AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0062480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0062480 MtrunA17_Chr1g0163001 93.455 550 9 4 1 548 1 525 0.0 1035
Msa0062480 MtrunA17_Chr1g0199101 55.116 606 140 23 1 548 1 532 3.18e-178 513
Msa0062480 MtrunA17_Chr1g0162971 48.276 551 134 19 1 525 1 426 2.02e-132 393
Msa0062480 MtrunA17_Chr1g0210821 41.774 620 211 19 1 545 1 545 4.02e-122 370
Msa0062480 MtrunA17_Chr7g0263941 74.627 201 25 2 34 232 23 199 4.25e-105 321
Msa0062480 MtrunA17_Chr8g0342421 74.611 193 25 1 41 233 60 228 5.82e-103 319
Msa0062480 MtrunA17_Chr2g0330171 69.159 214 39 2 16 229 22 208 1.91e-102 317
Msa0062480 MtrunA17_Chr1g0181381 76.166 193 20 3 38 229 34 201 2.32e-102 317
Msa0062480 MtrunA17_Chr8g0373541 73.545 189 26 1 41 229 31 195 1.08e-100 313
Msa0062480 MtrunA17_Chr4g0040571 74.866 187 23 1 43 229 39 201 5.04e-100 311
Msa0062480 MtrunA17_Chr4g0029521 46.024 415 130 14 40 444 35 365 2.47e-99 309
Msa0062480 MtrunA17_Chr7g0268961 81.132 159 30 0 71 229 26 184 2.62e-99 309
Msa0062480 MtrunA17_Chr1g0185121 62.000 250 57 5 2 242 4 224 7.24e-97 301
Msa0062480 MtrunA17_Chr1g0191991 71.429 189 30 1 41 229 61 225 1.72e-96 303
Msa0062480 MtrunA17_Chr1g0151351 62.882 229 54 5 15 237 8 211 6.70e-93 291
Msa0062480 MtrunA17_Chr2g0326381 80.392 153 29 1 78 229 43 195 5.28e-91 285
Msa0062480 MtrunA17_Chr3g0141431 64.674 184 40 2 41 223 20 179 2.88e-85 270
Msa0062480 MtrunA17_Chr2g0324991 84.211 133 21 0 76 208 1 133 6.63e-84 257
Msa0062480 MtrunA17_Chr6g0479921 62.759 145 53 1 78 221 40 184 2.14e-65 220
Msa0062480 MtrunA17_Chr8g0375521 62.759 145 52 2 78 220 38 182 3.66e-64 215
Msa0062480 MtrunA17_Chr1g0200421 34.437 151 87 4 81 219 236 386 3.84e-23 102
Msa0062480 MtrunA17_Chr2g0320341 34.868 152 85 4 79 216 227 378 5.58e-22 98.2
Msa0062480 MtrunA17_Chr3g0123941 34.899 149 89 3 79 219 120 268 1.09e-21 96.3
Msa0062480 MtrunA17_Chr8g0352011 36.301 146 83 5 83 219 166 310 1.03e-19 90.5
Msa0062480 MtrunA17_Chr5g0422571 35.811 148 82 5 88 224 106 251 1.90e-19 89.0
Msa0062480 MtrunA17_Chr4g0053341 33.333 174 106 4 55 219 46 218 2.95e-19 87.0
Msa0062480 MtrunA17_Chr7g0258011 33.333 162 90 6 83 227 176 336 3.02e-19 89.4
Msa0062480 MtrunA17_Chr1g0198651 33.544 158 89 6 75 219 95 249 3.19e-19 88.2
Msa0062480 MtrunA17_Chr1g0173841 34.932 146 85 5 83 219 215 359 1.11e-18 88.2
Msa0062480 MtrunA17_Chr8g0382121 32.432 148 89 5 80 216 109 256 2.95e-18 85.9
Msa0062480 MtrunA17_Chr2g0328921 33.562 146 87 5 83 219 138 282 5.49e-18 85.1
Msa0062480 MtrunA17_Chr2g0321291 34.694 147 84 5 83 219 133 277 1.58e-17 83.6
Msa0062480 MtrunA17_Chr4g0026521 33.333 147 86 5 83 219 118 262 1.03e-16 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0062480 AT2G02080.1 46.307 501 169 12 41 511 52 482 2.59e-125 377
Msa0062480 AT2G02080.4 46.307 501 169 12 41 511 52 482 2.59e-125 377
Msa0062480 AT2G02080.5 46.307 501 169 12 41 511 52 482 2.59e-125 377
Msa0062480 AT2G02080.3 46.307 501 169 12 41 511 52 482 2.59e-125 377
Msa0062480 AT2G02070.2 44.776 536 193 13 42 516 51 544 7.02e-115 353
Msa0062480 AT2G02070.1 44.776 536 193 13 42 516 51 544 7.02e-115 353
Msa0062480 AT2G02080.6 46.563 451 165 11 91 511 1 405 4.64e-113 343
Msa0062480 AT2G02080.2 46.563 451 165 11 91 511 1 405 4.64e-113 343
Msa0062480 AT1G14580.1 44.141 512 186 12 2 508 20 436 3.16e-112 342
Msa0062480 AT1G14580.2 44.141 512 186 12 2 508 20 436 3.16e-112 342
Msa0062480 AT1G14580.3 44.141 512 186 12 2 508 34 450 4.70e-112 342
Msa0062480 AT3G50700.1 70.142 211 36 2 22 229 10 196 1.30e-102 317
Msa0062480 AT5G66730.1 71.429 203 31 2 31 230 17 195 1.94e-100 313
Msa0062480 AT1G55110.3 68.837 215 30 4 19 229 45 226 3.67e-98 305
Msa0062480 AT1G55110.1 68.837 215 30 4 19 229 45 226 3.67e-98 305
Msa0062480 AT1G55110.2 68.837 215 30 4 19 229 45 226 3.67e-98 305
Msa0062480 AT1G03840.1 72.396 192 27 2 38 229 38 203 5.05e-98 306
Msa0062480 AT1G03840.2 83.333 156 26 0 74 229 46 201 1.44e-97 305
Msa0062480 AT5G03150.1 69.668 211 33 4 43 250 53 235 1.99e-97 305
Msa0062480 AT3G45260.2 84.615 156 23 1 78 232 50 205 9.49e-96 299
Msa0062480 AT3G45260.1 84.615 156 23 1 78 232 50 205 9.49e-96 299
Msa0062480 AT5G44160.1 71.875 192 28 2 38 229 34 199 7.10e-95 297
Msa0062480 AT5G44160.2 80.120 166 31 1 76 239 7 172 1.43e-94 295
Msa0062480 AT4G02670.1 84.967 153 22 1 78 229 64 216 2.82e-94 293
Msa0062480 AT4G02670.2 84.967 153 22 1 78 229 66 218 3.23e-94 293
Msa0062480 AT1G25250.1 63.014 146 51 2 78 220 21 166 1.23e-65 218
Msa0062480 AT2G01940.1 63.946 147 51 2 78 222 55 201 1.30e-65 220
Msa0062480 AT1G25250.3 63.014 146 51 2 78 220 44 189 1.33e-65 218
Msa0062480 AT1G68130.1 56.395 172 65 3 78 239 52 223 2.35e-65 219
Msa0062480 AT2G01940.3 62.838 148 52 3 78 222 55 202 4.83e-62 211
Msa0062480 AT1G68130.2 54.745 137 52 3 113 239 1 137 3.64e-45 162
Msa0062480 AT2G01940.2 64.286 112 38 2 113 222 1 112 7.08e-45 162
Msa0062480 AT1G25250.2 62.162 111 39 2 113 220 1 111 1.99e-44 159
Msa0062480 AT1G34370.3 33.333 153 88 3 81 219 19 171 6.54e-22 96.7
Msa0062480 AT1G34370.2 33.333 153 88 3 81 219 229 381 1.30e-21 98.6
Msa0062480 AT1G34370.1 33.333 153 88 3 81 219 229 381 1.30e-21 98.6
Msa0062480 AT5G22890.1 31.373 153 91 3 81 219 202 354 6.33e-21 95.1
Msa0062480 AT3G20880.1 31.737 167 98 6 83 234 243 408 6.26e-19 89.7
Msa0062480 AT1G51220.1 32.192 146 89 4 83 219 165 309 2.43e-18 87.0
Msa0062480 AT3G57670.1 34.247 146 86 5 83 219 204 348 4.11e-18 87.0
Msa0062480 AT1G13290.1 34.899 149 83 6 88 224 93 239 6.98e-18 85.1
Msa0062480 AT1G34790.1 35.333 150 85 6 80 219 129 276 1.45e-17 84.0
Msa0062480 AT1G08290.1 29.954 217 120 9 16 219 115 312 5.29e-17 82.8

Find 97 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTTGTTGGGTGCTTATT+TGG 0.111823 1_2:+21973986 None:intergenic
CGAAGAAGTTGTGTTGTTAT+TGG 0.199081 1_2:+21973708 None:intergenic
TTTGTTGCCATTAGGGTCTT+TGG 0.213274 1_2:+21977227 None:intergenic
TCCATTGTTGATCTTCAAAA+AGG 0.237827 1_2:+21973103 None:intergenic
TTCATCATCTACACCTTTCT+TGG 0.248087 1_2:-21977850 Msa0062480:CDS
GGAAAGAAGCTTAGGTTAAA+AGG 0.253387 1_2:+21973676 None:intergenic
ATTAGATGATGTTCATATTT+TGG 0.253906 1_2:+21973919 None:intergenic
CACAAATAAACCTTTCTCTT+TGG 0.255380 1_2:+21977092 None:intergenic
AAATCTGTTTGTTGCCATTA+GGG 0.267384 1_2:+21977220 None:intergenic
GTGTTGTTACCATTGGTATT+AGG 0.279367 1_2:+21973655 None:intergenic
CAAATCTGTTTGTTGCCATT+AGG 0.293552 1_2:+21977219 None:intergenic
TCCTTGTTGGGTGCTTATTT+GGG 0.302496 1_2:+21973987 None:intergenic
AGGTACTTGCATGGTGTTCC+AGG 0.328858 1_2:+21977717 None:intergenic
GCTTAATATGTTGTTGTTTG+TGG 0.341536 1_2:+21973963 None:intergenic
CCTTGTGTTGATTCCAACTT+AGG 0.349880 1_2:+21973133 None:intergenic
CTAGTTGGTAATTTGTGCTT+TGG 0.354162 1_2:-21973289 Msa0062480:CDS
CATGAGTGCAATGAACAATA+TGG 0.355016 1_2:-21973158 Msa0062480:CDS
GTATGTGAAGTGTGTCAAAA+AGG 0.363879 1_2:-21977197 Msa0062480:CDS
TCTTGTTGGAAAGTTTGATT+TGG 0.366501 1_2:+21973811 None:intergenic
TCCACAAACCACATGAGTTT+AGG 0.377863 1_2:-21974015 Msa0062480:CDS
GTTGGTAATTTGTGCTTTGG+AGG 0.397322 1_2:-21973286 Msa0062480:CDS
TGTTGTTTGTGGCTCCTTGT+TGG 0.400951 1_2:+21973974 None:intergenic
AGTGCTATCACCTCTGCATC+TGG 0.401274 1_2:+21977254 None:intergenic
TGGTGAACACATGTTGGTTC+TGG 0.406411 1_2:+21977068 None:intergenic
ATGCAACTTCCTGATCTTCA+AGG 0.407756 1_2:-21973736 Msa0062480:CDS
ATTCTAAGACTTGTGGTACT+AGG 0.408246 1_2:-21976917 Msa0062480:CDS
GTTGTTTGTGGCTCCTTGTT+GGG 0.418545 1_2:+21973975 None:intergenic
TTGGTATTTCCTTGAAGATC+AGG 0.421140 1_2:+21973727 None:intergenic
AAAAGTGGTTTGAAATTGAA+TGG 0.422881 1_2:-21977529 Msa0062480:CDS
GTGACAGTTTCATCACTCAT+AGG 0.424200 1_2:-21974113 Msa0062480:CDS
AGGATCAGATAAATTGACTT+TGG 0.426316 1_2:-21973266 Msa0062480:CDS
AATATGCTGTTCAATCTGAT+TGG 0.427517 1_2:-21976947 Msa0062480:CDS
GTCCTTGATGAAGGTCTTGT+TGG 0.436312 1_2:+21973797 None:intergenic
CATATTGTTCATTGCACTCA+TGG 0.441221 1_2:+21973159 None:intergenic
ACCTAAACTCATGTGGTTTG+TGG 0.441992 1_2:+21974014 None:intergenic
TGGTATTAGGAAAGAAGCTT+AGG 0.442631 1_2:+21973668 None:intergenic
GTGTTCACCATGACCCTTCA+AGG 0.444680 1_2:-21977055 Msa0062480:CDS
ATATATGATAACAATAATCT+TGG 0.452803 1_2:-21973370 Msa0062480:CDS
CATGACCCTTCAAGGGCTCT+TGG 0.457066 1_2:-21977047 Msa0062480:CDS
CCCTTCCAACATGAACCCTT+TGG 0.462526 1_2:-21974052 Msa0062480:CDS
TCTTGTCTGATTTCCAAGAA+AGG 0.471370 1_2:+21977837 None:intergenic
ATGAGTAGTGCAAGTGGTGG+AGG 0.471524 1_2:-21973211 Msa0062480:CDS
GAACAATATGGATCCTAAGT+TGG 0.471527 1_2:-21973146 Msa0062480:CDS
AGGGCTCTTGGTGACCTCAC+TGG 0.481216 1_2:-21977035 Msa0062480:CDS
TTGATGAACTCTCTTGGTAA+TGG 0.492874 1_2:-21973403 Msa0062480:CDS
GCCAAAGGGTTCATGTTGGA+AGG 0.499818 1_2:+21974051 None:intergenic
ACTATCTCCAAAGACCCTAA+TGG 0.500143 1_2:-21977234 Msa0062480:CDS
GAAGAGGACACAATTTGCCT+TGG 0.500777 1_2:-21977142 Msa0062480:CDS
ATGCATTGTGTTGTTACCAT+TGG 0.504019 1_2:+21973648 None:intergenic
TTGAGAATTGTCCTTGATGA+AGG 0.510385 1_2:+21973788 None:intergenic
CATGGATTGATGAACTCTCT+TGG 0.512107 1_2:-21973409 Msa0062480:CDS
TAACAAAGAGCCAAAGAGAA+AGG 0.517289 1_2:-21977102 Msa0062480:CDS
TCATCACAACAAAGTCTAGT+TGG 0.517423 1_2:-21973304 Msa0062480:CDS
GATGATGATGATTGATGTAA+AGG 0.518086 1_2:+21973892 None:intergenic
TTCTAAGACTTGTGGTACTA+GGG 0.522062 1_2:-21976916 Msa0062480:CDS
AAAGTGGTTTGAAATTGAAT+GGG 0.536574 1_2:-21977528 Msa0062480:CDS
AAACAACTTCATCTTCATCA+TGG 0.542991 1_2:-21973763 Msa0062480:CDS
GATCAACACCAACATCTACA+TGG 0.561607 1_2:-21973427 Msa0062480:CDS
TGGTCAGTTTCACAATGTTG+AGG 0.562544 1_2:-21973350 Msa0062480:CDS
AGCTTCTTTCCTAATACCAA+TGG 0.563642 1_2:-21973664 Msa0062480:CDS
TAACAACACAACTTCTTCGT+CGG 0.566297 1_2:-21973704 Msa0062480:CDS
TTCCAACAAGACCTTCATCA+AGG 0.568775 1_2:-21973799 Msa0062480:CDS
GTGTACAAGGAATGTTACCT+AGG 0.570781 1_2:+21973941 None:intergenic
CATCATCCTCATCAACATGA+AGG 0.570900 1_2:-21973598 Msa0062480:CDS
TATATATAGATATACATAGA+GGG 0.571167 1_2:+21977495 None:intergenic
CAAGAGCCCTTGAAGGGTCA+TGG 0.571189 1_2:+21977048 None:intergenic
TTTGGATCAGTGATGAAGAA+AGG 0.573682 1_2:+21973829 None:intergenic
CCAAAGGGTTCATGTTGGAA+GGG 0.582486 1_2:+21974052 None:intergenic
TGACAGTTTCATCACTCATA+GGG 0.582640 1_2:-21974112 Msa0062480:CDS
AAAATAGATGAGTTGCCAAA+GGG 0.582651 1_2:+21974037 None:intergenic
AGGTCACCAAGAGCCCTTGA+AGG 0.583044 1_2:+21977041 None:intergenic
TCATCAATCCATGTAGATGT+TGG 0.584732 1_2:+21973419 None:intergenic
GAAAATAGATGAGTTGCCAA+AGG 0.595195 1_2:+21974036 None:intergenic
TCAGTTTCACAATGTTGAGG+AGG 0.598972 1_2:-21973347 Msa0062480:CDS
AGACTTTGTTGTGATGATGA+TGG 0.601984 1_2:+21973310 None:intergenic
GGGATAGACCTAAACTCATG+TGG 0.602066 1_2:+21974007 None:intergenic
AACAACAACATATTAAGCCT+AGG 0.605686 1_2:-21973958 Msa0062480:CDS
AATGCATAAAGGTACTTGCA+TGG 0.607082 1_2:+21977708 None:intergenic
AAAGCTCATTCTAAGACTTG+TGG 0.613886 1_2:-21976924 Msa0062480:CDS
AGTTGCCAAAGGGTTCATGT+TGG 0.620508 1_2:+21974047 None:intergenic
TGTTCACCATGACCCTTCAA+GGG 0.621698 1_2:-21977054 Msa0062480:CDS
GAAAACAGATCCAGATGCAG+AGG 0.622348 1_2:-21977264 Msa0062480:intron
TCCCAAATAAGCACCCAACA+AGG 0.624001 1_2:-21973988 Msa0062480:CDS
ATCAGTGATGAAGAAAGGTG+AGG 0.628094 1_2:+21973834 None:intergenic
AATATGAGTAGTGCAAGTGG+TGG 0.630540 1_2:-21973214 Msa0062480:CDS
AATTTGCAACTACATAGAAG+AGG 0.631288 1_2:-21977158 Msa0062480:CDS
CCTAAGTTGGAATCAACACA+AGG 0.634362 1_2:-21973133 Msa0062480:CDS
ACGACTATCAACAACAACAA+TGG 0.634863 1_2:-21973463 Msa0062480:CDS
AGCAGTTGATGAAGCATCTG+TGG 0.636040 1_2:+21977779 None:intergenic
ACTGTGGTACTCTCTTCTCA+AGG 0.636169 1_2:-21976881 Msa0062480:intron
GGTCACCAAGAGCCCTTGAA+GGG 0.641915 1_2:+21977042 None:intergenic
AGAAATATGAGTAGTGCAAG+TGG 0.666756 1_2:-21973217 Msa0062480:CDS
AATGCAGTTGCCGACATGTG+TGG 0.670626 1_2:+21973520 None:intergenic
GTTGTCTTCGCCACACATGT+CGG 0.684664 1_2:-21973530 Msa0062480:CDS
GGGTCATGGTGAACACATGT+TGG 0.698022 1_2:+21977062 None:intergenic
AGTGCTTCTTAATTCCAGTG+AGG 0.713073 1_2:+21977021 None:intergenic
AGGGAGTATAGATGTGACTG+TGG 0.716730 1_2:-21976897 Msa0062480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTCAAGATTAATTTA+GGG + chr1_2:21973399-21973418 None:intergenic 10.0%
!! AAATAATTCAAGATTAATTT+AGG + chr1_2:21973400-21973419 None:intergenic 10.0%
!!! AATATATTTTTAAAAGCAAA+AGG + chr1_2:21973687-21973706 None:intergenic 10.0%
!! ATATTTGCATATAAAAAAAT+TGG + chr1_2:21974138-21974157 None:intergenic 10.0%
!! AAATATATATTAAATAGAGT+AGG - chr1_2:21974152-21974171 Msa0062480:intron 10.0%
!!! TTTATTAATGCATTTTAATT+TGG - chr1_2:21974503-21974522 Msa0062480:intron 10.0%
!! TATTTCATAAAAACAATTAT+GGG + chr1_2:21975761-21975780 None:intergenic 10.0%
!! ATATTTCATAAAAACAATTA+TGG + chr1_2:21975762-21975781 None:intergenic 10.0%
!!! TATACATTAAAATATTCTTT+TGG - chr1_2:21975922-21975941 Msa0062480:intron 10.0%
!! ATTTATCCAAAATATAATTT+GGG + chr1_2:21976142-21976161 None:intergenic 10.0%
!! AATTTATCCAAAATATAATT+TGG + chr1_2:21976143-21976162 None:intergenic 10.0%
!! TTAATTAAATACTAATCAAA+AGG - chr1_2:21976386-21976405 Msa0062480:intron 10.0%
!! TTAAAATGTATATATTGAAA+TGG - chr1_2:21976489-21976508 Msa0062480:intron 10.0%
!!! ATCTTGAATTATTTTAGTAT+AGG - chr1_2:21973406-21973425 Msa0062480:CDS 15.0%
!!! TCTTGAATTATTTTAGTATA+GGG - chr1_2:21973407-21973426 Msa0062480:CDS 15.0%
!! TATATATAGATATACATAGA+GGG + chr1_2:21973486-21973505 None:intergenic 15.0%
!!! TTTTTTTTGTTTGTTTTGAA+TGG + chr1_2:21973629-21973648 None:intergenic 15.0%
!!! GTGTAACTTTTTTATTTTTT+TGG - chr1_2:21973661-21973680 Msa0062480:CDS 15.0%
!!! GATTAAAATTTGCTTAAAAT+AGG - chr1_2:21974281-21974300 Msa0062480:intron 15.0%
!! AAAATGAAAAATAACTAACA+AGG - chr1_2:21974725-21974744 Msa0062480:intron 15.0%
!!! TATTTTTCTATCTCTTATAA+TGG - chr1_2:21975302-21975321 Msa0062480:intron 15.0%
!! ATATTAAATGTCAATTATGT+AGG + chr1_2:21975824-21975843 None:intergenic 15.0%
!! TTTAATATAATAACCATACA+CGG - chr1_2:21975836-21975855 Msa0062480:intron 15.0%
!!! TAATTCTAAGGTAATTAAAT+TGG + chr1_2:21976329-21976348 None:intergenic 15.0%
!!! TTAGAGTTTTATTTTTTTAC+GGG + chr1_2:21976636-21976655 None:intergenic 15.0%
!!! GTTAGAGTTTTATTTTTTTA+CGG + chr1_2:21976637-21976656 None:intergenic 15.0%
!! GTAAAATAAAATATTGCATT+AGG + chr1_2:21976758-21976777 None:intergenic 15.0%
!! ATATATGATAACAATAATCT+TGG - chr1_2:21977608-21977627 Msa0062480:intron 15.0%
!! AAATAATGAAGAATGCATAA+AGG + chr1_2:21973284-21973303 None:intergenic 20.0%
!! GTATATATAGATATACATAG+AGG + chr1_2:21973487-21973506 None:intergenic 20.0%
!!! TAAAATTTGCTTAAAATAGG+AGG - chr1_2:21974284-21974303 Msa0062480:intron 20.0%
!!! TTAAGTTTCTTTCAAGTTTA+TGG + chr1_2:21974375-21974394 None:intergenic 20.0%
!! TAAAAAAATAGATCAACCAT+AGG + chr1_2:21974421-21974440 None:intergenic 20.0%
!!! ACAAGTGTAATTTAAAACAT+TGG + chr1_2:21974531-21974550 None:intergenic 20.0%
!! TTACTCATATTTACTATTCT+TGG + chr1_2:21974694-21974713 None:intergenic 20.0%
!! TCGTAAACAAAAGTTAAAAT+AGG - chr1_2:21974764-21974783 Msa0062480:intron 20.0%
!! CGTAAACAAAAGTTAAAATA+GGG - chr1_2:21974765-21974784 Msa0062480:intron 20.0%
!!! AAAATAAGTTGAGATTGTTT+TGG + chr1_2:21974944-21974963 None:intergenic 20.0%
!!! TTATTTTTTTTGTTGTGCTT+TGG - chr1_2:21974957-21974976 Msa0062480:intron 20.0%
!!! TATTTTTTTTGTTGTGCTTT+GGG - chr1_2:21974958-21974977 Msa0062480:intron 20.0%
!! GAAAAAATTCATCATAATGA+AGG + chr1_2:21975139-21975158 None:intergenic 20.0%
!!! TTTTTCTCTCTCAAATTTTA+CGG - chr1_2:21975264-21975283 Msa0062480:intron 20.0%
!! TTCACAAGAATTATATATCA+TGG - chr1_2:21975462-21975481 Msa0062480:intron 20.0%
!! AATAATCAAAACCACAAAAT+GGG + chr1_2:21975536-21975555 None:intergenic 20.0%
!! CATTAAACAATGAAAAAAGA+GGG + chr1_2:21975677-21975696 None:intergenic 20.0%
!! TTAATATAATAACCATACAC+GGG - chr1_2:21975837-21975856 Msa0062480:intron 20.0%
!! AAAAGTGAGATAAACAATTA+AGG + chr1_2:21975902-21975921 None:intergenic 20.0%
!! AAGGTAATTAAATTGGATAA+TGG + chr1_2:21976322-21976341 None:intergenic 20.0%
!! TCTCTCATTTCTAATAAATT+TGG + chr1_2:21976561-21976580 None:intergenic 20.0%
!!! ATTAGATGATGTTCATATTT+TGG + chr1_2:21977062-21977081 None:intergenic 20.0%
!!! TGATTTCTTCTTTTTTTCTG+AGG + chr1_2:21973240-21973259 None:intergenic 25.0%
! AAAAAAAGAAGAAATCAACC+TGG - chr1_2:21973243-21973262 Msa0062480:CDS 25.0%
! TCCAGAAATATTTCACAAAA+GGG + chr1_2:21973344-21973363 None:intergenic 25.0%
! ATCCAGAAATATTTCACAAA+AGG + chr1_2:21973345-21973364 None:intergenic 25.0%
!! CACTTTTCATTAGAAAAACT+TGG + chr1_2:21973436-21973455 None:intergenic 25.0%
!! CAAGTTTTTCTAATGAAAAG+TGG - chr1_2:21973434-21973453 Msa0062480:CDS 25.0%
!! AAAAGTGGTTTGAAATTGAA+TGG - chr1_2:21973449-21973468 Msa0062480:CDS 25.0%
!! AAAGTGGTTTGAAATTGAAT+GGG - chr1_2:21973450-21973469 Msa0062480:CDS 25.0%
! TACAAAACCAGTTTCAATTA+TGG + chr1_2:21974312-21974331 None:intergenic 25.0%
! ATGTTAATACACATTACCTA+TGG - chr1_2:21974402-21974421 Msa0062480:intron 25.0%
! TTGTTGAAGATATAACGAAA+TGG + chr1_2:21974465-21974484 None:intergenic 25.0%
! AACAAAACAAAAAGCTTCAA+TGG + chr1_2:21974796-21974815 None:intergenic 25.0%
! GGATGCAATTATATGTATTA+TGG + chr1_2:21975187-21975206 None:intergenic 25.0%
! CATCATACAATAGATTATAG+AGG + chr1_2:21975208-21975227 None:intergenic 25.0%
! AATTATCTCGCATAACTTAA+TGG + chr1_2:21975245-21975264 None:intergenic 25.0%
!! ATGTTTTCTCAAAGATTTTC+CGG - chr1_2:21975407-21975426 Msa0062480:intron 25.0%
! ATACGATCGTACTATTAAAA+AGG + chr1_2:21975443-21975462 None:intergenic 25.0%
! TTATATATCATGGTAAGAAG+TGG - chr1_2:21975472-21975491 Msa0062480:intron 25.0%
! ATAATCAAAACCACAAAATG+GGG + chr1_2:21975535-21975554 None:intergenic 25.0%
! CAATAATCAAAACCACAAAA+TGG + chr1_2:21975537-21975556 None:intergenic 25.0%
!!! CATTTTGTGGTTTTGATTAT+TGG - chr1_2:21975535-21975554 Msa0062480:intron 25.0%
! GCATTAAACAATGAAAAAAG+AGG + chr1_2:21975678-21975697 None:intergenic 25.0%
!! AAAAAGTATGTAGGATTGTA+GGG + chr1_2:21975789-21975808 None:intergenic 25.0%
!! AAAAAAGTATGTAGGATTGT+AGG + chr1_2:21975790-21975809 None:intergenic 25.0%
!!! AATCCTACATACTTTTTTTG+AGG - chr1_2:21975792-21975811 Msa0062480:intron 25.0%
! TATCCAAAATATAATTTGGG+TGG + chr1_2:21976139-21976158 None:intergenic 25.0%
! AGAAAGATAGAGTTTAAGTA+AGG + chr1_2:21976211-21976230 None:intergenic 25.0%
! AATACTAATCAAAAGGTTCA+AGG - chr1_2:21976393-21976412 Msa0062480:intron 25.0%
! ATGTGTATTTGCATTATGAA+TGG + chr1_2:21976693-21976712 None:intergenic 25.0%
! ATTCATAATGCAAATACACA+TGG - chr1_2:21976692-21976711 Msa0062480:intron 25.0%
!! AATTCGAATGTATTTGTTAG+AGG + chr1_2:21976730-21976749 None:intergenic 25.0%
!!! TGGAAATAACAAGTTTGTTA+TGG + chr1_2:21976825-21976844 None:intergenic 25.0%
!!! AAATTGACTTTGGATTTTCT+TGG - chr1_2:21977722-21977741 Msa0062480:intron 25.0%
!!! CTTTTTTTCTGAGGAACTAA+AGG + chr1_2:21973231-21973250 None:intergenic 30.0%
! ACCCTTTTGTGAAATATTTC+TGG - chr1_2:21973340-21973359 Msa0062480:CDS 30.0%
!!! TTTGTTTGTTTTGAATGGCA+TGG + chr1_2:21973624-21973643 None:intergenic 30.0%
! AAATCTGTTTGTTGCCATTA+GGG + chr1_2:21973761-21973780 None:intergenic 30.0%
TATGTGAAGTGTGTCAAAAA+GGG - chr1_2:21973782-21973801 Msa0062480:CDS 30.0%
AATTTGCAACTACATAGAAG+AGG - chr1_2:21973820-21973839 Msa0062480:CDS 30.0%
CACAAATAAACCTTTCTCTT+TGG + chr1_2:21973889-21973908 None:intergenic 30.0%
AATATGCTGTTCAATCTGAT+TGG - chr1_2:21974031-21974050 Msa0062480:CDS 30.0%
!! ACAAAAGAGTATCAACTAGA+GGG + chr1_2:21974343-21974362 None:intergenic 30.0%
!! TACAAAAGAGTATCAACTAG+AGG + chr1_2:21974344-21974363 None:intergenic 30.0%
TTGGAATCCATAAGAAACTA+GGG + chr1_2:21974675-21974694 None:intergenic 30.0%
AACAAGGTTGTTGAAGAAAA+TGG - chr1_2:21974741-21974760 Msa0062480:intron 30.0%
!! TTGTTTTGTTAGTTTATGCG+TGG - chr1_2:21974806-21974825 Msa0062480:intron 30.0%
!! TGTTTTGTTAGTTTATGCGT+GGG - chr1_2:21974807-21974826 Msa0062480:intron 30.0%
AATGGGAATAAGCATAAAAG+TGG + chr1_2:21974991-21975010 None:intergenic 30.0%
TCGTTTAACAACATGTGAAT+GGG + chr1_2:21975008-21975027 None:intergenic 30.0%
!!! GGTTTTGTTTTCTTTTGTCT+TGG - chr1_2:21975073-21975092 Msa0062480:intron 30.0%
! TCAAATTTTACGGTCAACTA+GGG - chr1_2:21975274-21975293 Msa0062480:intron 30.0%
CTATCTCTTATAATGGTCAA+TGG - chr1_2:21975309-21975328 Msa0062480:intron 30.0%
! TGTTTTCTCAAAGATTTTCC+GGG - chr1_2:21975408-21975427 Msa0062480:intron 30.0%
!! TTAAAAAGGTGCTATATTCC+CGG + chr1_2:21975429-21975448 None:intergenic 30.0%
ATTAATGCAAACTGTCTCAT+GGG + chr1_2:21975503-21975522 None:intergenic 30.0%
AATTAATGCAAACTGTCTCA+TGG + chr1_2:21975504-21975523 None:intergenic 30.0%
AGACAGTTTGCATTAATTGA+GGG - chr1_2:21975506-21975525 Msa0062480:intron 30.0%
! GTTCCTCAAAAAAAGTATGT+AGG + chr1_2:21975798-21975817 None:intergenic 30.0%
GCAATATGCTTCATCTAATT+GGG + chr1_2:21976045-21976064 None:intergenic 30.0%
TGCAATATGCTTCATCTAAT+TGG + chr1_2:21976046-21976065 None:intergenic 30.0%
! AAGAGAGTATATTGCATGTA+AGG - chr1_2:21976077-21976096 Msa0062480:intron 30.0%
! AGAGAGTATATTGCATGTAA+GGG - chr1_2:21976078-21976097 Msa0062480:intron 30.0%
ATAGTGTAATAAGTCGATCA+TGG - chr1_2:21976108-21976127 Msa0062480:intron 30.0%
! CTAATAAGGAGTGTGAAAAT+TGG + chr1_2:21976178-21976197 None:intergenic 30.0%
AAGGTGGTGTAATACTAATA+AGG + chr1_2:21976192-21976211 None:intergenic 30.0%
AAGATAGAGTTTAAGTAAGG+TGG + chr1_2:21976208-21976227 None:intergenic 30.0%
AAGGAGATAAAATATGTCCT+AGG + chr1_2:21976252-21976271 None:intergenic 30.0%
TCTAAAGGGAAGAAAGAAAA+AGG + chr1_2:21976271-21976290 None:intergenic 30.0%
! TTTTTCTTTCTTCCCTTTAG+AGG - chr1_2:21976270-21976289 Msa0062480:intron 30.0%
TGAGTGAATAAACCTCTAAA+GGG + chr1_2:21976285-21976304 None:intergenic 30.0%
TTGAGTGAATAAACCTCTAA+AGG + chr1_2:21976286-21976305 None:intergenic 30.0%
TTTAGAGGTTTATTCACTCA+AGG - chr1_2:21976285-21976304 Msa0062480:intron 30.0%
CTGCATGAGAAATAATTCTA+AGG + chr1_2:21976341-21976360 None:intergenic 30.0%
! ATTATTTCTCATGCAGACAA+TGG - chr1_2:21976345-21976364 Msa0062480:intron 30.0%
! TCCAATGTTATGATTTTTGC+AGG - chr1_2:21976841-21976860 Msa0062480:intron 30.0%
AAAATAGATGAGTTGCCAAA+GGG + chr1_2:21976944-21976963 None:intergenic 30.0%
!! GCTTAATATGTTGTTGTTTG+TGG + chr1_2:21977018-21977037 None:intergenic 30.0%
AACAACAACATATTAAGCCT+AGG - chr1_2:21977020-21977039 Msa0062480:CDS 30.0%
!!! TGTTCATATTTTGGTGTACA+AGG + chr1_2:21977053-21977072 None:intergenic 30.0%
! GATGATGATGATTGATGTAA+AGG + chr1_2:21977089-21977108 None:intergenic 30.0%
CAATCATCATCATCATCATT+TGG - chr1_2:21977095-21977114 Msa0062480:CDS 30.0%
TCTTGTTGGAAAGTTTGATT+TGG + chr1_2:21977170-21977189 None:intergenic 30.0%
AAACAACTTCATCTTCATCA+TGG - chr1_2:21977215-21977234 Msa0062480:CDS 30.0%
! AGGATCAGATAAATTGACTT+TGG - chr1_2:21977712-21977731 Msa0062480:intron 30.0%
TTCATCATCTACACCTTTCT+TGG - chr1_2:21973128-21973147 Msa0062480:CDS 35.0%
TCTTGTCTGATTTCCAAGAA+AGG + chr1_2:21973144-21973163 None:intergenic 35.0%
!! AATGCATAAAGGTACTTGCA+TGG + chr1_2:21973273-21973292 None:intergenic 35.0%
! CAAATCTGTTTGTTGCCATT+AGG + chr1_2:21973762-21973781 None:intergenic 35.0%
GTATGTGAAGTGTGTCAAAA+AGG - chr1_2:21973781-21973800 Msa0062480:CDS 35.0%
TGTGTCAAAAAGGGTTTCAA+AGG - chr1_2:21973791-21973810 Msa0062480:CDS 35.0%
GTGTCAAAAAGGGTTTCAAA+GGG - chr1_2:21973792-21973811 Msa0062480:CDS 35.0%
TAACAAAGAGCCAAAGAGAA+AGG - chr1_2:21973876-21973895 Msa0062480:CDS 35.0%
!! AAGCACTTTTCTAGAAAGCA+TGG - chr1_2:21973973-21973992 Msa0062480:CDS 35.0%
!! AAAGCTCATTCTAAGACTTG+TGG - chr1_2:21974054-21974073 Msa0062480:CDS 35.0%
!! ATTCTAAGACTTGTGGTACT+AGG - chr1_2:21974061-21974080 Msa0062480:CDS 35.0%
!! TTCTAAGACTTGTGGTACTA+GGG - chr1_2:21974062-21974081 Msa0062480:CDS 35.0%
TTCACTAGTGTATGACAATG+TGG + chr1_2:21974225-21974244 None:intergenic 35.0%
TGTGTGAGTTACAATCTTCA+TGG + chr1_2:21974644-21974663 None:intergenic 35.0%
TGGAATCCATAAGAAACTAG+GGG + chr1_2:21974674-21974693 None:intergenic 35.0%
CTTGGAATCCATAAGAAACT+AGG + chr1_2:21974676-21974695 None:intergenic 35.0%
TCGTGAGTACACTGTATAAA+TGG - chr1_2:21974874-21974893 Msa0062480:intron 35.0%
CGTGAGTACACTGTATAAAT+GGG - chr1_2:21974875-21974894 Msa0062480:intron 35.0%
GTGAGTACACTGTATAAATG+GGG - chr1_2:21974876-21974895 Msa0062480:intron 35.0%
CTCGTTTAACAACATGTGAA+TGG + chr1_2:21975009-21975028 None:intergenic 35.0%
AATCTATTGTATGATGCAGC+TGG - chr1_2:21975212-21975231 Msa0062480:intron 35.0%
! CTCAAATTTTACGGTCAACT+AGG - chr1_2:21975273-21975292 Msa0062480:intron 35.0%
GAGACAGTTTGCATTAATTG+AGG - chr1_2:21975505-21975524 Msa0062480:intron 35.0%
GTTGGTGTGTACATAAGATT+TGG - chr1_2:21975637-21975656 Msa0062480:intron 35.0%
TAAGATTTGGCATAATCCCA+TGG - chr1_2:21975650-21975669 Msa0062480:intron 35.0%
AAGATTTGGCATAATCCCAT+GGG - chr1_2:21975651-21975670 Msa0062480:intron 35.0%
ATCTATACTTTACCCGTGTA+TGG + chr1_2:21975852-21975871 None:intergenic 35.0%
TCTTTATGTAGTCACTAGCT+AGG - chr1_2:21975961-21975980 Msa0062480:intron 35.0%
TCACTAGCTAGGTTCTTATT+TGG - chr1_2:21975972-21975991 Msa0062480:intron 35.0%
GTAATAAGTCGATCATGGTA+AGG - chr1_2:21976113-21976132 Msa0062480:intron 35.0%
! AGGCCACCCAAATTATATTT+TGG - chr1_2:21976133-21976152 Msa0062480:intron 35.0%
AAAATATGTCCTAGGTGTGA+TGG + chr1_2:21976244-21976263 None:intergenic 35.0%
ACCCTATACTAATGTCTGAA+CGG - chr1_2:21976514-21976533 Msa0062480:intron 35.0%
ACCGTTCAGACATTAGTATA+GGG + chr1_2:21976518-21976537 None:intergenic 35.0%
TACCGTTCAGACATTAGTAT+AGG + chr1_2:21976519-21976538 None:intergenic 35.0%
GCCTGCAAAAATCATAACAT+TGG + chr1_2:21976845-21976864 None:intergenic 35.0%
TGACAGTTTCATCACTCATA+GGG - chr1_2:21976866-21976885 Msa0062480:intron 35.0%
GAAAATAGATGAGTTGCCAA+AGG + chr1_2:21976945-21976964 None:intergenic 35.0%
TTTGGATCAGTGATGAAGAA+AGG + chr1_2:21977152-21977171 None:intergenic 35.0%
TTGAGAATTGTCCTTGATGA+AGG + chr1_2:21977193-21977212 None:intergenic 35.0%
TTGGTATTTCCTTGAAGATC+AGG + chr1_2:21977254-21977273 None:intergenic 35.0%
! CGAAGAAGTTGTGTTGTTAT+TGG + chr1_2:21977273-21977292 None:intergenic 35.0%
TAACAACACAACTTCTTCGT+CGG - chr1_2:21977274-21977293 Msa0062480:intron 35.0%
GGAAAGAAGCTTAGGTTAAA+AGG + chr1_2:21977305-21977324 None:intergenic 35.0%
TGGTATTAGGAAAGAAGCTT+AGG + chr1_2:21977313-21977332 None:intergenic 35.0%
AGCTTCTTTCCTAATACCAA+TGG - chr1_2:21977314-21977333 Msa0062480:intron 35.0%
! GTGTTGTTACCATTGGTATT+AGG + chr1_2:21977326-21977345 None:intergenic 35.0%
! ATGCATTGTGTTGTTACCAT+TGG + chr1_2:21977333-21977352 None:intergenic 35.0%
GAAAAACCTTCATGTTGATG+AGG + chr1_2:21977389-21977408 None:intergenic 35.0%
! GAAGGTTTTTCTTCACTCTT+TGG - chr1_2:21977398-21977417 Msa0062480:intron 35.0%
CTTCAAAAAGCTGCTCAAAT+TGG - chr1_2:21977482-21977501 Msa0062480:intron 35.0%
ACGACTATCAACAACAACAA+TGG - chr1_2:21977515-21977534 Msa0062480:CDS 35.0%
TCATCAATCCATGTAGATGT+TGG + chr1_2:21977562-21977581 None:intergenic 35.0%
TTGATGAACTCTCTTGGTAA+TGG - chr1_2:21977575-21977594 Msa0062480:intron 35.0%
! AGACTTTGTTGTGATGATGA+TGG + chr1_2:21977671-21977690 None:intergenic 35.0%
TCATCACAACAAAGTCTAGT+TGG - chr1_2:21977674-21977693 Msa0062480:intron 35.0%
!! CTAGTTGGTAATTTGTGCTT+TGG - chr1_2:21977689-21977708 Msa0062480:intron 35.0%
!! ACTTTGGATTTTCTTGGTGT+TGG - chr1_2:21977728-21977747 Msa0062480:CDS 35.0%
AGAAATATGAGTAGTGCAAG+TGG - chr1_2:21977761-21977780 Msa0062480:CDS 35.0%
CATATTGTTCATTGCACTCA+TGG + chr1_2:21977822-21977841 None:intergenic 35.0%
CATGAGTGCAATGAACAATA+TGG - chr1_2:21977820-21977839 Msa0062480:CDS 35.0%
GAACAATATGGATCCTAAGT+TGG - chr1_2:21977832-21977851 Msa0062480:CDS 35.0%
ACTATCTCCAAAGACCCTAA+TGG - chr1_2:21973744-21973763 Msa0062480:CDS 40.0%
TTTGTTGCCATTAGGGTCTT+TGG + chr1_2:21973754-21973773 None:intergenic 40.0%
!! CTCTTTTGCTTTAGCTTCCA+AGG + chr1_2:21973856-21973875 None:intergenic 40.0%
AGTGCTTCTTAATTCCAGTG+AGG + chr1_2:21973960-21973979 None:intergenic 40.0%
! GAAAGCATGGTGAGAAAAAG+TGG - chr1_2:21973986-21974005 Msa0062480:CDS 40.0%
GGAGGATCCATAATTGAAAC+TGG - chr1_2:21974302-21974321 Msa0062480:intron 40.0%
!! TCTCTGAGCAGCATTTTGAT+TGG - chr1_2:21974617-21974636 Msa0062480:intron 40.0%
AATCCATAAGAAACTAGGGG+AGG + chr1_2:21974671-21974690 None:intergenic 40.0%
!! AGTTTATGCGTGGGTTTTAG+TGG - chr1_2:21974816-21974835 Msa0062480:intron 40.0%
! TCACATGAGTTGAACTTGCT+TGG - chr1_2:21975052-21975071 Msa0062480:intron 40.0%
CAGTTTGCATTAATTGAGGG+TGG - chr1_2:21975509-21975528 Msa0062480:intron 40.0%
TGCTTTCAGTGATCAAAGAG+AGG - chr1_2:21975586-21975605 Msa0062480:intron 40.0%
ATCAAAGAGAGGACTCAAAG+TGG - chr1_2:21975597-21975616 Msa0062480:intron 40.0%
CTCAAAGTGGTAGTTCGATA+AGG - chr1_2:21975610-21975629 Msa0062480:intron 40.0%
GTAGTTCGATAAGGAGTTGT+TGG - chr1_2:21975619-21975638 Msa0062480:intron 40.0%
AATGAAAAAAGAGGGCCCAT+GGG + chr1_2:21975669-21975688 None:intergenic 40.0%
TTCATTTGTCCATCACACCT+AGG - chr1_2:21976232-21976251 Msa0062480:intron 40.0%
! TCTCATGCAGACAATGGTTT+TGG - chr1_2:21976351-21976370 Msa0062480:intron 40.0%
! AGAGTACTTAACCCACAACT+CGG - chr1_2:21976588-21976607 Msa0062480:intron 40.0%
TTGTACTTATCCCGAGTTGT+GGG + chr1_2:21976602-21976621 None:intergenic 40.0%
TTTGTACTTATCCCGAGTTG+TGG + chr1_2:21976603-21976622 None:intergenic 40.0%
ACAACTCGGGATAAGTACAA+AGG - chr1_2:21976602-21976621 Msa0062480:intron 40.0%
CAACTCGGGATAAGTACAAA+GGG - chr1_2:21976603-21976622 Msa0062480:intron 40.0%
GTGACAGTTTCATCACTCAT+AGG - chr1_2:21976865-21976884 Msa0062480:intron 40.0%
TCCACAAACCACATGAGTTT+AGG - chr1_2:21976963-21976982 Msa0062480:CDS 40.0%
ACCTAAACTCATGTGGTTTG+TGG + chr1_2:21976967-21976986 None:intergenic 40.0%
TCCTTGTTGGGTGCTTATTT+GGG + chr1_2:21976994-21977013 None:intergenic 40.0%
GTGTACAAGGAATGTTACCT+AGG + chr1_2:21977040-21977059 None:intergenic 40.0%
ATCAGTGATGAAGAAAGGTG+AGG + chr1_2:21977147-21977166 None:intergenic 40.0%
TTCCAACAAGACCTTCATCA+AGG - chr1_2:21977179-21977198 Msa0062480:CDS 40.0%
ATGCAACTTCCTGATCTTCA+AGG - chr1_2:21977242-21977261 Msa0062480:CDS 40.0%
CATCATCCTCATCAACATGA+AGG - chr1_2:21977380-21977399 Msa0062480:intron 40.0%
GATCAACACCAACATCTACA+TGG - chr1_2:21977551-21977570 Msa0062480:CDS 40.0%
! CATGGATTGATGAACTCTCT+TGG - chr1_2:21977569-21977588 Msa0062480:intron 40.0%
TGGTCAGTTTCACAATGTTG+AGG - chr1_2:21977628-21977647 Msa0062480:intron 40.0%
TCAGTTTCACAATGTTGAGG+AGG - chr1_2:21977631-21977650 Msa0062480:intron 40.0%
!! GTTGGTAATTTGTGCTTTGG+AGG - chr1_2:21977692-21977711 Msa0062480:intron 40.0%
!!! TTGGATTTTCTTGGTGTTGG+AGG - chr1_2:21977731-21977750 Msa0062480:CDS 40.0%
!!! TTTTCTTGGTGTTGGAGGAA+TGG - chr1_2:21977736-21977755 Msa0062480:CDS 40.0%
AATATGAGTAGTGCAAGTGG+TGG - chr1_2:21977764-21977783 Msa0062480:CDS 40.0%
!! CCTTGTGTTGATTCCAACTT+AGG + chr1_2:21977848-21977867 None:intergenic 40.0%
! CCTAAGTTGGAATCAACACA+AGG - chr1_2:21977845-21977864 Msa0062480:CDS 40.0%
!! AGCAGTTGATGAAGCATCTG+TGG + chr1_2:21973202-21973221 None:intergenic 45.0%
GAAAACAGATCCAGATGCAG+AGG - chr1_2:21973714-21973733 Msa0062480:CDS 45.0%
GAAGAGGACACAATTTGCCT+TGG - chr1_2:21973836-21973855 Msa0062480:CDS 45.0%
!! TGGTGAACACATGTTGGTTC+TGG + chr1_2:21973913-21973932 None:intergenic 45.0%
TGTTCACCATGACCCTTCAA+GGG - chr1_2:21973924-21973943 Msa0062480:CDS 45.0%
! AGGGAGTATAGATGTGACTG+TGG - chr1_2:21974081-21974100 Msa0062480:CDS 45.0%
ACTGTGGTACTCTCTTCTCA+AGG - chr1_2:21974097-21974116 Msa0062480:CDS 45.0%
TGTCCTCCCCTAGTTTCTTA+TGG - chr1_2:21974665-21974684 Msa0062480:intron 45.0%
!! TTATGCGTGGGTTTTAGTGG+AGG - chr1_2:21974819-21974838 Msa0062480:intron 45.0%
!! GTGGGTTTTAGTGGAGGATA+TGG - chr1_2:21974825-21974844 Msa0062480:intron 45.0%
AGGATATGGCAGTGTGAATG+TGG - chr1_2:21974839-21974858 Msa0062480:intron 45.0%
CAATGAAAAAAGAGGGCCCA+TGG + chr1_2:21975670-21975689 None:intergenic 45.0%
GAGTACTTAACCCACAACTC+GGG - chr1_2:21976589-21976608 Msa0062480:intron 45.0%
CCAAAGGGTTCATGTTGGAA+GGG + chr1_2:21976929-21976948 None:intergenic 45.0%
AGTTGCCAAAGGGTTCATGT+TGG + chr1_2:21976934-21976953 None:intergenic 45.0%
GGGATAGACCTAAACTCATG+TGG + chr1_2:21976974-21976993 None:intergenic 45.0%
TCCCAAATAAGCACCCAACA+AGG - chr1_2:21976990-21977009 Msa0062480:CDS 45.0%
CTCCTTGTTGGGTGCTTATT+TGG + chr1_2:21976995-21977014 None:intergenic 45.0%
GTTGTTTGTGGCTCCTTGTT+GGG + chr1_2:21977006-21977025 None:intergenic 45.0%
! TGTTGTTTGTGGCTCCTTGT+TGG + chr1_2:21977007-21977026 None:intergenic 45.0%
! GTCCTTGATGAAGGTCTTGT+TGG + chr1_2:21977184-21977203 None:intergenic 45.0%
!!! TAAATTATGTTTTAATTTTT+AGG + chr1_2:21976426-21976445 None:intergenic 5.0%
AGGTACTTGCATGGTGTTCC+AGG + chr1_2:21973264-21973283 None:intergenic 50.0%
AGTGCTATCACCTCTGCATC+TGG + chr1_2:21973727-21973746 None:intergenic 50.0%
GGGTCATGGTGAACACATGT+TGG + chr1_2:21973919-21973938 None:intergenic 50.0%
GTGTTCACCATGACCCTTCA+AGG - chr1_2:21973923-21973942 Msa0062480:CDS 50.0%
CCCTTCCAACATGAACCCTT+TGG - chr1_2:21976926-21976945 Msa0062480:CDS 50.0%
GCCAAAGGGTTCATGTTGGA+AGG + chr1_2:21976930-21976949 None:intergenic 50.0%
GTTGTCTTCGCCACACATGT+CGG - chr1_2:21977448-21977467 Msa0062480:intron 50.0%
AATGCAGTTGCCGACATGTG+TGG + chr1_2:21977461-21977480 None:intergenic 50.0%
ATGAGTAGTGCAAGTGGTGG+AGG - chr1_2:21977767-21977786 Msa0062480:CDS 50.0%
CAAGAGCCCTTGAAGGGTCA+TGG + chr1_2:21973933-21973952 None:intergenic 55.0%
CATGACCCTTCAAGGGCTCT+TGG - chr1_2:21973931-21973950 Msa0062480:CDS 55.0%
GGTCACCAAGAGCCCTTGAA+GGG + chr1_2:21973939-21973958 None:intergenic 55.0%
AGGTCACCAAGAGCCCTTGA+AGG + chr1_2:21973940-21973959 None:intergenic 55.0%
! TTGAGGGTGGCCCCATTTTG+TGG - chr1_2:21975522-21975541 Msa0062480:intron 55.0%
! AGGGCTCTTGGTGACCTCAC+TGG - chr1_2:21973943-21973962 Msa0062480:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 21973117 21977883 21973117 ID=Msa0062480;Name=Msa0062480
chr1_2 mRNA 21973117 21977883 21973117 ID=Msa0062480-mRNA-1;Parent=Msa0062480;Name=Msa0062480-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.75|1|1|4|0|548
chr1_2 exon 21977723 21977883 21977723 ID=Msa0062480-mRNA-1:exon:8131;Parent=Msa0062480-mRNA-1
chr1_2 exon 21977510 21977577 21977510 ID=Msa0062480-mRNA-1:exon:8130;Parent=Msa0062480-mRNA-1
chr1_2 exon 21976882 21977278 21976882 ID=Msa0062480-mRNA-1:exon:8129;Parent=Msa0062480-mRNA-1
chr1_2 exon 21973117 21974137 21973117 ID=Msa0062480-mRNA-1:exon:8128;Parent=Msa0062480-mRNA-1
chr1_2 CDS 21977723 21977883 21977723 ID=Msa0062480-mRNA-1:cds;Parent=Msa0062480-mRNA-1
chr1_2 CDS 21977510 21977577 21977510 ID=Msa0062480-mRNA-1:cds;Parent=Msa0062480-mRNA-1
chr1_2 CDS 21976882 21977278 21976882 ID=Msa0062480-mRNA-1:cds;Parent=Msa0062480-mRNA-1
chr1_2 CDS 21973117 21974137 21973117 ID=Msa0062480-mRNA-1:cds;Parent=Msa0062480-mRNA-1
Gene Sequence

>Msa0062480

ATGGCTGCTGCTTCATCATCTACACCTTTCTTGGAAATCAGACAAGAAAATCAAAGTCAGATTACACAACAACATCAATCTTCCACAGATGCTTCATCAACTGCTGCTCAACCTTTAGTTCCTCAGAAAAAAAGAAGAAATCAACCTGGAACACCATGCAATATAGGGTTACCAAGTTTTTCTAATGAAAAGTGGTTTGAAATTGAATGGGAAATCTTCTTCCCTCTATATCCAGATGCAGAGGTGATAGCACTATCTCCAAAGACCCTAATGGCAACAAACAGATTTGTATGTGAAGTGTGTCAAAAAGGGTTTCAAAGGGAGCAAAATTTGCAACTACATAGAAGAGGACACAATTTGCCTTGGAAGCTAAAGCAAAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATTTGTGTCCAGAACCAACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGTGACCTCACTGGAATTAAGAAGCACTTTTCTAGAAAGCATGGTGAGAAAAAGTGGAAATGTGAAAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGTACTAGGGAGTATAGATGTGACTGTGGTACTCTCTTCTCAAGGCGTGACAGTTTCATCACTCATAGGGCATTTTGTGATGCACTAGCACATGAAAATGCAAGACACCCTTCCAACATGAACCCTTTGGCAACTCATCTATTTTCCACAAACCACATGAGTTTAGGTCTATCCCAAATAAGCACCCAACAAGGAGCCACAAACAACAACATATTAAGCCTAGGTAACATTCCTTGTACACCAAAATATGAACATCATCTAATCTCACCTTTACATCAATCATCATCATCATCATTTGGTCAACAACAACAACAATCAATGTCTTCCTCACCTTTCTTCATCACTGATCCAAATCAAACTTTCCAACAAGACCTTCATCAAGGACAATTCTCAAACAAACAACTTCATCTTCATCATGGTCTCATGCAACTTCCTGATCTTCAAGGAAATACCAATAACAACACAACTTCTTCGTCGGTATCGCCTTTTAACCTAAGCTTCTTTCCTAATACCAATGGTAACAACACAATGCATGATCAATTCAACAACATAAGTGAATCTCATCATCCTCATCAACATGAAGGTTTTTCTTCACTCTTTGGTAATTCATCATTGCAACAAGAGAACATGTTGTCTTCGCCACACATGTCGGCAACTGCATTGCTTCAAAAAGCTGCTCAAATTGGTTCAACAACAACGACTATCAACAACAACAATGGTGTAGAATCTGATGATCAACACCAACATCTACATGGATTGATGAACTCTCTTGGTAATGGAAATACTTCAATATATGATAACAATAATCTTGGTCAGTTTCACAATGTTGAGGAGGAGAATAAAAAGATGCCATCATCATCACAACAAAGTCTAGTTGGTAATTTGTGCTTTGGAGGATCAGATAAATTGACTTTGGATTTTCTTGGTGTTGGAGGAATGGTGAGAAATATGAGTAGTGCAAGTGGTGGAGGATTTTCACAAAGAGAGCAGCAACTACACTCCATGAGTGCAATGAACAATATGGATCCTAAGTTGGAATCAACACAAGGAAATCAACCTTTTTGA
Protein sequence

>Msa0062480

MAAASSSTPFLEIRQENQSQITQQHQSSTDASSTAAQPLVPQKKRRNQPGTPCNIGLPSFSNEKWFEIEWEIFFPLYPDAEVIALSPKTLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHENARHPSNMNPLATHLFSTNHMSLGLSQISTQQGATNNNILSLGNIPCTPKYEHHLISPLHQSSSSSFGQQQQQSMSSSPFFITDPNQTFQQDLHQGQFSNKQLHLHHGLMQLPDLQGNTNNNTTSSSVSPFNLSFFPNTNGNNTMHDQFNNISESHHPHQHEGFSSLFGNSSLQQENMLSSPHMSATALLQKAAQIGSTTTTINNNNGVESDDQHQHLHGLMNSLGNGNTSIYDNNNLGQFHNVEEENKKMPSSSQQSLVGNLCFGGSDKLTLDFLGVGGMVRNMSSASGGGFSQREQQLHSMSAMNNMDPKLESTQGNQPF*