Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0236110 | KEH36676.1 | 65.929 | 226 | 26 | 1 | 4 | 229 | 130 | 304 | 3.49e-92 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0236110 | sp|Q9C7N4|GDL15_ARATH | 41.250 | 240 | 122 | 4 | 4 | 225 | 124 | 362 | 1.25e-58 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0236110 | A0A072V4A2 | 60.345 | 232 | 82 | 1 | 4 | 225 | 129 | 360 | 4.20e-92 | 284 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0236110 | 0.800992 | 1.110979e-48 | -8.615850e-47 |
| Msa0003040 | Msa0236110 | 0.827289 | 1.698783e-54 | -8.615850e-47 |
| Msa0012440 | Msa0236110 | 0.812758 | 3.608100e-51 | -8.615850e-47 |
| Msa0036430 | Msa0236110 | 0.867713 | 1.117494e-65 | -8.615850e-47 |
| Msa0050040 | Msa0236110 | 0.821953 | 3.069197e-53 | -8.615850e-47 |
| Msa0057240 | Msa0236110 | 0.807872 | 4.088704e-50 | -8.615850e-47 |
| Msa0062430 | Msa0236110 | 0.801102 | 1.054782e-48 | -8.615850e-47 |
| Msa0080990 | Msa0236110 | 0.801789 | 7.629169e-49 | -8.615850e-47 |
| Msa0084500 | Msa0236110 | 0.874439 | 6.746140e-68 | -8.615850e-47 |
| Msa0102990 | Msa0236110 | 0.822967 | 1.784317e-53 | -8.615850e-47 |
| Msa0106790 | Msa0236110 | 0.847720 | 9.675068e-60 | -8.615850e-47 |
| Msa0130570 | Msa0236110 | 0.851597 | 8.000129e-61 | -8.615850e-47 |
| Msa0146920 | Msa0236110 | 0.841137 | 5.701891e-58 | -8.615850e-47 |
| Msa0149560 | Msa0236110 | 0.812645 | 3.820790e-51 | -8.615850e-47 |
| Msa0153420 | Msa0236110 | 0.812553 | 4.000569e-51 | -8.615850e-47 |
| Msa0173090 | Msa0236110 | 0.802840 | 4.635596e-49 | -8.615850e-47 |
| Msa0176470 | Msa0236110 | 0.875687 | 2.531270e-68 | -8.615850e-47 |
| Msa0191040 | Msa0236110 | 0.864741 | 9.772393e-65 | -8.615850e-47 |
| Msa0194380 | Msa0236110 | 0.915720 | 4.207893e-85 | -8.615850e-47 |
| Msa0203030 | Msa0236110 | 0.832091 | 1.152035e-55 | -8.615850e-47 |
| Msa0206800 | Msa0236110 | 0.857534 | 1.529086e-62 | -8.615850e-47 |
| Msa0219190 | Msa0236110 | 0.840326 | 9.303120e-58 | -8.615850e-47 |
| Msa0220300 | Msa0236110 | 0.806232 | 9.092317e-50 | -8.615850e-47 |
| Msa0221090 | Msa0236110 | 0.809271 | 2.054766e-50 | -8.615850e-47 |
| Msa0233340 | Msa0236110 | 0.864262 | 1.380245e-64 | -8.615850e-47 |
| Msa0236110 | Msa0242540 | 0.801361 | 9.338079e-49 | -8.615850e-47 |
| Msa0236110 | Msa0251240 | 0.809893 | 1.510334e-50 | -8.615850e-47 |
| Msa0236110 | Msa0262560 | 0.806870 | 6.666897e-50 | -8.615850e-47 |
| Msa0236110 | Msa0273990 | 0.969900 | 8.305092e-131 | -8.615850e-47 |
| Msa0236110 | Msa0277290 | 0.848635 | 5.406745e-60 | -8.615850e-47 |
| Msa0236110 | Msa0288190 | 0.832447 | 9.402519e-56 | -8.615850e-47 |
| Msa0236110 | Msa0288200 | 0.858575 | 7.496172e-63 | -8.615850e-47 |
| Msa0236110 | Msa0298240 | 0.840150 | 1.034029e-57 | -8.615850e-47 |
| Msa0236110 | Msa0301200 | 0.803259 | 3.797041e-49 | -8.615850e-47 |
| Msa0236110 | Msa0311690 | 0.871544 | 6.304024e-67 | -8.615850e-47 |
| Msa0236110 | Msa0311790 | 0.802871 | 4.566785e-49 | -8.615850e-47 |
| Msa0236110 | Msa0314630 | 0.994963 | 9.150382e-212 | -8.615850e-47 |
| Msa0236110 | Msa0315250 | 0.804233 | 2.383033e-49 | -8.615850e-47 |
| Msa0236110 | Msa0322830 | 0.868483 | 6.314769e-66 | -8.615850e-47 |
| Msa0236110 | Msa0322840 | 0.818187 | 2.233900e-52 | -8.615850e-47 |
| Msa0236110 | Msa0322860 | 0.858624 | 7.251127e-63 | -8.615850e-47 |
| Msa0236110 | Msa0326540 | 0.861598 | 9.168149e-64 | -8.615850e-47 |
| Msa0236110 | Msa0329620 | 0.800564 | 1.358447e-48 | -8.615850e-47 |
| Msa0236110 | Msa0331530 | 0.840752 | 7.197592e-58 | -8.615850e-47 |
| Msa0236110 | Msa0331540 | 0.826832 | 2.184517e-54 | -8.615850e-47 |
| Msa0236110 | Msa0351770 | 0.825408 | 4.763917e-54 | -8.615850e-47 |
| Msa0236110 | Msa0359250 | 0.803328 | 3.673527e-49 | -8.615850e-47 |
| Msa0236110 | Msa0373960 | 0.828752 | 7.547282e-55 | -8.615850e-47 |
| Msa0236110 | Msa0382010 | 0.804313 | 2.293394e-49 | -8.615850e-47 |
| Msa0236110 | Msa0413930 | 0.801784 | 7.648498e-49 | -8.615850e-47 |
| Msa0236110 | Msa0423100 | 0.827219 | 1.765046e-54 | -8.615850e-47 |
| Msa0236110 | Msa0436500 | 0.835108 | 2.033045e-56 | -8.615850e-47 |
| Msa0236110 | Msa0444010 | 0.808273 | 3.358663e-50 | -8.615850e-47 |
| Msa0236110 | Msa0464540 | 0.810373 | 1.190312e-50 | -8.615850e-47 |
| Msa0236110 | Msa0469260 | 0.835059 | 2.091641e-56 | -8.615850e-47 |
| Msa0236110 | Msa0476590 | 0.815425 | 9.307399e-52 | -8.615850e-47 |
| Msa0236110 | Msa0490480 | 0.807117 | 5.911637e-50 | -8.615850e-47 |
| Msa0236110 | Msa0520510 | 0.851325 | 9.550518e-61 | -8.615850e-47 |
| Msa0236110 | Msa0534590 | 0.806823 | 6.821817e-50 | -8.615850e-47 |
| Msa0236110 | Msa0560070 | 0.805609 | 1.228851e-49 | -8.615850e-47 |
| Msa0236110 | Msa0575740 | 0.844001 | 9.906521e-59 | -8.615850e-47 |
| Msa0236110 | Msa0590800 | 0.811731 | 6.045601e-51 | -8.615850e-47 |
| Msa0236110 | Msa0622410 | 0.800331 | 1.515593e-48 | -8.615850e-47 |
| Msa0236110 | Msa0663680 | 0.816787 | 4.617778e-52 | -8.615850e-47 |
| Msa0236110 | Msa0666030 | 0.800394 | 1.471434e-48 | -8.615850e-47 |
| Msa0236110 | Msa0667850 | 0.821572 | 3.759321e-53 | -8.615850e-47 |
| Msa0236110 | Msa0669340 | 0.802274 | 6.063975e-49 | -8.615850e-47 |
| Msa0236110 | Msa0669840 | 0.804531 | 2.065641e-49 | -8.615850e-47 |
| Msa0236110 | Msa0682530 | 0.827126 | 1.858405e-54 | -8.615850e-47 |
| Msa0236110 | Msa0691160 | 0.839363 | 1.657666e-57 | -8.615850e-47 |
| Msa0236110 | Msa0716450 | 0.803888 | 2.811015e-49 | -8.615850e-47 |
| Msa0236110 | Msa0741900 | 0.815191 | 1.049030e-51 | -8.615850e-47 |
| Msa0236110 | Msa0742180 | 0.814506 | 1.488228e-51 | -8.615850e-47 |
| Msa0236110 | Msa0748000 | 0.800099 | 1.689207e-48 | -8.615850e-47 |
| Msa0236110 | Msa0786040 | 0.804898 | 1.731476e-49 | -8.615850e-47 |
| Msa0236110 | Msa0810020 | 0.822808 | 1.943168e-53 | -8.615850e-47 |
| Msa0236110 | Msa0823400 | 0.818950 | 1.499852e-52 | -8.615850e-47 |
| Msa0236110 | Msa0862100 | 0.810973 | 8.831661e-51 | -8.615850e-47 |
| Msa0236110 | Msa0870620 | 0.802529 | 5.372681e-49 | -8.615850e-47 |
| Msa0236110 | Msa0880710 | 0.850793 | 1.349043e-60 | -8.615850e-47 |
| Msa0236110 | Msa0885060 | 0.839789 | 1.284277e-57 | -8.615850e-47 |
| Msa0236110 | Msa0929870 | 0.835287 | 1.832372e-56 | -8.615850e-47 |
| Msa0236110 | Msa0936410 | 0.800448 | 1.434366e-48 | -8.615850e-47 |
| Msa0236110 | Msa0941960 | 0.800195 | 1.615324e-48 | -8.615850e-47 |
| Msa0236110 | Msa0946210 | 0.815101 | 1.098537e-51 | -8.615850e-47 |
| Msa0236110 | Msa0961560 | 0.800769 | 1.233809e-48 | -8.615850e-47 |
| Msa0236110 | Msa0973250 | 0.818809 | 1.614855e-52 | -8.615850e-47 |
| Msa0236110 | Msa0979510 | 0.880036 | 7.640188e-70 | -8.615850e-47 |
| Msa0236110 | Msa0999300 | 0.805494 | 1.298994e-49 | -8.615850e-47 |
| Msa0236110 | Msa0999340 | 0.823488 | 1.348577e-53 | -8.615850e-47 |
| Msa0236110 | Msa0999350 | 0.831328 | 1.776311e-55 | -8.615850e-47 |
| Msa0236110 | Msa0999360 | 0.819890 | 9.159482e-53 | -8.615850e-47 |
| Msa0236110 | Msa0999390 | 0.802388 | 5.745211e-49 | -8.615850e-47 |
| Msa0236110 | Msa0999400 | 0.824084 | 9.778112e-54 | -8.615850e-47 |
| Msa0236110 | Msa0999410 | 0.805287 | 1.435934e-49 | -8.615850e-47 |
| Msa0236110 | Msa1006830 | 0.848221 | 7.038330e-60 | -8.615850e-47 |
| Msa0236110 | Msa1010110 | 0.805390 | 1.366035e-49 | -8.615850e-47 |
| Msa0236110 | Msa1033560 | 0.836573 | 8.643530e-57 | -8.615850e-47 |
| Msa0236110 | Msa1042670 | 0.817597 | 3.036471e-52 | -8.615850e-47 |
| Msa0236110 | Msa1055500 | 0.803025 | 4.244948e-49 | -8.615850e-47 |
| Msa0236110 | Msa1073340 | 0.863679 | 2.095266e-64 | -8.615850e-47 |
| Msa0236110 | Msa1073350 | 0.816930 | 4.290659e-52 | -8.615850e-47 |
| Msa0236110 | Msa1081570 | 0.808785 | 2.611689e-50 | -8.615850e-47 |
| Msa0236110 | Msa1098560 | 0.802342 | 5.870667e-49 | -8.615850e-47 |
| Msa0236110 | Msa1112870 | 0.813220 | 2.857476e-51 | -8.615850e-47 |
| Msa0236110 | Msa1113850 | 0.868657 | 5.547499e-66 | -8.615850e-47 |
| Msa0236110 | Msa1123880 | 0.802535 | 5.358518e-49 | -8.615850e-47 |
| Msa0236110 | Msa1127140 | 0.809951 | 1.467965e-50 | -8.615850e-47 |
| Msa0236110 | Msa1145020 | 0.828111 | 1.077822e-54 | -8.615850e-47 |
| Msa0236110 | Msa1160400 | 0.822201 | 2.688238e-53 | -8.615850e-47 |
| Msa0236110 | Msa1169990 | 0.832468 | 9.293704e-56 | -8.615850e-47 |
| Msa0236110 | Msa1174110 | 0.806229 | 9.104584e-50 | -8.615850e-47 |
| Msa0236110 | Msa1174410 | 0.810416 | 1.165190e-50 | -8.615850e-47 |
| Msa0236110 | Msa1176160 | 0.801171 | 1.021265e-48 | -8.615850e-47 |
| Msa0236110 | Msa1201110 | 0.824080 | 9.797556e-54 | -8.615850e-47 |
| Msa0236110 | Msa1201160 | 0.830539 | 2.774480e-55 | -8.615850e-47 |
| Msa0236110 | Msa1217940 | 0.803135 | 4.027024e-49 | -8.615850e-47 |
| Msa0236110 | Msa1218480 | 0.854450 | 1.220920e-61 | -8.615850e-47 |
| Msa0236110 | Msa1227340 | 0.828195 | 1.029179e-54 | -8.615850e-47 |
| Msa0236110 | Msa1227970 | 0.805333 | 1.404299e-49 | -8.615850e-47 |
| Msa0236110 | Msa1228190 | 0.834743 | 2.512770e-56 | -8.615850e-47 |
| Msa0236110 | Msa1228610 | 0.814725 | 1.330717e-51 | -8.615850e-47 |
| Msa0236110 | Msa1234280 | 0.801231 | 9.924669e-49 | -8.615850e-47 |
| Msa0236110 | Msa1271260 | 0.845505 | 3.894145e-59 | -8.615850e-47 |
| Msa0236110 | Msa1292040 | 0.845970 | 2.913022e-59 | -8.615850e-47 |
| Msa0236110 | Msa1294290 | 0.838772 | 2.357225e-57 | -8.615850e-47 |
| Msa0236110 | Msa1307190 | 0.804406 | 2.193657e-49 | -8.615850e-47 |
| Msa0236110 | Msa1345420 | 0.870071 | 1.924411e-66 | -8.615850e-47 |
| Msa0236110 | Msa1379970 | 0.833543 | 5.022141e-56 | -8.615850e-47 |
| Msa0236110 | Msa1390850 | 0.801939 | 7.105202e-49 | -8.615850e-47 |
| Msa0236110 | Msa1420060 | 0.861240 | 1.178929e-63 | -8.615850e-47 |
| Msa0236110 | Msa1421550 | 0.857327 | 1.760316e-62 | -8.615850e-47 |
| Msa0236110 | Msa1424690 | 0.824690 | 7.040800e-54 | -8.615850e-47 |
| Msa0236110 | Msa1429420 | 0.813129 | 2.992043e-51 | -8.615850e-47 |
| Msa0236110 | Msa1435480 | 0.841479 | 4.633897e-58 | -8.615850e-47 |
| Msa0236110 | Msa1440340 | 0.843652 | 1.228244e-58 | -8.615850e-47 |
| Msa0236110 | Msa1442630 | 0.857067 | 2.100392e-62 | -8.615850e-47 |
| Msa0236110 | Msa1446520 | 0.827449 | 1.555260e-54 | -8.615850e-47 |
| Msa0236110 | Msa1458910 | 0.817331 | 3.486461e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0236110 | MtrunA17_Chr2g0284921 | 60.345 | 232 | 82 | 1 | 4 | 225 | 129 | 360 | 8.10e-96 | 284 |
| Msa0236110 | MtrunA17_Chr2g0284991 | 52.743 | 237 | 100 | 2 | 1 | 225 | 123 | 359 | 2.80e-81 | 248 |
| Msa0236110 | MtrunA17_Chr2g0284951 | 51.667 | 240 | 99 | 4 | 1 | 228 | 123 | 357 | 1.83e-78 | 240 |
| Msa0236110 | MtrunA17_Chr3g0085881 | 52.586 | 232 | 96 | 3 | 4 | 225 | 125 | 352 | 3.46e-78 | 239 |
| Msa0236110 | MtrunA17_Chr2g0285001 | 49.791 | 239 | 108 | 2 | 2 | 228 | 125 | 363 | 4.97e-78 | 239 |
| Msa0236110 | MtrunA17_Chr2g0284941 | 47.899 | 238 | 93 | 3 | 2 | 228 | 124 | 341 | 2.85e-69 | 216 |
| Msa0236110 | MtrunA17_Chr8g0380031 | 46.320 | 231 | 113 | 5 | 4 | 225 | 177 | 405 | 9.36e-69 | 216 |
| Msa0236110 | MtrunA17_Chr2g0284931 | 47.660 | 235 | 96 | 2 | 4 | 228 | 5 | 222 | 8.41e-68 | 208 |
| Msa0236110 | MtrunA17_Chr8g0380041 | 42.739 | 241 | 118 | 5 | 4 | 225 | 123 | 362 | 4.34e-61 | 195 |
| Msa0236110 | MtrunA17_Chr2g0285061 | 38.174 | 241 | 129 | 5 | 4 | 225 | 125 | 364 | 2.55e-52 | 172 |
| Msa0236110 | MtrunA17_Chr3g0086641 | 38.174 | 241 | 128 | 7 | 4 | 225 | 131 | 369 | 2.75e-51 | 170 |
| Msa0236110 | MtrunA17_Chr3g0077571 | 39.070 | 215 | 109 | 5 | 29 | 225 | 146 | 356 | 2.85e-47 | 159 |
| Msa0236110 | MtrunA17_Chr2g0285041 | 87.805 | 82 | 10 | 0 | 4 | 85 | 42 | 123 | 1.48e-44 | 146 |
| Msa0236110 | MtrunA17_Chr2g0285031 | 77.922 | 77 | 17 | 0 | 153 | 229 | 5 | 81 | 1.50e-38 | 128 |
| Msa0236110 | MtrunA17_Chr3g0131321 | 35.510 | 245 | 132 | 8 | 4 | 225 | 127 | 368 | 3.58e-38 | 136 |
| Msa0236110 | MtrunA17_Chr3g0077581 | 33.745 | 243 | 136 | 7 | 4 | 224 | 129 | 368 | 1.84e-37 | 134 |
| Msa0236110 | MtrunA17_Chr7g0275011 | 36.410 | 195 | 106 | 4 | 24 | 200 | 148 | 342 | 4.24e-35 | 128 |
| Msa0236110 | MtrunA17_Chr6g0455661 | 35.096 | 208 | 115 | 4 | 35 | 225 | 267 | 471 | 1.03e-33 | 125 |
| Msa0236110 | MtrunA17_Chr6g0459921 | 33.333 | 240 | 139 | 5 | 4 | 225 | 124 | 360 | 1.28e-33 | 124 |
| Msa0236110 | MtrunA17_Chr4g0008851 | 33.628 | 226 | 116 | 6 | 24 | 223 | 146 | 363 | 1.70e-33 | 124 |
| Msa0236110 | MtrunA17_Chr7g0275021 | 32.821 | 195 | 109 | 3 | 24 | 198 | 148 | 340 | 2.16e-33 | 123 |
| Msa0236110 | MtrunA17_Chr5g0434621 | 34.112 | 214 | 121 | 5 | 12 | 208 | 129 | 339 | 4.77e-33 | 122 |
| Msa0236110 | MtrunA17_Chr4g0017431 | 32.018 | 228 | 131 | 5 | 20 | 225 | 137 | 362 | 8.00e-33 | 122 |
| Msa0236110 | MtrunA17_Chr7g0274991 | 33.028 | 218 | 126 | 4 | 24 | 223 | 147 | 362 | 9.03e-33 | 122 |
| Msa0236110 | MtrunA17_Chr7g0215961 | 33.516 | 182 | 103 | 2 | 37 | 200 | 147 | 328 | 9.23e-32 | 119 |
| Msa0236110 | MtrunA17_Chr1g0189901 | 32.536 | 209 | 117 | 4 | 11 | 195 | 126 | 334 | 6.73e-31 | 117 |
| Msa0236110 | MtrunA17_Chr1g0189891 | 32.984 | 191 | 116 | 2 | 20 | 198 | 140 | 330 | 1.52e-30 | 115 |
| Msa0236110 | MtrunA17_Chr6g0457921 | 33.333 | 192 | 110 | 2 | 27 | 200 | 147 | 338 | 3.66e-30 | 114 |
| Msa0236110 | MtrunA17_Chr7g0275001 | 32.524 | 206 | 111 | 5 | 14 | 198 | 134 | 332 | 1.19e-29 | 113 |
| Msa0236110 | MtrunA17_Chr1g0182811 | 32.812 | 192 | 109 | 4 | 29 | 200 | 153 | 344 | 2.78e-29 | 112 |
| Msa0236110 | MtrunA17_Chr4g0060811 | 34.951 | 206 | 107 | 6 | 16 | 202 | 140 | 337 | 4.10e-29 | 112 |
| Msa0236110 | MtrunA17_Chr1g0189931 | 32.432 | 185 | 107 | 3 | 29 | 195 | 151 | 335 | 4.23e-29 | 112 |
| Msa0236110 | MtrunA17_Chr4g0068441 | 31.839 | 223 | 129 | 7 | 24 | 225 | 147 | 367 | 1.21e-27 | 108 |
| Msa0236110 | MtrunA17_Chr3g0092131 | 32.812 | 192 | 109 | 4 | 29 | 202 | 144 | 333 | 1.94e-27 | 107 |
| Msa0236110 | MtrunA17_Chr3g0085231 | 34.300 | 207 | 105 | 5 | 36 | 225 | 157 | 349 | 4.52e-24 | 98.2 |
| Msa0236110 | MtrunA17_Chr5g0438621 | 30.348 | 201 | 113 | 7 | 26 | 202 | 143 | 340 | 9.92e-24 | 97.4 |
| Msa0236110 | MtrunA17_Chr5g0396511 | 26.778 | 239 | 153 | 6 | 4 | 223 | 141 | 376 | 1.53e-22 | 94.4 |
| Msa0236110 | MtrunA17_Chr2g0320671 | 28.571 | 217 | 130 | 7 | 7 | 202 | 128 | 340 | 3.73e-22 | 92.8 |
| Msa0236110 | MtrunA17_Chr2g0294301 | 30.500 | 200 | 118 | 6 | 24 | 202 | 147 | 346 | 4.40e-22 | 92.8 |
| Msa0236110 | MtrunA17_Chr2g0294311 | 27.928 | 222 | 137 | 6 | 24 | 225 | 154 | 372 | 5.48e-22 | 92.8 |
| Msa0236110 | MtrunA17_Chr8g0374101 | 25.941 | 239 | 152 | 8 | 7 | 223 | 138 | 373 | 2.11e-20 | 88.6 |
| Msa0236110 | MtrunA17_Chr5g0438631 | 28.272 | 191 | 114 | 4 | 29 | 198 | 147 | 335 | 8.04e-20 | 86.7 |
| Msa0236110 | MtrunA17_Chr8g0370961 | 25.974 | 231 | 134 | 8 | 20 | 224 | 24 | 243 | 1.33e-19 | 84.3 |
| Msa0236110 | MtrunA17_Chr1g0156911 | 27.751 | 209 | 126 | 7 | 19 | 204 | 143 | 349 | 6.57e-19 | 84.0 |
| Msa0236110 | MtrunA17_Chr8g0370951 | 27.624 | 181 | 104 | 7 | 37 | 195 | 164 | 339 | 7.66e-19 | 84.0 |
| Msa0236110 | MtrunA17_Chr5g0444401 | 27.854 | 219 | 131 | 7 | 24 | 223 | 149 | 359 | 3.90e-18 | 82.0 |
| Msa0236110 | MtrunA17_Chr3g0105401 | 29.279 | 222 | 131 | 7 | 5 | 202 | 120 | 339 | 4.78e-18 | 81.6 |
| Msa0236110 | MtrunA17_Chr3g0142921 | 26.961 | 204 | 121 | 6 | 18 | 197 | 142 | 341 | 1.55e-17 | 80.1 |
| Msa0236110 | MtrunA17_Chr1g0156891 | 28.358 | 201 | 120 | 6 | 19 | 197 | 150 | 348 | 3.35e-17 | 79.3 |
| Msa0236110 | MtrunA17_Chr5g0405821 | 29.016 | 193 | 112 | 5 | 37 | 207 | 172 | 361 | 3.89e-17 | 79.3 |
| Msa0236110 | MtrunA17_Chr5g0440501 | 22.273 | 220 | 145 | 5 | 31 | 225 | 32 | 250 | 8.42e-17 | 77.0 |
| Msa0236110 | MtrunA17_Chr5g0438641 | 29.082 | 196 | 113 | 7 | 29 | 202 | 151 | 342 | 2.27e-16 | 77.0 |
| Msa0236110 | MtrunA17_Chr2g0330781 | 26.728 | 217 | 135 | 6 | 7 | 202 | 129 | 342 | 2.28e-16 | 77.0 |
| Msa0236110 | MtrunA17_Chr1g0156931 | 27.000 | 200 | 119 | 7 | 19 | 195 | 147 | 342 | 2.76e-16 | 76.6 |
| Msa0236110 | MtrunA17_Chr8g0371471 | 26.000 | 200 | 123 | 6 | 19 | 195 | 147 | 344 | 3.07e-16 | 76.6 |
| Msa0236110 | MtrunA17_Chr3g0099161 | 28.095 | 210 | 120 | 7 | 35 | 223 | 224 | 423 | 3.51e-16 | 76.6 |
| Msa0236110 | MtrunA17_Chr3g0120861 | 29.744 | 195 | 113 | 6 | 29 | 202 | 157 | 348 | 3.62e-16 | 76.3 |
| Msa0236110 | MtrunA17_Chr1g0156901 | 25.116 | 215 | 137 | 6 | 5 | 197 | 142 | 354 | 3.75e-16 | 76.3 |
| Msa0236110 | MtrunA17_Chr1g0156921 | 27.778 | 180 | 102 | 5 | 41 | 197 | 173 | 347 | 7.71e-16 | 75.5 |
| Msa0236110 | MtrunA17_Chr3g0142941 | 26.733 | 202 | 122 | 7 | 19 | 197 | 153 | 351 | 1.09e-15 | 75.1 |
| Msa0236110 | MtrunA17_Chr2g0284981 | 52.308 | 65 | 31 | 0 | 161 | 225 | 15 | 79 | 1.16e-15 | 70.1 |
| Msa0236110 | MtrunA17_Chr4g0027521 | 26.633 | 199 | 119 | 5 | 24 | 198 | 141 | 336 | 1.78e-15 | 74.3 |
| Msa0236110 | MtrunA17_Chr8g0344931 | 25.311 | 241 | 156 | 7 | 2 | 225 | 127 | 360 | 1.82e-15 | 74.3 |
| Msa0236110 | MtrunA17_Chr4g0027571 | 27.692 | 195 | 119 | 5 | 24 | 198 | 14 | 206 | 3.73e-15 | 72.0 |
| Msa0236110 | MtrunA17_Chr3g0099151 | 27.536 | 207 | 124 | 7 | 36 | 223 | 220 | 419 | 1.00e-14 | 72.4 |
| Msa0236110 | MtrunA17_Chr3g0099231 | 26.066 | 211 | 131 | 7 | 36 | 228 | 160 | 363 | 1.15e-14 | 72.4 |
| Msa0236110 | MtrunA17_Chr5g0405831 | 27.083 | 192 | 117 | 6 | 37 | 207 | 171 | 360 | 4.46e-14 | 70.5 |
| Msa0236110 | MtrunA17_Chr8g0371481 | 24.876 | 201 | 125 | 7 | 19 | 195 | 147 | 345 | 8.58e-14 | 69.7 |
| Msa0236110 | MtrunA17_Chr4g0046151 | 25.000 | 220 | 133 | 7 | 4 | 195 | 131 | 346 | 8.82e-14 | 69.7 |
| Msa0236110 | MtrunA17_Chr2g0283191 | 24.272 | 206 | 116 | 7 | 27 | 195 | 148 | 350 | 1.72e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0236110 | AT1G29670.1 | 41.250 | 240 | 122 | 4 | 4 | 225 | 124 | 362 | 1.28e-59 | 192 |
| Msa0236110 | AT1G29670.2 | 41.250 | 240 | 122 | 4 | 4 | 225 | 192 | 430 | 1.04e-58 | 191 |
| Msa0236110 | AT1G29660.1 | 40.664 | 241 | 123 | 4 | 4 | 225 | 124 | 363 | 1.39e-57 | 186 |
| Msa0236110 | AT5G45670.1 | 38.333 | 240 | 128 | 5 | 4 | 224 | 122 | 360 | 1.42e-52 | 174 |
| Msa0236110 | AT4G18970.1 | 39.004 | 241 | 127 | 5 | 4 | 225 | 121 | 360 | 9.73e-52 | 171 |
| Msa0236110 | AT4G18970.2 | 39.004 | 241 | 127 | 5 | 4 | 225 | 121 | 360 | 5.52e-51 | 171 |
| Msa0236110 | AT1G33811.1 | 35.102 | 245 | 132 | 7 | 4 | 224 | 127 | 368 | 2.42e-46 | 157 |
| Msa0236110 | AT1G71691.1 | 33.333 | 231 | 132 | 5 | 12 | 224 | 54 | 280 | 4.88e-45 | 152 |
| Msa0236110 | AT1G71691.2 | 33.333 | 231 | 132 | 5 | 12 | 224 | 155 | 381 | 9.36e-44 | 151 |
| Msa0236110 | AT2G19050.1 | 37.438 | 203 | 109 | 3 | 37 | 225 | 150 | 348 | 5.58e-39 | 138 |
| Msa0236110 | AT4G30140.1 | 34.764 | 233 | 127 | 5 | 4 | 223 | 126 | 346 | 7.92e-38 | 135 |
| Msa0236110 | AT2G19060.1 | 36.493 | 211 | 111 | 4 | 4 | 198 | 123 | 326 | 2.72e-37 | 133 |
| Msa0236110 | AT5G08460.1 | 31.967 | 244 | 141 | 6 | 4 | 225 | 144 | 384 | 2.09e-36 | 132 |
| Msa0236110 | AT2G19010.1 | 33.898 | 236 | 131 | 4 | 4 | 225 | 123 | 347 | 6.77e-36 | 130 |
| Msa0236110 | AT2G19010.2 | 33.898 | 236 | 131 | 4 | 4 | 225 | 153 | 377 | 1.48e-35 | 129 |
| Msa0236110 | AT1G71250.1 | 32.500 | 240 | 138 | 7 | 4 | 223 | 135 | 370 | 2.64e-35 | 129 |
| Msa0236110 | AT5G15720.3 | 35.652 | 230 | 120 | 5 | 22 | 225 | 105 | 332 | 4.47e-35 | 127 |
| Msa0236110 | AT5G15720.1 | 35.652 | 230 | 120 | 5 | 22 | 225 | 136 | 363 | 1.87e-34 | 126 |
| Msa0236110 | AT5G33370.1 | 29.730 | 259 | 144 | 7 | 1 | 223 | 103 | 359 | 2.51e-32 | 120 |
| Msa0236110 | AT2G19050.2 | 45.161 | 124 | 68 | 0 | 37 | 160 | 150 | 273 | 6.89e-31 | 115 |
| Msa0236110 | AT3G04290.1 | 31.863 | 204 | 115 | 4 | 37 | 220 | 156 | 355 | 3.70e-30 | 115 |
| Msa0236110 | AT1G71691.3 | 34.266 | 143 | 92 | 2 | 12 | 154 | 155 | 295 | 6.75e-27 | 105 |
| Msa0236110 | AT5G37690.2 | 29.947 | 187 | 112 | 4 | 33 | 202 | 143 | 327 | 8.37e-27 | 105 |
| Msa0236110 | AT5G37690.1 | 29.947 | 187 | 112 | 4 | 33 | 202 | 151 | 335 | 9.28e-27 | 105 |
| Msa0236110 | AT1G74460.1 | 32.828 | 198 | 113 | 5 | 23 | 202 | 138 | 333 | 2.20e-26 | 105 |
| Msa0236110 | AT4G28780.1 | 31.694 | 183 | 105 | 5 | 37 | 200 | 158 | 339 | 8.68e-26 | 103 |
| Msa0236110 | AT5G18430.1 | 30.000 | 210 | 118 | 6 | 24 | 206 | 143 | 350 | 2.66e-25 | 102 |
| Msa0236110 | AT5G15720.2 | 40.559 | 143 | 77 | 2 | 22 | 156 | 136 | 278 | 1.03e-23 | 97.1 |
| Msa0236110 | AT3G50400.1 | 33.000 | 200 | 111 | 8 | 26 | 202 | 153 | 352 | 4.49e-23 | 96.3 |
| Msa0236110 | AT3G53100.1 | 30.500 | 200 | 115 | 6 | 24 | 202 | 143 | 339 | 4.92e-21 | 90.1 |
| Msa0236110 | AT2G04570.1 | 30.256 | 195 | 114 | 5 | 28 | 202 | 146 | 338 | 1.38e-20 | 89.0 |
| Msa0236110 | AT4G10950.2 | 25.229 | 218 | 142 | 6 | 4 | 202 | 166 | 381 | 4.59e-20 | 88.2 |
| Msa0236110 | AT4G10950.1 | 25.229 | 218 | 142 | 6 | 4 | 202 | 162 | 377 | 5.45e-20 | 87.8 |
| Msa0236110 | AT5G33370.2 | 31.214 | 173 | 101 | 4 | 1 | 155 | 103 | 275 | 6.52e-20 | 87.0 |
| Msa0236110 | AT2G23540.1 | 27.778 | 198 | 121 | 6 | 27 | 202 | 168 | 365 | 1.39e-19 | 86.7 |
| Msa0236110 | AT5G22810.1 | 29.224 | 219 | 129 | 7 | 7 | 202 | 132 | 347 | 3.35e-19 | 85.1 |
| Msa0236110 | AT5G03820.1 | 27.982 | 218 | 132 | 6 | 7 | 202 | 131 | 345 | 4.02e-19 | 85.1 |
| Msa0236110 | AT5G03820.2 | 27.982 | 218 | 132 | 6 | 7 | 202 | 159 | 373 | 6.16e-19 | 84.7 |
| Msa0236110 | AT2G42990.1 | 30.890 | 191 | 108 | 6 | 29 | 198 | 147 | 334 | 9.46e-19 | 84.0 |
| Msa0236110 | AT4G26790.1 | 29.902 | 204 | 117 | 7 | 29 | 209 | 148 | 348 | 1.89e-18 | 83.2 |
| Msa0236110 | AT4G26790.2 | 29.902 | 204 | 117 | 7 | 29 | 209 | 148 | 348 | 1.89e-18 | 83.2 |
| Msa0236110 | AT2G03980.2 | 28.283 | 198 | 110 | 4 | 36 | 210 | 171 | 359 | 4.19e-18 | 82.4 |
| Msa0236110 | AT2G03980.3 | 28.283 | 198 | 110 | 4 | 36 | 210 | 171 | 359 | 4.19e-18 | 82.4 |
| Msa0236110 | AT2G03980.1 | 28.283 | 198 | 110 | 4 | 36 | 210 | 171 | 359 | 4.19e-18 | 82.4 |
| Msa0236110 | AT2G03980.4 | 28.283 | 198 | 110 | 4 | 36 | 210 | 171 | 359 | 4.19e-18 | 82.4 |
| Msa0236110 | AT2G30310.1 | 26.168 | 214 | 125 | 8 | 19 | 202 | 141 | 351 | 9.99e-18 | 81.3 |
| Msa0236110 | AT1G58430.1 | 25.352 | 213 | 131 | 7 | 10 | 197 | 133 | 342 | 1.20e-17 | 80.9 |
| Msa0236110 | AT5G63170.1 | 30.168 | 179 | 90 | 6 | 37 | 195 | 156 | 319 | 1.80e-17 | 80.1 |
| Msa0236110 | AT2G30220.1 | 25.926 | 216 | 123 | 9 | 19 | 202 | 140 | 350 | 2.73e-17 | 80.1 |
| Msa0236110 | AT3G16370.1 | 27.363 | 201 | 121 | 6 | 24 | 202 | 144 | 341 | 4.95e-17 | 79.3 |
| Msa0236110 | AT1G20130.2 | 31.217 | 189 | 105 | 6 | 26 | 194 | 310 | 493 | 2.00e-16 | 78.2 |
| Msa0236110 | AT1G20130.1 | 31.217 | 189 | 105 | 6 | 26 | 194 | 330 | 513 | 2.06e-16 | 78.2 |
| Msa0236110 | AT2G24560.1 | 23.005 | 213 | 136 | 6 | 10 | 197 | 132 | 341 | 2.90e-16 | 77.0 |
| Msa0236110 | AT1G23500.1 | 28.283 | 198 | 107 | 7 | 20 | 195 | 142 | 326 | 2.94e-16 | 77.0 |
| Msa0236110 | AT2G31550.1 | 25.616 | 203 | 123 | 7 | 19 | 196 | 1 | 200 | 3.50e-16 | 75.1 |
| Msa0236110 | AT5G03810.1 | 26.267 | 217 | 136 | 6 | 7 | 202 | 128 | 341 | 4.20e-16 | 76.6 |
| Msa0236110 | AT5G55050.1 | 29.121 | 182 | 106 | 7 | 36 | 197 | 171 | 349 | 5.01e-16 | 76.6 |
| Msa0236110 | AT2G31540.1 | 24.413 | 213 | 133 | 7 | 10 | 197 | 133 | 342 | 8.33e-16 | 75.9 |
| Msa0236110 | AT5G45950.1 | 27.136 | 199 | 120 | 6 | 14 | 195 | 147 | 337 | 1.72e-15 | 74.7 |
| Msa0236110 | AT5G41890.1 | 27.039 | 233 | 129 | 10 | 24 | 223 | 148 | 372 | 8.31e-15 | 72.8 |
| Msa0236110 | AT1G20120.1 | 26.733 | 202 | 117 | 7 | 20 | 195 | 185 | 381 | 5.45e-14 | 70.9 |
| Msa0236110 | AT1G20132.1 | 29.534 | 193 | 110 | 6 | 24 | 194 | 175 | 363 | 1.64e-13 | 69.3 |
| Msa0236110 | AT5G45960.1 | 25.000 | 196 | 119 | 6 | 29 | 199 | 166 | 358 | 1.95e-13 | 68.9 |
| Msa0236110 | AT1G20135.1 | 27.711 | 166 | 97 | 4 | 44 | 195 | 164 | 320 | 2.35e-13 | 68.6 |
| Msa0236110 | AT1G73610.1 | 26.531 | 196 | 110 | 7 | 20 | 194 | 142 | 324 | 3.83e-13 | 68.2 |
| Msa0236110 | AT1G75880.1 | 25.714 | 210 | 129 | 7 | 10 | 195 | 150 | 356 | 5.74e-13 | 67.8 |
| Msa0236110 | AT1G71120.1 | 24.581 | 179 | 111 | 6 | 37 | 195 | 155 | 329 | 1.11e-12 | 66.6 |
| Msa0236110 | AT1G75900.1 | 27.429 | 175 | 104 | 5 | 41 | 195 | 174 | 345 | 2.77e-12 | 65.5 |
| Msa0236110 | AT3G14225.2 | 29.150 | 247 | 141 | 11 | 4 | 223 | 131 | 370 | 3.86e-12 | 65.1 |
| Msa0236110 | AT3G05180.1 | 26.214 | 206 | 107 | 5 | 36 | 203 | 165 | 363 | 8.13e-12 | 64.3 |
| Msa0236110 | AT3G14225.1 | 29.339 | 242 | 137 | 11 | 9 | 223 | 140 | 374 | 1.36e-11 | 63.5 |
| Msa0236110 | AT2G24560.2 | 23.377 | 154 | 108 | 4 | 10 | 156 | 132 | 282 | 1.44e-11 | 63.2 |
| Msa0236110 | AT1G54790.1 | 24.631 | 203 | 108 | 6 | 34 | 198 | 158 | 353 | 1.56e-11 | 63.5 |
| Msa0236110 | AT1G54790.3 | 24.631 | 203 | 108 | 6 | 34 | 198 | 159 | 354 | 2.17e-11 | 63.2 |
| Msa0236110 | AT4G16233.1 | 30.303 | 132 | 67 | 5 | 118 | 228 | 5 | 132 | 5.65e-11 | 58.9 |
| Msa0236110 | AT4G16230.1 | 33.010 | 103 | 67 | 2 | 24 | 124 | 143 | 245 | 8.36e-11 | 60.5 |
| Msa0236110 | AT1G75930.1 | 27.517 | 149 | 82 | 5 | 65 | 194 | 182 | 323 | 8.61e-11 | 61.2 |
Find 44 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGTCTTGACTTAATTTA+TGG | 0.077141 | 2_2:+9061132 | None:intergenic |
| GCACTTATTTAGATAATTTA+TGG | 0.141505 | 2_2:+9063277 | None:intergenic |
| GGACAGTCTTTGTATGATTT+TGG | 0.142004 | 2_2:-9061834 | Msa0236110:intron |
| ACAAAGATAGATTTAGAATT+TGG | 0.163926 | 2_2:+9061648 | None:intergenic |
| TGCGACTTGTTGGGTAAAAT+TGG | 0.181701 | 2_2:+9063201 | None:intergenic |
| TCTAAGTTTGATAACAATTC+TGG | 0.268560 | 2_2:+9063313 | None:intergenic |
| AAAACGTAAACATTTCTATT+GGG | 0.291264 | 2_2:+9061274 | None:intergenic |
| CCAGTATTCTTCTTATATAA+AGG | 0.291292 | 2_2:-9063141 | Msa0236110:intron |
| CAGGGTGCTAATGTCGCTTT+GGG | 0.330720 | 2_2:-9063368 | Msa0236110:CDS |
| TAGATTTAGAATTTGGATAT+CGG | 0.354893 | 2_2:+9061655 | None:intergenic |
| GCAGGGTGCTAATGTCGCTT+TGG | 0.358650 | 2_2:-9063369 | Msa0236110:intron |
| GCGACTTGTTGGGTAAAATT+GGG | 0.359646 | 2_2:+9063202 | None:intergenic |
| CATGTTGGAATTGGCCTTAT+AGG | 0.367186 | 2_2:-9061795 | Msa0236110:CDS |
| AGAATTGTTATCAAACTTAG+AGG | 0.376223 | 2_2:-9063311 | Msa0236110:CDS |
| GTGTTATAGATGCGACTTGT+TGG | 0.391018 | 2_2:+9063191 | None:intergenic |
| CCTTTATATAAGAAGAATAC+TGG | 0.401167 | 2_2:+9063141 | None:intergenic |
| AAACTCGTGCATGTTGGAAT+TGG | 0.402053 | 2_2:-9061804 | Msa0236110:CDS |
| TGCTTGTATTATGTGAATAT+TGG | 0.411716 | 2_2:-9063257 | Msa0236110:CDS |
| TTGGGGCATGGAGTTGAATC+AGG | 0.418156 | 2_2:+9061292 | None:intergenic |
| TGTTGTCCAGTGAGGTCAGA+TGG | 0.445100 | 2_2:-9061325 | Msa0236110:CDS |
| TGTTATAGATGCGACTTGTT+GGG | 0.450708 | 2_2:+9063192 | None:intergenic |
| TCCATTGGATGGGTCGTCCC+TGG | 0.471406 | 2_2:+9061178 | None:intergenic |
| AATGTGGAGTGCAACCTATA+AGG | 0.471432 | 2_2:+9061781 | None:intergenic |
| TTAGATTTAATATAATGGCT+AGG | 0.472775 | 2_2:-9063923 | None:intergenic |
| TAGATTTAATATAATGGCTA+GGG | 0.478506 | 2_2:-9063922 | None:intergenic |
| TATGATAGTTCTTCTGCTCC+AGG | 0.488195 | 2_2:-9061196 | Msa0236110:CDS |
| AAACGTAAACATTTCTATTG+GGG | 0.544555 | 2_2:+9061275 | None:intergenic |
| CACATCCCATCTGACCTCAC+TGG | 0.554719 | 2_2:+9061319 | None:intergenic |
| CGACTTGTTGGGTAAAATTG+GGG | 0.556831 | 2_2:+9063203 | None:intergenic |
| GAGAAAGTTCACAGCTGATG+TGG | 0.560323 | 2_2:+9061234 | None:intergenic |
| GCAAGAAAACTCGTGCATGT+TGG | 0.562092 | 2_2:-9061810 | Msa0236110:CDS |
| ATTGCTACTCGAGGGACAGA+TGG | 0.569780 | 2_2:-9061756 | Msa0236110:CDS |
| TCTCAAACTTAGATCTCTAG+TGG | 0.570387 | 2_2:-9061691 | Msa0236110:CDS |
| TAAACATTTCTATTGGGGCA+TGG | 0.572507 | 2_2:+9061280 | None:intergenic |
| GTTGTCCAGTGAGGTCAGAT+GGG | 0.580131 | 2_2:-9061324 | Msa0236110:CDS |
| ATGATAGTTCTTCTGCTCCA+GGG | 0.599199 | 2_2:-9061195 | Msa0236110:CDS |
| CACATTCAATTGCTACTCGA+GGG | 0.607858 | 2_2:-9061764 | Msa0236110:CDS |
| CCACATTCAATTGCTACTCG+AGG | 0.609254 | 2_2:-9061765 | Msa0236110:CDS |
| AAGAACTTCAGCATATTGCT+CGG | 0.615665 | 2_2:+9063169 | None:intergenic |
| TCTGACCTCACTGGACAACA+AGG | 0.616362 | 2_2:+9061328 | None:intergenic |
| TCCAGGGACGACCCATCCAA+TGG | 0.625845 | 2_2:-9061179 | Msa0236110:CDS |
| CCTCGAGTAGCAATTGAATG+TGG | 0.637737 | 2_2:+9061765 | None:intergenic |
| AGAAAGTTCACAGCTGATGT+GGG | 0.668712 | 2_2:+9061235 | None:intergenic |
| GTGCTCCTTGTTGTCCAGTG+AGG | 0.670118 | 2_2:-9061333 | Msa0236110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATAAAATTTTATAAAT+TGG | + | chr2_2:9062753-9062772 | None:intergenic | 0.0% |
| !!! | GAATATATATAATATTTTTG+AGG | + | chr2_2:9061612-9061631 | None:intergenic | 10.0% |
| !! | AAAAAAAATTATATTTGTCA+TGG | - | chr2_2:9062782-9062801 | Msa0236110:intron | 10.0% |
| !! | AAAGTAGTAAAAAATAGAAT+GGG | + | chr2_2:9061509-9061528 | None:intergenic | 15.0% |
| !! | AAAAGTAGTAAAAAATAGAA+TGG | + | chr2_2:9061510-9061529 | None:intergenic | 15.0% |
| !!! | AAAATTGATTTTTTTTTACG+AGG | + | chr2_2:9062496-9062515 | None:intergenic | 15.0% |
| !!! | AGAATTTTATGTTTTGTAAA+GGG | - | chr2_2:9062569-9062588 | Msa0236110:intron | 15.0% |
| !!! | GGCTTTTTAAAAAAAAAAAT+TGG | - | chr2_2:9062591-9062610 | Msa0236110:intron | 15.0% |
| !!! | AATAATTGTCTGAGATTAAA+AGG | - | chr2_2:9061449-9061468 | Msa0236110:intron | 20.0% |
| !! | AAGTAGTAAAAAATAGAATG+GGG | + | chr2_2:9061508-9061527 | None:intergenic | 20.0% |
| !! | GCACTTATTTAGATAATTTA+TGG | + | chr2_2:9061779-9061798 | None:intergenic | 20.0% |
| !!! | TTTTAGAGCTTAAAATGTAT+TGG | + | chr2_2:9062364-9062383 | None:intergenic | 20.0% |
| !!! | CAGAATTTTATGTTTTGTAA+AGG | - | chr2_2:9062568-9062587 | Msa0236110:intron | 20.0% |
| !!! | GAATTTTATGTTTTGTAAAG+GGG | - | chr2_2:9062570-9062589 | Msa0236110:intron | 20.0% |
| !!! | ATTTTATAAATTGGTGTGTT+TGG | + | chr2_2:9062744-9062763 | None:intergenic | 20.0% |
| !!! | ACAAATACATGATTTTCTTA+TGG | + | chr2_2:9062836-9062855 | None:intergenic | 20.0% |
| !!! | AACTATTCTGATAATGATTT+CGG | - | chr2_2:9062946-9062965 | Msa0236110:intron | 20.0% |
| !! | TATATATTCAAAATATACCC+CGG | - | chr2_2:9062971-9062990 | Msa0236110:intron | 20.0% |
| !! | TGAAGTTTGAAAATGTAATA+GGG | - | chr2_2:9063148-9063167 | Msa0236110:CDS | 20.0% |
| !!! | TTTTTCAACAATGATTTGAA+TGG | - | chr2_2:9063185-9063204 | Msa0236110:CDS | 20.0% |
| !!! | TAGATTTAGAATTTGGATAT+CGG | + | chr2_2:9063401-9063420 | None:intergenic | 20.0% |
| !!! | ACAAAGATAGATTTAGAATT+TGG | + | chr2_2:9063408-9063427 | None:intergenic | 20.0% |
| !! | GATGTATCTAATTCAAAAAT+TGG | + | chr2_2:9063568-9063587 | None:intergenic | 20.0% |
| !!! | ACTATGATATTTTGTATTTC+AGG | - | chr2_2:9063683-9063702 | Msa0236110:intron | 20.0% |
| !! | AAAACGTAAACATTTCTATT+GGG | + | chr2_2:9063782-9063801 | None:intergenic | 20.0% |
| !! | AAAAACGTAAACATTTCTAT+TGG | + | chr2_2:9063783-9063802 | None:intergenic | 20.0% |
| !!! | AATGTTTACGTTTTTTATGA+TGG | - | chr2_2:9063788-9063807 | Msa0236110:intron | 20.0% |
| ! | GAGAAAAATTGAGATAAAAG+TGG | - | chr2_2:9061163-9061182 | Msa0236110:CDS | 25.0% |
| ! | CTATATATGCAATATTTGCA+GGG | - | chr2_2:9061667-9061686 | Msa0236110:CDS | 25.0% |
| !! | TCTAAGTTTGATAACAATTC+TGG | + | chr2_2:9061743-9061762 | None:intergenic | 25.0% |
| ! | AGAATTGTTATCAAACTTAG+AGG | - | chr2_2:9061742-9061761 | Msa0236110:CDS | 25.0% |
| ! | TGCTTGTATTATGTGAATAT+TGG | - | chr2_2:9061796-9061815 | Msa0236110:CDS | 25.0% |
| ! | CCTTTATATAAGAAGAATAC+TGG | + | chr2_2:9061915-9061934 | None:intergenic | 25.0% |
| ! | CCAGTATTCTTCTTATATAA+AGG | - | chr2_2:9061912-9061931 | Msa0236110:intron | 25.0% |
| ! | CTACATATCAACCATAAAAT+TGG | + | chr2_2:9062138-9062157 | None:intergenic | 25.0% |
| ! | TCATGGATCCTAAATATATT+AGG | - | chr2_2:9062629-9062648 | Msa0236110:intron | 25.0% |
| ! | GAGGTAAACCTAATATATTT+AGG | + | chr2_2:9062640-9062659 | None:intergenic | 25.0% |
| !! | AATTTAGTTTACTACAACAG+AGG | + | chr2_2:9062659-9062678 | None:intergenic | 25.0% |
| ! | AACTTATCGATCATATCATT+TGG | - | chr2_2:9062679-9062698 | Msa0236110:intron | 25.0% |
| ! | ATCATTTGGATAAATGTTCA+TGG | - | chr2_2:9062693-9062712 | Msa0236110:intron | 25.0% |
| !! | CATTGCATCAATAATTTTTG+TGG | + | chr2_2:9062809-9062828 | None:intergenic | 25.0% |
| ! | GTGAAGTTTGAAAATGTAAT+AGG | - | chr2_2:9063147-9063166 | Msa0236110:CDS | 25.0% |
| !!! | ATTTGAATGGCATTTTTTTG+TGG | - | chr2_2:9063198-9063217 | Msa0236110:CDS | 25.0% |
| ! | AAACGTAAACATTTCTATTG+GGG | + | chr2_2:9063781-9063800 | None:intergenic | 25.0% |
| !!! | TTGTTTTATATCCATTGGAT+GGG | + | chr2_2:9063888-9063907 | None:intergenic | 25.0% |
| ! | CACACATTTGATGACATTAA+GGG | + | chr2_2:9061206-9061225 | None:intergenic | 30.0% |
| ! | ACACACATTTGATGACATTA+AGG | + | chr2_2:9061207-9061226 | None:intergenic | 30.0% |
| ATATGCAAACATTAGTGACT+CGG | - | chr2_2:9061321-9061340 | Msa0236110:CDS | 30.0% | |
| GCTATATATGCAATATTTGC+AGG | - | chr2_2:9061666-9061685 | Msa0236110:CDS | 30.0% | |
| ! | TTCTGGCAAAGATGATTTTA+TGG | + | chr2_2:9061726-9061745 | None:intergenic | 30.0% |
| ATCAACCATAAAATTGGTAG+CGG | + | chr2_2:9062132-9062151 | None:intergenic | 30.0% | |
| CATAATATAGTACCTAACAG+AGG | - | chr2_2:9062296-9062315 | Msa0236110:intron | 30.0% | |
| !! | GATAAATGTTCATGGTTTTG+TGG | - | chr2_2:9062701-9062720 | Msa0236110:intron | 30.0% |
| GTAAAAACTTGTGTTATGGA+GGG | + | chr2_2:9062893-9062912 | None:intergenic | 30.0% | |
| TGTAAAAACTTGTGTTATGG+AGG | + | chr2_2:9062894-9062913 | None:intergenic | 30.0% | |
| CTGTGTAAAAACTTGTGTTA+TGG | + | chr2_2:9062897-9062916 | None:intergenic | 30.0% | |
| ! | CATTCAAAAAGTGCATGAAA+CGG | + | chr2_2:9063019-9063038 | None:intergenic | 30.0% |
| CATTATACAAATGTTGTGGA+CGG | + | chr2_2:9063112-9063131 | None:intergenic | 30.0% | |
| CATGCATTATACAAATGTTG+TGG | + | chr2_2:9063116-9063135 | None:intergenic | 30.0% | |
| ! | GACAGTCTTTGTATGATTTT+GGG | - | chr2_2:9063220-9063239 | Msa0236110:CDS | 30.0% |
| ! | ACAGTCTTTGTATGATTTTG+GGG | - | chr2_2:9063221-9063240 | Msa0236110:CDS | 30.0% |
| ATCTTTGTAAATAGTACTGC+TGG | - | chr2_2:9063420-9063439 | Msa0236110:intron | 30.0% | |
| TGTTGACAAAACTTTCTCTT+AGG | - | chr2_2:9063594-9063613 | Msa0236110:intron | 30.0% | |
| !! | GTTGTTTTATATCCATTGGA+TGG | + | chr2_2:9063889-9063908 | None:intergenic | 30.0% |
| !! | GCAAGTTGTTTTATATCCAT+TGG | + | chr2_2:9063893-9063912 | None:intergenic | 30.0% |
| !! | TGAGATAAAAGTGGATTGAG+AGG | - | chr2_2:9061172-9061191 | Msa0236110:CDS | 35.0% |
| !! | AAAAGTGGATTGAGAGGATT+TGG | - | chr2_2:9061178-9061197 | Msa0236110:CDS | 35.0% |
| ! | AGCTAACATTTTACCGTTGT+AGG | - | chr2_2:9061265-9061284 | Msa0236110:CDS | 35.0% |
| CACTAATGTTTGCATATGGT+GGG | + | chr2_2:9061318-9061337 | None:intergenic | 35.0% | |
| TCACTAATGTTTGCATATGG+TGG | + | chr2_2:9061319-9061338 | None:intergenic | 35.0% | |
| GAGTCACTAATGTTTGCATA+TGG | + | chr2_2:9061322-9061341 | None:intergenic | 35.0% | |
| ACACAATACCATATGTTTGG+CGG | + | chr2_2:9061404-9061423 | None:intergenic | 35.0% | |
| CACACACAATACCATATGTT+TGG | + | chr2_2:9061407-9061426 | None:intergenic | 35.0% | |
| !! | AGAATGGTTTTACGGTGTTA+GGG | + | chr2_2:9061553-9061572 | None:intergenic | 35.0% |
| !! | AAGAATGGTTTTACGGTGTT+AGG | + | chr2_2:9061554-9061573 | None:intergenic | 35.0% |
| !! | CTTGAGGAAGAATGGTTTTA+CGG | + | chr2_2:9061561-9061580 | None:intergenic | 35.0% |
| ! | TGTTATAGATGCGACTTGTT+GGG | + | chr2_2:9061864-9061883 | None:intergenic | 35.0% |
| AAGAACTTCAGCATATTGCT+CGG | + | chr2_2:9061887-9061906 | None:intergenic | 35.0% | |
| ! | AACTTCCGCTACCAATTTTA+TGG | - | chr2_2:9062124-9062143 | Msa0236110:intron | 35.0% |
| GATAAGCCTCAAGGTTTAAA+GGG | + | chr2_2:9062176-9062195 | None:intergenic | 35.0% | |
| AATATAGTACCTAACAGAGG+TGG | - | chr2_2:9062299-9062318 | Msa0236110:intron | 35.0% | |
| !!! | ATGTTCATGGTTTTGTGGTA+TGG | - | chr2_2:9062706-9062725 | Msa0236110:intron | 35.0% |
| CATGAATGCTTCTTCAATGT+CGG | + | chr2_2:9063067-9063086 | None:intergenic | 35.0% | |
| ! | GGACAGTCTTTGTATGATTT+TGG | - | chr2_2:9063219-9063238 | Msa0236110:CDS | 35.0% |
| TCTCAAACTTAGATCTCTAG+TGG | - | chr2_2:9063362-9063381 | Msa0236110:CDS | 35.0% | |
| AAACTTTCTCTTAGGATCGA+AGG | - | chr2_2:9063602-9063621 | Msa0236110:intron | 35.0% | |
| AACTTTCTCTTAGGATCGAA+GGG | - | chr2_2:9063603-9063622 | Msa0236110:intron | 35.0% | |
| TAAACATTTCTATTGGGGCA+TGG | + | chr2_2:9063776-9063795 | None:intergenic | 35.0% | |
| TCCAAGCATTTCACCTACAA+CGG | + | chr2_2:9061281-9061300 | None:intergenic | 40.0% | |
| ATAGAATGGGGTGAGAAAGA+TGG | + | chr2_2:9061496-9061515 | None:intergenic | 40.0% | |
| AAACCATTCTTCCTCAAGCA+CGG | - | chr2_2:9061563-9061582 | Msa0236110:intron | 40.0% | |
| !! | CGACTTGTTGGGTAAAATTG+GGG | + | chr2_2:9061853-9061872 | None:intergenic | 40.0% |
| !! | GCGACTTGTTGGGTAAAATT+GGG | + | chr2_2:9061854-9061873 | None:intergenic | 40.0% |
| !! | TGCGACTTGTTGGGTAAAAT+TGG | + | chr2_2:9061855-9061874 | None:intergenic | 40.0% |
| GTGTTATAGATGCGACTTGT+TGG | + | chr2_2:9061865-9061884 | None:intergenic | 40.0% | |
| ! | TTGATTCGCTCTTAATACCG+TGG | - | chr2_2:9062097-9062116 | Msa0236110:intron | 40.0% |
| TGATTCGCTCTTAATACCGT+GGG | - | chr2_2:9062098-9062117 | Msa0236110:intron | 40.0% | |
| TAACCACCCTTTAAACCTTG+AGG | - | chr2_2:9062167-9062186 | Msa0236110:intron | 40.0% | |
| GGATAAGCCTCAAGGTTTAA+AGG | + | chr2_2:9062177-9062196 | None:intergenic | 40.0% | |
| TCAGATAAGGATAAGCCTCA+AGG | + | chr2_2:9062185-9062204 | None:intergenic | 40.0% | |
| ATCCTTATCTGATGAGCCTT+CGG | - | chr2_2:9062193-9062212 | Msa0236110:intron | 40.0% | |
| TGATATTGTCCACCTCTGTT+AGG | + | chr2_2:9062311-9062330 | None:intergenic | 40.0% | |
| ACAGAGGTGGACAATATCAT+TGG | - | chr2_2:9062312-9062331 | Msa0236110:intron | 40.0% | |
| CAGAGGTGGACAATATCATT+GGG | - | chr2_2:9062313-9062332 | Msa0236110:intron | 40.0% | |
| AGAGGTGGACAATATCATTG+GGG | - | chr2_2:9062314-9062333 | Msa0236110:intron | 40.0% | |
| TGGAGTCTACTAGACAAAGT+CGG | - | chr2_2:9062337-9062356 | Msa0236110:intron | 40.0% | |
| GGATAAGTGTGACATCATCA+TGG | - | chr2_2:9062612-9062631 | Msa0236110:intron | 40.0% | |
| CAAAATATACCCCGGTTTCT+CGG | - | chr2_2:9062979-9062998 | Msa0236110:intron | 40.0% | |
| CGGTCAAACAGTCAAAAATG+TGG | + | chr2_2:9063047-9063066 | None:intergenic | 40.0% | |
| AAACTCGTGCATGTTGGAAT+TGG | - | chr2_2:9063249-9063268 | Msa0236110:CDS | 40.0% | |
| !! | CATGTTGGAATTGGCCTTAT+AGG | - | chr2_2:9063258-9063277 | Msa0236110:CDS | 40.0% |
| AATGTGGAGTGCAACCTATA+AGG | + | chr2_2:9063275-9063294 | None:intergenic | 40.0% | |
| CACATTCAATTGCTACTCGA+GGG | - | chr2_2:9063289-9063308 | Msa0236110:CDS | 40.0% | |
| CTTACCAAGTGATTCGTCTA+TGG | + | chr2_2:9063448-9063467 | None:intergenic | 40.0% | |
| AGAAAGTTCACAGCTGATGT+GGG | + | chr2_2:9063821-9063840 | None:intergenic | 40.0% | |
| TATGATAGTTCTTCTGCTCC+AGG | - | chr2_2:9063857-9063876 | Msa0236110:intron | 40.0% | |
| ATGATAGTTCTTCTGCTCCA+GGG | - | chr2_2:9063858-9063877 | Msa0236110:intron | 40.0% | |
| ACCGTTGTAGGTGAAATGCT+TGG | - | chr2_2:9061277-9061296 | Msa0236110:CDS | 45.0% | |
| CGTGGTGTAAACTATGCATC+TGG | - | chr2_2:9061355-9061374 | Msa0236110:intron | 45.0% | |
| AACTATGCATCTGGTGCATC+TGG | - | chr2_2:9061364-9061383 | Msa0236110:intron | 45.0% | |
| AACCATTCTTCCTCAAGCAC+GGG | - | chr2_2:9061564-9061583 | Msa0236110:intron | 45.0% | |
| TATAAAGTTGCCCGTGCTTG+AGG | + | chr2_2:9061577-9061596 | None:intergenic | 45.0% | |
| AAGCCTCAAGGTTTAAAGGG+TGG | + | chr2_2:9062173-9062192 | None:intergenic | 45.0% | |
| TTATGCGAGTTAGACTCCGA+AGG | + | chr2_2:9062212-9062231 | None:intergenic | 45.0% | |
| TGTGGACGGTTTCTTGTTGA+AGG | + | chr2_2:9063098-9063117 | None:intergenic | 45.0% | |
| GCAAGAAAACTCGTGCATGT+TGG | - | chr2_2:9063243-9063262 | Msa0236110:CDS | 45.0% | |
| CCTCGAGTAGCAATTGAATG+TGG | + | chr2_2:9063291-9063310 | None:intergenic | 45.0% | |
| CCACATTCAATTGCTACTCG+AGG | - | chr2_2:9063288-9063307 | Msa0236110:CDS | 45.0% | |
| GAGAAAGTTCACAGCTGATG+TGG | + | chr2_2:9063822-9063841 | None:intergenic | 45.0% | |
| !!! | AATATATATAATATTTTTGA+GGG | + | chr2_2:9061611-9061630 | None:intergenic | 5.0% |
| !!! | AATATAATTTTTTTTTTTGA+GGG | + | chr2_2:9062777-9062796 | None:intergenic | 5.0% |
| !!! | AAATATAATTTTTTTTTTTG+AGG | + | chr2_2:9062778-9062797 | None:intergenic | 5.0% |
| !! | GGTTTTACGGTGTTAGGGAG+AGG | + | chr2_2:9061548-9061567 | None:intergenic | 50.0% |
| !! | CAGGGTGCTAATGTCGCTTT+GGG | - | chr2_2:9061685-9061704 | Msa0236110:CDS | 50.0% |
| CTCCGAAGGCTCATCAGATA+AGG | + | chr2_2:9062198-9062217 | None:intergenic | 50.0% | |
| GGTGGACAATATCATTGGGG+TGG | - | chr2_2:9062317-9062336 | Msa0236110:intron | 50.0% | |
| AACCTTGCTGACCGAGAAAC+CGG | + | chr2_2:9062993-9063012 | None:intergenic | 50.0% | |
| ATTGCTACTCGAGGGACAGA+TGG | - | chr2_2:9063297-9063316 | Msa0236110:CDS | 50.0% | |
| GGCTCCATAGACGAATCACT+TGG | - | chr2_2:9063441-9063460 | Msa0236110:intron | 50.0% | |
| TCTGACCTCACTGGACAACA+AGG | + | chr2_2:9063728-9063747 | None:intergenic | 50.0% | |
| TGTTGTCCAGTGAGGTCAGA+TGG | - | chr2_2:9063728-9063747 | Msa0236110:intron | 50.0% | |
| GTTGTCCAGTGAGGTCAGAT+GGG | - | chr2_2:9063729-9063748 | Msa0236110:intron | 50.0% | |
| TTGGGGCATGGAGTTGAATC+AGG | + | chr2_2:9063764-9063783 | None:intergenic | 50.0% | |
| GACTCGGACGACATACTTCG+TGG | - | chr2_2:9061337-9061356 | Msa0236110:CDS | 55.0% | |
| ! | TGGTGCATCTGGAATCCGCT+CGG | - | chr2_2:9061375-9061394 | Msa0236110:intron | 55.0% |
| TATGTTTGGCGGTCTCCGAG+CGG | + | chr2_2:9061393-9061412 | None:intergenic | 55.0% | |
| CTCGGAGACCGCCAAACATA+TGG | - | chr2_2:9061393-9061412 | Msa0236110:intron | 55.0% | |
| TGCCCGTGCTTGAGGAAGAA+TGG | + | chr2_2:9061569-9061588 | None:intergenic | 55.0% | |
| ! | GCAGGGTGCTAATGTCGCTT+TGG | - | chr2_2:9061684-9061703 | Msa0236110:CDS | 55.0% |
| !! | GGTAGCGGAAGTTGAACCCA+CGG | + | chr2_2:9062117-9062136 | None:intergenic | 55.0% |
| ACCTTGCTGACCGAGAAACC+GGG | + | chr2_2:9062992-9063011 | None:intergenic | 55.0% | |
| GGTTTCTCGGTCAGCAAGGT+TGG | - | chr2_2:9062992-9063011 | Msa0236110:intron | 55.0% | |
| ! | GTGCTCCTTGTTGTCCAGTG+AGG | - | chr2_2:9063720-9063739 | Msa0236110:intron | 55.0% |
| CACATCCCATCTGACCTCAC+TGG | + | chr2_2:9063737-9063756 | None:intergenic | 55.0% | |
| CCTTGCTGACCGAGAAACCG+GGG | + | chr2_2:9062991-9063010 | None:intergenic | 60.0% | |
| TCCAGGGACGACCCATCCAA+TGG | - | chr2_2:9063874-9063893 | Msa0236110:intron | 60.0% | |
| TCCATTGGATGGGTCGTCCC+TGG | + | chr2_2:9063878-9063897 | None:intergenic | 60.0% | |
| CCCCGGTTTCTCGGTCAGCA+AGG | - | chr2_2:9062988-9063007 | Msa0236110:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 9061144 | 9063931 | 9061144 | ID=Msa0236110;Name=Msa0236110 |
| chr2_2 | mRNA | 9061144 | 9063931 | 9061144 | ID=Msa0236110-mRNA-1;Parent=Msa0236110;Name=Msa0236110-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.75|0.33|0.5|4|0|229 |
| chr2_2 | exon | 9063923 | 9063931 | 9063923 | ID=Msa0236110-mRNA-1:exon:3922;Parent=Msa0236110-mRNA-1 |
| chr2_2 | exon | 9063142 | 9063387 | 9063142 | ID=Msa0236110-mRNA-1:exon:3921;Parent=Msa0236110-mRNA-1 |
| chr2_2 | exon | 9061643 | 9061850 | 9061643 | ID=Msa0236110-mRNA-1:exon:3920;Parent=Msa0236110-mRNA-1 |
| chr2_2 | exon | 9061144 | 9061370 | 9061144 | ID=Msa0236110-mRNA-1:exon:3919;Parent=Msa0236110-mRNA-1 |
| chr2_2 | CDS | 9063923 | 9063931 | 9063923 | ID=Msa0236110-mRNA-1:cds;Parent=Msa0236110-mRNA-1 |
| chr2_2 | CDS | 9063142 | 9063387 | 9063142 | ID=Msa0236110-mRNA-1:cds;Parent=Msa0236110-mRNA-1 |
| chr2_2 | CDS | 9061643 | 9061850 | 9061643 | ID=Msa0236110-mRNA-1:cds;Parent=Msa0236110-mRNA-1 |
| chr2_2 | CDS | 9061144 | 9061370 | 9061144 | ID=Msa0236110-mRNA-1:cds;Parent=Msa0236110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
