AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0944610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0944610 MtrunA17_Chr6g0461441 86.585 82 11 0 9 90 19 100 1.77e-48 149
Msa0944610 MtrunA17_Chr5g0448111 83.333 84 14 0 1 84 1 84 3.52e-48 147
Msa0944610 MtrunA17_Chr7g0253291 61.798 89 31 2 1 88 1 87 6.96e-35 114
Msa0944610 MtrunA17_Chr5g0448171 47.368 76 37 1 1 76 1 73 1.42e-20 77.8
Msa0944610 MtrunA17_Chr3g0107031 46.341 82 38 1 1 76 1 82 1.15e-19 75.9
Msa0944610 MtrunA17_Chr5g0432481 42.697 89 42 2 1 80 1 89 2.64e-19 75.1
Msa0944610 MtrunA17_Chr3g0078131 44.444 81 40 1 1 76 1 81 4.69e-19 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0944610 AT5G18150.1 62.821 78 21 2 1 78 1 70 8.66e-31 103
Msa0944610 AT5G14602.1 57.143 84 32 2 1 84 1 80 4.96e-30 102
Msa0944610 AT5G58375.1 44.048 84 42 2 1 81 1 82 1.07e-16 68.6

Find 32 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACTATTTGTGACTTTA+TGG 0.036151 6_3:+21554447 None:intergenic
AGATGATTCAAAATGGATTT+TGG 0.097169 6_3:-21553569 Msa0944610:CDS
AGAGAGAGATGTGTCCTTTA+AGG 0.173917 6_3:-21554253 Msa0944610:exon
ATTGAAATCCTCTAAGAATT+AGG 0.190751 6_3:-21553478 Msa0944610:exon
ATTGAGTCCCTAATTCTTAG+AGG 0.300143 6_3:+21553470 None:intergenic
AACACCAAGATGAACCTTAA+AGG 0.300317 6_3:+21554239 None:intergenic
GGTGTTCTTCTCTGCGGTTC+TGG 0.325709 6_3:-21554222 Msa0944610:CDS
CTGTCTCAATATGCAAATAA+TGG 0.348611 6_3:-21554543 Msa0944610:five_prime_UTR
ATCTTCACCAAAGATTGATT+TGG 0.357200 6_3:-21554171 Msa0944610:CDS
TTGAAATCCTCTAAGAATTA+GGG 0.358948 6_3:-21553477 Msa0944610:exon
TAAAATTTGTACAAGAATGT+TGG 0.359414 6_3:+21554346 None:intergenic
TCACAAGCCAAATCAATCTT+TGG 0.382003 6_3:+21554164 None:intergenic
AAAATAGTAATTTAGACATA+AGG 0.388030 6_3:+21553346 None:intergenic
TTCTGGCAGGTTACTTTGCA+TGG 0.389470 6_3:-21554205 Msa0944610:CDS
AAAATTTGTACAAGAATGTT+GGG 0.392593 6_3:+21554347 None:intergenic
TGGCTAGTGGAAGGTATCTA+TGG 0.397595 6_3:-21553533 Msa0944610:CDS
GTAATTTAGACATAAGGCTT+TGG 0.399452 6_3:+21553352 None:intergenic
GTGGGTTCAAGAATAATCTT+TGG 0.400788 6_3:-21553424 Msa0944610:three_prime_UTR
TTCTTCTCTGCGGTTCTGGC+AGG 0.404540 6_3:-21554218 Msa0944610:CDS
GTGTCATAAATCCTTGTTTG+TGG 0.445301 6_3:-21553443 Msa0944610:three_prime_UTR
TTTGTACAAGAATGTTGGGT+TGG 0.456163 6_3:+21554351 None:intergenic
GTGTCCTTTAAGGTTCATCT+TGG 0.474313 6_3:-21554243 Msa0944610:CDS
TGTCATAAATCCTTGTTTGT+GGG 0.513684 6_3:-21553442 Msa0944610:three_prime_UTR
GGTATCTATGGAGAAATTTG+AGG 0.538445 6_3:-21553521 Msa0944610:CDS
TTTGTTAGCATTGAATTGAG+AGG 0.552114 6_3:+21553306 None:intergenic
GGCTTGTGATGATTCAATTG+AGG 0.570775 6_3:-21554150 Msa0944610:CDS
AGGTTACTTTGCATGGAGAA+CGG 0.580884 6_3:-21554198 Msa0944610:CDS
GTATTCGTTGACATGGCTAG+TGG 0.585469 6_3:-21553546 Msa0944610:CDS
TATTCTTGAACCCACAAACA+AGG 0.585639 6_3:+21553432 None:intergenic
TGCAAATAATGGCATGCAGT+TGG 0.587358 6_3:-21554532 Msa0944610:five_prime_UTR
CATCTTGGTGTTCTTCTCTG+CGG 0.597461 6_3:-21554228 Msa0944610:CDS
TCGTTGACATGGCTAGTGGA+AGG 0.632760 6_3:-21553542 Msa0944610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTGTTGATATTTT+TGG + chr6_3:21553442-21553461 None:intergenic 10.0%
!!! ATTTTTTATATAATTGATCT+TGG - chr6_3:21553757-21553776 Msa0944610:intron 10.0%
!!! TTATTTTTAATTTTTGTGTT+TGG - chr6_3:21554180-21554199 Msa0944610:CDS 10.0%
!!! TATTTTTTTTGAAAGAAATT+CGG - chr6_3:21554541-21554560 Msa0944610:five_prime_UTR 10.0%
!!! TTTTTTTTTGTTGATATTTT+TGG + chr6_3:21553442-21553461 None:intergenic 10.0%
!!! ATTTTTTATATAATTGATCT+TGG - chr6_3:21553757-21553776 Msa0944610:intron 10.0%
!!! TTATTTTTAATTTTTGTGTT+TGG - chr6_3:21554180-21554199 Msa0944610:CDS 10.0%
!!! TATTTTTTTTGAAAGAAATT+CGG - chr6_3:21554541-21554560 Msa0944610:five_prime_UTR 10.0%
!!! ACATAACTTTAAAAAGATAA+AGG + chr6_3:21553785-21553804 None:intergenic 15.0%
!! AAAATTAAAATTCCAAGATT+TGG + chr6_3:21553841-21553860 None:intergenic 15.0%
!! AATTAATAACTAATGTTGAT+TGG - chr6_3:21553903-21553922 Msa0944610:intron 15.0%
!!! ATTAATAACTAATGTTGATT+GGG - chr6_3:21553904-21553923 Msa0944610:intron 15.0%
!! AAAATAGTAATTTAGACATA+AGG + chr6_3:21554474-21554493 None:intergenic 15.0%
!!! ACATAACTTTAAAAAGATAA+AGG + chr6_3:21553785-21553804 None:intergenic 15.0%
!! AAAATTAAAATTCCAAGATT+TGG + chr6_3:21553841-21553860 None:intergenic 15.0%
!! AATTAATAACTAATGTTGAT+TGG - chr6_3:21553903-21553922 Msa0944610:intron 15.0%
!!! ATTAATAACTAATGTTGATT+GGG - chr6_3:21553904-21553923 Msa0944610:intron 15.0%
!! AAAATAGTAATTTAGACATA+AGG + chr6_3:21554474-21554493 None:intergenic 15.0%
!!! TTTTTGTTTACAATGTCAAA+AGG + chr6_3:21553319-21553338 None:intergenic 20.0%
!!! TTGATATTTTTGGTTTTATG+AGG + chr6_3:21553432-21553451 None:intergenic 20.0%
!! AAAATTTGTACAAGAATGTT+GGG + chr6_3:21553473-21553492 None:intergenic 20.0%
!! TAAAATTTGTACAAGAATGT+TGG + chr6_3:21553474-21553493 None:intergenic 20.0%
!!! TTGTACAAATTTTAATTCGT+GGG - chr6_3:21553480-21553499 Msa0944610:CDS 20.0%
!!! AAAAATCACATTGTTGTTTA+AGG - chr6_3:21553528-21553547 Msa0944610:CDS 20.0%
!!! TAGATGATGTTTTATTGTTA+AGG - chr6_3:21553931-21553950 Msa0944610:intron 20.0%
!!! ATGTTTTATTGTTAAGGTTT+GGG - chr6_3:21553937-21553956 Msa0944610:intron 20.0%
!!! TGTTTTGGTTTTTTAATCAT+GGG - chr6_3:21553986-21554005 Msa0944610:intron 20.0%
!!! ATGATATGCTAATTGATTTT+GGG - chr6_3:21554029-21554048 Msa0944610:intron 20.0%
!!! TTAAATCTTGGAATTTTCTT+TGG - chr6_3:21554121-21554140 Msa0944610:CDS 20.0%
!!! TAAATCTTGGAATTTTCTTT+GGG - chr6_3:21554122-21554141 Msa0944610:CDS 20.0%
!!! TTTTTGTTTACAATGTCAAA+AGG + chr6_3:21553319-21553338 None:intergenic 20.0%
!!! TTGATATTTTTGGTTTTATG+AGG + chr6_3:21553432-21553451 None:intergenic 20.0%
!! AAAATTTGTACAAGAATGTT+GGG + chr6_3:21553473-21553492 None:intergenic 20.0%
!! TAAAATTTGTACAAGAATGT+TGG + chr6_3:21553474-21553493 None:intergenic 20.0%
!!! TTGTACAAATTTTAATTCGT+GGG - chr6_3:21553480-21553499 Msa0944610:CDS 20.0%
!!! AAAAATCACATTGTTGTTTA+AGG - chr6_3:21553528-21553547 Msa0944610:CDS 20.0%
!!! TAGATGATGTTTTATTGTTA+AGG - chr6_3:21553931-21553950 Msa0944610:intron 20.0%
!!! ATGTTTTATTGTTAAGGTTT+GGG - chr6_3:21553937-21553956 Msa0944610:intron 20.0%
!!! TGTTTTGGTTTTTTAATCAT+GGG - chr6_3:21553986-21554005 Msa0944610:intron 20.0%
!!! ATGATATGCTAATTGATTTT+GGG - chr6_3:21554029-21554048 Msa0944610:intron 20.0%
!!! TTAAATCTTGGAATTTTCTT+TGG - chr6_3:21554121-21554140 Msa0944610:CDS 20.0%
!!! TAAATCTTGGAATTTTCTTT+GGG - chr6_3:21554122-21554141 Msa0944610:CDS 20.0%
! AACAACTATTTGTGACTTTA+TGG + chr6_3:21553373-21553392 None:intergenic 25.0%
!!! CTTGTACAAATTTTAATTCG+TGG - chr6_3:21553479-21553498 Msa0944610:CDS 25.0%
!! CAACAATGTGATTTTTATGA+AGG + chr6_3:21553524-21553543 None:intergenic 25.0%
! AGAAAAATCATCTTTCAAGA+AGG - chr6_3:21553691-21553710 Msa0944610:intron 25.0%
!!! GGAAGATTTTGATTTCAAAA+AGG - chr6_3:21553712-21553731 Msa0944610:intron 25.0%
!!! GATGTTTTATTGTTAAGGTT+TGG - chr6_3:21553936-21553955 Msa0944610:intron 25.0%
!!! GTGTTTTGGTTTTTTAATCA+TGG - chr6_3:21553985-21554004 Msa0944610:intron 25.0%
! TTAATCATGGGAATAATGAT+TGG - chr6_3:21553998-21554017 Msa0944610:intron 25.0%
!!! GATGATATGCTAATTGATTT+TGG - chr6_3:21554028-21554047 Msa0944610:intron 25.0%
! ATTCACCAAAATATGTTGAT+TGG - chr6_3:21554076-21554095 Msa0944610:intron 25.0%
!! TTCACCAAAATATGTTGATT+GGG - chr6_3:21554077-21554096 Msa0944610:intron 25.0%
!! TAAACCCAATCAACATATTT+TGG + chr6_3:21554084-21554103 None:intergenic 25.0%
!! AACTCATCAAAATGTTGATT+TGG - chr6_3:21554219-21554238 Msa0944610:CDS 25.0%
!!! ACTCATCAAAATGTTGATTT+GGG - chr6_3:21554220-21554239 Msa0944610:CDS 25.0%
!!! AGATGATTCAAAATGGATTT+TGG - chr6_3:21554248-21554267 Msa0944610:CDS 25.0%
!!! GATGATTCAAAATGGATTTT+GGG - chr6_3:21554249-21554268 Msa0944610:exon 25.0%
!! ATTGAAATCCTCTAAGAATT+AGG - chr6_3:21554339-21554358 Msa0944610:five_prime_UTR 25.0%
!! TTGAAATCCTCTAAGAATTA+GGG - chr6_3:21554340-21554359 Msa0944610:five_prime_UTR 25.0%
! AACAACTATTTGTGACTTTA+TGG + chr6_3:21553373-21553392 None:intergenic 25.0%
!!! CTTGTACAAATTTTAATTCG+TGG - chr6_3:21553479-21553498 Msa0944610:CDS 25.0%
!! CAACAATGTGATTTTTATGA+AGG + chr6_3:21553524-21553543 None:intergenic 25.0%
! AGAAAAATCATCTTTCAAGA+AGG - chr6_3:21553691-21553710 Msa0944610:intron 25.0%
!!! GGAAGATTTTGATTTCAAAA+AGG - chr6_3:21553712-21553731 Msa0944610:intron 25.0%
!!! GATGTTTTATTGTTAAGGTT+TGG - chr6_3:21553936-21553955 Msa0944610:intron 25.0%
!!! GTGTTTTGGTTTTTTAATCA+TGG - chr6_3:21553985-21554004 Msa0944610:intron 25.0%
! TTAATCATGGGAATAATGAT+TGG - chr6_3:21553998-21554017 Msa0944610:intron 25.0%
!!! GATGATATGCTAATTGATTT+TGG - chr6_3:21554028-21554047 Msa0944610:intron 25.0%
! ATTCACCAAAATATGTTGAT+TGG - chr6_3:21554076-21554095 Msa0944610:intron 25.0%
!! TTCACCAAAATATGTTGATT+GGG - chr6_3:21554077-21554096 Msa0944610:intron 25.0%
!! TAAACCCAATCAACATATTT+TGG + chr6_3:21554084-21554103 None:intergenic 25.0%
!! AACTCATCAAAATGTTGATT+TGG - chr6_3:21554219-21554238 Msa0944610:CDS 25.0%
!!! ACTCATCAAAATGTTGATTT+GGG - chr6_3:21554220-21554239 Msa0944610:CDS 25.0%
!!! AGATGATTCAAAATGGATTT+TGG - chr6_3:21554248-21554267 Msa0944610:CDS 25.0%
!!! GATGATTCAAAATGGATTTT+GGG - chr6_3:21554249-21554268 Msa0944610:exon 25.0%
!! ATTGAAATCCTCTAAGAATT+AGG - chr6_3:21554339-21554358 Msa0944610:five_prime_UTR 25.0%
!! TTGAAATCCTCTAAGAATTA+GGG - chr6_3:21554340-21554359 Msa0944610:five_prime_UTR 25.0%
CTGTCTCAATATGCAAATAA+TGG - chr6_3:21553274-21553293 Msa0944610:three_prime_UTR 30.0%
!!! ATTTTTGGTTTTATGAGGAG+AGG + chr6_3:21553427-21553446 None:intergenic 30.0%
ATCTTCACCAAAGATTGATT+TGG - chr6_3:21553646-21553665 Msa0944610:intron 30.0%
! CTTTGTGTTTGATTGTGTTT+TGG - chr6_3:21553971-21553990 Msa0944610:intron 30.0%
! GAGGTTTTCATGTTAAATCT+TGG - chr6_3:21554109-21554128 Msa0944610:CDS 30.0%
! GGTTTTCAGATGATTCAAAA+TGG - chr6_3:21554241-21554260 Msa0944610:CDS 30.0%
! TGTCATAAATCCTTGTTTGT+GGG - chr6_3:21554375-21554394 Msa0944610:five_prime_UTR 30.0%
GTAATTTAGACATAAGGCTT+TGG + chr6_3:21554468-21554487 None:intergenic 30.0%
! TTTGTTAGCATTGAATTGAG+AGG + chr6_3:21554514-21554533 None:intergenic 30.0%
CTGTCTCAATATGCAAATAA+TGG - chr6_3:21553274-21553293 Msa0944610:three_prime_UTR 30.0%
!!! ATTTTTGGTTTTATGAGGAG+AGG + chr6_3:21553427-21553446 None:intergenic 30.0%
ATCTTCACCAAAGATTGATT+TGG - chr6_3:21553646-21553665 Msa0944610:intron 30.0%
! CTTTGTGTTTGATTGTGTTT+TGG - chr6_3:21553971-21553990 Msa0944610:intron 30.0%
! GAGGTTTTCATGTTAAATCT+TGG - chr6_3:21554109-21554128 Msa0944610:CDS 30.0%
! GGTTTTCAGATGATTCAAAA+TGG - chr6_3:21554241-21554260 Msa0944610:CDS 30.0%
! TGTCATAAATCCTTGTTTGT+GGG - chr6_3:21554375-21554394 Msa0944610:five_prime_UTR 30.0%
GTAATTTAGACATAAGGCTT+TGG + chr6_3:21554468-21554487 None:intergenic 30.0%
! TTTGTTAGCATTGAATTGAG+AGG + chr6_3:21554514-21554533 None:intergenic 30.0%
TTTGTACAAGAATGTTGGGT+TGG + chr6_3:21553469-21553488 None:intergenic 35.0%
AACACCAAGATGAACCTTAA+AGG + chr6_3:21553581-21553600 None:intergenic 35.0%
TCACAAGCCAAATCAATCTT+TGG + chr6_3:21553656-21553675 None:intergenic 35.0%
AGTCTTACGAATCCAAATCT+TGG - chr6_3:21553826-21553845 Msa0944610:intron 35.0%
GTTGATTGGGTTTATAGATG+AGG - chr6_3:21554090-21554109 Msa0944610:intron 35.0%
!! CTTGGAATTTTCTTTGGGTT+TGG - chr6_3:21554127-21554146 Msa0944610:CDS 35.0%
!! ATTTTGGGTATTCGTTGACA+TGG - chr6_3:21554264-21554283 Msa0944610:exon 35.0%
GGTATCTATGGAGAAATTTG+AGG - chr6_3:21554296-21554315 Msa0944610:five_prime_UTR 35.0%
ATTGAGTCCCTAATTCTTAG+AGG + chr6_3:21554350-21554369 None:intergenic 35.0%
! GTGTCATAAATCCTTGTTTG+TGG - chr6_3:21554374-21554393 Msa0944610:five_prime_UTR 35.0%
TATTCTTGAACCCACAAACA+AGG + chr6_3:21554388-21554407 None:intergenic 35.0%
GTGGGTTCAAGAATAATCTT+TGG - chr6_3:21554393-21554412 Msa0944610:five_prime_UTR 35.0%
TTTGTACAAGAATGTTGGGT+TGG + chr6_3:21553469-21553488 None:intergenic 35.0%
AACACCAAGATGAACCTTAA+AGG + chr6_3:21553581-21553600 None:intergenic 35.0%
TCACAAGCCAAATCAATCTT+TGG + chr6_3:21553656-21553675 None:intergenic 35.0%
AGTCTTACGAATCCAAATCT+TGG - chr6_3:21553826-21553845 Msa0944610:intron 35.0%
GTTGATTGGGTTTATAGATG+AGG - chr6_3:21554090-21554109 Msa0944610:intron 35.0%
!! CTTGGAATTTTCTTTGGGTT+TGG - chr6_3:21554127-21554146 Msa0944610:CDS 35.0%
!! ATTTTGGGTATTCGTTGACA+TGG - chr6_3:21554264-21554283 Msa0944610:exon 35.0%
GGTATCTATGGAGAAATTTG+AGG - chr6_3:21554296-21554315 Msa0944610:five_prime_UTR 35.0%
ATTGAGTCCCTAATTCTTAG+AGG + chr6_3:21554350-21554369 None:intergenic 35.0%
! GTGTCATAAATCCTTGTTTG+TGG - chr6_3:21554374-21554393 Msa0944610:five_prime_UTR 35.0%
TATTCTTGAACCCACAAACA+AGG + chr6_3:21554388-21554407 None:intergenic 35.0%
GTGGGTTCAAGAATAATCTT+TGG - chr6_3:21554393-21554412 Msa0944610:five_prime_UTR 35.0%
TGCAAATAATGGCATGCAGT+TGG - chr6_3:21553285-21553304 Msa0944610:three_prime_UTR 40.0%
!!! TGGTTTTATGAGGAGAGGAA+AGG + chr6_3:21553422-21553441 None:intergenic 40.0%
AGAGAGAGATGTGTCCTTTA+AGG - chr6_3:21553564-21553583 Msa0944610:CDS 40.0%
!! GTGTCCTTTAAGGTTCATCT+TGG - chr6_3:21553574-21553593 Msa0944610:intron 40.0%
! AGGTTACTTTGCATGGAGAA+CGG - chr6_3:21553619-21553638 Msa0944610:intron 40.0%
GGCTTGTGATGATTCAATTG+AGG - chr6_3:21553667-21553686 Msa0944610:intron 40.0%
TGCAAATAATGGCATGCAGT+TGG - chr6_3:21553285-21553304 Msa0944610:three_prime_UTR 40.0%
!!! TGGTTTTATGAGGAGAGGAA+AGG + chr6_3:21553422-21553441 None:intergenic 40.0%
AGAGAGAGATGTGTCCTTTA+AGG - chr6_3:21553564-21553583 Msa0944610:CDS 40.0%
!! GTGTCCTTTAAGGTTCATCT+TGG - chr6_3:21553574-21553593 Msa0944610:intron 40.0%
! AGGTTACTTTGCATGGAGAA+CGG - chr6_3:21553619-21553638 Msa0944610:intron 40.0%
GGCTTGTGATGATTCAATTG+AGG - chr6_3:21553667-21553686 Msa0944610:intron 40.0%
!! CATCTTGGTGTTCTTCTCTG+CGG - chr6_3:21553589-21553608 Msa0944610:intron 45.0%
! TTCTGGCAGGTTACTTTGCA+TGG - chr6_3:21553612-21553631 Msa0944610:intron 45.0%
GTATTCGTTGACATGGCTAG+TGG - chr6_3:21554271-21554290 Msa0944610:five_prime_UTR 45.0%
!! TGGCTAGTGGAAGGTATCTA+TGG - chr6_3:21554284-21554303 Msa0944610:five_prime_UTR 45.0%
!! CATCTTGGTGTTCTTCTCTG+CGG - chr6_3:21553589-21553608 Msa0944610:intron 45.0%
! TTCTGGCAGGTTACTTTGCA+TGG - chr6_3:21553612-21553631 Msa0944610:intron 45.0%
GTATTCGTTGACATGGCTAG+TGG - chr6_3:21554271-21554290 Msa0944610:five_prime_UTR 45.0%
!! TGGCTAGTGGAAGGTATCTA+TGG - chr6_3:21554284-21554303 Msa0944610:five_prime_UTR 45.0%
!!! AAAATAATAATTTTTTTGAA+GGG + chr6_3:21553742-21553761 None:intergenic 5.0%
!!! AAAAATAATAATTTTTTTGA+AGG + chr6_3:21553743-21553762 None:intergenic 5.0%
!!! AAAATAATAATTTTTTTGAA+GGG + chr6_3:21553742-21553761 None:intergenic 5.0%
!!! AAAAATAATAATTTTTTTGA+AGG + chr6_3:21553743-21553762 None:intergenic 5.0%
TCGTTGACATGGCTAGTGGA+AGG - chr6_3:21554275-21554294 Msa0944610:five_prime_UTR 50.0%
TCGTTGACATGGCTAGTGGA+AGG - chr6_3:21554275-21554294 Msa0944610:five_prime_UTR 50.0%
GGTGTTCTTCTCTGCGGTTC+TGG - chr6_3:21553595-21553614 Msa0944610:intron 55.0%
! TTCTTCTCTGCGGTTCTGGC+AGG - chr6_3:21553599-21553618 Msa0944610:intron 55.0%
GGTGTTCTTCTCTGCGGTTC+TGG - chr6_3:21553595-21553614 Msa0944610:intron 55.0%
! TTCTTCTCTGCGGTTCTGGC+AGG - chr6_3:21553599-21553618 Msa0944610:intron 55.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 21553267 21554572 21553267 ID=Msa0944610;Name=Msa0944610
chr6_3 mRNA 21553267 21554572 21553267 ID=Msa0944610-mRNA-1;Parent=Msa0944610;Name=Msa0944610-mRNA-1;_AED=0.00;_eAED=0.00;_QI=305|1|1|1|1|1|2|212|90
chr6_3 exon 21553267 21553589 21553267 ID=Msa0944610-mRNA-1:exon:6440;Parent=Msa0944610-mRNA-1
chr6_3 exon 21554106 21554572 21554106 ID=Msa0944610-mRNA-1:exon:6439;Parent=Msa0944610-mRNA-1
chr6_3 five_prime_UTR 21554268 21554572 21554268 ID=Msa0944610-mRNA-1:five_prime_utr;Parent=Msa0944610-mRNA-1
chr6_3 CDS 21554106 21554267 21554106 ID=Msa0944610-mRNA-1:cds;Parent=Msa0944610-mRNA-1
chr6_3 CDS 21553479 21553589 21553479 ID=Msa0944610-mRNA-1:cds;Parent=Msa0944610-mRNA-1
chr6_3 three_prime_UTR 21553267 21553478 21553267 ID=Msa0944610-mRNA-1:three_prime_utr;Parent=Msa0944610-mRNA-1
Gene Sequence

>Msa0944610

ATGTGTCCTTTAAGGTTCATCTTGGTGTTCTTCTCTGCGGTTCTGGCAGGTTACTTTGCATGGAGAACGGTTAGATCTTCACCAAAGATTGATTTGGCTTGTGATGATTCAATTGAGGAAGAAAAATCATCTTTCAAGAAGGAAGATTTTGATTTCAAAAAGATGATTCAAAATGGATTTTGGGTATTCGTTGACATGGCTAGTGGAAGGTATCTATGGAGAAATTTGAGGCAAACAAACAAAGATGAAGAATTGAAATCCTCTAAGAATTAG

Protein sequence

>Msa0944610

MCPLRFILVFFSAVLAGYFAWRTVRSSPKIDLACDDSIEEEKSSFKKEDFDFKKMIQNGFWVFVDMASGRYLWRNLRQTNKDEELKSSKN*