Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060860 | XP_013466403.1 | 96.793 | 343 | 11 | 0 | 1 | 343 | 1 | 343 | 0.0 | 696 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060860 | sp|P87055|YDJ7_SCHPO | 41.053 | 285 | 152 | 9 | 63 | 342 | 38 | 311 | 1.53e-63 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060860 | A0A072VQQ2 | 96.793 | 343 | 11 | 0 | 1 | 343 | 1 | 343 | 0.0 | 696 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0060860 | Msa0386040 | 0.802943 | 4.413613e-49 | -8.615850e-47 |
| Msa0060860 | Msa0683600 | 0.801290 | 9.652770e-49 | -8.615850e-47 |
| Msa0060860 | Msa0944610 | 0.829094 | 6.238712e-55 | -8.615850e-47 |
| Msa0060860 | Msa1454450 | 0.826875 | 2.134273e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060860 | MtrunA17_Chr1g0159241 | 96.793 | 343 | 11 | 0 | 1 | 343 | 1 | 343 | 0.0 | 696 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060860 | AT1G21370.2 | 67.353 | 340 | 100 | 6 | 10 | 343 | 8 | 342 | 3.88e-165 | 464 |
| Msa0060860 | AT1G21370.1 | 67.353 | 340 | 100 | 6 | 10 | 343 | 8 | 342 | 3.88e-165 | 464 |
Find 92 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAAATCGAAATCGGATTT+TGG | 0.097582 | 1_2:-18797141 | None:intergenic |
| CTGAACAAAGGTTCAATTTC+TGG | 0.136474 | 1_2:-18801789 | None:intergenic |
| GAAAGAGGATTCGTGGTATT+TGG | 0.173898 | 1_2:+18797470 | Msa0060860:CDS |
| AAAACAAGATCCTCTGAATT+TGG | 0.236366 | 1_2:+18796961 | Msa0060860:five_prime_UTR |
| TGAGAAATTGTTCATTGTTT+TGG | 0.241176 | 1_2:-18797082 | None:intergenic |
| TGTAAGGTTATTAAAATTCT+TGG | 0.252427 | 1_2:+18802065 | Msa0060860:three_prime_UTR |
| GCAAAAGAAGCTGCTTTAAA+AGG | 0.276996 | 1_2:+18801648 | Msa0060860:CDS |
| AGGAATTTGGTTATGGTTGC+TGG | 0.293711 | 1_2:+18797408 | Msa0060860:CDS |
| CACGGGAGTGCACCAGGATA+TGG | 0.294204 | 1_2:-18801828 | None:intergenic |
| ATGAAACTGTTGTTACATAT+TGG | 0.307070 | 1_2:+18802009 | Msa0060860:three_prime_UTR |
| ATCGCAATTTATATCTTAGA+TGG | 0.307811 | 1_2:-18796910 | None:intergenic |
| GGAGTGAGGCGCAGAGTTAT+TGG | 0.328099 | 1_2:+18797628 | Msa0060860:CDS |
| TGTCGGTTCCGAGAGCTTAC+TGG | 0.336134 | 1_2:+18799145 | Msa0060860:CDS |
| CGCTCAATTCCGTATCCTAA+TGG | 0.336584 | 1_2:+18801762 | Msa0060860:CDS |
| TGCTTTAAAAGGCGAGGAAT+TGG | 0.340117 | 1_2:+18801659 | Msa0060860:CDS |
| TTACTGCTATCTTTAACTTT+CGG | 0.357852 | 1_2:+18797288 | Msa0060860:CDS |
| AGGAGTTGGGATTGTTGATA+AGG | 0.365777 | 1_2:+18797548 | Msa0060860:CDS |
| TCAATTTCTGGACATCCATT+AGG | 0.366174 | 1_2:-18801777 | None:intergenic |
| GAAGCTGAGGAATTTGGTTA+TGG | 0.369677 | 1_2:+18797401 | Msa0060860:CDS |
| CAATTACGCGAAAACTGATC+TGG | 0.389611 | 1_2:+18797356 | Msa0060860:CDS |
| AAGCGATGCAATGGAATCAT+TGG | 0.393762 | 1_2:-18797055 | None:intergenic |
| TTGTGAGAAGATTGAGAAAG+AGG | 0.399905 | 1_2:+18797455 | Msa0060860:CDS |
| AATTGCGATTCCGTTCGGTT+TGG | 0.404393 | 1_2:+18796924 | Msa0060860:five_prime_UTR |
| GAGTGAGGCGCAGAGTTATT+GGG | 0.409514 | 1_2:+18797629 | Msa0060860:CDS |
| GTATGCGGGGAAAGATTTGT+AGG | 0.414428 | 1_2:-18797118 | None:intergenic |
| GGTTCGTTTGATTGTGGTTG+TGG | 0.417620 | 1_2:-18797175 | None:intergenic |
| ACTATTCATGCAACATTAAG+TGG | 0.418129 | 1_2:-18801923 | None:intergenic |
| AGCATATTGAGGAAGGAGTT+GGG | 0.423129 | 1_2:+18797535 | Msa0060860:CDS |
| GGCAGATTCTAAATCGAAAT+CGG | 0.423692 | 1_2:-18797148 | None:intergenic |
| GGTTATGGTTGCTGGTCATT+CGG | 0.428773 | 1_2:+18797416 | Msa0060860:CDS |
| ATATAAATTGCGATTCCGTT+CGG | 0.438656 | 1_2:+18796919 | Msa0060860:five_prime_UTR |
| CGAGGAAAGACGCGGGGCCG+AGG | 0.441720 | 1_2:+18797607 | Msa0060860:CDS |
| AATTCCTCAGCTTCGAAAAC+GGG | 0.444388 | 1_2:-18797392 | None:intergenic |
| GTTCGTTTGATTGTGGTTGT+GGG | 0.446381 | 1_2:-18797174 | None:intergenic |
| GTAAGGAAGAAAGTGTGAAA+TGG | 0.452628 | 1_2:+18799065 | Msa0060860:CDS |
| TACGGAATTGAGCGATGAAA+AGG | 0.457123 | 1_2:-18801753 | None:intergenic |
| AAATTCCTCAGCTTCGAAAA+CGG | 0.467036 | 1_2:-18797393 | None:intergenic |
| TGTGAAATGGAGAGCACTTA+CGG | 0.479325 | 1_2:+18799078 | Msa0060860:CDS |
| ATCTTCTATTTAGTGTCTGT+CGG | 0.488169 | 1_2:+18799128 | Msa0060860:CDS |
| AAGCATATTGAGGAAGGAGT+TGG | 0.489403 | 1_2:+18797534 | Msa0060860:CDS |
| ATTGTTGATAAGGATGAGAA+GGG | 0.491767 | 1_2:+18797558 | Msa0060860:CDS |
| TTTGATTGTGGTTGTGGGAA+TGG | 0.491995 | 1_2:-18797169 | None:intergenic |
| CGATTGGCTTTCCAGAGTCA+AGG | 0.498519 | 1_2:+18801592 | Msa0060860:CDS |
| TCAATTTGAAATCTTGTGAA+GGG | 0.501437 | 1_2:+18802106 | Msa0060860:three_prime_UTR |
| TGTGGACCAGCTCCATATCC+TGG | 0.503421 | 1_2:+18801816 | Msa0060860:CDS |
| GATTGTTGATAAGGATGAGA+AGG | 0.503975 | 1_2:+18797557 | Msa0060860:CDS |
| AGATTGAGAAAGAGGATTCG+TGG | 0.506178 | 1_2:+18797463 | Msa0060860:CDS |
| GAGAGTTATCAGAAGAATCC+TGG | 0.509383 | 1_2:+18797492 | Msa0060860:CDS |
| CATATCCTGGTGCACTCCCG+TGG | 0.512136 | 1_2:+18801829 | Msa0060860:CDS |
| TTCAATTTGAAATCTTGTGA+AGG | 0.516963 | 1_2:+18802105 | Msa0060860:three_prime_UTR |
| CATTCGGTTTATACGAGTAG+TGG | 0.518983 | 1_2:+18797432 | Msa0060860:CDS |
| TTATCAGAAGAATCCTGGTC+AGG | 0.520509 | 1_2:+18797497 | Msa0060860:CDS |
| TCTGGACATCCATTAGGATA+CGG | 0.527516 | 1_2:-18801771 | None:intergenic |
| AATCTACATCGATCTGCGAT+TGG | 0.533049 | 1_2:+18801576 | Msa0060860:CDS |
| GAGTCAAGGTTCTTCTACGC+TGG | 0.538718 | 1_2:+18801606 | Msa0060860:CDS |
| TAACTCTGCGCCTCACTCCT+CGG | 0.545516 | 1_2:-18797624 | None:intergenic |
| CACTCCCGTGGGCATAGTAG+TGG | 0.555298 | 1_2:+18801841 | Msa0060860:exon |
| TATGCCCACGGGAGTGCACC+AGG | 0.560758 | 1_2:-18801834 | None:intergenic |
| AGACGCGGGGCCGAGGAGTG+AGG | 0.561580 | 1_2:+18797614 | Msa0060860:CDS |
| AATTACGCGAAAACTGATCT+GGG | 0.563506 | 1_2:+18797357 | Msa0060860:CDS |
| ACGGAATTGAGCGATGAAAA+GGG | 0.567802 | 1_2:-18801752 | None:intergenic |
| CAATTTGAAATCTTGTGAAG+GGG | 0.573976 | 1_2:+18802107 | Msa0060860:three_prime_UTR |
| GCGTAGAAGAACCTTGACTC+TGG | 0.574118 | 1_2:-18801603 | None:intergenic |
| AATTCTTGGTGTTCTCAACA+TGG | 0.575720 | 1_2:+18802079 | Msa0060860:three_prime_UTR |
| TACGTTTGTGAAGCATATTG+AGG | 0.581660 | 1_2:+18797524 | Msa0060860:CDS |
| AACCACCACTACTATGCCCA+CGG | 0.585593 | 1_2:-18801846 | None:intergenic |
| ACAAACGTAGCAGCCTGACC+AGG | 0.587052 | 1_2:-18797510 | None:intergenic |
| TTTGTGAAGCATATTGAGGA+AGG | 0.587362 | 1_2:+18797528 | Msa0060860:CDS |
| TCCCGTGGGCATAGTAGTGG+TGG | 0.590022 | 1_2:+18801844 | Msa0060860:exon |
| GATAGGTGCCAGTAAGCTCT+CGG | 0.590265 | 1_2:-18799153 | None:intergenic |
| AGTGCACCAGGATATGGAGC+TGG | 0.590998 | 1_2:-18801822 | None:intergenic |
| CACTTACGGAAGAACATGCA+AGG | 0.592734 | 1_2:+18799092 | Msa0060860:CDS |
| GAACCTTTGTTCAGATACTG+TGG | 0.593101 | 1_2:+18801798 | Msa0060860:CDS |
| TTTGGTTTGAAGCGATGCAA+TGG | 0.593695 | 1_2:-18797064 | None:intergenic |
| CAATTCTCAAGAGATCCGTT+CGG | 0.594048 | 1_2:+18801690 | Msa0060860:CDS |
| ATTAGAAGATCCAAATTCAG+AGG | 0.595935 | 1_2:-18796971 | None:intergenic |
| AGCAGTAAAATAGCTACGAA+AGG | 0.605361 | 1_2:-18797273 | None:intergenic |
| AGAGATCCGTTCGGATGTCG+AGG | 0.610798 | 1_2:+18801699 | Msa0060860:CDS |
| TGTTTAGTGGTGGTGAGACG+AGG | 0.615572 | 1_2:+18797589 | Msa0060860:CDS |
| AGAAGCTGCTTTAAAAGGCG+AGG | 0.624803 | 1_2:+18801653 | Msa0060860:CDS |
| TTTCGCGTAATTGTTCAACT+GGG | 0.626851 | 1_2:-18797346 | None:intergenic |
| ACCACCACTACTATGCCCAC+GGG | 0.633137 | 1_2:-18801845 | None:intergenic |
| ATATCCTGGTGCACTCCCGT+GGG | 0.633994 | 1_2:+18801830 | Msa0060860:CDS |
| GGTGAGACGAGGAAAGACGC+GGG | 0.645521 | 1_2:+18797600 | Msa0060860:CDS |
| TGGTGAGACGAGGAAAGACG+CGG | 0.648676 | 1_2:+18797599 | Msa0060860:CDS |
| ATTGGGTCATCCAAACCGAA+CGG | 0.669842 | 1_2:-18796934 | None:intergenic |
| GGTCCACAGTATCTGAACAA+AGG | 0.677767 | 1_2:-18801801 | None:intergenic |
| AGTGAACCTCGACATCCGAA+CGG | 0.684513 | 1_2:-18801705 | None:intergenic |
| ACTTACGGAAGAACATGCAA+GGG | 0.692844 | 1_2:+18799093 | Msa0060860:CDS |
| GTGAGACGAGGAAAGACGCG+GGG | 0.694941 | 1_2:+18797601 | Msa0060860:CDS |
| GCAATGGAATCATTGGATCG+CGG | 0.698430 | 1_2:-18797048 | None:intergenic |
| AGTGTACACTAAAAGCATAG+AGG | 0.704692 | 1_2:+18801883 | Msa0060860:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATTATAAATTGAATGA+TGG | + | chr1_2:18801456-18801475 | Msa0060860:intron | 10.0% |
| !! | AAATAAATGTTTACTTGATA+TGG | + | chr1_2:18797983-18798002 | Msa0060860:intron | 15.0% |
| !! | CCATAATCAAATTAAAAAAA+TGG | - | chr1_2:18798160-18798179 | None:intergenic | 15.0% |
| !!! | CCATTTTTTTAATTTGATTA+TGG | + | chr1_2:18798157-18798176 | Msa0060860:intron | 15.0% |
| !!! | GAAATAGAAAGAATATTTTT+TGG | + | chr1_2:18798435-18798454 | Msa0060860:intron | 15.0% |
| !! | TAAAATAGGAAATAATGAAA+TGG | - | chr1_2:18798478-18798497 | None:intergenic | 15.0% |
| !!! | TTCTTTCTTTTAATTAACTT+TGG | - | chr1_2:18799264-18799283 | None:intergenic | 15.0% |
| !! | AAATATTCAATAATTTCCAA+GGG | + | chr1_2:18799483-18799502 | Msa0060860:intron | 15.0% |
| !! | GAAAATAAATAAAAAAACAG+AGG | + | chr1_2:18799674-18799693 | Msa0060860:intron | 15.0% |
| !! | ATTAACTAGTAATACTTAAT+AGG | + | chr1_2:18800583-18800602 | Msa0060860:intron | 15.0% |
| !! | TTAACTAGTAATACTTAATA+GGG | + | chr1_2:18800584-18800603 | Msa0060860:intron | 15.0% |
| !!! | ATTTTTTGAGCATTTTGAAA+AGG | - | chr1_2:18797230-18797249 | None:intergenic | 20.0% |
| !!! | ATATCTTATAGTCATTGTTT+TGG | + | chr1_2:18797692-18797711 | Msa0060860:intron | 20.0% |
| !!! | GCAGTTAAAGTTTTAAATTT+AGG | + | chr1_2:18798021-18798040 | Msa0060860:intron | 20.0% |
| !!! | AAAGTTTTAAATTTAGGTTG+TGG | + | chr1_2:18798027-18798046 | Msa0060860:intron | 20.0% |
| !! | GAATAAAATGAAATAGATTG+AGG | + | chr1_2:18798336-18798355 | Msa0060860:intron | 20.0% |
| !!! | TTTTATGACAGGATAAAAAA+TGG | + | chr1_2:18798385-18798404 | Msa0060860:intron | 20.0% |
| !!! | ATAGAAAGAATATTTTTTGG+CGG | + | chr1_2:18798438-18798457 | Msa0060860:intron | 20.0% |
| !! | ATGCTTACATTACATAAAAT+AGG | - | chr1_2:18798492-18798511 | None:intergenic | 20.0% |
| !!! | TTCATCATTTTGTTTCATTA+CGG | + | chr1_2:18798819-18798838 | Msa0060860:intron | 20.0% |
| !!! | TCTAATTATTTTGAAGTTGT+AGG | - | chr1_2:18798896-18798915 | None:intergenic | 20.0% |
| !!! | ATAATTAGATTTAGCTCAAT+CGG | + | chr1_2:18798907-18798926 | Msa0060860:intron | 20.0% |
| !!! | GAATGATACTATTTCTATAA+AGG | - | chr1_2:18799026-18799045 | None:intergenic | 20.0% |
| !!! | TTACATACAGTAATATTTTG+AGG | - | chr1_2:18799178-18799197 | None:intergenic | 20.0% |
| !! | ACAAAAATGTGTTTATACAA+AGG | - | chr1_2:18799234-18799253 | None:intergenic | 20.0% |
| !!! | TTTGTATAAACACATTTTTG+TGG | + | chr1_2:18799233-18799252 | Msa0060860:intron | 20.0% |
| !! | GAAATATTCAATAATTTCCA+AGG | + | chr1_2:18799482-18799501 | Msa0060860:intron | 20.0% |
| !! | TCAAAATAAAAAAAATGGAG+AGG | + | chr1_2:18799580-18799599 | Msa0060860:intron | 20.0% |
| !! | AGAAAAATAAAAACATACAG+TGG | + | chr1_2:18799698-18799717 | Msa0060860:intron | 20.0% |
| !! | GAAAAATAAAAACATACAGT+GGG | + | chr1_2:18799699-18799718 | Msa0060860:intron | 20.0% |
| !!! | ATGTTAAGTTTTTTGTTTTG+AGG | + | chr1_2:18801403-18801422 | Msa0060860:intron | 20.0% |
| !! | TGTAAGGTTATTAAAATTCT+TGG | + | chr1_2:18802065-18802084 | Msa0060860:three_prime_UTR | 20.0% |
| ! | ATCGCAATTTATATCTTAGA+TGG | - | chr1_2:18796913-18796932 | None:intergenic | 25.0% |
| !! | TGAGAAATTGTTCATTGTTT+TGG | - | chr1_2:18797085-18797104 | None:intergenic | 25.0% |
| !!! | ATTTTGAAAAGGTGGAAAAT+TGG | - | chr1_2:18797219-18797238 | None:intergenic | 25.0% |
| !! | TTACTGCTATCTTTAACTTT+CGG | + | chr1_2:18797288-18797307 | Msa0060860:CDS | 25.0% |
| ! | TTTCGAAGTTTACTGTTAAA+TGG | + | chr1_2:18797729-18797748 | Msa0060860:intron | 25.0% |
| ! | ATGACAGATGTTATACAATT+AGG | + | chr1_2:18797922-18797941 | Msa0060860:intron | 25.0% |
| !! | TGTTTACTTGATATGGTTTT+AGG | + | chr1_2:18797990-18798009 | Msa0060860:intron | 25.0% |
| ! | ATTTGATTATGGTTACATTG+TGG | + | chr1_2:18798168-18798187 | Msa0060860:intron | 25.0% |
| !!! | ATAGCAAAGGTTTTAAGTAA+AGG | - | chr1_2:18798239-18798258 | None:intergenic | 25.0% |
| !!! | TGATTGGATATTTTTATGAC+AGG | + | chr1_2:18798374-18798393 | Msa0060860:intron | 25.0% |
| ! | TTTATCTCATACTCTTAAGT+TGG | + | chr1_2:18798409-18798428 | Msa0060860:intron | 25.0% |
| ! | ATCCATATCAGTAATAAACA+GGG | - | chr1_2:18798961-18798980 | None:intergenic | 25.0% |
| ! | TATCCATATCAGTAATAAAC+AGG | - | chr1_2:18798962-18798981 | None:intergenic | 25.0% |
| ! | TAGAAATAGTATCATTCTCT+TGG | + | chr1_2:18799029-18799048 | Msa0060860:intron | 25.0% |
| ! | AGAAATAGTATCATTCTCTT+GGG | + | chr1_2:18799030-18799049 | Msa0060860:intron | 25.0% |
| !!! | TACAGTAATATTTTGAGGAT+AGG | - | chr1_2:18799173-18799192 | None:intergenic | 25.0% |
| !!! | GCTACTATTTGATCATTTTT+TGG | + | chr1_2:18799383-18799402 | Msa0060860:intron | 25.0% |
| !!! | TCATTTTTTGGACAAATACA+TGG | + | chr1_2:18799395-18799414 | Msa0060860:intron | 25.0% |
| !!! | TATGACTTTTATTTTTCCCT+TGG | - | chr1_2:18799502-18799521 | None:intergenic | 25.0% |
| ! | AGAGAAATAAGAAAAACAGA+GGG | + | chr1_2:18799548-18799567 | Msa0060860:intron | 25.0% |
| !! | ATAAAAAGCATAACAGAGAA+AGG | + | chr1_2:18799652-18799671 | Msa0060860:intron | 25.0% |
| ! | TTTGCAATATGATTTAGAGA+AGG | + | chr1_2:18800638-18800657 | Msa0060860:intron | 25.0% |
| ! | TTGCAATATGATTTAGAGAA+GGG | + | chr1_2:18800639-18800658 | Msa0060860:intron | 25.0% |
| !! | TTTTCTGACATGTCAATAAT+AGG | - | chr1_2:18800672-18800691 | None:intergenic | 25.0% |
| !! | ACTGATAATGTAAAAAACAC+AGG | + | chr1_2:18800979-18800998 | Msa0060860:intron | 25.0% |
| ! | TTTACATGACATATGTGTAT+CGG | - | chr1_2:18801008-18801027 | None:intergenic | 25.0% |
| ! | TGAGGTTAAGAAATAAGATT+GGG | + | chr1_2:18801178-18801197 | Msa0060860:intron | 25.0% |
| ! | TTATATTGATGCATGATACT+TGG | - | chr1_2:18801441-18801460 | None:intergenic | 25.0% |
| !!! | TTATTCTGATTTGCTAAATC+TGG | + | chr1_2:18801510-18801529 | Msa0060860:intron | 25.0% |
| !!! | TATTCTGATTTGCTAAATCT+GGG | + | chr1_2:18801511-18801530 | Msa0060860:intron | 25.0% |
| ! | ATGAAACTGTTGTTACATAT+TGG | + | chr1_2:18802009-18802028 | Msa0060860:three_prime_UTR | 25.0% |
| !! | TGTCTATCAAAGTTTTTGTA+AGG | + | chr1_2:18802049-18802068 | Msa0060860:three_prime_UTR | 25.0% |
| !! | TTCAATTTGAAATCTTGTGA+AGG | + | chr1_2:18802105-18802124 | Msa0060860:three_prime_UTR | 25.0% |
| !! | TCAATTTGAAATCTTGTGAA+GGG | + | chr1_2:18802106-18802125 | Msa0060860:three_prime_UTR | 25.0% |
| ATATAAATTGCGATTCCGTT+CGG | + | chr1_2:18796919-18796938 | Msa0060860:five_prime_UTR | 30.0% | |
| !!! | AGGATCTTGTTTTGTCTATT+GGG | - | chr1_2:18796954-18796973 | None:intergenic | 30.0% |
| AAAACAAGATCCTCTGAATT+TGG | + | chr1_2:18796961-18796980 | Msa0060860:five_prime_UTR | 30.0% | |
| ATTAGAAGATCCAAATTCAG+AGG | - | chr1_2:18796974-18796993 | None:intergenic | 30.0% | |
| ! | CTAAATCGAAATCGGATTTT+GGG | - | chr1_2:18797143-18797162 | None:intergenic | 30.0% |
| ! | TCTAAATCGAAATCGGATTT+TGG | - | chr1_2:18797144-18797163 | None:intergenic | 30.0% |
| ! | TGGAAAATTGGTGAGTTTTT+GGG | - | chr1_2:18797207-18797226 | None:intergenic | 30.0% |
| !! | TTTTGAGCATTTTGAAAAGG+TGG | - | chr1_2:18797227-18797246 | None:intergenic | 30.0% |
| AAGGATGAAGCTTGAAAAAA+TGG | - | chr1_2:18797257-18797276 | None:intergenic | 30.0% | |
| GTAAGAGAGAAAAACGAAAA+GGG | - | chr1_2:18797319-18797338 | None:intergenic | 30.0% | |
| TGTAAGAGAGAAAAACGAAA+AGG | - | chr1_2:18797320-18797339 | None:intergenic | 30.0% | |
| ! | ATTGTTGATAAGGATGAGAA+GGG | + | chr1_2:18797558-18797577 | Msa0060860:CDS | 30.0% |
| TTTCTATACGTAAATGTCTG+AGG | + | chr1_2:18797755-18797774 | Msa0060860:intron | 30.0% | |
| ATCGATAAAATTACTAGCGA+TGG | + | chr1_2:18797861-18797880 | Msa0060860:intron | 30.0% | |
| ! | ATAAAGAACCGTGATTTTGT+TGG | + | chr1_2:18798116-18798135 | Msa0060860:intron | 30.0% |
| CAAATGTTCCAACAAAATCA+CGG | - | chr1_2:18798127-18798146 | None:intergenic | 30.0% | |
| TTGTTGGAACATTTGTGATA+TGG | + | chr1_2:18798132-18798151 | Msa0060860:intron | 30.0% | |
| TGTTGGAACATTTGTGATAT+GGG | + | chr1_2:18798133-18798152 | Msa0060860:intron | 30.0% | |
| TCTCTTTAACAACATAGCAA+AGG | - | chr1_2:18798252-18798271 | None:intergenic | 30.0% | |
| GCTACTATCATTCTATTGAT+TGG | + | chr1_2:18798358-18798377 | Msa0060860:intron | 30.0% | |
| !!! | AAGAATATTTTTTGGCGGAA+TGG | + | chr1_2:18798443-18798462 | Msa0060860:intron | 30.0% |
| ACGAAAAGATTGAAGTAGAA+TGG | - | chr1_2:18798537-18798556 | None:intergenic | 30.0% | |
| ! | TCAATTCATGTCAATTTGCT+TGG | + | chr1_2:18798556-18798575 | Msa0060860:intron | 30.0% |
| GTACAATCAGTCAAATATCT+AGG | - | chr1_2:18798582-18798601 | None:intergenic | 30.0% | |
| CTACATTCCTAAAACTGTTA+TGG | - | chr1_2:18798627-18798646 | None:intergenic | 30.0% | |
| GTGTATTATGCACTTTATGT+CGG | + | chr1_2:18798661-18798680 | Msa0060860:intron | 30.0% | |
| TGATAAAAGAACATCAAGCA+TGG | + | chr1_2:18798717-18798736 | Msa0060860:intron | 30.0% | |
| AACAAAGACAAACAATGCAA+CGG | - | chr1_2:18798936-18798955 | None:intergenic | 30.0% | |
| TTCCCTGTTTATTACTGATA+TGG | + | chr1_2:18798956-18798975 | Msa0060860:intron | 30.0% | |
| TGATATGGATAACATGAAAG+TGG | + | chr1_2:18798971-18798990 | Msa0060860:intron | 30.0% | |
| TCTATAAAGGCAGTTTATGT+GGG | - | chr1_2:18799013-18799032 | None:intergenic | 30.0% | |
| TTCTATAAAGGCAGTTTATG+TGG | - | chr1_2:18799014-18799033 | None:intergenic | 30.0% | |
| ATCTTCTATTTAGTGTCTGT+CGG | + | chr1_2:18799128-18799147 | Msa0060860:CDS | 30.0% | |
| TAAAATATGTGGCCATACTT+AGG | + | chr1_2:18799295-18799314 | Msa0060860:intron | 30.0% | |
| GAGAGAAATAAGAAAAACAG+AGG | + | chr1_2:18799547-18799566 | Msa0060860:intron | 30.0% | |
| GAAAATTAAGGGAAAGTGAT+AGG | + | chr1_2:18799906-18799925 | Msa0060860:intron | 30.0% | |
| !! | TCAGATTTTAAGGGCTAAAA+TGG | + | chr1_2:18800004-18800023 | Msa0060860:intron | 30.0% |
| GTGAATTGTCTCCAATAATA+AGG | - | chr1_2:18800407-18800426 | None:intergenic | 30.0% | |
| !!! | TTGGAGACAATTCACTTTTT+AGG | + | chr1_2:18800412-18800431 | Msa0060860:intron | 30.0% |
| CATTGAATAACTGATGTATC+TGG | + | chr1_2:18800437-18800456 | Msa0060860:intron | 30.0% | |
| AAATTGCAGAAAAGAAAGTG+CGG | + | chr1_2:18800554-18800573 | Msa0060860:intron | 30.0% | |
| ACTGCTAATGTAAAAAACAC+AGG | + | chr1_2:18800747-18800766 | Msa0060860:intron | 30.0% | |
| ! | TGCAGTTTGAGATACATATA+CGG | - | chr1_2:18800904-18800923 | None:intergenic | 30.0% |
| !!! | CACATTTTGAGATACATAGA+CGG | - | chr1_2:18801136-18801155 | None:intergenic | 30.0% |
| GTGAGGTTAAGAAATAAGAT+TGG | + | chr1_2:18801177-18801196 | Msa0060860:intron | 30.0% | |
| GATTCAATAGTAGTATGGAA+CGG | + | chr1_2:18801379-18801398 | Msa0060860:intron | 30.0% | |
| ACTATTCATGCAACATTAAG+TGG | - | chr1_2:18801926-18801945 | None:intergenic | 30.0% | |
| ! | CAATTTGAAATCTTGTGAAG+GGG | + | chr1_2:18802107-18802126 | Msa0060860:three_prime_UTR | 30.0% |
| !!! | GAGGATCTTGTTTTGTCTAT+TGG | - | chr1_2:18796955-18796974 | None:intergenic | 35.0% |
| TGAAGTGAGTAGTGAAAAAG+TGG | - | chr1_2:18797001-18797020 | None:intergenic | 35.0% | |
| ! | TTTTTGCAAGAGAAGCTACA+TGG | - | chr1_2:18797026-18797045 | None:intergenic | 35.0% |
| GGCAGATTCTAAATCGAAAT+CGG | - | chr1_2:18797151-18797170 | None:intergenic | 35.0% | |
| !!! | TTTTCTGGTTCGTTTGATTG+TGG | - | chr1_2:18797184-18797203 | None:intergenic | 35.0% |
| ! | GTGGAAAATTGGTGAGTTTT+TGG | - | chr1_2:18797208-18797227 | None:intergenic | 35.0% |
| GATGAAGCTTGAAAAAATGG+TGG | - | chr1_2:18797254-18797273 | None:intergenic | 35.0% | |
| AGCAGTAAAATAGCTACGAA+AGG | - | chr1_2:18797276-18797295 | None:intergenic | 35.0% | |
| TTTCGCGTAATTGTTCAACT+GGG | - | chr1_2:18797349-18797368 | None:intergenic | 35.0% | |
| ! | TTTTCGCGTAATTGTTCAAC+TGG | - | chr1_2:18797350-18797369 | None:intergenic | 35.0% |
| AATTACGCGAAAACTGATCT+GGG | + | chr1_2:18797357-18797376 | Msa0060860:CDS | 35.0% | |
| AAATTCCTCAGCTTCGAAAA+CGG | - | chr1_2:18797396-18797415 | None:intergenic | 35.0% | |
| TTGTGAGAAGATTGAGAAAG+AGG | + | chr1_2:18797455-18797474 | Msa0060860:CDS | 35.0% | |
| TACGTTTGTGAAGCATATTG+AGG | + | chr1_2:18797524-18797543 | Msa0060860:CDS | 35.0% | |
| TTTGTGAAGCATATTGAGGA+AGG | + | chr1_2:18797528-18797547 | Msa0060860:CDS | 35.0% | |
| ! | GATTGTTGATAAGGATGAGA+AGG | + | chr1_2:18797557-18797576 | Msa0060860:CDS | 35.0% |
| !! | AAGGGTTTGCTTTTGTTTAG+TGG | + | chr1_2:18797576-18797595 | Msa0060860:CDS | 35.0% |
| !!! | CTGTTGCTGATTTTAAAGGA+TGG | + | chr1_2:18797652-18797671 | Msa0060860:CDS | 35.0% |
| !! | GCTGATTTTAAAGGATGGTT+TGG | + | chr1_2:18797657-18797676 | Msa0060860:CDS | 35.0% |
| ATTACTAGCGATGGACATTA+AGG | + | chr1_2:18797870-18797889 | Msa0060860:intron | 35.0% | |
| GTTGTGATTGCAATCATGTT+AGG | + | chr1_2:18798083-18798102 | Msa0060860:intron | 35.0% | |
| ! | CAGACTGCAATTTAAGACTA+TGG | + | chr1_2:18798291-18798310 | Msa0060860:intron | 35.0% |
| !! | ATCTCATACTCTTAAGTTGG+AGG | + | chr1_2:18798412-18798431 | Msa0060860:intron | 35.0% |
| !! | TCTCATACTCTTAAGTTGGA+GGG | + | chr1_2:18798413-18798432 | Msa0060860:intron | 35.0% |
| ! | ATGCTTGCCATAACAGTTTT+AGG | + | chr1_2:18798617-18798636 | Msa0060860:intron | 35.0% |
| CATCTAAATACAAGCTCGAT+TGG | - | chr1_2:18798755-18798774 | None:intergenic | 35.0% | |
| ! | GTAAGGAAGAAAGTGTGAAA+TGG | + | chr1_2:18799065-18799084 | Msa0060860:CDS | 35.0% |
| CTTCAGAACTCACAAAAGTA+AGG | - | chr1_2:18799202-18799221 | None:intergenic | 35.0% | |
| TGAGATTGACTACCTAAGTA+TGG | - | chr1_2:18799310-18799329 | None:intergenic | 35.0% | |
| !! | TATACGCTATCCCACTTTTA+TGG | - | chr1_2:18799355-18799374 | None:intergenic | 35.0% |
| TAGCAAATACCATAACAGAG+AGG | + | chr1_2:18799520-18799539 | Msa0060860:intron | 35.0% | |
| AGCAAATACCATAACAGAGA+GGG | + | chr1_2:18799521-18799540 | Msa0060860:intron | 35.0% | |
| AAATGGAGAGGAAGAAAAAC+TGG | + | chr1_2:18799592-18799611 | Msa0060860:intron | 35.0% | |
| AATGGAGAGGAAGAAAAACT+GGG | + | chr1_2:18799593-18799612 | Msa0060860:intron | 35.0% | |
| AAAATGTGAGGAAGGAAATC+TGG | + | chr1_2:18799723-18799742 | Msa0060860:intron | 35.0% | |
| TGGAAACAGAGGAACTAAAA+CGG | + | chr1_2:18799752-18799771 | Msa0060860:intron | 35.0% | |
| TGCACAGGGAAGAAAATTAA+GGG | + | chr1_2:18799895-18799914 | Msa0060860:intron | 35.0% | |
| ! | TCAAGGGACTCAGATTTTAA+GGG | + | chr1_2:18799995-18800014 | Msa0060860:intron | 35.0% |
| TGCACAGAATGTTGTATTCT+CGG | + | chr1_2:18800071-18800090 | Msa0060860:intron | 35.0% | |
| ! | ATTGTGATGGAACAACAGAA+TGG | - | chr1_2:18800203-18800222 | None:intergenic | 35.0% |
| CTGAGAATCTGATATTGTGA+TGG | - | chr1_2:18800216-18800235 | None:intergenic | 35.0% | |
| GAGATATGCTCAGAACTAAT+TGG | + | chr1_2:18800254-18800273 | Msa0060860:intron | 35.0% | |
| ! | TGTCTTTGATATTTCTGCCT+CGG | + | chr1_2:18800361-18800380 | Msa0060860:intron | 35.0% |
| CTACCTCTGTTCCTTATTAT+TGG | + | chr1_2:18800393-18800412 | Msa0060860:intron | 35.0% | |
| TCTCCAATAATAAGGAACAG+AGG | - | chr1_2:18800399-18800418 | None:intergenic | 35.0% | |
| !!! | CAGGAGACAATTCACTTTTT+AGG | - | chr1_2:18800502-18800521 | None:intergenic | 35.0% |
| ! | AGTTTGAGATACATATACGG+AGG | - | chr1_2:18800901-18800920 | None:intergenic | 35.0% |
| !!! | ATTTTGAGATACATAGACGG+AGG | - | chr1_2:18801133-18801152 | None:intergenic | 35.0% |
| TACTACTATTGAATCAGCAG+TGG | - | chr1_2:18801374-18801393 | None:intergenic | 35.0% | |
| !! | CTGCTGATTCAATAGTAGTA+TGG | + | chr1_2:18801374-18801393 | Msa0060860:intron | 35.0% |
| ! | ATTTGCTAAATCTGGGAATC+AGG | + | chr1_2:18801518-18801537 | Msa0060860:intron | 35.0% |
| ! | GCAAAAGAAGCTGCTTTAAA+AGG | + | chr1_2:18801648-18801667 | Msa0060860:CDS | 35.0% |
| ! | TCAATTTCTGGACATCCATT+AGG | - | chr1_2:18801780-18801799 | None:intergenic | 35.0% |
| CTGAACAAAGGTTCAATTTC+TGG | - | chr1_2:18801792-18801811 | None:intergenic | 35.0% | |
| ! | AGTGTACACTAAAAGCATAG+AGG | + | chr1_2:18801883-18801902 | Msa0060860:three_prime_UTR | 35.0% |
| !! | AATTCTTGGTGTTCTCAACA+TGG | + | chr1_2:18802079-18802098 | Msa0060860:three_prime_UTR | 35.0% |
| AAGCGATGCAATGGAATCAT+TGG | - | chr1_2:18797058-18797077 | None:intergenic | 40.0% | |
| !! | TTTGGTTTGAAGCGATGCAA+TGG | - | chr1_2:18797067-18797086 | None:intergenic | 40.0% |
| !! | AAATCGGATTTTGGGTATGC+GGG | - | chr1_2:18797135-18797154 | None:intergenic | 40.0% |
| !! | GAAATCGGATTTTGGGTATG+CGG | - | chr1_2:18797136-18797155 | None:intergenic | 40.0% |
| TTTGATTGTGGTTGTGGGAA+TGG | - | chr1_2:18797172-18797191 | None:intergenic | 40.0% | |
| GTTCGTTTGATTGTGGTTGT+GGG | - | chr1_2:18797177-18797196 | None:intergenic | 40.0% | |
| !!! | TGGTGAGTTTTTGGGTTTTC+TGG | - | chr1_2:18797199-18797218 | None:intergenic | 40.0% |
| CAATTACGCGAAAACTGATC+TGG | + | chr1_2:18797356-18797375 | Msa0060860:CDS | 40.0% | |
| AATTCCTCAGCTTCGAAAAC+GGG | - | chr1_2:18797395-18797414 | None:intergenic | 40.0% | |
| ! | GTTTTCGAAGCTGAGGAATT+TGG | + | chr1_2:18797395-18797414 | Msa0060860:CDS | 40.0% |
| GAAGCTGAGGAATTTGGTTA+TGG | + | chr1_2:18797401-18797420 | Msa0060860:CDS | 40.0% | |
| AGGAATTTGGTTATGGTTGC+TGG | + | chr1_2:18797408-18797427 | Msa0060860:CDS | 40.0% | |
| CATTCGGTTTATACGAGTAG+TGG | + | chr1_2:18797432-18797451 | Msa0060860:CDS | 40.0% | |
| AGATTGAGAAAGAGGATTCG+TGG | + | chr1_2:18797463-18797482 | Msa0060860:CDS | 40.0% | |
| GAAAGAGGATTCGTGGTATT+TGG | + | chr1_2:18797470-18797489 | Msa0060860:CDS | 40.0% | |
| GAGAGTTATCAGAAGAATCC+TGG | + | chr1_2:18797492-18797511 | Msa0060860:CDS | 40.0% | |
| TTATCAGAAGAATCCTGGTC+AGG | + | chr1_2:18797497-18797516 | Msa0060860:CDS | 40.0% | |
| AAGCATATTGAGGAAGGAGT+TGG | + | chr1_2:18797534-18797553 | Msa0060860:CDS | 40.0% | |
| AGCATATTGAGGAAGGAGTT+GGG | + | chr1_2:18797535-18797554 | Msa0060860:CDS | 40.0% | |
| AGGAGTTGGGATTGTTGATA+AGG | + | chr1_2:18797548-18797567 | Msa0060860:CDS | 40.0% | |
| !! | GGTTTGCTTTTGTTTAGTGG+TGG | + | chr1_2:18797579-18797598 | Msa0060860:CDS | 40.0% |
| !!! | TGGGCTGTTGCTGATTTTAA+AGG | + | chr1_2:18797648-18797667 | Msa0060860:CDS | 40.0% |
| CCATGTTCTTTCACATAGAC+AGG | - | chr1_2:18798788-18798807 | None:intergenic | 40.0% | |
| CCTGTCTATGTGAAAGAACA+TGG | + | chr1_2:18798785-18798804 | Msa0060860:intron | 40.0% | |
| GTTTATGTGGGAAGCAAATG+CGG | - | chr1_2:18799001-18799020 | None:intergenic | 40.0% | |
| !! | TGTGAAATGGAGAGCACTTA+CGG | + | chr1_2:18799078-18799097 | Msa0060860:CDS | 40.0% |
| ACTTACGGAAGAACATGCAA+GGG | + | chr1_2:18799093-18799112 | Msa0060860:CDS | 40.0% | |
| CATACAGTGGGAAAAATGTG+AGG | + | chr1_2:18799711-18799730 | Msa0060860:intron | 40.0% | |
| GGAAACAGAGGAACTAAAAC+GGG | + | chr1_2:18799753-18799772 | Msa0060860:intron | 40.0% | |
| TAAAACGGGAAACAGAGGAA+GGG | + | chr1_2:18799767-18799786 | Msa0060860:intron | 40.0% | |
| GCTGTCTTGCAGAAATCAAA+AGG | + | chr1_2:18799849-18799868 | Msa0060860:intron | 40.0% | |
| AAGAAGAAAGGTTTGTGCAC+AGG | + | chr1_2:18799880-18799899 | Msa0060860:intron | 40.0% | |
| AGAAGAAAGGTTTGTGCACA+GGG | + | chr1_2:18799881-18799900 | Msa0060860:intron | 40.0% | |
| GTGCACAGGGAAGAAAATTA+AGG | + | chr1_2:18799894-18799913 | Msa0060860:intron | 40.0% | |
| CTTAAAATCTGAGTCCCTTG+AGG | - | chr1_2:18799996-18800015 | None:intergenic | 40.0% | |
| ! | CTCAAGGGACTCAGATTTTA+AGG | + | chr1_2:18799994-18800013 | Msa0060860:intron | 40.0% |
| TTCCCAGAAAAACAGTAGCA+TGG | + | chr1_2:18800335-18800354 | Msa0060860:intron | 40.0% | |
| !! | CTCCATGCTACTGTTTTTCT+GGG | - | chr1_2:18800340-18800359 | None:intergenic | 40.0% |
| !! | ACTCCATGCTACTGTTTTTC+TGG | - | chr1_2:18800341-18800360 | None:intergenic | 40.0% |
| AGAGGTAGTATTTAGTACCG+AGG | - | chr1_2:18800381-18800400 | None:intergenic | 40.0% | |
| GTGAATTGTCTCCTGTAACA+AGG | + | chr1_2:18800507-18800526 | Msa0060860:intron | 40.0% | |
| TTGTCTCCTGTAACAAGGAA+TGG | + | chr1_2:18800512-18800531 | Msa0060860:intron | 40.0% | |
| CATTAGCAGTGTGAACATGT+CGG | - | chr1_2:18800737-18800756 | None:intergenic | 40.0% | |
| GATATACGTCTAATCTCCTC+AGG | + | chr1_2:18801276-18801295 | Msa0060860:intron | 40.0% | |
| GAATGTGCATGTGATCATAG+TGG | - | chr1_2:18801352-18801371 | None:intergenic | 40.0% | |
| AATCTACATCGATCTGCGAT+TGG | + | chr1_2:18801576-18801595 | Msa0060860:CDS | 40.0% | |
| ! | TCTTTTGCATTTGACGTAGC+AGG | - | chr1_2:18801636-18801655 | None:intergenic | 40.0% |
| !! | TGCTTTAAAAGGCGAGGAAT+TGG | + | chr1_2:18801659-18801678 | Msa0060860:CDS | 40.0% |
| CAATTCTCAAGAGATCCGTT+CGG | + | chr1_2:18801690-18801709 | Msa0060860:CDS | 40.0% | |
| ACGGAATTGAGCGATGAAAA+GGG | - | chr1_2:18801755-18801774 | None:intergenic | 40.0% | |
| TACGGAATTGAGCGATGAAA+AGG | - | chr1_2:18801756-18801775 | None:intergenic | 40.0% | |
| TCTGGACATCCATTAGGATA+CGG | - | chr1_2:18801774-18801793 | None:intergenic | 40.0% | |
| GAACCTTTGTTCAGATACTG+TGG | + | chr1_2:18801798-18801817 | Msa0060860:CDS | 40.0% | |
| AATTGCGATTCCGTTCGGTT+TGG | + | chr1_2:18796924-18796943 | Msa0060860:five_prime_UTR | 45.0% | |
| ATTGGGTCATCCAAACCGAA+CGG | - | chr1_2:18796937-18796956 | None:intergenic | 45.0% | |
| GCAATGGAATCATTGGATCG+CGG | - | chr1_2:18797051-18797070 | None:intergenic | 45.0% | |
| GTATGCGGGGAAAGATTTGT+AGG | - | chr1_2:18797121-18797140 | None:intergenic | 45.0% | |
| !! | AATCGGATTTTGGGTATGCG+GGG | - | chr1_2:18797134-18797153 | None:intergenic | 45.0% |
| GGTTCGTTTGATTGTGGTTG+TGG | - | chr1_2:18797178-18797197 | None:intergenic | 45.0% | |
| ! | ATTACCCGTTTTCGAAGCTG+AGG | + | chr1_2:18797388-18797407 | Msa0060860:CDS | 45.0% |
| GGTTATGGTTGCTGGTCATT+CGG | + | chr1_2:18797416-18797435 | Msa0060860:CDS | 45.0% | |
| TCATCCACTCGGCTATATCT+AGG | - | chr1_2:18798059-18798078 | None:intergenic | 45.0% | |
| ATATAGCCGAGTGGATGATG+TGG | + | chr1_2:18798061-18798080 | Msa0060860:intron | 45.0% | |
| TCACAACCACATCATCCACT+CGG | - | chr1_2:18798070-18798089 | None:intergenic | 45.0% | |
| AACATCAAGCATGGTAGACC+AGG | + | chr1_2:18798726-18798745 | Msa0060860:intron | 45.0% | |
| CCTACAGAACTGATGAGACA+GGG | - | chr1_2:18798853-18798872 | None:intergenic | 45.0% | |
| ! | TTCTCTTGGGTTGTCTCTGT+AGG | + | chr1_2:18799043-18799062 | Msa0060860:intron | 45.0% |
| ! | TTGGGTTGTCTCTGTAGGTA+AGG | + | chr1_2:18799048-18799067 | Msa0060860:intron | 45.0% |
| CACTTACGGAAGAACATGCA+AGG | + | chr1_2:18799092-18799111 | Msa0060860:CDS | 45.0% | |
| AAAGTGGGATAGCGTATAGC+AGG | + | chr1_2:18799357-18799376 | Msa0060860:intron | 45.0% | |
| AAGTGGGATAGCGTATAGCA+GGG | + | chr1_2:18799358-18799377 | Msa0060860:intron | 45.0% | |
| GAGAGGAAGAAAAACTGGGT+CGG | + | chr1_2:18799597-18799616 | Msa0060860:intron | 45.0% | |
| CAGTGGGAAAAATGTGAGGA+AGG | + | chr1_2:18799715-18799734 | Msa0060860:intron | 45.0% | |
| GGAAGGAAATCTGGACAAGA+TGG | + | chr1_2:18799732-18799751 | Msa0060860:intron | 45.0% | |
| TCTGGACAAGATGGAAACAG+AGG | + | chr1_2:18799741-18799760 | Msa0060860:intron | 45.0% | |
| GGAACTAAAACGGGAAACAG+AGG | + | chr1_2:18799762-18799781 | Msa0060860:intron | 45.0% | |
| CTAAAACGGGAAACAGAGGA+AGG | + | chr1_2:18799766-18799785 | Msa0060860:intron | 45.0% | |
| AGAGGAAGGGAAACAGAATC+TGG | + | chr1_2:18799780-18799799 | Msa0060860:intron | 45.0% | |
| GCAGAAATCAAAAGGAGAGC+AGG | + | chr1_2:18799857-18799876 | Msa0060860:intron | 45.0% | |
| AAGGAGAGCAGGAAGAAGAA+AGG | + | chr1_2:18799868-18799887 | Msa0060860:intron | 45.0% | |
| GTGATAGGTCTCTGCATTCA+CGG | + | chr1_2:18799921-18799940 | Msa0060860:intron | 45.0% | |
| GAGAGGAATAGAGGAGAAGT+AGG | + | chr1_2:18799943-18799962 | Msa0060860:intron | 45.0% | |
| AATACCCAGAATACGCCTCA+AGG | + | chr1_2:18799978-18799997 | Msa0060860:intron | 45.0% | |
| ATACCCAGAATACGCCTCAA+GGG | + | chr1_2:18799979-18799998 | Msa0060860:intron | 45.0% | |
| GCGATGTGATTGACTACCTA+TGG | + | chr1_2:18800177-18800196 | Msa0060860:intron | 45.0% | |
| TGGAACAACAGAATGGCCAT+AGG | - | chr1_2:18800196-18800215 | None:intergenic | 45.0% | |
| TCTCCTGTAACAAGGAATGG+AGG | + | chr1_2:18800515-18800534 | Msa0060860:intron | 45.0% | |
| CTACCTCCATTCCTTGTTAC+AGG | - | chr1_2:18800521-18800540 | None:intergenic | 45.0% | |
| ! | TTGCAGAAAAGAAAGTGCGG+AGG | + | chr1_2:18800557-18800576 | Msa0060860:intron | 45.0% |
| CACACACATTAGACACTGTC+TGG | - | chr1_2:18801160-18801179 | None:intergenic | 45.0% | |
| GACAGTGTCTAATGTGTGTG+AGG | + | chr1_2:18801160-18801179 | Msa0060860:intron | 45.0% | |
| TGTCAGTGTGCGATAATCGT+AGG | - | chr1_2:18801243-18801262 | None:intergenic | 45.0% | |
| !! | AGAAGCTGCTTTAAAAGGCG+AGG | + | chr1_2:18801653-18801672 | Msa0060860:CDS | 45.0% |
| CGCTCAATTCCGTATCCTAA+TGG | + | chr1_2:18801762-18801781 | Msa0060860:CDS | 45.0% | |
| GGTCCACAGTATCTGAACAA+AGG | - | chr1_2:18801804-18801823 | None:intergenic | 45.0% | |
| !! | AAATAATATATTAAAATATG+TGG | + | chr1_2:18799284-18799303 | Msa0060860:intron | 5.0% |
| !! | AAAAATCAAAATAAAAAAAA+TGG | + | chr1_2:18799575-18799594 | Msa0060860:intron | 5.0% |
| ! | TGTTTAGTGGTGGTGAGACG+AGG | + | chr1_2:18797589-18797608 | Msa0060860:CDS | 50.0% |
| GAGTGAGGCGCAGAGTTATT+GGG | + | chr1_2:18797629-18797648 | Msa0060860:CDS | 50.0% | |
| TCGTCCTAGATATAGCCGAG+TGG | + | chr1_2:18798052-18798071 | Msa0060860:intron | 50.0% | |
| ! | TACAAGCTCGATTGGCTACC+TGG | - | chr1_2:18798747-18798766 | None:intergenic | 50.0% |
| ACAGAACTGATGAGACAGGG+CGG | - | chr1_2:18798850-18798869 | None:intergenic | 50.0% | |
| CCCTGTCTCATCAGTTCTGT+AGG | + | chr1_2:18798850-18798869 | Msa0060860:intron | 50.0% | |
| GCCTACAGAACTGATGAGAC+AGG | - | chr1_2:18798854-18798873 | None:intergenic | 50.0% | |
| GATAGGTGCCAGTAAGCTCT+CGG | - | chr1_2:18799156-18799175 | None:intergenic | 50.0% | |
| !! | CGCTATCCCACTTTTATGGC+CGG | - | chr1_2:18799351-18799370 | None:intergenic | 50.0% |
| CTCTCACACCCTCTCTGTTA+TGG | - | chr1_2:18799532-18799551 | None:intergenic | 50.0% | |
| AAACAGAATCTGGTGTGCGC+TGG | + | chr1_2:18799790-18799809 | Msa0060860:intron | 50.0% | |
| GCATTCACGGAGAGGAATAG+AGG | + | chr1_2:18799934-18799953 | Msa0060860:intron | 50.0% | |
| AGTCCCTTGAGGCGTATTCT+GGG | - | chr1_2:18799985-18800004 | None:intergenic | 50.0% | |
| CAATCACATCGCGATCACCA+TGG | - | chr1_2:18800169-18800188 | None:intergenic | 50.0% | |
| GGGACACTTGTCTGAGTTGT+CGG | + | chr1_2:18801198-18801217 | Msa0060860:intron | 50.0% | |
| GGACACTTGTCTGAGTTGTC+GGG | + | chr1_2:18801199-18801218 | Msa0060860:intron | 50.0% | |
| TATCGCACACTGACACGTGT+TGG | + | chr1_2:18801248-18801267 | Msa0060860:intron | 50.0% | |
| ACACTGACACGTGTTGGACA+GGG | + | chr1_2:18801254-18801273 | Msa0060860:intron | 50.0% | |
| !! | CGATTGGCTTTCCAGAGTCA+AGG | + | chr1_2:18801592-18801611 | Msa0060860:CDS | 50.0% |
| GCGTAGAAGAACCTTGACTC+TGG | - | chr1_2:18801606-18801625 | None:intergenic | 50.0% | |
| GAGTCAAGGTTCTTCTACGC+TGG | + | chr1_2:18801606-18801625 | Msa0060860:CDS | 50.0% | |
| AGTGAACCTCGACATCCGAA+CGG | - | chr1_2:18801708-18801727 | None:intergenic | 50.0% | |
| AACCACCACTACTATGCCCA+CGG | - | chr1_2:18801849-18801868 | None:intergenic | 50.0% | |
| ACAAACGTAGCAGCCTGACC+AGG | - | chr1_2:18797513-18797532 | None:intergenic | 55.0% | |
| TGGTGAGACGAGGAAAGACG+CGG | + | chr1_2:18797599-18797618 | Msa0060860:CDS | 55.0% | |
| TAACTCTGCGCCTCACTCCT+CGG | - | chr1_2:18797627-18797646 | None:intergenic | 55.0% | |
| GGAGTGAGGCGCAGAGTTAT+TGG | + | chr1_2:18797628-18797647 | Msa0060860:CDS | 55.0% | |
| !! | TGTCGGTTCCGAGAGCTTAC+TGG | + | chr1_2:18799145-18799164 | Msa0060860:CDS | 55.0% |
| AAATAGCAGCGCAGAGCAGC+CGG | + | chr1_2:18799329-18799348 | Msa0060860:intron | 55.0% | |
| AGAGCAGCCGGCCATAAAAG+TGG | + | chr1_2:18799341-18799360 | Msa0060860:intron | 55.0% | |
| GAGCAGCCGGCCATAAAAGT+GGG | + | chr1_2:18799342-18799361 | Msa0060860:intron | 55.0% | |
| ! | TGGACTGTCTGATGGTAGCG+TGG | + | chr1_2:18799810-18799829 | Msa0060860:intron | 55.0% |
| ! | GGACTGTCTGATGGTAGCGT+GGG | + | chr1_2:18799811-18799830 | Msa0060860:intron | 55.0% |
| ! | GACTGTCTGATGGTAGCGTG+GGG | + | chr1_2:18799812-18799831 | Msa0060860:intron | 55.0% |
| GCGTGGGGTGAACATGTTTG+TGG | + | chr1_2:18799827-18799846 | Msa0060860:intron | 55.0% | |
| AGGTCTCTGCATTCACGGAG+AGG | + | chr1_2:18799926-18799945 | Msa0060860:intron | 55.0% | |
| GAGTCCCTTGAGGCGTATTC+TGG | - | chr1_2:18799986-18800005 | None:intergenic | 55.0% | |
| CTCGGAGAATGCATCTGACG+CGG | + | chr1_2:18800089-18800108 | Msa0060860:intron | 55.0% | |
| ACATCGCGATCACCATGGTG+CGG | - | chr1_2:18800164-18800183 | None:intergenic | 55.0% | |
| CACACTGACACGTGTTGGAC+AGG | + | chr1_2:18801253-18801272 | Msa0060860:intron | 55.0% | |
| ATGAAGCACGAACACGCCTG+AGG | - | chr1_2:18801295-18801314 | None:intergenic | 55.0% | |
| AGAGATCCGTTCGGATGTCG+AGG | + | chr1_2:18801699-18801718 | Msa0060860:CDS | 55.0% | |
| TGTGGACCAGCTCCATATCC+TGG | + | chr1_2:18801816-18801835 | Msa0060860:CDS | 55.0% | |
| AGTGCACCAGGATATGGAGC+TGG | - | chr1_2:18801825-18801844 | None:intergenic | 55.0% | |
| ATATCCTGGTGCACTCCCGT+GGG | + | chr1_2:18801830-18801849 | Msa0060860:CDS | 55.0% | |
| ACCACCACTACTATGCCCAC+GGG | - | chr1_2:18801848-18801867 | None:intergenic | 55.0% | |
| GGTGAGACGAGGAAAGACGC+GGG | + | chr1_2:18797600-18797619 | Msa0060860:CDS | 60.0% | |
| GTGAGACGAGGAAAGACGCG+GGG | + | chr1_2:18797601-18797620 | Msa0060860:CDS | 60.0% | |
| GTGTGCGCTGGACTGTCTGA+TGG | + | chr1_2:18799802-18799821 | Msa0060860:intron | 60.0% | |
| ATACACGACTGACCCTGCCG+TGG | + | chr1_2:18800123-18800142 | Msa0060860:intron | 60.0% | |
| ! | CACGGGAGTGCACCAGGATA+TGG | - | chr1_2:18801831-18801850 | None:intergenic | 60.0% |
| CATATCCTGGTGCACTCCCG+TGG | + | chr1_2:18801829-18801848 | Msa0060860:CDS | 60.0% | |
| CACTCCCGTGGGCATAGTAG+TGG | + | chr1_2:18801841-18801860 | Msa0060860:exon | 60.0% | |
| TCCCGTGGGCATAGTAGTGG+TGG | + | chr1_2:18801844-18801863 | Msa0060860:exon | 60.0% | |
| ! | TATGCCCACGGGAGTGCACC+AGG | - | chr1_2:18801837-18801856 | None:intergenic | 65.0% |
| CACGACTGACCCTGCCGTGG+CGG | + | chr1_2:18800126-18800145 | Msa0060860:intron | 70.0% | |
| GCGATCACCATGGTGCGGCG+CGG | - | chr1_2:18800159-18800178 | None:intergenic | 70.0% | |
| CGAGGAAAGACGCGGGGCCG+AGG | + | chr1_2:18797607-18797626 | Msa0060860:CDS | 75.0% | |
| AGACGCGGGGCCGAGGAGTG+AGG | + | chr1_2:18797614-18797633 | Msa0060860:CDS | 75.0% | |
| GACCCTGCCGTGGCGGCCAT+AGG | + | chr1_2:18800133-18800152 | Msa0060860:intron | 75.0% | |
| GGCCTATGGCCGCCACGGCA+GGG | - | chr1_2:18800138-18800157 | None:intergenic | 75.0% | |
| CCATGGTGCGGCGCGGCCTA+TGG | - | chr1_2:18800152-18800171 | None:intergenic | 75.0% | |
| CCATAGGCCGCGCCGCACCA+TGG | + | chr1_2:18800149-18800168 | Msa0060860:intron | 75.0% | |
| ! | CGGCCTATGGCCGCCACGGC+AGG | - | chr1_2:18800139-18800158 | None:intergenic | 80.0% |
| ! | GGCGCGGCCTATGGCCGCCA+CGG | - | chr1_2:18800143-18800162 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 18796889 | 18802133 | 18796889 | ID=Msa0060860;Name=Msa0060860 |
| chr1_2 | mRNA | 18796889 | 18802133 | 18796889 | ID=Msa0060860-mRNA-1;Parent=Msa0060860;Name=Msa0060860-mRNA-1;_AED=0.03;_eAED=0.03;_QI=201|1|1|1|1|1|3|276|343 |
| chr1_2 | exon | 18796889 | 18797678 | 18796889 | ID=Msa0060860-mRNA-1:exon:7266;Parent=Msa0060860-mRNA-1 |
| chr1_2 | exon | 18799065 | 18799189 | 18799065 | ID=Msa0060860-mRNA-1:exon:7267;Parent=Msa0060860-mRNA-1 |
| chr1_2 | exon | 18801540 | 18802133 | 18801540 | ID=Msa0060860-mRNA-1:exon:7268;Parent=Msa0060860-mRNA-1 |
| chr1_2 | five_prime_UTR | 18796889 | 18797089 | 18796889 | ID=Msa0060860-mRNA-1:five_prime_utr;Parent=Msa0060860-mRNA-1 |
| chr1_2 | CDS | 18797090 | 18797678 | 18797090 | ID=Msa0060860-mRNA-1:cds;Parent=Msa0060860-mRNA-1 |
| chr1_2 | CDS | 18799065 | 18799189 | 18799065 | ID=Msa0060860-mRNA-1:cds;Parent=Msa0060860-mRNA-1 |
| chr1_2 | CDS | 18801540 | 18801857 | 18801540 | ID=Msa0060860-mRNA-1:cds;Parent=Msa0060860-mRNA-1 |
| chr1_2 | three_prime_UTR | 18801858 | 18802133 | 18801858 | ID=Msa0060860-mRNA-1:three_prime_utr;Parent=Msa0060860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
