Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056560 | PNY08352.1 | 67.123 | 73 | 22 | 2 | 79 | 150 | 263 | 334 | 1.78e-19 | 100 |
| Msa0056560 | PNY08352.1 | 75.556 | 90 | 20 | 2 | 147 | 236 | 445 | 532 | 1.70e-32 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056560 | A0A2K3NZ93 | 67.123 | 73 | 22 | 2 | 79 | 150 | 263 | 334 | 8.52e-20 | 100 |
| Msa0056560 | A0A2K3NZ93 | 75.556 | 90 | 20 | 2 | 147 | 236 | 445 | 532 | 8.11e-33 | 137 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032920 | Msa0056560 | -0.801154 | 1.029416e-48 | -8.615850e-47 |
| Msa0056560 | Msa0056670 | 0.929845 | 3.867618e-93 | -8.615850e-47 |
| Msa0056560 | Msa0056730 | 0.914655 | 1.484657e-84 | -8.615850e-47 |
| Msa0056560 | Msa0079380 | 0.801837 | 7.457201e-49 | -8.615850e-47 |
| Msa0056560 | Msa0124060 | 0.800528 | 1.381800e-48 | -8.615850e-47 |
| Msa0056560 | Msa0168500 | 0.809637 | 1.715123e-50 | -8.615850e-47 |
| Msa0056560 | Msa0339500 | 0.809779 | 1.598772e-50 | -8.615850e-47 |
| Msa0056560 | Msa0378720 | 0.802317 | 5.942333e-49 | -8.615850e-47 |
| Msa0056560 | Msa0569200 | 0.815127 | 1.084172e-51 | -8.615850e-47 |
| Msa0056560 | Msa0650020 | 0.804880 | 1.747142e-49 | -8.615850e-47 |
| Msa0056560 | Msa0691980 | 0.811196 | 7.900997e-51 | -8.615850e-47 |
| Msa0056560 | Msa1066490 | 0.803786 | 2.951577e-49 | -8.615850e-47 |
| Msa0056560 | Msa1124110 | 0.800520 | 1.386576e-48 | -8.615850e-47 |
| Msa0056560 | Msa1209460 | 0.801812 | 7.547777e-49 | -8.615850e-47 |
| Msa0056560 | Msa1370010 | 0.806117 | 9.611886e-50 | -8.615850e-47 |
| Msa0056560 | Msa1423350 | 0.808585 | 2.880536e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056560 | MtrunA17_Chr4g0052601 | 47.297 | 74 | 38 | 1 | 78 | 150 | 298 | 371 | 4.66e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 48 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGATGCTTGTTCTTTATT+TGG | 0.183079 | 1_2:+12206249 | Msa0056560:three_prime_UTR |
| CATCATTATATTCCTCAAAA+AGG | 0.217920 | 1_2:-12205699 | None:intergenic |
| AGAAAGATAAATTGCTTAAA+AGG | 0.227245 | 1_2:-12206307 | None:intergenic |
| CTGTTCCTGATGATTGATTA+AGG | 0.263570 | 1_2:+12206230 | Msa0056560:exon |
| ACAAAGTTGGATATATAAAT+TGG | 0.273647 | 1_2:+12205605 | Msa0056560:CDS |
| TGCACACATGATTGGCTATA+TGG | 0.290733 | 1_2:+12206063 | Msa0056560:CDS |
| GTTGCGTTCAAACAAGGATT+TGG | 0.301184 | 1_2:+12206098 | Msa0056560:CDS |
| CGAAACTCATTCCAACTATA+AGG | 0.319764 | 1_2:-12205784 | None:intergenic |
| TGACTTTATTGAAGAGAATC+AGG | 0.331103 | 1_2:+12204322 | Msa0056560:CDS |
| ACATCTTAACAAGTTCATTC+TGG | 0.335369 | 1_2:-12204499 | None:intergenic |
| GTATCATCGGCTCGCTTTGT+TGG | 0.389838 | 1_2:+12204380 | Msa0056560:CDS |
| TATCATCGGCTCGCTTTGTT+GGG | 0.392928 | 1_2:+12204381 | Msa0056560:CDS |
| AGAATCACTGTATTAATTCA+AGG | 0.394977 | 1_2:+12206277 | Msa0056560:three_prime_UTR |
| TCATCTCCTTCTATATTGTC+TGG | 0.409357 | 1_2:+12205109 | Msa0056560:CDS |
| CGCTTGTCTGCACACATGAT+TGG | 0.415433 | 1_2:+12206055 | Msa0056560:CDS |
| TCAAATCCAGACAATATAGA+AGG | 0.422190 | 1_2:-12205115 | None:intergenic |
| TCTCTTCAATAAAGTCATCT+TGG | 0.424426 | 1_2:-12204316 | None:intergenic |
| CTTGTTTGAACGCAACGAAA+AGG | 0.433601 | 1_2:-12206091 | None:intergenic |
| ATAGAGATCGGTCAGATGAT+TGG | 0.447056 | 1_2:+12204405 | Msa0056560:CDS |
| TAGAGATCGGTCAGATGATT+GGG | 0.457439 | 1_2:+12204406 | Msa0056560:CDS |
| AAAGCATCAAAGGGCATTTG+AGG | 0.459348 | 1_2:+12205237 | Msa0056560:CDS |
| AGCATCCTTAATCAATCATC+AGG | 0.462149 | 1_2:-12206235 | None:intergenic |
| GAATTTGTCATATGAGATGT+TGG | 0.477507 | 1_2:+12205204 | Msa0056560:CDS |
| TTGTTTGAACGCAACGAAAA+GGG | 0.479809 | 1_2:-12206090 | None:intergenic |
| GTTCATTCTGGCAAGCCTCT+TGG | 0.483141 | 1_2:-12204487 | None:intergenic |
| GTAAAGAGGATCCTTATAGT+TGG | 0.505450 | 1_2:+12205773 | Msa0056560:CDS |
| TTTGATCCTAGGTACAAAGT+TGG | 0.507835 | 1_2:+12205592 | Msa0056560:intron |
| AAGTCATCTTGGTCACTCAT+TGG | 0.513648 | 1_2:-12204305 | None:intergenic |
| AGGCTGCTTTAAAGCATCAA+AGG | 0.529819 | 1_2:+12205227 | Msa0056560:CDS |
| TTGAACATGTAATATCTAGT+TGG | 0.531858 | 1_2:-12206201 | None:intergenic |
| AAAGCACAATTTGATGAAGA+AGG | 0.531971 | 1_2:+12205751 | Msa0056560:CDS |
| GCTTTGTTGGGCATAGAGAT+CGG | 0.532380 | 1_2:+12204393 | Msa0056560:CDS |
| GGCTGCTTTAAAGCATCAAA+GGG | 0.533188 | 1_2:+12205228 | Msa0056560:CDS |
| GTATTGTTAGAGCCAAGTGC+TGG | 0.534057 | 1_2:-12204353 | None:intergenic |
| CAGGTTGCTACTCCAGCACT+TGG | 0.535820 | 1_2:+12204341 | Msa0056560:CDS |
| TAACAATACTAGTGTATCAT+CGG | 0.549701 | 1_2:+12204367 | Msa0056560:CDS |
| TCAATCATCAGGAACAGTAA+AGG | 0.554250 | 1_2:-12206224 | None:intergenic |
| AGCAAAGTGATGGAAGCAAA+AGG | 0.557939 | 1_2:+12204444 | Msa0056560:CDS |
| ATTTGATGAAGAAGGTAAAG+AGG | 0.563809 | 1_2:+12205759 | Msa0056560:CDS |
| ATTTGACAAGTTTGACCAAG+AGG | 0.565281 | 1_2:+12204472 | Msa0056560:CDS |
| TTTACTGAAGAGCAAAGTGA+TGG | 0.596882 | 1_2:+12204434 | Msa0056560:CDS |
| AGGCAGCTAATTTGAAACAG+AGG | 0.598299 | 1_2:+12205656 | Msa0056560:CDS |
| GTGATGCAGTTCAATATACA+AGG | 0.610197 | 1_2:+12205086 | Msa0056560:intron |
| GATTTGGAAAAGCTTAAGCA+AGG | 0.625887 | 1_2:+12206114 | Msa0056560:CDS |
| TTTGTCATATGAGATGTTGG+AGG | 0.654353 | 1_2:+12205207 | Msa0056560:CDS |
| ACATGGATATTGAAACTAGG+TGG | 0.662631 | 1_2:+12205182 | Msa0056560:CDS |
| TTCACATGGATATTGAAACT+AGG | 0.666709 | 1_2:+12205179 | Msa0056560:CDS |
| AAGTGAAGGATATGTTCACA+TGG | 0.671691 | 1_2:+12205165 | Msa0056560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAATTATACAAGTTAG+TGG | - | chr1_2:12203521-12203540 | None:intergenic | 15.0% |
| !!! | AATTGACAAATTTTTTATTG+AGG | + | chr1_2:12203771-12203790 | Msa0056560:intron | 15.0% |
| !!! | AAATGAAACTTTATTTTACT+TGG | - | chr1_2:12204194-12204213 | None:intergenic | 15.0% |
| !! | TAGTAATATATATATGTTAG+AGG | + | chr1_2:12205414-12205433 | Msa0056560:intron | 15.0% |
| !!! | AAAGATCTGTAATTTTCTAA+GGG | + | chr1_2:12203803-12203822 | Msa0056560:intron | 20.0% |
| !! | TATTTCTTCTATCGAATATT+AGG | - | chr1_2:12203846-12203865 | None:intergenic | 20.0% |
| !! | TTCATAATATATCTTGGAAA+TGG | - | chr1_2:12203885-12203904 | None:intergenic | 20.0% |
| !! | TAAGCATTCATAATATATCT+TGG | - | chr1_2:12203891-12203910 | None:intergenic | 20.0% |
| !! | AAGATATATTATGAATGCTT+AGG | + | chr1_2:12203890-12203909 | Msa0056560:intron | 20.0% |
| !! | TGAGAAATACTGTTAAAATT+TGG | + | chr1_2:12204127-12204146 | Msa0056560:intron | 20.0% |
| !!! | TTTTGAACTAAAAATTGGAA+TGG | - | chr1_2:12204265-12204284 | None:intergenic | 20.0% |
| !!! | TGTTCTTTTGAACTAAAAAT+TGG | - | chr1_2:12204270-12204289 | None:intergenic | 20.0% |
| !! | AGAATTTCAAAAGTTTCTAA+AGG | + | chr1_2:12204562-12204581 | Msa0056560:intron | 20.0% |
| !!! | TCATGATATTTTAACTCTAT+GGG | + | chr1_2:12204634-12204653 | Msa0056560:intron | 20.0% |
| !!! | TATTTTGAACATGATATTGA+AGG | + | chr1_2:12205024-12205043 | Msa0056560:intron | 20.0% |
| !!! | ATATATATGTTAGAGGTATT+TGG | + | chr1_2:12205421-12205440 | Msa0056560:intron | 20.0% |
| !! | ACAAAGTTGGATATATAAAT+TGG | + | chr1_2:12205605-12205624 | Msa0056560:CDS | 20.0% |
| !! | ATCATTATATTCCTCAAAAA+GGG | - | chr1_2:12205701-12205720 | None:intergenic | 20.0% |
| !! | AGAAAGATAAATTGCTTAAA+AGG | - | chr1_2:12206310-12206329 | None:intergenic | 20.0% |
| !! | TGTTTCATAGTTTTCATGTT+AGG | + | chr1_2:12203427-12203446 | Msa0056560:intron | 25.0% |
| ! | AAATTCTCAATATCGTTGTA+AGG | - | chr1_2:12203555-12203574 | None:intergenic | 25.0% |
| !!! | ACTCGTTTTTATAAAATGCA+GGG | - | chr1_2:12203678-12203697 | None:intergenic | 25.0% |
| !! | TACCTACCTTTTATAAAAAC+GGG | - | chr1_2:12203742-12203761 | None:intergenic | 25.0% |
| !! | CTACCTACCTTTTATAAAAA+CGG | - | chr1_2:12203743-12203762 | None:intergenic | 25.0% |
| !! | GAAAGATCTGTAATTTTCTA+AGG | + | chr1_2:12203802-12203821 | Msa0056560:intron | 25.0% |
| ! | GTATACACATTCAAAACAAA+AGG | - | chr1_2:12204059-12204078 | None:intergenic | 25.0% |
| ! | TTTAACAGTATTTCTCATTG+AGG | - | chr1_2:12204124-12204143 | None:intergenic | 25.0% |
| !! | TAAGTTAGTCTCAATATACT+TGG | - | chr1_2:12204238-12204257 | None:intergenic | 25.0% |
| ! | TAACAATACTAGTGTATCAT+CGG | + | chr1_2:12204367-12204386 | Msa0056560:CDS | 25.0% |
| ! | TACAAATGAAATAGGAATGT+CGG | - | chr1_2:12204534-12204553 | None:intergenic | 25.0% |
| ! | TCATTCTCTACAAATGAAAT+AGG | - | chr1_2:12204542-12204561 | None:intergenic | 25.0% |
| !!! | CTCATGATATTTTAACTCTA+TGG | + | chr1_2:12204633-12204652 | Msa0056560:intron | 25.0% |
| ! | CCAGTTATTATCAATAAAGT+GGG | - | chr1_2:12204771-12204790 | None:intergenic | 25.0% |
| ! | TCCAGTTATTATCAATAAAG+TGG | - | chr1_2:12204772-12204791 | None:intergenic | 25.0% |
| ! | CAAGAAAAAATTGAAAGTGA+AGG | + | chr1_2:12205151-12205170 | Msa0056560:CDS | 25.0% |
| ! | TCATGAAAGATCTTCAAAAA+TGG | - | chr1_2:12205358-12205377 | None:intergenic | 25.0% |
| ! | TATATTACTAGTAGCATTAG+AGG | - | chr1_2:12205404-12205423 | None:intergenic | 25.0% |
| ! | ACTGTATAGCTATAATGATA+AGG | + | chr1_2:12205494-12205513 | Msa0056560:intron | 25.0% |
| !!! | TCAGATTTTTAATTCAGTTG+AGG | + | chr1_2:12205636-12205655 | Msa0056560:CDS | 25.0% |
| ! | CATCATTATATTCCTCAAAA+AGG | - | chr1_2:12205702-12205721 | None:intergenic | 25.0% |
| !!! | CTTTTTGAGGAATATAATGA+TGG | + | chr1_2:12205700-12205719 | Msa0056560:CDS | 25.0% |
| ! | ATCTGAGCTAAATAAGTATT+TGG | + | chr1_2:12205831-12205850 | Msa0056560:intron | 25.0% |
| ! | AGGATTTGGATATCTTAAAT+TGG | + | chr1_2:12205875-12205894 | Msa0056560:intron | 25.0% |
| ! | ATTTGGATATCTTAAATTGG+TGG | + | chr1_2:12205878-12205897 | Msa0056560:intron | 25.0% |
| !! | AGAAAACATGATGCTTATTT+TGG | + | chr1_2:12206139-12206158 | Msa0056560:intron | 25.0% |
| ! | TTGAACATGTAATATCTAGT+TGG | - | chr1_2:12206204-12206223 | None:intergenic | 25.0% |
| ! | AGAATCACTGTATTAATTCA+AGG | + | chr1_2:12206277-12206296 | Msa0056560:three_prime_UTR | 25.0% |
| ! | GATGCATTTTTGTGTAGTTA+AGG | + | chr1_2:12203371-12203390 | Msa0056560:intron | 30.0% |
| ! | CATAGTTTTCATGTTAGGTA+TGG | + | chr1_2:12203432-12203451 | Msa0056560:intron | 30.0% |
| ! | GTAATATTTAGGGTTGAAAG+TGG | + | chr1_2:12203581-12203600 | Msa0056560:intron | 30.0% |
| !! | CACTCGTTTTTATAAAATGC+AGG | - | chr1_2:12203679-12203698 | None:intergenic | 30.0% |
| ACAAATCATACAATGGCATA+TGG | - | chr1_2:12203959-12203978 | None:intergenic | 30.0% | |
| AATGCAGACAAATCATACAA+TGG | - | chr1_2:12203966-12203985 | None:intergenic | 30.0% | |
| ATGTACTAGAGTCATTGTTA+TGG | + | chr1_2:12204004-12204023 | Msa0056560:intron | 30.0% | |
| ATGTGTATACTTGATTGTGA+TGG | + | chr1_2:12204069-12204088 | Msa0056560:intron | 30.0% | |
| ! | GTTTCATTTTGAATGAGACA+AGG | + | chr1_2:12204205-12204224 | Msa0056560:intron | 30.0% |
| TCTCTTCAATAAAGTCATCT+TGG | - | chr1_2:12204319-12204338 | None:intergenic | 30.0% | |
| TGACTTTATTGAAGAGAATC+AGG | + | chr1_2:12204322-12204341 | Msa0056560:CDS | 30.0% | |
| ACATCTTAACAAGTTCATTC+TGG | - | chr1_2:12204502-12204521 | None:intergenic | 30.0% | |
| AGTGAGGAAACACTAAATTT+CGG | - | chr1_2:12204596-12204615 | None:intergenic | 30.0% | |
| ! | CCCACTTTATTGATAATAAC+TGG | + | chr1_2:12204768-12204787 | Msa0056560:intron | 30.0% |
| TCACTAGAGTATATGGAATA+TGG | + | chr1_2:12204836-12204855 | Msa0056560:intron | 30.0% | |
| ! | ATATGGAATATGGTATTGAG+TGG | + | chr1_2:12204846-12204865 | Msa0056560:intron | 30.0% |
| TTATGAGATTCGATGCTTAA+AGG | + | chr1_2:12204934-12204953 | Msa0056560:intron | 30.0% | |
| TTTGAACATGATATTGAAGG+AGG | + | chr1_2:12205027-12205046 | Msa0056560:intron | 30.0% | |
| TCAAATCCAGACAATATAGA+AGG | - | chr1_2:12205118-12205137 | None:intergenic | 30.0% | |
| TTCACATGGATATTGAAACT+AGG | + | chr1_2:12205179-12205198 | Msa0056560:CDS | 30.0% | |
| GAATTTGTCATATGAGATGT+TGG | + | chr1_2:12205204-12205223 | Msa0056560:CDS | 30.0% | |
| ! | ACTTTTTGTCATGTAACTCA+AGG | - | chr1_2:12205264-12205283 | None:intergenic | 30.0% |
| TATGTTCACGAGTTAGAAAA+GGG | + | chr1_2:12205283-12205302 | Msa0056560:intron | 30.0% | |
| !! | ATGTTAGAGGTATTTGGAAT+TGG | + | chr1_2:12205427-12205446 | Msa0056560:intron | 30.0% |
| GTATAGCTATAATGATAAGG+AGG | + | chr1_2:12205497-12205516 | Msa0056560:intron | 30.0% | |
| ! | TATAATCAGCATTGGGAAAA+TGG | + | chr1_2:12205523-12205542 | Msa0056560:intron | 30.0% |
| ! | ATAATCAGCATTGGGAAAAT+GGG | + | chr1_2:12205524-12205543 | Msa0056560:intron | 30.0% |
| ATATATCCAACTTTGTACCT+AGG | - | chr1_2:12205601-12205620 | None:intergenic | 30.0% | |
| !! | TTGTTTGAAATCCCTTTTTG+AGG | + | chr1_2:12205687-12205706 | Msa0056560:CDS | 30.0% |
| AAAGCACAATTTGATGAAGA+AGG | + | chr1_2:12205751-12205770 | Msa0056560:CDS | 30.0% | |
| ATTTGATGAAGAAGGTAAAG+AGG | + | chr1_2:12205759-12205778 | Msa0056560:CDS | 30.0% | |
| TGAGCTAAATAAGTATTTGG+AGG | + | chr1_2:12205834-12205853 | Msa0056560:intron | 30.0% | |
| !!! | CATGATGCTTATTTTGGAAA+AGG | + | chr1_2:12206145-12206164 | Msa0056560:intron | 30.0% |
| ! | TTTTTGTCTTTGTGCAGAAA+TGG | + | chr1_2:12206174-12206193 | Msa0056560:intron | 30.0% |
| AAGGATGCTTGTTCTTTATT+TGG | + | chr1_2:12206249-12206268 | Msa0056560:three_prime_UTR | 30.0% | |
| TACCTACAAATCCGTCTTTA+GGG | + | chr1_2:12203706-12203725 | Msa0056560:intron | 35.0% | |
| !! | GAAGCACCCGTTTTTATAAA+AGG | + | chr1_2:12203733-12203752 | Msa0056560:intron | 35.0% |
| !! | CACCCGTTTTTATAAAAGGT+AGG | + | chr1_2:12203737-12203756 | Msa0056560:intron | 35.0% |
| GTAAATCAATGACACCTTGT+GGG | - | chr1_2:12204032-12204051 | None:intergenic | 35.0% | |
| TGTAAATCAATGACACCTTG+TGG | - | chr1_2:12204033-12204052 | None:intergenic | 35.0% | |
| TTTACTGAAGAGCAAAGTGA+TGG | + | chr1_2:12204434-12204453 | Msa0056560:CDS | 35.0% | |
| ATTTGACAAGTTTGACCAAG+AGG | + | chr1_2:12204472-12204491 | Msa0056560:CDS | 35.0% | |
| AAATGAAATAGGAATGTCGG+TGG | - | chr1_2:12204531-12204550 | None:intergenic | 35.0% | |
| GTTAGACTAAAAATGCGACT+CGG | - | chr1_2:12204890-12204909 | None:intergenic | 35.0% | |
| CGAATCTCATAATCATATCG+AGG | - | chr1_2:12204926-12204945 | None:intergenic | 35.0% | |
| AAAGGAAAAGTTAATGACCC+TGG | + | chr1_2:12204952-12204971 | Msa0056560:intron | 35.0% | |
| GTAATCTCCTTTCAAAACGA+AGG | - | chr1_2:12204981-12205000 | None:intergenic | 35.0% | |
| TGTTCAAAATATGAGCGCAA+GGG | - | chr1_2:12205015-12205034 | None:intergenic | 35.0% | |
| ATGTTCAAAATATGAGCGCA+AGG | - | chr1_2:12205016-12205035 | None:intergenic | 35.0% | |
| GTGATGCAGTTCAATATACA+AGG | + | chr1_2:12205086-12205105 | Msa0056560:intron | 35.0% | |
| TCATCTCCTTCTATATTGTC+TGG | + | chr1_2:12205109-12205128 | Msa0056560:CDS | 35.0% | |
| AAGTGAAGGATATGTTCACA+TGG | + | chr1_2:12205165-12205184 | Msa0056560:CDS | 35.0% | |
| ACATGGATATTGAAACTAGG+TGG | + | chr1_2:12205182-12205201 | Msa0056560:CDS | 35.0% | |
| TTTGTCATATGAGATGTTGG+AGG | + | chr1_2:12205207-12205226 | Msa0056560:CDS | 35.0% | |
| GTATGTTCACGAGTTAGAAA+AGG | + | chr1_2:12205282-12205301 | Msa0056560:intron | 35.0% | |
| ATGTTCACGAGTTAGAAAAG+GGG | + | chr1_2:12205284-12205303 | Msa0056560:intron | 35.0% | |
| GTGTTCCTACATATGAAGAT+TGG | + | chr1_2:12205311-12205330 | Msa0056560:intron | 35.0% | |
| TGGTTCCAATCTTCATATGT+AGG | - | chr1_2:12205319-12205338 | None:intergenic | 35.0% | |
| TACATATGAAGATTGGAACC+AGG | + | chr1_2:12205318-12205337 | Msa0056560:intron | 35.0% | |
| ATGGTAACATTAAGTAAGCC+TGG | - | chr1_2:12205339-12205358 | None:intergenic | 35.0% | |
| TAGCTATACAGTGTACATTC+AGG | - | chr1_2:12205486-12205505 | None:intergenic | 35.0% | |
| ! | GAGGTACTATAATCAGCATT+GGG | + | chr1_2:12205516-12205535 | Msa0056560:intron | 35.0% |
| ! | TAATCAGCATTGGGAAAATG+GGG | + | chr1_2:12205525-12205544 | Msa0056560:intron | 35.0% |
| TTGCTCTTGTATTTGATCCT+AGG | + | chr1_2:12205581-12205600 | Msa0056560:intron | 35.0% | |
| TTTGATCCTAGGTACAAAGT+TGG | + | chr1_2:12205592-12205611 | Msa0056560:intron | 35.0% | |
| GTAAAGAGGATCCTTATAGT+TGG | + | chr1_2:12205773-12205792 | Msa0056560:CDS | 35.0% | |
| CGAAACTCATTCCAACTATA+AGG | - | chr1_2:12205787-12205806 | None:intergenic | 35.0% | |
| TAAGATATCCAAATCCTCAG+AGG | - | chr1_2:12205872-12205891 | None:intergenic | 35.0% | |
| ! | TGCACTTGGTAATAATGCAA+AGG | + | chr1_2:12205987-12206006 | Msa0056560:intron | 35.0% |
| TTGTTTGAACGCAACGAAAA+GGG | - | chr1_2:12206093-12206112 | None:intergenic | 35.0% | |
| GATTTGGAAAAGCTTAAGCA+AGG | + | chr1_2:12206114-12206133 | Msa0056560:CDS | 35.0% | |
| TCAATCATCAGGAACAGTAA+AGG | - | chr1_2:12206227-12206246 | None:intergenic | 35.0% | |
| CTGTTCCTGATGATTGATTA+AGG | + | chr1_2:12206230-12206249 | Msa0056560:exon | 35.0% | |
| AGCATCCTTAATCAATCATC+AGG | - | chr1_2:12206238-12206257 | None:intergenic | 35.0% | |
| GTACCTACAAATCCGTCTTT+AGG | + | chr1_2:12203705-12203724 | Msa0056560:intron | 40.0% | |
| ! | ATCCCTAAAGACGGATTTGT+AGG | - | chr1_2:12203711-12203730 | None:intergenic | 40.0% |
| GTGCTTCTAATCCCTAAAGA+CGG | - | chr1_2:12203720-12203739 | None:intergenic | 40.0% | |
| CTTGGAAATGGACGAGTATA+TGG | - | chr1_2:12203873-12203892 | None:intergenic | 40.0% | |
| TCATTGTTATGGTTCCCACA+AGG | + | chr1_2:12204015-12204034 | Msa0056560:intron | 40.0% | |
| AAGTCATCTTGGTCACTCAT+TGG | - | chr1_2:12204308-12204327 | None:intergenic | 40.0% | |
| ATAGAGATCGGTCAGATGAT+TGG | + | chr1_2:12204405-12204424 | Msa0056560:CDS | 40.0% | |
| TAGAGATCGGTCAGATGATT+GGG | + | chr1_2:12204406-12204425 | Msa0056560:CDS | 40.0% | |
| ! | AGCAAAGTGATGGAAGCAAA+AGG | + | chr1_2:12204444-12204463 | Msa0056560:CDS | 40.0% |
| AGCTTTCTTGCACAACATTG+TGG | + | chr1_2:12204680-12204699 | Msa0056560:intron | 40.0% | |
| CTAAACTTTCTTCCAACCGT+AGG | + | chr1_2:12204809-12204828 | Msa0056560:intron | 40.0% | |
| ATACTCTAGTGAACGACCTA+CGG | - | chr1_2:12204828-12204847 | None:intergenic | 40.0% | |
| AGGTCGTTCACTAGAGTATA+TGG | + | chr1_2:12204829-12204848 | Msa0056560:intron | 40.0% | |
| !! | TTTCAAAACGAAGGTGTCCA+GGG | - | chr1_2:12204972-12204991 | None:intergenic | 40.0% |
| !! | AGGCTGCTTTAAAGCATCAA+AGG | + | chr1_2:12205227-12205246 | Msa0056560:CDS | 40.0% |
| !! | GGCTGCTTTAAAGCATCAAA+GGG | + | chr1_2:12205228-12205247 | Msa0056560:CDS | 40.0% |
| !! | AAAGCATCAAAGGGCATTTG+AGG | + | chr1_2:12205237-12205256 | Msa0056560:CDS | 40.0% |
| !! | GGAGGTACTATAATCAGCAT+TGG | + | chr1_2:12205515-12205534 | Msa0056560:intron | 40.0% |
| ! | AATCAGCATTGGGAAAATGG+GGG | + | chr1_2:12205526-12205545 | Msa0056560:intron | 40.0% |
| ! | AGGCAGCTAATTTGAAACAG+AGG | + | chr1_2:12205656-12205675 | Msa0056560:CDS | 40.0% |
| CTAGCAATGTTTGCAAGGAT+TGG | - | chr1_2:12205925-12205944 | None:intergenic | 40.0% | |
| AAACATTGCTAGAGAGGCTT+TGG | + | chr1_2:12205933-12205952 | Msa0056560:intron | 40.0% | |
| ! | TGCACACATGATTGGCTATA+TGG | + | chr1_2:12206063-12206082 | Msa0056560:CDS | 40.0% |
| CTTGTTTGAACGCAACGAAA+AGG | - | chr1_2:12206094-12206113 | None:intergenic | 40.0% | |
| ! | CTTTTCGTTGCGTTCAAACA+AGG | + | chr1_2:12206092-12206111 | Msa0056560:CDS | 40.0% |
| GTTGCGTTCAAACAAGGATT+TGG | + | chr1_2:12206098-12206117 | Msa0056560:CDS | 40.0% | |
| GTATTGTTAGAGCCAAGTGC+TGG | - | chr1_2:12204356-12204375 | None:intergenic | 45.0% | |
| !! | TATCATCGGCTCGCTTTGTT+GGG | + | chr1_2:12204381-12204400 | Msa0056560:CDS | 45.0% |
| ! | GCTTTGTTGGGCATAGAGAT+CGG | + | chr1_2:12204393-12204412 | Msa0056560:CDS | 45.0% |
| TAGTGTTTCCTCACTCTCAC+AGG | + | chr1_2:12204601-12204620 | Msa0056560:intron | 45.0% | |
| !! | TTTGCCTCAGCATTGACACA+TGG | + | chr1_2:12204708-12204727 | Msa0056560:intron | 45.0% |
| AAGTCCATGTGTCAATGCTG+AGG | - | chr1_2:12204715-12204734 | None:intergenic | 45.0% | |
| TTGAGTGGTGCTTGAATGCT+TGG | + | chr1_2:12204861-12204880 | Msa0056560:intron | 45.0% | |
| TGAGTGGTGCTTGAATGCTT+GGG | + | chr1_2:12204862-12204881 | Msa0056560:intron | 45.0% | |
| !! | CTTTCAAAACGAAGGTGTCC+AGG | - | chr1_2:12204973-12204992 | None:intergenic | 45.0% |
| !! | CTGGACACCTTCGTTTTGAA+AGG | + | chr1_2:12204971-12204990 | Msa0056560:intron | 45.0% |
| TCACGAGTTAGAAAAGGGGA+AGG | + | chr1_2:12205288-12205307 | Msa0056560:intron | 45.0% | |
| CACGAGTTAGAAAAGGGGAA+GGG | + | chr1_2:12205289-12205308 | Msa0056560:intron | 45.0% | |
| ! | TAGCCAGTTGTGTCATTCCA+AGG | + | chr1_2:12205459-12205478 | Msa0056560:intron | 45.0% |
| ACAGTGTACATTCAGGTCCT+TGG | - | chr1_2:12205479-12205498 | None:intergenic | 45.0% | |
| ! | TACAGAGACCTCTGAGGATT+TGG | + | chr1_2:12205861-12205880 | Msa0056560:intron | 45.0% |
| CCTCTCTAGCAATGTTTGCA+AGG | - | chr1_2:12205930-12205949 | None:intergenic | 45.0% | |
| CCTTGCAAACATTGCTAGAG+AGG | + | chr1_2:12205927-12205946 | Msa0056560:intron | 45.0% | |
| AAGTGCACACTCAGACGTTA+GGG | - | chr1_2:12205974-12205993 | None:intergenic | 45.0% | |
| !! | AATTTATATTAGTAATATTT+AGG | + | chr1_2:12203570-12203589 | Msa0056560:intron | 5.0% |
| !! | ATTTATATTAGTAATATTTA+GGG | + | chr1_2:12203571-12203590 | Msa0056560:intron | 5.0% |
| !! | GTATCATCGGCTCGCTTTGT+TGG | + | chr1_2:12204380-12204399 | Msa0056560:CDS | 50.0% |
| GTTCATTCTGGCAAGCCTCT+TGG | - | chr1_2:12204490-12204509 | None:intergenic | 50.0% | |
| CAATGTAGCCTGTGAGAGTG+AGG | - | chr1_2:12204612-12204631 | None:intergenic | 50.0% | |
| CTCACTCTCACAGGCTACAT+TGG | + | chr1_2:12204610-12204629 | Msa0056560:intron | 50.0% | |
| TCTAGTGAACGACCTACGGT+TGG | - | chr1_2:12204824-12204843 | None:intergenic | 50.0% | |
| GGTCCTTGGAATGACACAAC+TGG | - | chr1_2:12205465-12205484 | None:intergenic | 50.0% | |
| GGAAGATACAGAGACCTCTG+AGG | + | chr1_2:12205855-12205874 | Msa0056560:intron | 50.0% | |
| TCAGACGTTAGGGTTGAGAC+AGG | - | chr1_2:12205964-12205983 | None:intergenic | 50.0% | |
| CAAGTGCACACTCAGACGTT+AGG | - | chr1_2:12205975-12205994 | None:intergenic | 50.0% | |
| CTAACGTCTGAGTGTGCACT+TGG | + | chr1_2:12205973-12205992 | Msa0056560:intron | 50.0% | |
| CGCTTGTCTGCACACATGAT+TGG | + | chr1_2:12206055-12206074 | Msa0056560:CDS | 50.0% | |
| CAGGTTGCTACTCCAGCACT+TGG | + | chr1_2:12204341-12204360 | Msa0056560:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 12203354 | 12206338 | 12203354 | ID=Msa0056560;Name=Msa0056560 |
| chr1_2 | mRNA | 12203354 | 12206338 | 12203354 | ID=Msa0056560-mRNA-1;Parent=Msa0056560;Name=Msa0056560-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0.2|0.16|0.33|0.4|0.33|6|92|283 |
| chr1_2 | exon | 12203354 | 12203362 | 12203354 | ID=Msa0056560-mRNA-1:exon:4718;Parent=Msa0056560-mRNA-1 |
| chr1_2 | exon | 12204278 | 12204519 | 12204278 | ID=Msa0056560-mRNA-1:exon:4719;Parent=Msa0056560-mRNA-1 |
| chr1_2 | exon | 12205087 | 12205281 | 12205087 | ID=Msa0056560-mRNA-1:exon:4720;Parent=Msa0056560-mRNA-1 |
| chr1_2 | exon | 12205603 | 12205845 | 12205603 | ID=Msa0056560-mRNA-1:exon:4721;Parent=Msa0056560-mRNA-1 |
| chr1_2 | exon | 12206029 | 12206135 | 12206029 | ID=Msa0056560-mRNA-1:exon:4722;Parent=Msa0056560-mRNA-1 |
| chr1_2 | exon | 12206191 | 12206338 | 12206191 | ID=Msa0056560-mRNA-1:exon:4723;Parent=Msa0056560-mRNA-1 |
| chr1_2 | CDS | 12203354 | 12203362 | 12203354 | ID=Msa0056560-mRNA-1:cds;Parent=Msa0056560-mRNA-1 |
| chr1_2 | CDS | 12204278 | 12204519 | 12204278 | ID=Msa0056560-mRNA-1:cds;Parent=Msa0056560-mRNA-1 |
| chr1_2 | CDS | 12205087 | 12205281 | 12205087 | ID=Msa0056560-mRNA-1:cds;Parent=Msa0056560-mRNA-1 |
| chr1_2 | CDS | 12205603 | 12205845 | 12205603 | ID=Msa0056560-mRNA-1:cds;Parent=Msa0056560-mRNA-1 |
| chr1_2 | CDS | 12206029 | 12206135 | 12206029 | ID=Msa0056560-mRNA-1:cds;Parent=Msa0056560-mRNA-1 |
| chr1_2 | CDS | 12206191 | 12206246 | 12206191 | ID=Msa0056560-mRNA-1:cds;Parent=Msa0056560-mRNA-1 |
| chr1_2 | three_prime_UTR | 12206247 | 12206338 | 12206247 | ID=Msa0056560-mRNA-1:three_prime_utr;Parent=Msa0056560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
