Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056730 | PNY08352.1 | 68.493 | 73 | 21 | 2 | 79 | 150 | 263 | 334 | 3.99e-20 | 102 |
| Msa0056730 | PNY08352.1 | 75.556 | 90 | 20 | 2 | 147 | 236 | 445 | 532 | 1.73e-32 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056730 | A0A2K3NZ93 | 68.493 | 73 | 21 | 2 | 79 | 150 | 263 | 334 | 1.90e-20 | 102 |
| Msa0056730 | A0A2K3NZ93 | 75.556 | 90 | 20 | 2 | 147 | 236 | 445 | 532 | 8.27e-33 | 137 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0056560 | Msa0056730 | 0.914655 | 1.484657e-84 | -8.615850e-47 |
| Msa0056670 | Msa0056730 | 0.865365 | 6.224591e-65 | -8.615850e-47 |
| Msa0056730 | Msa0691980 | 0.800908 | 1.155519e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0056730 | MtrunA17_Chr4g0052601 | 47.297 | 74 | 38 | 1 | 78 | 150 | 298 | 371 | 1.09e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 48 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGATGCTTGTTCTTTATT+TGG | 0.183079 | 1_2:+12391364 | Msa0056730:three_prime_UTR |
| CATCATTATATTCCTCAAAA+AGG | 0.217920 | 1_2:-12390793 | None:intergenic |
| AGAAAGATAAATTGCTTAAA+AGG | 0.227245 | 1_2:-12391422 | None:intergenic |
| CTGTTCCTGATGATTGATTA+AGG | 0.263570 | 1_2:+12391345 | Msa0056730:exon |
| ACAAAGTTGGATATATAAAT+TGG | 0.273647 | 1_2:+12390699 | Msa0056730:CDS |
| TGCACACATGATTGGCTATA+TGG | 0.290733 | 1_2:+12391157 | Msa0056730:CDS |
| GTTGCGTTCAAACAAGGATT+TGG | 0.301184 | 1_2:+12391192 | Msa0056730:CDS |
| CGAAACTCATTCCAACTATA+AGG | 0.319764 | 1_2:-12390878 | None:intergenic |
| TGACTTTATTGAAGAGAATC+AGG | 0.331103 | 1_2:+12389416 | Msa0056730:CDS |
| ACATCTTAACAAGTTCATTC+TGG | 0.335369 | 1_2:-12389593 | None:intergenic |
| GTATCATCGGCTCGCTTTGT+TGG | 0.389838 | 1_2:+12389474 | Msa0056730:CDS |
| TATCATCGGCTCGCTTTGTT+GGG | 0.392928 | 1_2:+12389475 | Msa0056730:CDS |
| AGAATCACTGTATTAATTCA+AGG | 0.394977 | 1_2:+12391392 | Msa0056730:three_prime_UTR |
| TCATCTCCTTCTATATTGTC+TGG | 0.409357 | 1_2:+12390203 | Msa0056730:CDS |
| CGCTTGTCTGCACACATGAT+TGG | 0.415433 | 1_2:+12391149 | Msa0056730:CDS |
| TCAAATCCAGACAATATAGA+AGG | 0.422190 | 1_2:-12390209 | None:intergenic |
| TCTCTTCAATAAAGTCATCT+TGG | 0.424426 | 1_2:-12389410 | None:intergenic |
| CTTGTTTGAACGCAACGAAA+AGG | 0.433601 | 1_2:-12391185 | None:intergenic |
| ATAGAGATCGGTCAGATGAT+TGG | 0.447056 | 1_2:+12389499 | Msa0056730:CDS |
| TAGAGATCGGTCAGATGATT+GGG | 0.457439 | 1_2:+12389500 | Msa0056730:CDS |
| AAAGCATCAAAGGGCATTTG+AGG | 0.459348 | 1_2:+12390331 | Msa0056730:CDS |
| AGCATCCTTAATCAATCATC+AGG | 0.462149 | 1_2:-12391350 | None:intergenic |
| GAATTTGTCATATGAGATGT+TGG | 0.477507 | 1_2:+12390298 | Msa0056730:CDS |
| TTGTTTGAACGCAACGAAAA+GGG | 0.479809 | 1_2:-12391184 | None:intergenic |
| GTTCATTCTGGCAAGCCTCT+TGG | 0.483141 | 1_2:-12389581 | None:intergenic |
| GTAAAGAGGATCCTTATAGT+TGG | 0.505450 | 1_2:+12390867 | Msa0056730:CDS |
| TTTGATCCTAGGTACAAAGT+TGG | 0.507835 | 1_2:+12390686 | Msa0056730:intron |
| AAGTCATCTTGGTCACTCAT+TGG | 0.513648 | 1_2:-12389399 | None:intergenic |
| AGGCTGCTTTAAAGCATCAA+AGG | 0.529819 | 1_2:+12390321 | Msa0056730:CDS |
| TTGAACATGTAATATCTAGT+TGG | 0.531858 | 1_2:-12391316 | None:intergenic |
| AAAGCACAATTTGATGAAGA+AGG | 0.531971 | 1_2:+12390845 | Msa0056730:CDS |
| GCTTTGTTGGGCATAGAGAT+CGG | 0.532380 | 1_2:+12389487 | Msa0056730:CDS |
| GGCTGCTTTAAAGCATCAAA+GGG | 0.533188 | 1_2:+12390322 | Msa0056730:CDS |
| GTATTGTTAGAGCCAAGTGC+TGG | 0.534057 | 1_2:-12389447 | None:intergenic |
| CAGGTTGCTACTCCAGCACT+TGG | 0.535820 | 1_2:+12389435 | Msa0056730:CDS |
| TAACAATACTAGTGTATCAT+CGG | 0.549701 | 1_2:+12389461 | Msa0056730:CDS |
| TCAATCATCAGGAACAGTAA+AGG | 0.554250 | 1_2:-12391339 | None:intergenic |
| AGCAAAGTGATGGAAGCAAA+AGG | 0.557939 | 1_2:+12389538 | Msa0056730:CDS |
| ATTTGATGAAGAAGGTAAAG+AGG | 0.563809 | 1_2:+12390853 | Msa0056730:CDS |
| ATTTGACAAGTTTGACCAAG+AGG | 0.565281 | 1_2:+12389566 | Msa0056730:CDS |
| AAGTGAAGGATATGTTTACA+TGG | 0.574428 | 1_2:+12390259 | Msa0056730:CDS |
| TTTACATGGATATTGAAACT+AGG | 0.588702 | 1_2:+12390273 | Msa0056730:CDS |
| TTTACTGAAGAGCAAAGTGA+TGG | 0.596882 | 1_2:+12389528 | Msa0056730:CDS |
| AGGCAGCTAATTTGAAACAG+AGG | 0.598299 | 1_2:+12390750 | Msa0056730:CDS |
| GTGATGCAGTTCAATATACA+AGG | 0.610197 | 1_2:+12390180 | Msa0056730:intron |
| GATTTGGAAAAGCTTAAGCA+AGG | 0.625887 | 1_2:+12391208 | Msa0056730:CDS |
| TTTGTCATATGAGATGTTGG+AGG | 0.654353 | 1_2:+12390301 | Msa0056730:CDS |
| ACATGGATATTGAAACTAGG+TGG | 0.659888 | 1_2:+12390276 | Msa0056730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAATTATACAAGTTAG+TGG | - | chr1_2:12388615-12388634 | None:intergenic | 15.0% |
| !!! | AATTGACAAATTTTTTATTG+AGG | + | chr1_2:12388865-12388884 | Msa0056730:intron | 15.0% |
| !!! | AAATGAAACTTTATTTTACT+TGG | - | chr1_2:12389288-12389307 | None:intergenic | 15.0% |
| !! | TAGTAATATATATATGTTAG+AGG | + | chr1_2:12390508-12390527 | Msa0056730:intron | 15.0% |
| !!! | AAAGATCTGTAATTTTCTAA+GGG | + | chr1_2:12388897-12388916 | Msa0056730:intron | 20.0% |
| !! | TATTTCTTCTATCGAATATT+AGG | - | chr1_2:12388940-12388959 | None:intergenic | 20.0% |
| !! | TTCATAATATATCTTGGAAA+TGG | - | chr1_2:12388979-12388998 | None:intergenic | 20.0% |
| !! | TAAGCATTCATAATATATCT+TGG | - | chr1_2:12388985-12389004 | None:intergenic | 20.0% |
| !! | AAGATATATTATGAATGCTT+AGG | + | chr1_2:12388984-12389003 | Msa0056730:intron | 20.0% |
| !! | TGAGAAATACTGTTAAAATT+TGG | + | chr1_2:12389221-12389240 | Msa0056730:intron | 20.0% |
| !!! | TTTTGAACTAAAAATTGGAA+TGG | - | chr1_2:12389359-12389378 | None:intergenic | 20.0% |
| !!! | TGTTCTTTTGAACTAAAAAT+TGG | - | chr1_2:12389364-12389383 | None:intergenic | 20.0% |
| !! | AGAATTTCAAAAGTTTCTAA+AGG | + | chr1_2:12389656-12389675 | Msa0056730:intron | 20.0% |
| !!! | TCATGATATTTTAACTCTAT+GGG | + | chr1_2:12389728-12389747 | Msa0056730:intron | 20.0% |
| !!! | TATTTTGAACATGATATTGA+AGG | + | chr1_2:12390118-12390137 | Msa0056730:intron | 20.0% |
| !!! | ATATATATGTTAGAGGTATT+TGG | + | chr1_2:12390515-12390534 | Msa0056730:intron | 20.0% |
| !! | ACAAAGTTGGATATATAAAT+TGG | + | chr1_2:12390699-12390718 | Msa0056730:CDS | 20.0% |
| !! | ATCATTATATTCCTCAAAAA+GGG | - | chr1_2:12390795-12390814 | None:intergenic | 20.0% |
| !! | AGAAAGATAAATTGCTTAAA+AGG | - | chr1_2:12391425-12391444 | None:intergenic | 20.0% |
| !! | TGTTTCATAGTTTTCATGTT+AGG | + | chr1_2:12388521-12388540 | Msa0056730:intron | 25.0% |
| ! | AAATTCTCAATATCGTTGTA+AGG | - | chr1_2:12388649-12388668 | None:intergenic | 25.0% |
| !!! | ACTCGTTTTTATAAAATGCA+GGG | - | chr1_2:12388772-12388791 | None:intergenic | 25.0% |
| !! | TACCTACCTTTTATAAAAAC+GGG | - | chr1_2:12388836-12388855 | None:intergenic | 25.0% |
| !! | CTACCTACCTTTTATAAAAA+CGG | - | chr1_2:12388837-12388856 | None:intergenic | 25.0% |
| !! | GAAAGATCTGTAATTTTCTA+AGG | + | chr1_2:12388896-12388915 | Msa0056730:intron | 25.0% |
| ! | GTATACACATTCAAAACAAA+AGG | - | chr1_2:12389153-12389172 | None:intergenic | 25.0% |
| ! | TTTAACAGTATTTCTCATTG+AGG | - | chr1_2:12389218-12389237 | None:intergenic | 25.0% |
| !! | TAAGTTAGTCTCAATATACT+TGG | - | chr1_2:12389332-12389351 | None:intergenic | 25.0% |
| ! | TAACAATACTAGTGTATCAT+CGG | + | chr1_2:12389461-12389480 | Msa0056730:CDS | 25.0% |
| ! | TACAAATGAAATAGGAATGT+CGG | - | chr1_2:12389628-12389647 | None:intergenic | 25.0% |
| ! | TCATTCTCTACAAATGAAAT+AGG | - | chr1_2:12389636-12389655 | None:intergenic | 25.0% |
| !!! | CTCATGATATTTTAACTCTA+TGG | + | chr1_2:12389727-12389746 | Msa0056730:intron | 25.0% |
| ! | CCAGTTATTATCAATAAAGT+GGG | - | chr1_2:12389865-12389884 | None:intergenic | 25.0% |
| ! | TCCAGTTATTATCAATAAAG+TGG | - | chr1_2:12389866-12389885 | None:intergenic | 25.0% |
| ! | CAAGAAAAAATTGAAAGTGA+AGG | + | chr1_2:12390245-12390264 | Msa0056730:CDS | 25.0% |
| ! | TTTACATGGATATTGAAACT+AGG | + | chr1_2:12390273-12390292 | Msa0056730:CDS | 25.0% |
| ! | TCATGAAAGATCTTCAAAAA+TGG | - | chr1_2:12390452-12390471 | None:intergenic | 25.0% |
| ! | TATATTACTAGTAGCATTAG+AGG | - | chr1_2:12390498-12390517 | None:intergenic | 25.0% |
| ! | ACTGTATAGCTATAATGATA+AGG | + | chr1_2:12390588-12390607 | Msa0056730:intron | 25.0% |
| !!! | TCAGATTTTTAATTCAGTTG+AGG | + | chr1_2:12390730-12390749 | Msa0056730:CDS | 25.0% |
| ! | CATCATTATATTCCTCAAAA+AGG | - | chr1_2:12390796-12390815 | None:intergenic | 25.0% |
| !!! | CTTTTTGAGGAATATAATGA+TGG | + | chr1_2:12390794-12390813 | Msa0056730:CDS | 25.0% |
| ! | ATCTGAGCTAAATAAGTATT+TGG | + | chr1_2:12390925-12390944 | Msa0056730:intron | 25.0% |
| ! | AGGATTTGGATATCTTAAAT+TGG | + | chr1_2:12390969-12390988 | Msa0056730:intron | 25.0% |
| ! | ATTTGGATATCTTAAATTGG+TGG | + | chr1_2:12390972-12390991 | Msa0056730:intron | 25.0% |
| !! | AGAAAACATGATGCTTATTT+TGG | + | chr1_2:12391233-12391252 | Msa0056730:intron | 25.0% |
| ! | TTGAACATGTAATATCTAGT+TGG | - | chr1_2:12391319-12391338 | None:intergenic | 25.0% |
| ! | AGAATCACTGTATTAATTCA+AGG | + | chr1_2:12391392-12391411 | Msa0056730:three_prime_UTR | 25.0% |
| ! | GATGCATTTTTGTGTAGTTA+AGG | + | chr1_2:12388465-12388484 | Msa0056730:intron | 30.0% |
| ! | CATAGTTTTCATGTTAGGTA+TGG | + | chr1_2:12388526-12388545 | Msa0056730:intron | 30.0% |
| ! | GTAATATTTAGGGTTGAAAG+TGG | + | chr1_2:12388675-12388694 | Msa0056730:intron | 30.0% |
| !! | CACTCGTTTTTATAAAATGC+AGG | - | chr1_2:12388773-12388792 | None:intergenic | 30.0% |
| ACAAATCATACAATGGCATA+TGG | - | chr1_2:12389053-12389072 | None:intergenic | 30.0% | |
| AATGCAGACAAATCATACAA+TGG | - | chr1_2:12389060-12389079 | None:intergenic | 30.0% | |
| ATGTACTAGAGTCATTGTTA+TGG | + | chr1_2:12389098-12389117 | Msa0056730:intron | 30.0% | |
| ATGTGTATACTTGATTGTGA+TGG | + | chr1_2:12389163-12389182 | Msa0056730:intron | 30.0% | |
| ! | GTTTCATTTTGAATGAGACA+AGG | + | chr1_2:12389299-12389318 | Msa0056730:intron | 30.0% |
| TCTCTTCAATAAAGTCATCT+TGG | - | chr1_2:12389413-12389432 | None:intergenic | 30.0% | |
| TGACTTTATTGAAGAGAATC+AGG | + | chr1_2:12389416-12389435 | Msa0056730:CDS | 30.0% | |
| ACATCTTAACAAGTTCATTC+TGG | - | chr1_2:12389596-12389615 | None:intergenic | 30.0% | |
| AGTGAGGAAACACTAAATTT+CGG | - | chr1_2:12389690-12389709 | None:intergenic | 30.0% | |
| ! | CCCACTTTATTGATAATAAC+TGG | + | chr1_2:12389862-12389881 | Msa0056730:intron | 30.0% |
| TCACTAGAGTATATGGAATA+TGG | + | chr1_2:12389930-12389949 | Msa0056730:intron | 30.0% | |
| ! | ATATGGAATATGGTATTGAG+TGG | + | chr1_2:12389940-12389959 | Msa0056730:intron | 30.0% |
| TTATGAGATTCGATGCTTAA+AGG | + | chr1_2:12390028-12390047 | Msa0056730:intron | 30.0% | |
| TTTGAACATGATATTGAAGG+AGG | + | chr1_2:12390121-12390140 | Msa0056730:intron | 30.0% | |
| TCAAATCCAGACAATATAGA+AGG | - | chr1_2:12390212-12390231 | None:intergenic | 30.0% | |
| AAGTGAAGGATATGTTTACA+TGG | + | chr1_2:12390259-12390278 | Msa0056730:CDS | 30.0% | |
| GAATTTGTCATATGAGATGT+TGG | + | chr1_2:12390298-12390317 | Msa0056730:CDS | 30.0% | |
| ! | ACTTTTTGTCATGTAACTCA+AGG | - | chr1_2:12390358-12390377 | None:intergenic | 30.0% |
| TATGTTCACGAGTTAGAAAA+GGG | + | chr1_2:12390377-12390396 | Msa0056730:intron | 30.0% | |
| !! | ATGTTAGAGGTATTTGGAAT+TGG | + | chr1_2:12390521-12390540 | Msa0056730:intron | 30.0% |
| GTATAGCTATAATGATAAGG+AGG | + | chr1_2:12390591-12390610 | Msa0056730:intron | 30.0% | |
| ! | TATAATCAGCATTGGGAAAA+TGG | + | chr1_2:12390617-12390636 | Msa0056730:intron | 30.0% |
| ! | ATAATCAGCATTGGGAAAAT+GGG | + | chr1_2:12390618-12390637 | Msa0056730:intron | 30.0% |
| ATATATCCAACTTTGTACCT+AGG | - | chr1_2:12390695-12390714 | None:intergenic | 30.0% | |
| !! | TTGTTTGAAATCCCTTTTTG+AGG | + | chr1_2:12390781-12390800 | Msa0056730:CDS | 30.0% |
| AAAGCACAATTTGATGAAGA+AGG | + | chr1_2:12390845-12390864 | Msa0056730:CDS | 30.0% | |
| ATTTGATGAAGAAGGTAAAG+AGG | + | chr1_2:12390853-12390872 | Msa0056730:CDS | 30.0% | |
| TGAGCTAAATAAGTATTTGG+AGG | + | chr1_2:12390928-12390947 | Msa0056730:intron | 30.0% | |
| !!! | CATGATGCTTATTTTGGAAA+AGG | + | chr1_2:12391239-12391258 | Msa0056730:intron | 30.0% |
| ! | TTTTTGTCTTTGTGCAGAAA+TGG | + | chr1_2:12391289-12391308 | Msa0056730:intron | 30.0% |
| AAGGATGCTTGTTCTTTATT+TGG | + | chr1_2:12391364-12391383 | Msa0056730:three_prime_UTR | 30.0% | |
| TACCTACAAATCCGTCTTTA+GGG | + | chr1_2:12388800-12388819 | Msa0056730:intron | 35.0% | |
| !! | GAAGCACCCGTTTTTATAAA+AGG | + | chr1_2:12388827-12388846 | Msa0056730:intron | 35.0% |
| !! | CACCCGTTTTTATAAAAGGT+AGG | + | chr1_2:12388831-12388850 | Msa0056730:intron | 35.0% |
| GTAAATCAATGACACCTTGT+GGG | - | chr1_2:12389126-12389145 | None:intergenic | 35.0% | |
| TGTAAATCAATGACACCTTG+TGG | - | chr1_2:12389127-12389146 | None:intergenic | 35.0% | |
| TTTACTGAAGAGCAAAGTGA+TGG | + | chr1_2:12389528-12389547 | Msa0056730:CDS | 35.0% | |
| ATTTGACAAGTTTGACCAAG+AGG | + | chr1_2:12389566-12389585 | Msa0056730:CDS | 35.0% | |
| AAATGAAATAGGAATGTCGG+TGG | - | chr1_2:12389625-12389644 | None:intergenic | 35.0% | |
| GTTAGACTAAAAATGCGACT+CGG | - | chr1_2:12389984-12390003 | None:intergenic | 35.0% | |
| CGAATCTCATAATCATATCG+AGG | - | chr1_2:12390020-12390039 | None:intergenic | 35.0% | |
| AAAGGAAAAGTTAATGACCC+TGG | + | chr1_2:12390046-12390065 | Msa0056730:intron | 35.0% | |
| GTAATCTCCTTTCAAAACGA+AGG | - | chr1_2:12390075-12390094 | None:intergenic | 35.0% | |
| TGTTCAAAATATGAGCGCAA+GGG | - | chr1_2:12390109-12390128 | None:intergenic | 35.0% | |
| ATGTTCAAAATATGAGCGCA+AGG | - | chr1_2:12390110-12390129 | None:intergenic | 35.0% | |
| GTGATGCAGTTCAATATACA+AGG | + | chr1_2:12390180-12390199 | Msa0056730:intron | 35.0% | |
| TCATCTCCTTCTATATTGTC+TGG | + | chr1_2:12390203-12390222 | Msa0056730:CDS | 35.0% | |
| ACATGGATATTGAAACTAGG+TGG | + | chr1_2:12390276-12390295 | Msa0056730:CDS | 35.0% | |
| TTTGTCATATGAGATGTTGG+AGG | + | chr1_2:12390301-12390320 | Msa0056730:CDS | 35.0% | |
| GTATGTTCACGAGTTAGAAA+AGG | + | chr1_2:12390376-12390395 | Msa0056730:intron | 35.0% | |
| ATGTTCACGAGTTAGAAAAG+GGG | + | chr1_2:12390378-12390397 | Msa0056730:intron | 35.0% | |
| GTGTTCCTACATATGAAGAT+TGG | + | chr1_2:12390405-12390424 | Msa0056730:intron | 35.0% | |
| TGGTTCCAATCTTCATATGT+AGG | - | chr1_2:12390413-12390432 | None:intergenic | 35.0% | |
| TACATATGAAGATTGGAACC+AGG | + | chr1_2:12390412-12390431 | Msa0056730:intron | 35.0% | |
| ATGGTAACATTAAGTAAGCC+TGG | - | chr1_2:12390433-12390452 | None:intergenic | 35.0% | |
| TAGCTATACAGTGTACATTC+AGG | - | chr1_2:12390580-12390599 | None:intergenic | 35.0% | |
| ! | GAGGTACTATAATCAGCATT+GGG | + | chr1_2:12390610-12390629 | Msa0056730:intron | 35.0% |
| ! | TAATCAGCATTGGGAAAATG+GGG | + | chr1_2:12390619-12390638 | Msa0056730:intron | 35.0% |
| TTGCTCTTGTATTTGATCCT+AGG | + | chr1_2:12390675-12390694 | Msa0056730:intron | 35.0% | |
| TTTGATCCTAGGTACAAAGT+TGG | + | chr1_2:12390686-12390705 | Msa0056730:intron | 35.0% | |
| GTAAAGAGGATCCTTATAGT+TGG | + | chr1_2:12390867-12390886 | Msa0056730:CDS | 35.0% | |
| CGAAACTCATTCCAACTATA+AGG | - | chr1_2:12390881-12390900 | None:intergenic | 35.0% | |
| TAAGATATCCAAATCCTCAG+AGG | - | chr1_2:12390966-12390985 | None:intergenic | 35.0% | |
| ! | TGCACTTGGTAATAATGCAA+AGG | + | chr1_2:12391081-12391100 | Msa0056730:intron | 35.0% |
| TTGTTTGAACGCAACGAAAA+GGG | - | chr1_2:12391187-12391206 | None:intergenic | 35.0% | |
| GATTTGGAAAAGCTTAAGCA+AGG | + | chr1_2:12391208-12391227 | Msa0056730:CDS | 35.0% | |
| TCAATCATCAGGAACAGTAA+AGG | - | chr1_2:12391342-12391361 | None:intergenic | 35.0% | |
| CTGTTCCTGATGATTGATTA+AGG | + | chr1_2:12391345-12391364 | Msa0056730:exon | 35.0% | |
| AGCATCCTTAATCAATCATC+AGG | - | chr1_2:12391353-12391372 | None:intergenic | 35.0% | |
| GTACCTACAAATCCGTCTTT+AGG | + | chr1_2:12388799-12388818 | Msa0056730:intron | 40.0% | |
| ! | ATCCCTAAAGACGGATTTGT+AGG | - | chr1_2:12388805-12388824 | None:intergenic | 40.0% |
| GTGCTTCTAATCCCTAAAGA+CGG | - | chr1_2:12388814-12388833 | None:intergenic | 40.0% | |
| CTTGGAAATGGACGAGTATA+TGG | - | chr1_2:12388967-12388986 | None:intergenic | 40.0% | |
| TCATTGTTATGGTTCCCACA+AGG | + | chr1_2:12389109-12389128 | Msa0056730:intron | 40.0% | |
| AAGTCATCTTGGTCACTCAT+TGG | - | chr1_2:12389402-12389421 | None:intergenic | 40.0% | |
| ATAGAGATCGGTCAGATGAT+TGG | + | chr1_2:12389499-12389518 | Msa0056730:CDS | 40.0% | |
| TAGAGATCGGTCAGATGATT+GGG | + | chr1_2:12389500-12389519 | Msa0056730:CDS | 40.0% | |
| ! | AGCAAAGTGATGGAAGCAAA+AGG | + | chr1_2:12389538-12389557 | Msa0056730:CDS | 40.0% |
| AGCTTTCTTGCACAACATTG+TGG | + | chr1_2:12389774-12389793 | Msa0056730:intron | 40.0% | |
| CTAAACTTTCTTCCAACCGT+AGG | + | chr1_2:12389903-12389922 | Msa0056730:intron | 40.0% | |
| ATACTCTAGTGAACGACCTA+CGG | - | chr1_2:12389922-12389941 | None:intergenic | 40.0% | |
| AGGTCGTTCACTAGAGTATA+TGG | + | chr1_2:12389923-12389942 | Msa0056730:intron | 40.0% | |
| !! | TTTCAAAACGAAGGTGTCCA+GGG | - | chr1_2:12390066-12390085 | None:intergenic | 40.0% |
| !! | AGGCTGCTTTAAAGCATCAA+AGG | + | chr1_2:12390321-12390340 | Msa0056730:CDS | 40.0% |
| !! | GGCTGCTTTAAAGCATCAAA+GGG | + | chr1_2:12390322-12390341 | Msa0056730:CDS | 40.0% |
| !! | AAAGCATCAAAGGGCATTTG+AGG | + | chr1_2:12390331-12390350 | Msa0056730:CDS | 40.0% |
| !! | GGAGGTACTATAATCAGCAT+TGG | + | chr1_2:12390609-12390628 | Msa0056730:intron | 40.0% |
| ! | AATCAGCATTGGGAAAATGG+GGG | + | chr1_2:12390620-12390639 | Msa0056730:intron | 40.0% |
| ! | AGGCAGCTAATTTGAAACAG+AGG | + | chr1_2:12390750-12390769 | Msa0056730:CDS | 40.0% |
| CTAGCAATGTTTGCAAGGAT+TGG | - | chr1_2:12391019-12391038 | None:intergenic | 40.0% | |
| AAACATTGCTAGAGAGGCTT+TGG | + | chr1_2:12391027-12391046 | Msa0056730:intron | 40.0% | |
| ! | TGCACACATGATTGGCTATA+TGG | + | chr1_2:12391157-12391176 | Msa0056730:CDS | 40.0% |
| CTTGTTTGAACGCAACGAAA+AGG | - | chr1_2:12391188-12391207 | None:intergenic | 40.0% | |
| ! | CTTTTCGTTGCGTTCAAACA+AGG | + | chr1_2:12391186-12391205 | Msa0056730:CDS | 40.0% |
| GTTGCGTTCAAACAAGGATT+TGG | + | chr1_2:12391192-12391211 | Msa0056730:CDS | 40.0% | |
| GTATTGTTAGAGCCAAGTGC+TGG | - | chr1_2:12389450-12389469 | None:intergenic | 45.0% | |
| !! | TATCATCGGCTCGCTTTGTT+GGG | + | chr1_2:12389475-12389494 | Msa0056730:CDS | 45.0% |
| ! | GCTTTGTTGGGCATAGAGAT+CGG | + | chr1_2:12389487-12389506 | Msa0056730:CDS | 45.0% |
| TAGTGTTTCCTCACTCTCAC+AGG | + | chr1_2:12389695-12389714 | Msa0056730:intron | 45.0% | |
| !! | TTTGCCTCAGCATTGACACA+TGG | + | chr1_2:12389802-12389821 | Msa0056730:intron | 45.0% |
| AAGTCCATGTGTCAATGCTG+AGG | - | chr1_2:12389809-12389828 | None:intergenic | 45.0% | |
| TTGAGTGGTGCTTGAATGCT+TGG | + | chr1_2:12389955-12389974 | Msa0056730:intron | 45.0% | |
| TGAGTGGTGCTTGAATGCTT+GGG | + | chr1_2:12389956-12389975 | Msa0056730:intron | 45.0% | |
| !! | CTTTCAAAACGAAGGTGTCC+AGG | - | chr1_2:12390067-12390086 | None:intergenic | 45.0% |
| !! | CTGGACACCTTCGTTTTGAA+AGG | + | chr1_2:12390065-12390084 | Msa0056730:intron | 45.0% |
| TCACGAGTTAGAAAAGGGGA+AGG | + | chr1_2:12390382-12390401 | Msa0056730:intron | 45.0% | |
| CACGAGTTAGAAAAGGGGAA+GGG | + | chr1_2:12390383-12390402 | Msa0056730:intron | 45.0% | |
| ! | TAGCCAGTTGTGTCATTCCA+AGG | + | chr1_2:12390553-12390572 | Msa0056730:intron | 45.0% |
| ACAGTGTACATTCAGGTCCT+TGG | - | chr1_2:12390573-12390592 | None:intergenic | 45.0% | |
| ! | TACAGAGACCTCTGAGGATT+TGG | + | chr1_2:12390955-12390974 | Msa0056730:intron | 45.0% |
| CCTCTCTAGCAATGTTTGCA+AGG | - | chr1_2:12391024-12391043 | None:intergenic | 45.0% | |
| CCTTGCAAACATTGCTAGAG+AGG | + | chr1_2:12391021-12391040 | Msa0056730:intron | 45.0% | |
| AAGTGCACACTCAGACGTTA+GGG | - | chr1_2:12391068-12391087 | None:intergenic | 45.0% | |
| !! | AATTTATATTAGTAATATTT+AGG | + | chr1_2:12388664-12388683 | Msa0056730:intron | 5.0% |
| !! | ATTTATATTAGTAATATTTA+GGG | + | chr1_2:12388665-12388684 | Msa0056730:intron | 5.0% |
| !! | GTATCATCGGCTCGCTTTGT+TGG | + | chr1_2:12389474-12389493 | Msa0056730:CDS | 50.0% |
| GTTCATTCTGGCAAGCCTCT+TGG | - | chr1_2:12389584-12389603 | None:intergenic | 50.0% | |
| CAATGTAGCCTGTGAGAGTG+AGG | - | chr1_2:12389706-12389725 | None:intergenic | 50.0% | |
| CTCACTCTCACAGGCTACAT+TGG | + | chr1_2:12389704-12389723 | Msa0056730:intron | 50.0% | |
| TCTAGTGAACGACCTACGGT+TGG | - | chr1_2:12389918-12389937 | None:intergenic | 50.0% | |
| GGTCCTTGGAATGACACAAC+TGG | - | chr1_2:12390559-12390578 | None:intergenic | 50.0% | |
| GGAAGATACAGAGACCTCTG+AGG | + | chr1_2:12390949-12390968 | Msa0056730:intron | 50.0% | |
| TCAGACGTTAGGGTTGAGAC+AGG | - | chr1_2:12391058-12391077 | None:intergenic | 50.0% | |
| CAAGTGCACACTCAGACGTT+AGG | - | chr1_2:12391069-12391088 | None:intergenic | 50.0% | |
| CTAACGTCTGAGTGTGCACT+TGG | + | chr1_2:12391067-12391086 | Msa0056730:intron | 50.0% | |
| CGCTTGTCTGCACACATGAT+TGG | + | chr1_2:12391149-12391168 | Msa0056730:CDS | 50.0% | |
| CAGGTTGCTACTCCAGCACT+TGG | + | chr1_2:12389435-12389454 | Msa0056730:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 12388448 | 12391453 | 12388448 | ID=Msa0056730;Name=Msa0056730 |
| chr1_2 | mRNA | 12388448 | 12391453 | 12388448 | ID=Msa0056730-mRNA-1;Parent=Msa0056730;Name=Msa0056730-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0.2|0.16|0.33|0.4|0.33|6|92|283 |
| chr1_2 | exon | 12388448 | 12388456 | 12388448 | ID=Msa0056730-mRNA-1:exon:4842;Parent=Msa0056730-mRNA-1 |
| chr1_2 | exon | 12389372 | 12389613 | 12389372 | ID=Msa0056730-mRNA-1:exon:4843;Parent=Msa0056730-mRNA-1 |
| chr1_2 | exon | 12390181 | 12390375 | 12390181 | ID=Msa0056730-mRNA-1:exon:4844;Parent=Msa0056730-mRNA-1 |
| chr1_2 | exon | 12390697 | 12390939 | 12390697 | ID=Msa0056730-mRNA-1:exon:4845;Parent=Msa0056730-mRNA-1 |
| chr1_2 | exon | 12391123 | 12391229 | 12391123 | ID=Msa0056730-mRNA-1:exon:4846;Parent=Msa0056730-mRNA-1 |
| chr1_2 | exon | 12391306 | 12391453 | 12391306 | ID=Msa0056730-mRNA-1:exon:4847;Parent=Msa0056730-mRNA-1 |
| chr1_2 | CDS | 12388448 | 12388456 | 12388448 | ID=Msa0056730-mRNA-1:cds;Parent=Msa0056730-mRNA-1 |
| chr1_2 | CDS | 12389372 | 12389613 | 12389372 | ID=Msa0056730-mRNA-1:cds;Parent=Msa0056730-mRNA-1 |
| chr1_2 | CDS | 12390181 | 12390375 | 12390181 | ID=Msa0056730-mRNA-1:cds;Parent=Msa0056730-mRNA-1 |
| chr1_2 | CDS | 12390697 | 12390939 | 12390697 | ID=Msa0056730-mRNA-1:cds;Parent=Msa0056730-mRNA-1 |
| chr1_2 | CDS | 12391123 | 12391229 | 12391123 | ID=Msa0056730-mRNA-1:cds;Parent=Msa0056730-mRNA-1 |
| chr1_2 | CDS | 12391306 | 12391361 | 12391306 | ID=Msa0056730-mRNA-1:cds;Parent=Msa0056730-mRNA-1 |
| chr1_2 | three_prime_UTR | 12391362 | 12391453 | 12391362 | ID=Msa0056730-mRNA-1:three_prime_utr;Parent=Msa0056730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
