Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062430 | XP_013442314.1 | 95.545 | 202 | 8 | 1 | 3 | 203 | 81 | 282 | 1.21e-137 | 396 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062430 | A0A072TFN8 | 95.545 | 202 | 8 | 1 | 3 | 203 | 81 | 282 | 5.76e-138 | 396 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0062430 | Msa0084500 | 0.821866 | 3.215496e-53 | -8.615850e-47 |
| Msa0062430 | Msa0236110 | 0.801102 | 1.054782e-48 | -8.615850e-47 |
| Msa0062430 | Msa0314630 | 0.807430 | 5.073195e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062430 | MtrunA17_Chr1g0162931 | 95.545 | 202 | 8 | 1 | 3 | 203 | 81 | 282 | 1.11e-141 | 396 |
| Msa0062430 | MtrunA17_Chr1g0210911 | 37.549 | 253 | 98 | 15 | 4 | 203 | 86 | 331 | 3.47e-22 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGGATTTAGCAACTATT+TGG | 0.117369 | 1_2:-21872334 | Msa0062430:CDS |
| TGTCCAAAACATAACTAATT+TGG | 0.207226 | 1_2:-21872301 | Msa0062430:CDS |
| AACTAATTTGGACCTATCTT+TGG | 0.259886 | 1_2:-21872289 | Msa0062430:CDS |
| ACAGAAATTTCTTCCCAAAA+AGG | 0.260598 | 1_2:-21874991 | Msa0062430:intron |
| TACTAGAAATTTCATTAATT+AGG | 0.264996 | 1_2:+21872090 | None:intergenic |
| GGTCCAAATTAGTTATGTTT+TGG | 0.275086 | 1_2:+21872298 | None:intergenic |
| ACTTCTCTGAGGGGAAATAT+TGG | 0.286018 | 1_2:+21872386 | None:intergenic |
| AGCAAATCAGTTTCTTGTTT+TGG | 0.290865 | 1_2:+21874164 | None:intergenic |
| CAGAAGATGAAGAAGATATA+AGG | 0.297613 | 1_2:-21872440 | Msa0062430:CDS |
| TACACATATGGATGCATGTT+TGG | 0.329884 | 1_2:-21872222 | Msa0062430:three_prime_UTR |
| TGGATGCATGTTTGGCCATT+TGG | 0.332767 | 1_2:-21872214 | Msa0062430:three_prime_UTR |
| CTGAAATTTGATGTCTGCTT+AGG | 0.354478 | 1_2:-21872129 | Msa0062430:three_prime_UTR |
| CTTCTCTGAGGGGAAATATT+GGG | 0.366143 | 1_2:+21872387 | None:intergenic |
| TTTGTTGTGTTGGTTCTATA+TGG | 0.369011 | 1_2:-21874229 | Msa0062430:CDS |
| TCTGGATTTAGCAACTATTT+GGG | 0.371762 | 1_2:-21872333 | Msa0062430:CDS |
| ATATTCTTTCTCTGCATTCA+AGG | 0.392029 | 1_2:+21874336 | None:intergenic |
| GCAACAGCAGAAGGGAATAA+AGG | 0.396273 | 1_2:-21874255 | Msa0062430:CDS |
| GAATATTATTAATACACATA+TGG | 0.397462 | 1_2:-21872234 | Msa0062430:three_prime_UTR |
| TCCAGAGTTTCTCATATCAT+TGG | 0.405178 | 1_2:+21872350 | None:intergenic |
| AGAAGATGAAGAAGATATAA+GGG | 0.421154 | 1_2:-21872439 | Msa0062430:CDS |
| TTTGGAGATCATGAATCTCT+TGG | 0.423861 | 1_2:-21875040 | Msa0062430:CDS |
| GAGCATGATGATGATGAGTT+TGG | 0.427071 | 1_2:-21875058 | Msa0062430:CDS |
| TTGGTTTATATTTGACAGAT+AGG | 0.444346 | 1_2:-21875114 | None:intergenic |
| ACCTCTTGGAACAAAACATA+TGG | 0.449267 | 1_2:-21872160 | Msa0062430:three_prime_UTR |
| ATGTCTGCTTAGGGAACAAA+AGG | 0.470308 | 1_2:-21872119 | Msa0062430:three_prime_UTR |
| TTAGTACTATTATTCTAGAA+AGG | 0.474883 | 1_2:-21872189 | Msa0062430:three_prime_UTR |
| TGAAATTTGATGTCTGCTTA+GGG | 0.479095 | 1_2:-21872128 | Msa0062430:three_prime_UTR |
| GAGAAGAGAAATTCCCTCTC+AGG | 0.479292 | 1_2:-21874362 | Msa0062430:CDS |
| GCCAATGATATGAGAAACTC+TGG | 0.480081 | 1_2:-21872351 | Msa0062430:CDS |
| ACGTTCAAATGGCCAAAGAT+AGG | 0.495295 | 1_2:+21872277 | None:intergenic |
| ATATAGTTATAACGTTCAAA+TGG | 0.503676 | 1_2:+21872266 | None:intergenic |
| ATAAAGGAGATTTGTTGTGT+TGG | 0.503985 | 1_2:-21874239 | Msa0062430:CDS |
| ATAATAGTACTAAGTCCAAA+TGG | 0.515589 | 1_2:+21872199 | None:intergenic |
| CATGGTTCAGCAACAGCAGA+AGG | 0.534523 | 1_2:-21874264 | Msa0062430:CDS |
| TAGAAAGGTACTATACCTCT+TGG | 0.550901 | 1_2:-21872174 | Msa0062430:three_prime_UTR |
| TTATGATTATGTGCAGGACA+TGG | 0.561583 | 1_2:-21874282 | Msa0062430:CDS |
| ATTGTGAAATATTGTGGTTG+AGG | 0.574028 | 1_2:+21874200 | None:intergenic |
| AAGAAGCATTACTTCTCTGA+GGG | 0.576698 | 1_2:+21872376 | None:intergenic |
| AGATCATGAATCTCTTGGAA+TGG | 0.576715 | 1_2:-21875035 | Msa0062430:CDS |
| GCATTCAAGGATTCCTGAGA+GGG | 0.578921 | 1_2:+21874349 | None:intergenic |
| GGAAAGATTGTGAAATATTG+TGG | 0.582901 | 1_2:+21874194 | None:intergenic |
| ACAAGAAACTGATTTGCTCC+AGG | 0.584537 | 1_2:-21874159 | Msa0062430:intron |
| GAAGATGAAGAAGATATAAG+GGG | 0.601789 | 1_2:-21872438 | Msa0062430:CDS |
| GAAGAAGCATTACTTCTCTG+AGG | 0.630731 | 1_2:+21872375 | None:intergenic |
| TGCATTCAAGGATTCCTGAG+AGG | 0.645375 | 1_2:+21874348 | None:intergenic |
| ATGGTTCAGCAACAGCAGAA+GGG | 0.660060 | 1_2:-21874263 | Msa0062430:CDS |
| AGAAGCATTACTTCTCTGAG+GGG | 0.734541 | 1_2:+21872377 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTAAACCATAAAA+TGG | + | chr1_2:21872756-21872775 | None:intergenic | 10.0% |
| !! | ATAATAATTTCATTAACATT+TGG | - | chr1_2:21872778-21872797 | Msa0062430:intron | 10.0% |
| !! | CATATATAATAAAAAGAATT+AGG | - | chr1_2:21873261-21873280 | Msa0062430:intron | 10.0% |
| !!! | AAAAGATTGTTTTTTATGTA+CGG | + | chr1_2:21872114-21872133 | None:intergenic | 15.0% |
| !!! | AATAATTTCAAACTTTTCAA+AGG | - | chr1_2:21872255-21872274 | Msa0062430:three_prime_UTR | 15.0% |
| !!! | ATTTTCTACAATATTAAGAA+TGG | + | chr1_2:21872516-21872535 | None:intergenic | 15.0% |
| !!! | ATTTTTTAAGAAAAAGTGTT+TGG | - | chr1_2:21872686-21872705 | Msa0062430:intron | 15.0% |
| !! | ATAAAATGGAAAAGTAAAAA+TGG | + | chr1_2:21872742-21872761 | None:intergenic | 15.0% |
| !!! | ATTTTTACTTTTCCATTTTA+TGG | - | chr1_2:21872741-21872760 | Msa0062430:intron | 15.0% |
| !! | AAAATCAATCATATCTTAAT+TGG | + | chr1_2:21873173-21873192 | None:intergenic | 15.0% |
| !!! | ATATAAATCACTTCTTTTAA+TGG | - | chr1_2:21873481-21873500 | Msa0062430:intron | 15.0% |
| !!! | AAGTCTCAATTTTAATAATT+TGG | + | chr1_2:21873867-21873886 | None:intergenic | 15.0% |
| !! | ATTCAATAATAGATGTATAT+GGG | - | chr1_2:21874201-21874220 | Msa0062430:CDS | 15.0% |
| !! | GAATATTATTAATACACATA+TGG | - | chr1_2:21874961-21874980 | Msa0062430:intron | 15.0% |
| !!! | ACATAAAAAACAATCTTTTC+AGG | - | chr1_2:21872115-21872134 | Msa0062430:three_prime_UTR | 20.0% |
| !! | TAAAGAAGAAAATAAAGCTA+TGG | + | chr1_2:21872233-21872252 | None:intergenic | 20.0% |
| !! | ATGGTTCAATTAAGATTATA+CGG | - | chr1_2:21872373-21872392 | Msa0062430:CDS | 20.0% |
| !! | GAATTTATTGAAAAACTTGA+TGG | - | chr1_2:21872643-21872662 | Msa0062430:intron | 20.0% |
| !! | TAATCATAAAAAGTAGTGTA+TGG | + | chr1_2:21872902-21872921 | None:intergenic | 20.0% |
| !!! | ATTTTAACCAAAGTTATGTT+TGG | + | chr1_2:21873203-21873222 | None:intergenic | 20.0% |
| !!! | TTAGGTTATATTTTTATGAG+CGG | - | chr1_2:21873315-21873334 | Msa0062430:intron | 20.0% |
| !!! | ACACAAAATAAAAAAGCATA+GGG | + | chr1_2:21873586-21873605 | None:intergenic | 20.0% |
| !!! | TACACAAAATAAAAAAGCAT+AGG | + | chr1_2:21873587-21873606 | None:intergenic | 20.0% |
| !! | AAAATTATATCCACTTTGAA+AGG | + | chr1_2:21873684-21873703 | None:intergenic | 20.0% |
| !!! | TCAAAGTGGATATAATTTTT+TGG | - | chr1_2:21873685-21873704 | Msa0062430:intron | 20.0% |
| !!! | CAAAGTGGATATAATTTTTT+GGG | - | chr1_2:21873686-21873705 | Msa0062430:intron | 20.0% |
| !!! | AAAGTGGATATAATTTTTTG+GGG | - | chr1_2:21873687-21873706 | Msa0062430:intron | 20.0% |
| !!! | CTCAATTTTAATAATTTGGT+AGG | + | chr1_2:21873863-21873882 | None:intergenic | 20.0% |
| !!! | TTCAATTTCAATATTTTAGC+AGG | + | chr1_2:21873906-21873925 | None:intergenic | 20.0% |
| !! | CATTCAATAATAGATGTATA+TGG | - | chr1_2:21874200-21874219 | Msa0062430:CDS | 20.0% |
| !! | ATCAAATAGGATTAACTTAA+TGG | - | chr1_2:21874363-21874382 | Msa0062430:CDS | 20.0% |
| !!! | GACATGTATATTTTGAAAAA+AGG | + | chr1_2:21874635-21874654 | None:intergenic | 20.0% |
| !!! | ATGCTTTTTTTCATTTAACT+TGG | + | chr1_2:21874701-21874720 | None:intergenic | 20.0% |
| !! | ATATAGTTATAACGTTCAAA+TGG | + | chr1_2:21874932-21874951 | None:intergenic | 20.0% |
| !!! | TTAGTACTATTATTCTAGAA+AGG | - | chr1_2:21875006-21875025 | Msa0062430:CDS | 20.0% |
| ! | ACTTAAAAGTAGTATAGTGT+GGG | - | chr1_2:21872278-21872297 | Msa0062430:exon | 25.0% |
| ! | TAAAAAGTAGTGTATGGATT+TGG | + | chr1_2:21872896-21872915 | None:intergenic | 25.0% |
| !!! | TACTTTTTATGATTATGTGC+AGG | - | chr1_2:21872907-21872926 | Msa0062430:intron | 25.0% |
| !! | TGACACTAACAATAGTTTTT+AGG | - | chr1_2:21873297-21873316 | Msa0062430:intron | 25.0% |
| ! | ATAATCTCATTCAATGATTG+TGG | - | chr1_2:21873522-21873541 | Msa0062430:intron | 25.0% |
| ! | TAATCTCATTCAATGATTGT+GGG | - | chr1_2:21873523-21873542 | Msa0062430:intron | 25.0% |
| ! | TAACATTGTGACAATGAAAT+GGG | + | chr1_2:21873615-21873634 | None:intergenic | 25.0% |
| ! | ATCAAGAAAATCACCAATAA+GGG | + | chr1_2:21873715-21873734 | None:intergenic | 25.0% |
| ! | TATCAAGAAAATCACCAATA+AGG | + | chr1_2:21873716-21873735 | None:intergenic | 25.0% |
| ! | ATTGAAATTGAGAGTTTATG+TGG | - | chr1_2:21873940-21873959 | Msa0062430:intron | 25.0% |
| ! | TTTGACATAAATGCAACAAA+AGG | + | chr1_2:21873992-21874011 | None:intergenic | 25.0% |
| !!! | CTAAAGTCTTATTAGTGAAA+AGG | + | chr1_2:21874019-21874038 | None:intergenic | 25.0% |
| ! | ACTACCTTAACTAAAATGAA+AGG | - | chr1_2:21874040-21874059 | Msa0062430:intron | 25.0% |
| ! | CTACCTTAACTAAAATGAAA+GGG | - | chr1_2:21874041-21874060 | Msa0062430:intron | 25.0% |
| ! | ATACTAGAGATAAGATTAGT+TGG | - | chr1_2:21874084-21874103 | Msa0062430:intron | 25.0% |
| ! | ACATTGTAATAGAAGTGAAT+AGG | + | chr1_2:21874243-21874262 | None:intergenic | 25.0% |
| ! | ATTCACTTCTATTACAATGT+TGG | - | chr1_2:21874243-21874262 | Msa0062430:CDS | 25.0% |
| !!! | AAATTTTTTCAAGACACATG+TGG | - | chr1_2:21874417-21874436 | Msa0062430:intron | 25.0% |
| !!! | AAACCACATTAATTTTGAGA+TGG | - | chr1_2:21874601-21874620 | Msa0062430:intron | 25.0% |
| ! | TTTCCATCTCAAAATTAATG+TGG | + | chr1_2:21874607-21874626 | None:intergenic | 25.0% |
| !!! | CTTTTTTAACATCTTTTTGC+AGG | - | chr1_2:21874672-21874691 | Msa0062430:intron | 25.0% |
| !! | AAAAAGCATGTGAATGAAAT+TGG | - | chr1_2:21874712-21874731 | Msa0062430:intron | 25.0% |
| ! | AGAAGATGAAGAAGATATAA+GGG | - | chr1_2:21874756-21874775 | Msa0062430:intron | 25.0% |
| ! | TGTCCAAAACATAACTAATT+TGG | - | chr1_2:21874894-21874913 | Msa0062430:intron | 25.0% |
| ! | ATAATAGTACTAAGTCCAAA+TGG | + | chr1_2:21874999-21875018 | None:intergenic | 25.0% |
| ACAGAAATTTCTTCCCAAAA+AGG | - | chr1_2:21872204-21872223 | Msa0062430:three_prime_UTR | 30.0% | |
| GACTTAAAAGTAGTATAGTG+TGG | - | chr1_2:21872277-21872296 | Msa0062430:exon | 30.0% | |
| CATTAATTTCAGAATAGCCA+CGG | + | chr1_2:21872562-21872581 | None:intergenic | 30.0% | |
| ! | TTGGACTTTTGCTTGATTTT+AGG | - | chr1_2:21872705-21872724 | Msa0062430:intron | 30.0% |
| ATATTCTTTCTCTGCATTCA+AGG | + | chr1_2:21872862-21872881 | None:intergenic | 30.0% | |
| !! | ATAAAGGAGATTTGTTGTGT+TGG | - | chr1_2:21872956-21872975 | Msa0062430:intron | 30.0% |
| !! | TTTGTTGTGTTGGTTCTATA+TGG | - | chr1_2:21872966-21872985 | Msa0062430:intron | 30.0% |
| ATTGTGAAATATTGTGGTTG+AGG | + | chr1_2:21872998-21873017 | None:intergenic | 30.0% | |
| GGAAAGATTGTGAAATATTG+TGG | + | chr1_2:21873004-21873023 | None:intergenic | 30.0% | |
| !! | AGCAAATCAGTTTCTTGTTT+TGG | + | chr1_2:21873034-21873053 | None:intergenic | 30.0% |
| TTATGTATGGAATAAGTACC+TGG | + | chr1_2:21873057-21873076 | None:intergenic | 30.0% | |
| ! | AAGCATGGATTGATTATGTA+TGG | + | chr1_2:21873070-21873089 | None:intergenic | 30.0% |
| AATAGTAAGACAAGAAAGCA+TGG | + | chr1_2:21873085-21873104 | None:intergenic | 30.0% | |
| !!! | TTACTACTTGCTTTTTGAGT+AGG | - | chr1_2:21873111-21873130 | Msa0062430:intron | 30.0% |
| !!! | TTGCTTTTTGAGTAGGTTAT+GGG | - | chr1_2:21873118-21873137 | Msa0062430:intron | 30.0% |
| TAATTGGAAAATCTCCACTA+TGG | + | chr1_2:21873157-21873176 | None:intergenic | 30.0% | |
| AATCTCATTCAATGATTGTG+GGG | - | chr1_2:21873524-21873543 | Msa0062430:intron | 30.0% | |
| GTAACATTGTGACAATGAAA+TGG | + | chr1_2:21873616-21873635 | None:intergenic | 30.0% | |
| TCAAGAAAATCACCAATAAG+GGG | + | chr1_2:21873714-21873733 | None:intergenic | 30.0% | |
| ! | ATGTGAAGAGAGTTGTTATT+AGG | - | chr1_2:21873753-21873772 | Msa0062430:intron | 30.0% |
| ! | TGTGAAGAGAGTTGTTATTA+GGG | - | chr1_2:21873754-21873773 | Msa0062430:intron | 30.0% |
| CTAATCATTTCTACATTCAG+TGG | - | chr1_2:21873836-21873855 | Msa0062430:intron | 30.0% | |
| !!! | TGTCCCTTTCATTTTAGTTA+AGG | + | chr1_2:21874047-21874066 | None:intergenic | 30.0% |
| TGTATATGGGAAATTCTCTT+TGG | - | chr1_2:21874214-21874233 | Msa0062430:CDS | 30.0% | |
| TACAACGTAACAAATCGAAT+AGG | - | chr1_2:21874294-21874313 | Msa0062430:CDS | 30.0% | |
| !! | GTGGTTTAAGATTTTTCACA+TGG | + | chr1_2:21874588-21874607 | None:intergenic | 30.0% |
| CAGAAGATGAAGAAGATATA+AGG | - | chr1_2:21874755-21874774 | Msa0062430:intron | 30.0% | |
| GAAGATGAAGAAGATATAAG+GGG | - | chr1_2:21874757-21874776 | Msa0062430:intron | 30.0% | |
| TCTGGATTTAGCAACTATTT+GGG | - | chr1_2:21874862-21874881 | Msa0062430:intron | 30.0% | |
| !! | ATTAGTTATGTTTTGGACAG+TGG | + | chr1_2:21874893-21874912 | None:intergenic | 30.0% |
| ! | GGTCCAAATTAGTTATGTTT+TGG | + | chr1_2:21874900-21874919 | None:intergenic | 30.0% |
| AACTAATTTGGACCTATCTT+TGG | - | chr1_2:21874906-21874925 | Msa0062430:intron | 30.0% | |
| TGAAATTTGATGTCTGCTTA+GGG | - | chr1_2:21875067-21875086 | Msa0062430:CDS | 30.0% | |
| TTTGGAGATCATGAATCTCT+TGG | - | chr1_2:21872155-21872174 | Msa0062430:three_prime_UTR | 35.0% | |
| AGATCATGAATCTCTTGGAA+TGG | - | chr1_2:21872160-21872179 | Msa0062430:three_prime_UTR | 35.0% | |
| ! | AAAGCTATGGTGACCTTTTT+GGG | + | chr1_2:21872220-21872239 | None:intergenic | 35.0% |
| ! | TAAAGCTATGGTGACCTTTT+TGG | + | chr1_2:21872221-21872240 | None:intergenic | 35.0% |
| ACACAATACAAGTACTACAC+CGG | + | chr1_2:21872321-21872340 | None:intergenic | 35.0% | |
| GAAAGCTACATTAGTGATTG+CGG | + | chr1_2:21872475-21872494 | None:intergenic | 35.0% | |
| CAATTGACTAAGTGTATGTC+TGG | + | chr1_2:21872600-21872619 | None:intergenic | 35.0% | |
| TTATGATTATGTGCAGGACA+TGG | - | chr1_2:21872913-21872932 | Msa0062430:intron | 35.0% | |
| !!! | CTTGCTTTTTGAGTAGGTTA+TGG | - | chr1_2:21873117-21873136 | Msa0062430:intron | 35.0% |
| !! | GCTTTATTTCACTACCATAG+TGG | - | chr1_2:21873140-21873159 | Msa0062430:intron | 35.0% |
| GTGTAGTCCAAACATAACTT+TGG | - | chr1_2:21873193-21873212 | Msa0062430:intron | 35.0% | |
| ATCTCATTCAATGATTGTGG+GGG | - | chr1_2:21873525-21873544 | Msa0062430:intron | 35.0% | |
| TCAAACTGAGGTCTAAATGA+TGG | + | chr1_2:21873561-21873580 | None:intergenic | 35.0% | |
| TTGTGACAATGAAATGGGAA+AGG | + | chr1_2:21873610-21873629 | None:intergenic | 35.0% | |
| GTAGATTTCACCTTTCAAAG+TGG | - | chr1_2:21873671-21873690 | Msa0062430:intron | 35.0% | |
| AGTTTATGTGGCATGTCTAA+TGG | - | chr1_2:21873952-21873971 | Msa0062430:intron | 35.0% | |
| TGTCTAATGGAAATTCAGAG+TGG | - | chr1_2:21873965-21873984 | Msa0062430:intron | 35.0% | |
| TTAATTGTCTTTCCCTTCCT+TGG | - | chr1_2:21874148-21874167 | Msa0062430:intron | 35.0% | |
| !! | TTTCTAAAGCAACCAAGGAA+GGG | + | chr1_2:21874163-21874182 | None:intergenic | 35.0% |
| !! | ATTTCTAAAGCAACCAAGGA+AGG | + | chr1_2:21874164-21874183 | None:intergenic | 35.0% |
| !! | GATGATTTCTAAAGCAACCA+AGG | + | chr1_2:21874168-21874187 | None:intergenic | 35.0% |
| ! | TGTCTGATAGCGTATCAAAT+AGG | - | chr1_2:21874350-21874369 | Msa0062430:CDS | 35.0% |
| TCTAGTGAGTAAATAGGAAG+TGG | + | chr1_2:21874470-21874489 | None:intergenic | 35.0% | |
| ACTTCCTATTTACTCACTAG+AGG | - | chr1_2:21874469-21874488 | Msa0062430:intron | 35.0% | |
| CTTCCTATTTACTCACTAGA+GGG | - | chr1_2:21874470-21874489 | Msa0062430:intron | 35.0% | |
| TAGAGGGAACTTATGAGAAA+AGG | - | chr1_2:21874486-21874505 | Msa0062430:intron | 35.0% | |
| !! | AAGAAGCATTACTTCTCTGA+GGG | + | chr1_2:21874822-21874841 | None:intergenic | 35.0% |
| TCCAGAGTTTCTCATATCAT+TGG | + | chr1_2:21874848-21874867 | None:intergenic | 35.0% | |
| CTCTGGATTTAGCAACTATT+TGG | - | chr1_2:21874861-21874880 | Msa0062430:intron | 35.0% | |
| TACACATATGGATGCATGTT+TGG | - | chr1_2:21874973-21874992 | Msa0062430:intron | 35.0% | |
| !! | TAGAAAGGTACTATACCTCT+TGG | - | chr1_2:21875021-21875040 | Msa0062430:CDS | 35.0% |
| ACCTCTTGGAACAAAACATA+TGG | - | chr1_2:21875035-21875054 | Msa0062430:CDS | 35.0% | |
| !! | ACCATATGTTTTGTTCCAAG+AGG | + | chr1_2:21875039-21875058 | None:intergenic | 35.0% |
| CTGAAATTTGATGTCTGCTT+AGG | - | chr1_2:21875066-21875085 | Msa0062430:CDS | 35.0% | |
| ! | GAGCATGATGATGATGAGTT+TGG | - | chr1_2:21872137-21872156 | Msa0062430:three_prime_UTR | 40.0% |
| AAAGTAGTATAGTGTGGGCA+TGG | - | chr1_2:21872283-21872302 | Msa0062430:CDS | 40.0% | |
| CACAATACAAGTACTACACC+GGG | + | chr1_2:21872320-21872339 | None:intergenic | 40.0% | |
| GTGTATGTCTGGTATCAAAG+TGG | + | chr1_2:21872589-21872608 | None:intergenic | 40.0% | |
| !!! | GTTTCTTGTTTTGGTAGCAC+AGG | + | chr1_2:21873025-21873044 | None:intergenic | 40.0% |
| !! | ACAAGAAACTGATTTGCTCC+AGG | - | chr1_2:21873036-21873055 | Msa0062430:intron | 40.0% |
| !!! | ATTTTTTGGGGTCCCCTTAT+TGG | - | chr1_2:21873699-21873718 | Msa0062430:intron | 40.0% |
| ! | TTTTGTCACAGTGCAACTCA+TGG | + | chr1_2:21873787-21873806 | None:intergenic | 40.0% |
| GTTCCCTCTAGTGAGTAAAT+AGG | + | chr1_2:21874476-21874495 | None:intergenic | 40.0% | |
| ! | CTTCTCTGAGGGGAAATATT+GGG | + | chr1_2:21874811-21874830 | None:intergenic | 40.0% |
| ! | ACTTCTCTGAGGGGAAATAT+TGG | + | chr1_2:21874812-21874831 | None:intergenic | 40.0% |
| !! | AGAAGCATTACTTCTCTGAG+GGG | + | chr1_2:21874821-21874840 | None:intergenic | 40.0% |
| !! | GAAGAAGCATTACTTCTCTG+AGG | + | chr1_2:21874823-21874842 | None:intergenic | 40.0% |
| GCCAATGATATGAGAAACTC+TGG | - | chr1_2:21874844-21874863 | Msa0062430:intron | 40.0% | |
| ACGTTCAAATGGCCAAAGAT+AGG | + | chr1_2:21874921-21874940 | None:intergenic | 40.0% | |
| ATGTCTGCTTAGGGAACAAA+AGG | - | chr1_2:21875076-21875095 | Msa0062430:CDS | 40.0% | |
| ! | GGCATGGTTTAAAATCGTCC+CGG | - | chr1_2:21872299-21872318 | Msa0062430:CDS | 45.0% |
| CGTGATTACACGAAGTGTGA+TGG | - | chr1_2:21872354-21872373 | Msa0062430:CDS | 45.0% | |
| ATGCATGTTCAGTTTCACCG+TGG | - | chr1_2:21872542-21872561 | Msa0062430:intron | 45.0% | |
| GAGAAGAGAAATTCCCTCTC+AGG | - | chr1_2:21872833-21872852 | Msa0062430:intron | 45.0% | |
| GCATTCAAGGATTCCTGAGA+GGG | + | chr1_2:21872849-21872868 | None:intergenic | 45.0% | |
| TGCATTCAAGGATTCCTGAG+AGG | + | chr1_2:21872850-21872869 | None:intergenic | 45.0% | |
| ATGGTTCAGCAACAGCAGAA+GGG | - | chr1_2:21872932-21872951 | Msa0062430:intron | 45.0% | |
| GCAACAGCAGAAGGGAATAA+AGG | - | chr1_2:21872940-21872959 | Msa0062430:intron | 45.0% | |
| TCACTGAAGTCTAACGCAAG+TGG | + | chr1_2:21873394-21873413 | None:intergenic | 45.0% | |
| ! | AAGCATAGGGCATCAAACTG+AGG | + | chr1_2:21873573-21873592 | None:intergenic | 45.0% |
| TGAGACTTTCTCACGTTCAG+TGG | - | chr1_2:21873879-21873898 | Msa0062430:intron | 45.0% | |
| TGGATGCATGTTTGGCCATT+TGG | - | chr1_2:21874981-21875000 | Msa0062430:intron | 45.0% | |
| CATGGTTCAGCAACAGCAGA+AGG | - | chr1_2:21872931-21872950 | Msa0062430:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 21872092 | 21875125 | 21872092 | ID=Msa0062430;Name=Msa0062430 |
| chr1_2 | mRNA | 21872092 | 21875125 | 21872092 | ID=Msa0062430-mRNA-1;Parent=Msa0062430;Name=Msa0062430-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.66|1|1|1|3|189|203 |
| chr1_2 | exon | 21872092 | 21872523 | 21872092 | ID=Msa0062430-mRNA-1:exon:8105;Parent=Msa0062430-mRNA-1 |
| chr1_2 | exon | 21874160 | 21874394 | 21874160 | ID=Msa0062430-mRNA-1:exon:8104;Parent=Msa0062430-mRNA-1 |
| chr1_2 | exon | 21874992 | 21875125 | 21874992 | ID=Msa0062430-mRNA-1:exon:8103;Parent=Msa0062430-mRNA-1 |
| chr1_2 | CDS | 21874992 | 21875125 | 21874992 | ID=Msa0062430-mRNA-1:cds;Parent=Msa0062430-mRNA-1 |
| chr1_2 | CDS | 21874160 | 21874394 | 21874160 | ID=Msa0062430-mRNA-1:cds;Parent=Msa0062430-mRNA-1 |
| chr1_2 | CDS | 21872281 | 21872523 | 21872281 | ID=Msa0062430-mRNA-1:cds;Parent=Msa0062430-mRNA-1 |
| chr1_2 | three_prime_UTR | 21872092 | 21872280 | 21872092 | ID=Msa0062430-mRNA-1:three_prime_utr;Parent=Msa0062430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
