12307511 | None:intergenic | 25.0% |
! | CAAGAAAAAATTGAAAGTGA+AGG | - | chr1_2:12307871-12307890 | Msa0056670:intron | 25.0% |
! | TCATGAAAGATCTTCAAAAA+TGG | + | chr1_2:12308078-12308097 | None:intergenic | 25.0% |
! | TATATTACTAGTAGCATTAG+AGG | + | chr1_2:12308124-12308143 | None:intergenic | 25.0% |
! | ACTGTATAGCTATAATGATA+AGG | - | chr1_2:12308214-12308233 | Msa0056670:CDS | 25.0% |
!!! | TCAGATTTTTAATTCAGTTG+AGG | - | chr1_2:12308356-12308375 | Msa0056670:intron | 25.0% |
! | CATCATTATATTCCTCAAAA+AGG | + | chr1_2:12308422-12308441 | None:intergenic | 25.0% |
!!! | CTTTTTGAGGAATATAATGA+TGG | - | chr1_2:12308420-12308439 | Msa0056670:intron | 25.0% |
! | ATCTGAGCTAAATAAGTATT+TGG | - | chr1_2:12308551-12308570 | Msa0056670:intron | 25.0% |
! | AGGATTTGGATATCTTAAAT+TGG | - | chr1_2:12308595-12308614 | Msa0056670:intron | 25.0% |
! | ATTTGGATATCTTAAATTGG+TGG | - | chr1_2:12308598-12308617 | Msa0056670:intron | 25.0% |
!! | AGAAAACATGATGCTTATTT+TGG | - | chr1_2:12308859-12308878 | Msa0056670:intron | 25.0% |
! | TTGAACATGTAATATCTAGT+TGG | + | chr1_2:12308945-12308964 | None:intergenic | 25.0% |
! | AGAATCACTGTATTAATTCA+AGG | - | chr1_2:12309018-12309037 | Msa0056670:CDS | 25.0% |
TCTCTTCAATAAAGTCATCT+TGG | + | chr1_2:12307039-12307058 | None:intergenic | 30.0% | |
TGACTTTATTGAAGAGAATC+AGG | - | chr1_2:12307042-12307061 | Msa0056670:three_prime_UTR | 30.0% | |
ACATCTTAACAAGTTCATTC+TGG | + | chr1_2:12307222-12307241 | None:intergenic | 30.0% | |
AGTGAGGAAACACTAAATTT+CGG | + | chr1_2:12307316-12307335 | None:intergenic | 30.0% | |
! | CCCACTTTATTGATAATAAC+TGG | - | chr1_2:12307488-12307507 | Msa0056670:intron | 30.0% |
TCACTAGAGTATATGGAATA+TGG | - | chr1_2:12307556-12307575 | Msa0056670:CDS | 30.0% | |
! | ATATGGAATATGGTATTGAG+TGG | - | chr1_2:12307566-12307585 | Msa0056670:CDS | 30.0% |
TTATGAGATTCGATGCTTAA+AGG | - | chr1_2:12307654-12307673 | Msa0056670:CDS | 30.0% | |
TTTGAACATGATATTGAAGG+AGG | - | chr1_2:12307747-12307766 | Msa0056670:CDS | 30.0% | |
TCAAATCCAGACAATATAGA+AGG | + | chr1_2:12307838-12307857 | None:intergenic | 30.0% | |
TTCACATGGATATTGAAACT+AGG | - | chr1_2:12307899-12307918 | Msa0056670:intron | 30.0% | |
GAATTTGTCATATGAGATGT+TGG | - | chr1_2:12307924-12307943 | Msa0056670:intron | 30.0% | |
! | ACTTTTTGTCATGTAACTCA+AGG | + | chr1_2:12307984-12308003 | None:intergenic | 30.0% |
TATGTTCACGAGTTAGAAAA+GGG | - | chr1_2:12308003-12308022 | Msa0056670:intron | 30.0% | |
!! | ATGTTAGAGGTATTTGGAAT+TGG | - | chr1_2:12308147-12308166 | Msa0056670:CDS | 30.0% |
GTATAGCTATAATGATAAGG+AGG | - | chr1_2:12308217-12308236 | Msa0056670:CDS | 30.0% | |
! | TATAATCAGCATTGGGAAAA+TGG | - | chr1_2:12308243-12308262 | Msa0056670:CDS | 30.0% |
! | ATAATCAGCATTGGGAAAAT+GGG | - | chr1_2:12308244-12308263 | Msa0056670:CDS | 30.0% |
ATATATCCAACTTTGTACCT+AGG | + | chr1_2:12308321-12308340 | None:intergenic | 30.0% | |
!! | TTGTTTGAAATCCCTTTTTG+AGG | - | chr1_2:12308407-12308426 | Msa0056670:intron | 30.0% |
AAAGCACAATTTGATGAAGA+AGG | - | chr1_2:12308471-12308490 | Msa0056670:intron | 30.0% | |
ATTTGATGAAGAAGGTAAAG+AGG | - | chr1_2:12308479-12308498 | Msa0056670:intron | 30.0% | |
TGAGCTAAATAAGTATTTGG+AGG | - | chr1_2:12308554-12308573 | Msa0056670:intron | 30.0% | |
!!! | CATGATGCTTATTTTGGAAA+AGG | - | chr1_2:12308865-12308884 | Msa0056670:intron | 30.0% |
! | TTTTTGTCTTTGTGCAGAAA+TGG | - | chr1_2:12308915-12308934 | Msa0056670:CDS | 30.0% |
AAGGATGCTTGTTCTTTATT+TGG | - | chr1_2:12308990-12309009 | Msa0056670:CDS | 30.0% | |
TCTCTTCAATAAAGTCATCT+TGG | + | chr1_2:12307039-12307058 | None:intergenic | 30.0% | |
TGACTTTATTGAAGAGAATC+AGG | - | chr1_2:12307042-12307061 | Msa0056670:three_prime_UTR | 30.0% | |
ACATCTTAACAAGTTCATTC+TGG | + | chr1_2:12307222-12307241 | None:intergenic | 30.0% | |
AGTGAGGAAACACTAAATTT+CGG | + | chr1_2:12307316-12307335 | None:intergenic | 30.0% | |
! | CCCACTTTATTGATAATAAC+TGG | - | chr1_2:12307488-12307507 | Msa0056670:intron | 30.0% |
TCACTAGAGTATATGGAATA+TGG | - | chr1_2:12307556-12307575 | Msa0056670:CDS | 30.0% | |
! | ATATGGAATATGGTATTGAG+TGG | - | chr1_2:12307566-12307585 | Msa0056670:CDS | 30.0% |
TTATGAGATTCGATGCTTAA+AGG | - | chr1_2:12307654-12307673 | Msa0056670:CDS | 30.0% | |
TTTGAACATGATATTGAAGG+AGG | - | chr1_2:12307747-12307766 | Msa0056670:CDS | 30.0% | |
TCAAATCCAGACAATATAGA+AGG | + | chr1_2:12307838-12307857 | None:intergenic | 30.0% | |
TTCACATGGATATTGAAACT+AGG | - | chr1_2:12307899-12307918 | Msa0056670:intron | 30.0% | |
GAATTTGTCATATGAGATGT+TGG | - | chr1_2:12307924-12307943 | Msa0056670:intron | 30.0% | |
! | ACTTTTTGTCATGTAACTCA+AGG | + | chr1_2:12307984-12308003 | None:intergenic | 30.0% |
TATGTTCACGAGTTAGAAAA+GGG | - | chr1_2:12308003-12308022 | Msa0056670:intron | 30.0% | |
!! | ATGTTAGAGGTATTTGGAAT+TGG | - | chr1_2:12308147-12308166 | Msa0056670:CDS | 30.0% |
GTATAGCTATAATGATAAGG+AGG | - | chr1_2:12308217-12308236 | Msa0056670:CDS | 30.0% | |
! | TATAATCAGCATTGGGAAAA+TGG | - | chr1_2:12308243-12308262 | Msa0056670:CDS | 30.0% |
! | ATAATCAGCATTGGGAAAAT+GGG | - | chr1_2:12308244-12308263 | Msa0056670:CDS | 30.0% |
ATATATCCAACTTTGTACCT+AGG | + | chr1_2:12308321-12308340 | None:intergenic | 30.0% | |
!! | TTGTTTGAAATCCCTTTTTG+AGG | - | chr1_2:12308407-12308426 | Msa0056670:intron | 30.0% |
AAAGCACAATTTGATGAAGA+AGG | - | chr1_2:12308471-12308490 | Msa0056670:intron | 30.0% | |
ATTTGATGAAGAAGGTAAAG+AGG | - | chr1_2:12308479-12308498 | Msa0056670:intron | 30.0% | |
TGAGCTAAATAAGTATTTGG+AGG | - | chr1_2:12308554-12308573 | Msa0056670:intron | 30.0% | |
!!! | CATGATGCTTATTTTGGAAA+AGG | - | chr1_2:12308865-12308884 | Msa0056670:intron | 30.0% |
! | TTTTTGTCTTTGTGCAGAAA+TGG | - | chr1_2:12308915-12308934 | Msa0056670:CDS | 30.0% |
AAGGATGCTTGTTCTTTATT+TGG | - | chr1_2:12308990-12309009 | Msa0056670:CDS | 30.0% | |
TTTACTGAAGAGCAAAGTGA+TGG | - | chr1_2:12307154-12307173 | Msa0056670:CDS | 35.0% | |
ATTTGACAAGTTTGACCAAG+AGG | - | chr1_2:12307192-12307211 | Msa0056670:intron | 35.0% | |
AAATGAAATAGGAATGTCGG+TGG | + | chr1_2:12307251-12307270 | None:intergenic | 35.0% | |
GTTAGACTAAAAATGCGACT+CGG | + | chr1_2:12307610-12307629 | None:intergenic | 35.0% | |
CGAATCTCATAATCATATCG+AGG | + | chr1_2:12307646-12307665 | None:intergenic | 35.0% | |
AAAGGAAAAGTTAATGACCC+TGG | - | chr1_2:12307672-12307691 | Msa0056670:CDS | 35.0% | |
GTAATCTCCTTTCAAAACGA+AGG | + | chr1_2:12307701-12307720 | None:intergenic | 35.0% | |
TGTTCAAAATATGAGCGCAA+GGG | + | chr1_2:12307735-12307754 | None:intergenic | 35.0% | |
ATGTTCAAAATATGAGCGCA+AGG | + | chr1_2:12307736-12307755 | None:intergenic | 35.0% | |
GTGATGCAGTTCAATATACA+AGG | - | chr1_2:12307806-12307825 | Msa0056670:intron | 35.0% | |
TCATCTCCTTCTATATTGTC+TGG | - | chr1_2:12307829-12307848 | Msa0056670:intron | 35.0% | |
AAGTGAAGGATATGTTCACA+TGG | - | chr1_2:12307885-12307904 | Msa0056670:intron | 35.0% | |
ACATGGATATTGAAACTAGG+TGG | - | chr1_2:12307902-12307921 | Msa0056670:intron | 35.0% | |
TTTGTCATATGAGATGTTGG+AGG | - | chr1_2:12307927-12307946 | Msa0056670:intron | 35.0% | |
GTATGTTCACGAGTTAGAAA+AGG | - | chr1_2:12308002-12308021 | Msa0056670:intron | 35.0% | |
ATGTTCACGAGTTAGAAAAG+GGG | - | chr1_2:12308004-12308023 | Msa0056670:intron | 35.0% | |
GTGTTCCTACATATGAAGAT+TGG | - | chr1_2:12308031-12308050 | Msa0056670:intron | 35.0% | |
TGGTTCCAATCTTCATATGT+AGG | + | chr1_2:12308039-12308058 | None:intergenic | 35.0% | |
TACATATGAAGATTGGAACC+AGG | - | chr1_2:12308038-12308057 | Msa0056670:intron | 35.0% | |
ATGGTAACATTAAGTAAGCC+TGG | + | chr1_2:12308059-12308078 | None:intergenic | 35.0% | |
TAGCTATACAGTGTACATTC+AGG | + | chr1_2:12308206-12308225 | None:intergenic | 35.0% | |
! | GAGGTACTATAATCAGCATT+GGG | - | chr1_2:12308236-12308255 | Msa0056670:CDS | 35.0% |
! | TAATCAGCATTGGGAAAATG+GGG | - | chr1_2:12308245-12308264 | Msa0056670:CDS | 35.0% |
TTGCTCTTGTATTTGATCCT+AGG | - | chr1_2:12308301-12308320 | Msa0056670:intron | 35.0% | |
TTTGATCCTAGGTACAAAGT+TGG | - | chr1_2:12308312-12308331 | Msa0056670:intron | 35.0% | |
GTAAAGAGGATCCTTATAGT+TGG | - | chr1_2:12308493-12308512 | Msa0056670:intron | 35.0% | |
CGAAACTCATTCCAACTATA+AGG | + | chr1_2:12308507-12308526 | None:intergenic | 35.0% | |
TAAGATATCCAAATCCTCAG+AGG | + | chr1_2:12308592-12308611 | None:intergenic | 35.0% | |
! | TGCACTTGGTAATAATGCAA+AGG | - | chr1_2:12308707-12308726 | Msa0056670:intron | 35.0% |
TTGTTTGAACGCAACGAAAA+GGG | + | chr1_2:12308813-12308832 | None:intergenic | 35.0% | |
GATTTGGAAAAGCTTAAGCA+AGG | - | chr1_2:12308834-12308853 | Msa0056670:intron | 35.0% | |
TCAATCATCAGGAACAGTAA+AGG | + | chr1_2:12308968-12308987 | None:intergenic | 35.0% | |
CTGTTCCTGATGATTGATTA+AGG | - | chr1_2:12308971-12308990 | Msa0056670:CDS | 35.0% | |
AGCATCCTTAATCAATCATC+AGG | + | chr1_2:12308979-12308998 | None:intergenic | 35.0% | |
TTTACTGAAGAGCAAAGTGA+TGG | - | chr1_2:12307154-12307173 | Msa0056670:CDS | 35.0% | |
ATTTGACAAGTTTGACCAAG+AGG | - | chr1_2:12307192-12307211 | Msa0056670:intron | 35.0% | |
AAATGAAATAGGAATGTCGG+TGG | + | chr1_2:12307251-12307270 | None:intergenic | 35.0% | |
GTTAGACTAAAAATGCGACT+CGG | + | chr1_2:12307610-12307629 | None:intergenic | 35.0% | |
CGAATCTCATAATCATATCG+AGG | + | chr1_2:12307646-12307665 | None:intergenic | 35.0% | |
AAAGGAAAAGTTAATGACCC+TGG | - | chr1_2:12307672-12307691 | Msa0056670:CDS | 35.0% | |
GTAATCTCCTTTCAAAACGA+AGG | + | chr1_2:12307701-12307720 | None:intergenic | 35.0% | |
TGTTCAAAATATGAGCGCAA+GGG | + | chr1_2:12307735-12307754 | None:intergenic | 35.0% | |
ATGTTCAAAATATGAGCGCA+AGG | + | chr1_2:12307736-12307755 | None:intergenic | 35.0% | |
GTGATGCAGTTCAATATACA+AGG | - | chr1_2:12307806-12307825 | Msa0056670:intron | 35.0% | |
TCATCTCCTTCTATATTGTC+TGG | - | chr1_2:12307829-12307848 | Msa0056670:intron | 35.0% | |
AAGTGAAGGATATGTTCACA+TGG | - | chr1_2:12307885-12307904 | Msa0056670:intron | 35.0% | |
ACATGGATATTGAAACTAGG+TGG | - | chr1_2:12307902-12307921 | Msa0056670:intron | 35.0% | |
TTTGTCATATGAGATGTTGG+AGG | - | chr1_2:12307927-12307946 | Msa0056670:intron | 35.0% | |
GTATGTTCACGAGTTAGAAA+AGG | - | chr1_2:12308002-12308021 | Msa0056670:intron | 35.0% | |
ATGTTCACGAGTTAGAAAAG+GGG | - | chr1_2:12308004-12308023 | Msa0056670:intron | 35.0% | |
GTGTTCCTACATATGAAGAT+TGG | - | chr1_2:12308031-12308050 | Msa0056670:intron | 35.0% | |
TGGTTCCAATCTTCATATGT+AGG | + | chr1_2:12308039-12308058 | None:intergenic | 35.0% | |
TACATATGAAGATTGGAACC+AGG | - | chr1_2:12308038-12308057 | Msa0056670:intron | 35.0% | |
ATGGTAACATTAAGTAAGCC+TGG | + | chr1_2:12308059-12308078 | None:intergenic | 35.0% | |
TAGCTATACAGTGTACATTC+AGG | + | chr1_2:12308206-12308225 | None:intergenic | 35.0% | |
! | GAGGTACTATAATCAGCATT+GGG | - | chr1_2:12308236-12308255 | Msa0056670:CDS | 35.0% |
! | TAATCAGCATTGGGAAAATG+GGG | - | chr1_2:12308245-12308264 | Msa0056670:CDS | 35.0% |
TTGCTCTTGTATTTGATCCT+AGG | - | chr1_2:12308301-12308320 | Msa0056670:intron | 35.0% | |
TTTGATCCTAGGTACAAAGT+TGG | - | chr1_2:12308312-12308331 | Msa0056670:intron | 35.0% | |
GTAAAGAGGATCCTTATAGT+TGG | - | chr1_2:12308493-12308512 | Msa0056670:intron | 35.0% | |
CGAAACTCATTCCAACTATA+AGG | + | chr1_2:12308507-12308526 | None:intergenic | 35.0% | |
TAAGATATCCAAATCCTCAG+AGG | + | chr1_2:12308592-12308611 | None:intergenic | 35.0% | |
! | TGCACTTGGTAATAATGCAA+AGG | - | chr1_2:12308707-12308726 | Msa0056670:intron | 35.0% |
TTGTTTGAACGCAACGAAAA+GGG | + | chr1_2:12308813-12308832 | None:intergenic | 35.0% | |
GATTTGGAAAAGCTTAAGCA+AGG | - | chr1_2:12308834-12308853 | Msa0056670:intron | 35.0% | |
TCAATCATCAGGAACAGTAA+AGG | + | chr1_2:12308968-12308987 | None:intergenic | 35.0% | |
CTGTTCCTGATGATTGATTA+AGG | - | chr1_2:12308971-12308990 | Msa0056670:CDS | 35.0% | |
AGCATCCTTAATCAATCATC+AGG | + | chr1_2:12308979-12308998 | None:intergenic | 35.0% | |
ATAGAGATCGGTCAGATGAT+TGG | - | chr1_2:12307125-12307144 | Msa0056670:CDS | 40.0% | |
TAGAGATCGGTCAGATGATT+GGG | - | chr1_2:12307126-12307145 | Msa0056670:CDS | 40.0% | |
! | AGCAAAGTGATGGAAGCAAA+AGG | - | chr1_2:12307164-12307183 | Msa0056670:intron | 40.0% |
AGCTTTCTTGCACAACATTG+TGG | - | chr1_2:12307400-12307419 | Msa0056670:intron | 40.0% | |
CTAAACTTTCTTCCAACCGT+AGG | - | chr1_2:12307529-12307548 | Msa0056670:intron | 40.0% | |
ATACTCTAGTGAACGACCTA+CGG | + | chr1_2:12307548-12307567 | None:intergenic | 40.0% | |
AGGTCGTTCACTAGAGTATA+TGG | - | chr1_2:12307549-12307568 | Msa0056670:CDS | 40.0% | |
!! | TTTCAAAACGAAGGTGTCCA+GGG | + | chr1_2:12307692-12307711 | None:intergenic | 40.0% |
!! | AGGCTGCTTTAAAGCATCAA+AGG | - | chr1_2:12307947-12307966 | Msa0056670:intron | 40.0% |
!! | GGCTGCTTTAAAGCATCAAA+GGG | - | chr1_2:12307948-12307967 | Msa0056670:intron | 40.0% |
!! | AAAGCATCAAAGGGCATTTG+AGG | - | chr1_2:12307957-12307976 | Msa0056670:intron | 40.0% |
!! | GGAGGTACTATAATCAGCAT+TGG | - | chr1_2:12308235-12308254 | Msa0056670:CDS | 40.0% |
! | AATCAGCATTGGGAAAATGG+GGG | - | chr1_2:12308246-12308265 | Msa0056670:CDS | 40.0% |
! | AGGCAGCTAATTTGAAACAG+AGG | - | chr1_2:12308376-12308395 | Msa0056670:intron | 40.0% |
CTAGCAATGTTTGCAAGGAT+TGG | + | chr1_2:12308645-12308664 | None:intergenic | 40.0% | |
AAACATTGCTAGAGAGGCTT+TGG | - | chr1_2:12308653-12308672 | Msa0056670:intron | 40.0% | |
! | TGCACACATGATTGGCTATA+TGG | - | chr1_2:12308783-12308802 | Msa0056670:intron | 40.0% |
CTTGTTTGAACGCAACGAAA+AGG | + | chr1_2:12308814-12308833 | None:intergenic | 40.0% | |
! | CTTTTCGTTGCGTTCAAACA+AGG | - | chr1_2:12308812-12308831 | Msa0056670:intron | 40.0% |
GTTGCGTTCAAACAAGGATT+TGG | - | chr1_2:12308818-12308837 | Msa0056670:intron | 40.0% | |
ATAGAGATCGGTCAGATGAT+TGG | - | chr1_2:12307125-12307144 | Msa0056670:CDS | 40.0% | |
TAGAGATCGGTCAGATGATT+GGG | - | chr1_2:12307126-12307145 | Msa0056670:CDS | 40.0% | |
! | AGCAAAGTGATGGAAGCAAA+AGG | - | chr1_2:12307164-12307183 | Msa0056670:intron | 40.0% |
AGCTTTCTTGCACAACATTG+TGG | - | chr1_2:12307400-12307419 | Msa0056670:intron | 40.0% | |
CTAAACTTTCTTCCAACCGT+AGG | - | chr1_2:12307529-12307548 | Msa0056670:intron | 40.0% | |
ATACTCTAGTGAACGACCTA+CGG | + | chr1_2:12307548-12307567 | None:intergenic | 40.0% | |
AGGTCGTTCACTAGAGTATA+TGG | - | chr1_2:12307549-12307568 | Msa0056670:CDS | 40.0% | |
!! | TTTCAAAACGAAGGTGTCCA+GGG | + | chr1_2:12307692-12307711 | None:intergenic | 40.0% |
!! | AGGCTGCTTTAAAGCATCAA+AGG | - | chr1_2:12307947-12307966 | Msa0056670:intron | 40.0% |
!! | GGCTGCTTTAAAGCATCAAA+GGG | - | chr1_2:12307948-12307967 | Msa0056670:intron | 40.0% |
!! | AAAGCATCAAAGGGCATTTG+AGG | - | chr1_2:12307957-12307976 | Msa0056670:intron | 40.0% |
!! | GGAGGTACTATAATCAGCAT+TGG | - | chr1_2:12308235-12308254 | Msa0056670:CDS | 40.0% |
! | AATCAGCATTGGGAAAATGG+GGG | - | chr1_2:12308246-12308265 | Msa0056670:CDS | 40.0% |
! | AGGCAGCTAATTTGAAACAG+AGG | - | chr1_2:12308376-12308395 | Msa0056670:intron | 40.0% |
CTAGCAATGTTTGCAAGGAT+TGG | + | chr1_2:12308645-12308664 | None:intergenic | 40.0% | |
AAACATTGCTAGAGAGGCTT+TGG | - | chr1_2:12308653-12308672 | Msa0056670:intron | 40.0% | |
! | TGCACACATGATTGGCTATA+TGG | - | chr1_2:12308783-12308802 | Msa0056670:intron | 40.0% |
CTTGTTTGAACGCAACGAAA+AGG | + | chr1_2:12308814-12308833 | None:intergenic | 40.0% | |
! | CTTTTCGTTGCGTTCAAACA+AGG | - | chr1_2:12308812-12308831 | Msa0056670:intron | 40.0% |
GTTGCGTTCAAACAAGGATT+TGG | - | chr1_2:12308818-12308837 | Msa0056670:intron | 40.0% | |
GTATTGTTAGAGCCAAGTGC+TGG | + | chr1_2:12307076-12307095 | None:intergenic | 45.0% | |
!! | TATCATCGGCTCGCTTTGTT+GGG | - | chr1_2:12307101-12307120 | Msa0056670:exon | 45.0% |
! | GCTTTGTTGGGCATAGAGAT+CGG | - | chr1_2:12307113-12307132 | Msa0056670:exon | 45.0% |
TAGTGTTTCCTCACTCTCAC+AGG | - | chr1_2:12307321-12307340 | Msa0056670:CDS | 45.0% | |
!! | TTTGCCTCAGCATTGACACA+TGG | - | chr1_2:12307428-12307447 | Msa0056670:intron | 45.0% |
AAGTCCATGTGTCAATGCTG+AGG | + | chr1_2:12307435-12307454 | None:intergenic | 45.0% | |
TTGAGTGGTGCTTGAATGCT+TGG | - | chr1_2:12307581-12307600 | Msa0056670:CDS | 45.0% | |
TGAGTGGTGCTTGAATGCTT+GGG | - | chr1_2:12307582-12307601 | Msa0056670:CDS | 45.0% | |
!! | CTTTCAAAACGAAGGTGTCC+AGG | + | chr1_2:12307693-12307712 | None:intergenic | 45.0% |
!! | CTGGACACCTTCGTTTTGAA+AGG | - | chr1_2:12307691-12307710 | Msa0056670:CDS | 45.0% |
TCACGAGTTAGAAAAGGGGA+AGG | - | chr1_2:12308008-12308027 | Msa0056670:intron | 45.0% | |
CACGAGTTAGAAAAGGGGAA+GGG | - | chr1_2:12308009-12308028 | Msa0056670:intron | 45.0% | |
! | TAGCCAGTTGTGTCATTCCA+AGG | - | chr1_2:12308179-12308198 | Msa0056670:CDS | 45.0% |
ACAGTGTACATTCAGGTCCT+TGG | + | chr1_2:12308199-12308218 | None:intergenic | 45.0% | |
! | TACAGAGACCTCTGAGGATT+TGG | - | chr1_2:12308581-12308600 | Msa0056670:intron | 45.0% |
CCTCTCTAGCAATGTTTGCA+AGG | + | chr1_2:12308650-12308669 | None:intergenic | 45.0% | |
CCTTGCAAACATTGCTAGAG+AGG | - | chr1_2:12308647-12308666 | Msa0056670:intron | 45.0% | |
AAGTGCACACTCAGACGTTA+GGG | + | chr1_2:12308694-12308713 | None:intergenic | 45.0% | |
GTATTGTTAGAGCCAAGTGC+TGG | + | chr1_2:12307076-12307095 | None:intergenic | 45.0% | |
!! | TATCATCGGCTCGCTTTGTT+GGG | - | chr1_2:12307101-12307120 | Msa0056670:exon | 45.0% |
! | GCTTTGTTGGGCATAGAGAT+CGG | - | chr1_2:12307113-12307132 | Msa0056670:exon | 45.0% |
TAGTGTTTCCTCACTCTCAC+AGG | - | chr1_2:12307321-12307340 | Msa0056670:CDS | 45.0% | |
!! | TTTGCCTCAGCATTGACACA+TGG | - | chr1_2:12307428-12307447 | Msa0056670:intron | 45.0% |
AAGTCCATGTGTCAATGCTG+AGG | + | chr1_2:12307435-12307454 | None:intergenic | 45.0% | |
TTGAGTGGTGCTTGAATGCT+TGG | - | chr1_2:12307581-12307600 | Msa0056670:CDS | 45.0% | |
TGAGTGGTGCTTGAATGCTT+GGG | - | chr1_2:12307582-12307601 | Msa0056670:CDS | 45.0% | |
!! | CTTTCAAAACGAAGGTGTCC+AGG | + | chr1_2:12307693-12307712 | None:intergenic | 45.0% |
!! | CTGGACACCTTCGTTTTGAA+AGG | - | chr1_2:12307691-12307710 | Msa0056670:CDS | 45.0% |
TCACGAGTTAGAAAAGGGGA+AGG | - | chr1_2:12308008-12308027 | Msa0056670:intron | 45.0% | |
CACGAGTTAGAAAAGGGGAA+GGG | - | chr1_2:12308009-12308028 | Msa0056670:intron | 45.0% | |
! | TAGCCAGTTGTGTCATTCCA+AGG | - | chr1_2:12308179-12308198 | Msa0056670:CDS | 45.0% |
ACAGTGTACATTCAGGTCCT+TGG | + | chr1_2:12308199-12308218 | None:intergenic | 45.0% | |
! | TACAGAGACCTCTGAGGATT+TGG | - | chr1_2:12308581-12308600 | Msa0056670:intron | 45.0% |
CCTCTCTAGCAATGTTTGCA+AGG | + | chr1_2:12308650-12308669 | None:intergenic | 45.0% | |
CCTTGCAAACATTGCTAGAG+AGG | - | chr1_2:12308647-12308666 | Msa0056670:intron | 45.0% | |
AAGTGCACACTCAGACGTTA+GGG | + | chr1_2:12308694-12308713 | None:intergenic | 45.0% | |
!! | GTATCATCGGCTCGCTTTGT+TGG | - | chr1_2:12307100-12307119 | Msa0056670:three_prime_UTR | 50.0% |
GTTCATTCTGGCAAGCCTCT+TGG | + | chr1_2:12307210-12307229 | None:intergenic | 50.0% | |
CAATGTAGCCTGTGAGAGTG+AGG | + | chr1_2:12307332-12307351 | None:intergenic | 50.0% | |
CTCACTCTCACAGGCTACAT+TGG | - | chr1_2:12307330-12307349 | Msa0056670:CDS | 50.0% | |
TCTAGTGAACGACCTACGGT+TGG | + | chr1_2:12307544-12307563 | None:intergenic | 50.0% | |
GGTCCTTGGAATGACACAAC+TGG | + | chr1_2:12308185-12308204 | None:intergenic | 50.0% | |
GGAAGATACAGAGACCTCTG+AGG | - | chr1_2:12308575-12308594 | Msa0056670:intron | 50.0% | |
TCAGACGTTAGGGTTGAGAC+AGG | + | chr1_2:12308684-12308703 | None:intergenic | 50.0% | |
CAAGTGCACACTCAGACGTT+AGG | + | chr1_2:12308695-12308714 | None:intergenic | 50.0% | |
CTAACGTCTGAGTGTGCACT+TGG | - | chr1_2:12308693-12308712 | Msa0056670:intron | 50.0% | |
CGCTTGTCTGCACACATGAT+TGG | - | chr1_2:12308775-12308794 | Msa0056670:intron | 50.0% | |
!! | GTATCATCGGCTCGCTTTGT+TGG | - | chr1_2:12307100-12307119 | Msa0056670:three_prime_UTR | 50.0% |
GTTCATTCTGGCAAGCCTCT+TGG | + | chr1_2:12307210-12307229 | None:intergenic | 50.0% | |
CAATGTAGCCTGTGAGAGTG+AGG | + | chr1_2:12307332-12307351 | None:intergenic | 50.0% | |
CTCACTCTCACAGGCTACAT+TGG | - | chr1_2:12307330-12307349 | Msa0056670:CDS | 50.0% | |
TCTAGTGAACGACCTACGGT+TGG | + | chr1_2:12307544-12307563 | None:intergenic | 50.0% | |
GGTCCTTGGAATGACACAAC+TGG | + | chr1_2:12308185-12308204 | None:intergenic | 50.0% | |
GGAAGATACAGAGACCTCTG+AGG | - | chr1_2:12308575-12308594 | Msa0056670:intron | 50.0% | |
TCAGACGTTAGGGTTGAGAC+AGG | + | chr1_2:12308684-12308703 | None:intergenic | 50.0% | |
CAAGTGCACACTCAGACGTT+AGG | + | chr1_2:12308695-12308714 | None:intergenic | 50.0% | |
CTAACGTCTGAGTGTGCACT+TGG | - | chr1_2:12308693-12308712 | Msa0056670:intron | 50.0% | |
CGCTTGTCTGCACACATGAT+TGG | - | chr1_2:12308775-12308794 | Msa0056670:intron | 50.0% | |
CAGGTTGCTACTCCAGCACT+TGG | - | chr1_2:12307061-12307080 | Msa0056670:three_prime_UTR | 55.0% | |
CAGGTTGCTACTCCAGCACT+TGG | - | chr1_2:12307061-12307080 | Msa0056670:three_prime_UTR | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 12307028 | 12309079 | 12307028 | ID=Msa0056670;Name=Msa0056670 |
chr1_2 | mRNA | 12307028 | 12309079 | 12307028 | ID=Msa0056670-mRNA-1;Parent=Msa0056670;Name=Msa0056670-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.25|0.2|0.4|0.25|0.2|5|92|270 |
chr1_2 | exon | 12307028 | 12307175 | 12307028 | ID=Msa0056670-mRNA-1:exon:4835;Parent=Msa0056670-mRNA-1 |
chr1_2 | exon | 12307252 | 12307358 | 12307252 | ID=Msa0056670-mRNA-1:exon:4834;Parent=Msa0056670-mRNA-1 |
chr1_2 | exon | 12307542 | 12307784 | 12307542 | ID=Msa0056670-mRNA-1:exon:4833;Parent=Msa0056670-mRNA-1 |
chr1_2 | exon | 12308106 | 12308300 | 12308106 | ID=Msa0056670-mRNA-1:exon:4832;Parent=Msa0056670-mRNA-1 |
chr1_2 | exon | 12308868 | 12309079 | 12308868 | ID=Msa0056670-mRNA-1:exon:4831;Parent=Msa0056670-mRNA-1 |
chr1_2 | CDS | 12308868 | 12309079 | 12308868 | ID=Msa0056670-mRNA-1:cds;Parent=Msa0056670-mRNA-1 |
chr1_2 | CDS | 12308106 | 12308300 | 12308106 | ID=Msa0056670-mRNA-1:cds;Parent=Msa0056670-mRNA-1 |
chr1_2 | CDS | 12307542 | 12307784 | 12307542 | ID=Msa0056670-mRNA-1:cds;Parent=Msa0056670-mRNA-1 |
chr1_2 | CDS | 12307252 | 12307358 | 12307252 | ID=Msa0056670-mRNA-1:cds;Parent=Msa0056670-mRNA-1 |
chr1_2 | CDS | 12307120 | 12307175 | 12307120 | ID=Msa0056670-mRNA-1:cds;Parent=Msa0056670-mRNA-1 |
chr1_2 | three_prime_UTR | 12307028 | 12307119 | 12307028 | ID=Msa0056670-mRNA-1:three_prime_utr;Parent=Msa0056670-mRNA-1 |
Gene Sequence |
Protein sequence |