Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0109460 | sp|P24805|TSJT1_TOBAC | 41.892 | 148 | 84 | 1 | 1 | 146 | 1 | 148 | 1.16e-37 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0109460 | A0A072VSE8 | 96.000 | 250 | 10 | 0 | 1 | 250 | 1 | 250 | 4.76e-179 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0109460 | 0.800130 | 1.664628e-48 | -8.615850e-47 |
| Msa0006380 | Msa0109460 | 0.804942 | 1.695336e-49 | -8.615850e-47 |
| Msa0027260 | Msa0109460 | 0.819351 | 1.215626e-52 | -8.615850e-47 |
| Msa0055180 | Msa0109460 | 0.818213 | 2.204702e-52 | -8.615850e-47 |
| Msa0064520 | Msa0109460 | 0.850174 | 2.014050e-60 | -8.615850e-47 |
| Msa0100740 | Msa0109460 | 0.827171 | 1.812729e-54 | -8.615850e-47 |
| Msa0109460 | Msa0140820 | 0.826128 | 3.214645e-54 | -8.615850e-47 |
| Msa0109460 | Msa0220720 | 0.813488 | 2.495885e-51 | -8.615850e-47 |
| Msa0109460 | Msa0229230 | 0.825777 | 3.896147e-54 | -8.615850e-47 |
| Msa0109460 | Msa0232050 | 0.806620 | 7.529428e-50 | -8.615850e-47 |
| Msa0109460 | Msa0262310 | 0.804841 | 1.779731e-49 | -8.615850e-47 |
| Msa0109460 | Msa0272490 | 0.801022 | 1.095345e-48 | -8.615850e-47 |
| Msa0109460 | Msa0280610 | 0.807404 | 5.139506e-50 | -8.615850e-47 |
| Msa0109460 | Msa0299870 | 0.808195 | 3.490025e-50 | -8.615850e-47 |
| Msa0109460 | Msa0337240 | 0.813683 | 2.260394e-51 | -8.615850e-47 |
| Msa0109460 | Msa0340380 | 0.819824 | 9.480027e-53 | -8.615850e-47 |
| Msa0109460 | Msa0366890 | 0.810321 | 1.221812e-50 | -8.615850e-47 |
| Msa0109460 | Msa0369050 | 0.813718 | 2.221667e-51 | -8.615850e-47 |
| Msa0109460 | Msa0369450 | 0.808711 | 2.707799e-50 | -8.615850e-47 |
| Msa0109460 | Msa0376300 | 0.809691 | 1.669609e-50 | -8.615850e-47 |
| Msa0109460 | Msa0376310 | 0.814445 | 1.534772e-51 | -8.615850e-47 |
| Msa0109460 | Msa0385580 | 0.826913 | 2.089655e-54 | -8.615850e-47 |
| Msa0109460 | Msa0395820 | 0.815062 | 1.120440e-51 | -8.615850e-47 |
| Msa0109460 | Msa0468330 | 0.817847 | 2.666294e-52 | -8.615850e-47 |
| Msa0109460 | Msa0497210 | 0.807718 | 4.407017e-50 | -8.615850e-47 |
| Msa0109460 | Msa0548240 | 0.815981 | 6.997364e-52 | -8.615850e-47 |
| Msa0109460 | Msa0615710 | 0.824686 | 7.055660e-54 | -8.615850e-47 |
| Msa0109460 | Msa0623790 | 0.804327 | 2.278332e-49 | -8.615850e-47 |
| Msa0109460 | Msa0847770 | 0.801494 | 8.768089e-49 | -8.615850e-47 |
| Msa0109460 | Msa0892120 | 0.829136 | 6.094056e-55 | -8.615850e-47 |
| Msa0109460 | Msa1006840 | 0.808542 | 2.942191e-50 | -8.615850e-47 |
| Msa0109460 | Msa1013400 | 0.812960 | 3.259036e-51 | -8.615850e-47 |
| Msa0109460 | Msa1081150 | 0.806003 | 1.015727e-49 | -8.615850e-47 |
| Msa0109460 | Msa1081930 | 0.820134 | 8.050886e-53 | -8.615850e-47 |
| Msa0109460 | Msa1093530 | 0.800558 | 1.362256e-48 | -8.615850e-47 |
| Msa0109460 | Msa1104140 | 0.805770 | 1.136846e-49 | -8.615850e-47 |
| Msa0109460 | Msa1165940 | 0.820627 | 6.207292e-53 | -8.615850e-47 |
| Msa0109460 | Msa1218600 | 0.803309 | 3.706608e-49 | -8.615850e-47 |
| Msa0109460 | Msa1225700 | 0.804065 | 2.583126e-49 | -8.615850e-47 |
| Msa0109460 | Msa1244600 | 0.821300 | 4.344593e-53 | -8.615850e-47 |
| Msa0109460 | Msa1254730 | 0.825474 | 4.595964e-54 | -8.615850e-47 |
| Msa0109460 | Msa1294820 | 0.820134 | 8.051848e-53 | -8.615850e-47 |
| Msa0109460 | Msa1385770 | 0.822087 | 2.858091e-53 | -8.615850e-47 |
| Msa0109460 | Msa1409240 | 0.820827 | 5.583100e-53 | -8.615850e-47 |
| Msa0109460 | Msa1434140 | 0.818477 | 1.920659e-52 | -8.615850e-47 |
| Msa0109460 | Msa1451560 | 0.804003 | 2.660783e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0109460 | MtrunA17_Chr1g0166351 | 96.000 | 250 | 10 | 0 | 1 | 250 | 1 | 250 | 0.0 | 501 |
| Msa0109460 | MtrunA17_Chr1g0204611 | 81.928 | 249 | 45 | 0 | 1 | 249 | 1 | 249 | 5.00e-156 | 433 |
| Msa0109460 | MtrunA17_Chr2g0281901 | 46.000 | 250 | 131 | 3 | 1 | 248 | 1 | 248 | 2.31e-81 | 244 |
| Msa0109460 | MtrunA17_Chr4g0047531 | 46.185 | 249 | 128 | 4 | 1 | 245 | 64 | 310 | 1.33e-74 | 229 |
| Msa0109460 | MtrunA17_Chr2g0317901 | 47.410 | 251 | 123 | 4 | 1 | 246 | 1 | 247 | 1.24e-73 | 224 |
| Msa0109460 | MtrunA17_Chr2g0287871 | 47.391 | 230 | 117 | 3 | 1 | 228 | 1 | 228 | 1.73e-73 | 224 |
| Msa0109460 | MtrunA17_Chr4g0065571 | 45.455 | 231 | 121 | 3 | 1 | 228 | 1 | 229 | 1.14e-67 | 209 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0109460 | AT3G22850.1 | 69.880 | 249 | 73 | 1 | 1 | 249 | 1 | 247 | 1.67e-132 | 374 |
| Msa0109460 | AT5G43830.1 | 69.600 | 250 | 75 | 1 | 1 | 249 | 1 | 250 | 5.57e-130 | 368 |
| Msa0109460 | AT4G27450.1 | 45.914 | 257 | 121 | 4 | 1 | 247 | 1 | 249 | 3.80e-80 | 241 |
| Msa0109460 | AT3G15450.1 | 45.817 | 251 | 129 | 4 | 1 | 247 | 1 | 248 | 2.44e-78 | 237 |
| Msa0109460 | AT5G19140.1 | 48.261 | 230 | 115 | 3 | 1 | 228 | 1 | 228 | 2.77e-75 | 228 |
| Msa0109460 | AT5G19140.2 | 45.652 | 230 | 109 | 4 | 1 | 228 | 1 | 216 | 2.13e-66 | 205 |
| Msa0109460 | AT5G19140.3 | 52.326 | 172 | 79 | 2 | 58 | 228 | 23 | 192 | 6.57e-62 | 193 |
| Msa0109460 | AT3G15450.2 | 43.750 | 192 | 103 | 3 | 1 | 188 | 1 | 191 | 3.15e-53 | 171 |
| Msa0109460 | AT3G15450.3 | 42.169 | 166 | 91 | 3 | 1 | 162 | 1 | 165 | 1.17e-40 | 138 |
Find 54 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATCAATTCCCCAGAAAA+AGG | 0.236259 | 1_3:+21442447 | None:intergenic |
| GATGAAACTGAGTTTGATTC+TGG | 0.248097 | 1_3:+21444460 | None:intergenic |
| AAATCATGTGACTACCTTTA+GGG | 0.291576 | 1_3:+21442353 | None:intergenic |
| TCACCAGAACTATCAATTCT+TGG | 0.292250 | 1_3:+21441617 | None:intergenic |
| CCATTGTCATAGAGGCTTAC+AGG | 0.301949 | 1_3:-21442692 | Msa0109460:CDS |
| GCTAATCTTAAACAACAATA+TGG | 0.304844 | 1_3:-21442741 | Msa0109460:CDS |
| GAACTATCAATTCTTGGTAT+TGG | 0.316938 | 1_3:+21441623 | None:intergenic |
| GGATGCTTCTTTACAACATC+TGG | 0.326286 | 1_3:-21441686 | Msa0109460:CDS |
| ATAATATCAACTTTCGCTCT+TGG | 0.352977 | 1_3:-21441382 | Msa0109460:three_prime_UTR |
| TAGCCTCACCAGATTGTAAC+AGG | 0.376356 | 1_3:+21441450 | None:intergenic |
| CATTTGTTCCTGTTACAATC+TGG | 0.380086 | 1_3:-21441458 | Msa0109460:three_prime_UTR |
| TCGCAGGCTGTTTGCGGTTG+TGG | 0.387192 | 1_3:-21442805 | Msa0109460:intron |
| ATTGATACCTTGGAAGTAAA+GGG | 0.399756 | 1_3:+21444329 | None:intergenic |
| CCATGTTCGCAGGCTGTTTG+CGG | 0.401263 | 1_3:-21442811 | Msa0109460:intron |
| ATACCAAGAATTGATAGTTC+TGG | 0.413580 | 1_3:-21441620 | Msa0109460:CDS |
| GACATCTTCTGCTTGTTTCA+CGG | 0.416703 | 1_3:-21442780 | Msa0109460:CDS |
| GAGTTGGTAGTGCTGCTAAC+TGG | 0.444345 | 1_3:-21441532 | Msa0109460:CDS |
| TTACAACATCTGGAGGTTTG+AGG | 0.452208 | 1_3:-21441676 | Msa0109460:CDS |
| AGATAAATGCAAATTTGCCT+TGG | 0.457772 | 1_3:+21442619 | None:intergenic |
| AGATTAAGAGTAACAGAAGA+AGG | 0.477662 | 1_3:+21444394 | None:intergenic |
| GATTGATACCTTGGAAGTAA+AGG | 0.479097 | 1_3:+21444328 | None:intergenic |
| CTGTTAATGTGATGGATACT+TGG | 0.491330 | 1_3:-21441277 | Msa0109460:three_prime_UTR |
| AAAACAACCCTTTACTTCCA+AGG | 0.510463 | 1_3:-21444336 | Msa0109460:intron |
| ATCACATTAACAGTTTATGC+AGG | 0.510474 | 1_3:+21441287 | None:intergenic |
| ATCAACTTTCGCTCTTGGAT+CGG | 0.515703 | 1_3:-21441377 | Msa0109460:three_prime_UTR |
| CACAACTTGATCCGCAGGAT+AGG | 0.519920 | 1_3:+21442650 | None:intergenic |
| TGCATAAACTGTTAATGTGA+TGG | 0.520537 | 1_3:-21441285 | Msa0109460:three_prime_UTR |
| ACAACTTGATCCGCAGGATA+GGG | 0.522782 | 1_3:+21442651 | None:intergenic |
| GATTCTAAGAAGGAAACAAC+TGG | 0.530166 | 1_3:-21441563 | Msa0109460:CDS |
| TCTGGACTCTGTAAACCCTC+TGG | 0.530652 | 1_3:+21444478 | None:intergenic |
| ACATTGAGATGATACTCTCT+TGG | 0.533961 | 1_3:-21441418 | Msa0109460:three_prime_UTR |
| ATTGAACAAAACAGCTAATG+AGG | 0.536234 | 1_3:-21442718 | Msa0109460:CDS |
| TTAGCAGCACTACCAACTCT+TGG | 0.549670 | 1_3:+21441536 | None:intergenic |
| AGTGGATGCTGATTCTAAGA+AGG | 0.550594 | 1_3:-21441573 | Msa0109460:CDS |
| TCTCTCACAACTTGATCCGC+AGG | 0.555000 | 1_3:+21442645 | None:intergenic |
| TGAGGTGACCATTGTCATAG+AGG | 0.555616 | 1_3:-21442700 | Msa0109460:CDS |
| ATGTGACTACCTTTAGGGAA+TGG | 0.573343 | 1_3:+21442358 | None:intergenic |
| CCTGTAAGCCTCTATGACAA+TGG | 0.574045 | 1_3:+21442692 | None:intergenic |
| TGCTTCTTTACAACATCTGG+AGG | 0.587901 | 1_3:-21441683 | Msa0109460:CDS |
| GTTCCTGTTACAATCTGGTG+AGG | 0.592712 | 1_3:-21441453 | Msa0109460:three_prime_UTR |
| ACAACTGGCATGCCAAGAGT+TGG | 0.596937 | 1_3:-21441548 | Msa0109460:CDS |
| GATTAAGAGTAACAGAAGAA+GGG | 0.604034 | 1_3:+21444395 | None:intergenic |
| ATTGGCTTCAACTCGTGAAG+CGG | 0.627191 | 1_3:+21441641 | None:intergenic |
| ACAGCTCTTACTAACAATCT+CGG | 0.632227 | 1_3:+21442396 | None:intergenic |
| TACAGGACTCTGAGAGATCG+TGG | 0.638700 | 1_3:-21442675 | Msa0109460:CDS |
| GTGTGGTTCAACTTTCAAAG+TGG | 0.640815 | 1_3:-21441591 | Msa0109460:CDS |
| TCTGTTGCGAAAAGTCCAGA+GGG | 0.654809 | 1_3:-21444493 | Msa0109460:CDS |
| ATCTGTTGCGAAAAGTCCAG+AGG | 0.658414 | 1_3:-21444494 | Msa0109460:CDS |
| CAAGTTGTGAGAGATTTCCA+AGG | 0.660044 | 1_3:-21442636 | Msa0109460:CDS |
| AGATCGTGGTCCCTATCCTG+CGG | 0.660971 | 1_3:-21442661 | Msa0109460:CDS |
| GATTAGCAACATTATCAATG+TGG | 0.662470 | 1_3:+21442757 | None:intergenic |
| GATAGTTCTGGTGAAATGTG+TGG | 0.684676 | 1_3:-21441608 | Msa0109460:CDS |
| GAGATTGTTAGTAAGAGCTG+TGG | 0.686661 | 1_3:-21442394 | Msa0109460:CDS |
| ACTTACAGCAGCAACAAACG+CGG | 0.705266 | 1_3:+21442575 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAATAAAAAAAAT+AGG | + | chr1_3:21441587-21441606 | None:intergenic | 0.0% |
| !!! | TTATGAATAATTTTATTTAG+TGG | - | chr1_3:21441781-21441800 | Msa0109460:intron | 10.0% |
| !!! | TTTTGTAGTTTATAATTATA+TGG | - | chr1_3:21442070-21442089 | Msa0109460:intron | 10.0% |
| !!! | AAAGTTTATCTTTTGATTAT+TGG | - | chr1_3:21441827-21441846 | Msa0109460:intron | 15.0% |
| !!! | AAGTTTATCTTTTGATTATT+GGG | - | chr1_3:21441828-21441847 | Msa0109460:intron | 15.0% |
| !! | TAGTTTATAATTATATGGTT+TGG | - | chr1_3:21442075-21442094 | Msa0109460:intron | 15.0% |
| !! | TATTGTTGAAATTATATTCA+TGG | - | chr1_3:21442103-21442122 | Msa0109460:intron | 15.0% |
| !! | TTATTAATGATCTTAATCTA+AGG | - | chr1_3:21442605-21442624 | Msa0109460:CDS | 15.0% |
| !! | AATAGACAAGTAAAAAATAA+GGG | + | chr1_3:21443875-21443894 | None:intergenic | 15.0% |
| !! | AAATAGACAAGTAAAAAATA+AGG | + | chr1_3:21443876-21443895 | None:intergenic | 15.0% |
| !! | AACATATATACAAACATATA+TGG | + | chr1_3:21444165-21444184 | None:intergenic | 15.0% |
| !! | ATATTTGAAAAGATCAAAGT+TGG | - | chr1_3:21441614-21441633 | Msa0109460:CDS | 20.0% |
| !! | TATTACATATCCAAAACAAA+AGG | + | chr1_3:21441642-21441661 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGGATATGTAATA+AGG | - | chr1_3:21441642-21441661 | Msa0109460:CDS | 20.0% |
| !!! | TTGTTTTGGATATGTAATAA+GGG | - | chr1_3:21441643-21441662 | Msa0109460:CDS | 20.0% |
| !!! | ATTGGGTTTAATTTTGATTT+TGG | - | chr1_3:21441845-21441864 | Msa0109460:intron | 20.0% |
| !!! | TTGGGTTTAATTTTGATTTT+GGG | - | chr1_3:21441846-21441865 | Msa0109460:intron | 20.0% |
| !!! | TAATGAGTTGGATTAAAATA+TGG | - | chr1_3:21441882-21441901 | Msa0109460:intron | 20.0% |
| !!! | TTGTTGTATTGATTATGTTT+TGG | - | chr1_3:21441979-21441998 | Msa0109460:intron | 20.0% |
| !! | AGCAGTAAAAAAAATATGAA+GGG | + | chr1_3:21442745-21442764 | None:intergenic | 20.0% |
| !! | AAGCAGTAAAAAAAATATGA+AGG | + | chr1_3:21442746-21442765 | None:intergenic | 20.0% |
| !! | TCTAATTGCTAATAAAGATT+AGG | + | chr1_3:21443631-21443650 | None:intergenic | 20.0% |
| !! | ATTGTTAAACTAGAAAAGTT+TGG | + | chr1_3:21443761-21443780 | None:intergenic | 20.0% |
| !!! | AAACTCAATGTTTTAAAAAC+TGG | + | chr1_3:21443964-21443983 | None:intergenic | 20.0% |
| !!! | TCAATTGTAATTTGTAACTT+TGG | + | chr1_3:21443992-21444011 | None:intergenic | 20.0% |
| !! | AAATCAGACATATAATTTCA+CGG | + | chr1_3:21444029-21444048 | None:intergenic | 20.0% |
| !! | ATATGTTTGTATATATGTTC+AGG | - | chr1_3:21444166-21444185 | Msa0109460:intron | 20.0% |
| !!! | CGATATTTTTGTTTAAAACT+AGG | + | chr1_3:21444525-21444544 | None:intergenic | 20.0% |
| ! | TCTTTGTACTATTTAGATGT+AGG | - | chr1_3:21441724-21441743 | Msa0109460:intron | 25.0% |
| !!! | TTTTGGAATTCATACTTGTT+GGG | - | chr1_3:21441996-21442015 | Msa0109460:intron | 25.0% |
| !! | AATTTTGTGTGCTATATAGT+TGG | - | chr1_3:21442135-21442154 | Msa0109460:intron | 25.0% |
| ! | GACAAAAAATAATCTGGAAA+AGG | + | chr1_3:21442163-21442182 | None:intergenic | 25.0% |
| ! | GAGTTAGACAAAAAATAATC+TGG | + | chr1_3:21442169-21442188 | None:intergenic | 25.0% |
| !!! | TATTGATAGTTTTTCAGAAC+AGG | - | chr1_3:21442437-21442456 | Msa0109460:CDS | 25.0% |
| !!! | ATTTTCCTTGTTCTTTGTTT+GGG | - | chr1_3:21442523-21442542 | Msa0109460:intron | 25.0% |
| ! | ATCTTAAAGGAGAACTTATA+AGG | + | chr1_3:21442661-21442680 | None:intergenic | 25.0% |
| ! | ATACACCAAATCAATCTTAA+AGG | + | chr1_3:21442674-21442693 | None:intergenic | 25.0% |
| ! | GCTAATCTTAAACAACAATA+TGG | - | chr1_3:21443132-21443151 | Msa0109460:intron | 25.0% |
| !! | ATACTATCGTATTTCTTTTC+AGG | - | chr1_3:21443385-21443404 | Msa0109460:intron | 25.0% |
| !!! | CCTTTTTATTTATGTAGAGA+AGG | + | chr1_3:21443551-21443570 | None:intergenic | 25.0% |
| ! | CCTTCTCTACATAAATAAAA+AGG | - | chr1_3:21443548-21443567 | Msa0109460:intron | 25.0% |
| ! | TTAAAAGATGTTCAACACAA+GGG | + | chr1_3:21443606-21443625 | None:intergenic | 25.0% |
| ! | TTGCACTTCTTACATATAAA+TGG | + | chr1_3:21443734-21443753 | None:intergenic | 25.0% |
| !! | TTGTAATTTGTAACTTTGGT+TGG | + | chr1_3:21443988-21444007 | None:intergenic | 25.0% |
| GAAACAAAAAGCAAAGATGT+TGG | - | chr1_3:21441343-21441362 | Msa0109460:three_prime_UTR | 30.0% | |
| !!! | ATCACTCAAAGATGCTTTTT+TGG | - | chr1_3:21441433-21441452 | Msa0109460:three_prime_UTR | 30.0% |
| GATTAAGAGTAACAGAAGAA+GGG | + | chr1_3:21441481-21441500 | None:intergenic | 30.0% | |
| AGATTAAGAGTAACAGAAGA+AGG | + | chr1_3:21441482-21441501 | None:intergenic | 30.0% | |
| ATTGATACCTTGGAAGTAAA+GGG | + | chr1_3:21441547-21441566 | None:intergenic | 30.0% | |
| TGAGAAATTGATTGATACCT+TGG | + | chr1_3:21441557-21441576 | None:intergenic | 30.0% | |
| !! | AAAGTTGGAACCTTTTGTTT+TGG | - | chr1_3:21441629-21441648 | Msa0109460:CDS | 30.0% |
| AAATGTTCAAGGGATCAAAA+GGG | + | chr1_3:21441678-21441697 | None:intergenic | 30.0% | |
| !! | TTGATTTTGGGAAGATTTAG+AGG | - | chr1_3:21441858-21441877 | Msa0109460:intron | 30.0% |
| AGATTTAGAGGTTAATGAGT+TGG | - | chr1_3:21441870-21441889 | Msa0109460:intron | 30.0% | |
| !!! | GTTTTGGAATTCATACTTGT+TGG | - | chr1_3:21441995-21442014 | Msa0109460:intron | 30.0% |
| ! | TTTGGAATTCATACTTGTTG+GGG | - | chr1_3:21441997-21442016 | Msa0109460:intron | 30.0% |
| GAAATTATATTCATGGTGAG+TGG | - | chr1_3:21442110-21442129 | Msa0109460:intron | 30.0% | |
| GACAAAGCTTTCTTAATAGT+AGG | + | chr1_3:21442503-21442522 | None:intergenic | 30.0% | |
| ! | CATTTTCCTTGTTCTTTGTT+TGG | - | chr1_3:21442522-21442541 | Msa0109460:intron | 30.0% |
| TATATCCCAAACAAAGAACA+AGG | + | chr1_3:21442531-21442550 | None:intergenic | 30.0% | |
| !! | GTTCTCCTTTAAGATTGATT+TGG | - | chr1_3:21442666-21442685 | Msa0109460:CDS | 30.0% |
| TAAAAAAAATATGAAGGGCG+TGG | + | chr1_3:21442740-21442759 | None:intergenic | 30.0% | |
| !! | CAGCTATAAGTTGTTTTCAT+CGG | + | chr1_3:21442886-21442905 | None:intergenic | 30.0% |
| GATTAGCAACATTATCAATG+TGG | + | chr1_3:21443119-21443138 | None:intergenic | 30.0% | |
| ATTGAACAAAACAGCTAATG+AGG | - | chr1_3:21443155-21443174 | Msa0109460:intron | 30.0% | |
| AGATAAATGCAAATTTGCCT+TGG | + | chr1_3:21443257-21443276 | None:intergenic | 30.0% | |
| AATTATCGGAGAATATGACA+TGG | + | chr1_3:21443348-21443367 | None:intergenic | 30.0% | |
| AAGAAATACGATAGTATGCA+AGG | + | chr1_3:21443382-21443401 | None:intergenic | 30.0% | |
| !! | ATTTCTTTTCAGGATGTTGA+TGG | - | chr1_3:21443395-21443414 | Msa0109460:intron | 30.0% |
| !! | TTTCTTTTCAGGATGTTGAT+GGG | - | chr1_3:21443396-21443415 | Msa0109460:intron | 30.0% |
| AAATCATGTGACTACCTTTA+GGG | + | chr1_3:21443523-21443542 | None:intergenic | 30.0% | |
| TAAATCATGTGACTACCTTT+AGG | + | chr1_3:21443524-21443543 | None:intergenic | 30.0% | |
| CTTAAAAGATGTTCAACACA+AGG | + | chr1_3:21443607-21443626 | None:intergenic | 30.0% | |
| TACCAGAATGATGTAAGATT+AGG | - | chr1_3:21443661-21443680 | Msa0109460:intron | 30.0% | |
| ACCAGAATGATGTAAGATTA+GGG | - | chr1_3:21443662-21443681 | Msa0109460:intron | 30.0% | |
| ATTAGGGATAACAAGTTTGA+TGG | - | chr1_3:21443678-21443697 | Msa0109460:intron | 30.0% | |
| ATGGCTAGAAATGGTAAATA+TGG | - | chr1_3:21443697-21443716 | Msa0109460:intron | 30.0% | |
| AAATTGGCCAATTCTCAATT+CGG | + | chr1_3:21443799-21443818 | None:intergenic | 30.0% | |
| ! | TTTTTCATCAGTTCAATCGT+CGG | - | chr1_3:21443893-21443912 | Msa0109460:intron | 30.0% |
| !!! | TTTTCAGGTAATGGTTCATT+CGG | + | chr1_3:21443924-21443943 | None:intergenic | 30.0% |
| TTGTAAAGACGTGTACAATA+TGG | + | chr1_3:21444105-21444124 | None:intergenic | 30.0% | |
| GAACTATCAATTCTTGGTAT+TGG | + | chr1_3:21444253-21444272 | None:intergenic | 30.0% | |
| ! | ATACCAAGAATTGATAGTTC+TGG | - | chr1_3:21444253-21444272 | Msa0109460:intron | 30.0% |
| ATAATATCAACTTTCGCTCT+TGG | - | chr1_3:21444491-21444510 | Msa0109460:CDS | 30.0% | |
| ATCACATTAACAGTTTATGC+AGG | + | chr1_3:21444589-21444608 | None:intergenic | 30.0% | |
| TGCATAAACTGTTAATGTGA+TGG | - | chr1_3:21444588-21444607 | Msa0109460:five_prime_UTR | 30.0% | |
| GATGAAACTGAGTTTGATTC+TGG | + | chr1_3:21441416-21441435 | None:intergenic | 35.0% | |
| AAAACAACCCTTTACTTCCA+AGG | - | chr1_3:21441537-21441556 | Msa0109460:CDS | 35.0% | |
| GATTGATACCTTGGAAGTAA+AGG | + | chr1_3:21441548-21441567 | None:intergenic | 35.0% | |
| CAAATGTTCAAGGGATCAAA+AGG | + | chr1_3:21441679-21441698 | None:intergenic | 35.0% | |
| ! | CTTTTGATCCCTTGAACATT+TGG | - | chr1_3:21441677-21441696 | Msa0109460:CDS | 35.0% |
| ACCATTCACCAAATGTTCAA+GGG | + | chr1_3:21441688-21441707 | None:intergenic | 35.0% | |
| TGTAGGATGATGATCATAGT+TGG | - | chr1_3:21441741-21441760 | Msa0109460:intron | 35.0% | |
| GATGATCATAGTTGGAATGT+TGG | - | chr1_3:21441749-21441768 | Msa0109460:intron | 35.0% | |
| CATCTTTGTCTAAACCTATG+AGG | - | chr1_3:21442192-21442211 | Msa0109460:intron | 35.0% | |
| CTTATTTCCATAAACTCTCG+AGG | - | chr1_3:21442856-21442875 | Msa0109460:intron | 35.0% | |
| ACTGAGCTGTTTATCTAAAC+AGG | - | chr1_3:21443003-21443022 | Msa0109460:intron | 35.0% | |
| CTGAGCTGTTTATCTAAACA+GGG | - | chr1_3:21443004-21443023 | Msa0109460:intron | 35.0% | |
| GGAAGACAAAGATATATCCT+AGG | + | chr1_3:21443327-21443346 | None:intergenic | 35.0% | |
| AGGTCTGAGCAGAAAATTAT+CGG | + | chr1_3:21443362-21443381 | None:intergenic | 35.0% | |
| ACAGCTCTTACTAACAATCT+CGG | + | chr1_3:21443480-21443499 | None:intergenic | 35.0% | |
| TCCCTAATCTTACATCATTC+TGG | + | chr1_3:21443666-21443685 | None:intergenic | 35.0% | |
| ! | ACAAGTTTGATGGCTAGAAA+TGG | - | chr1_3:21443688-21443707 | Msa0109460:intron | 35.0% |
| AACTGAACCGAATTGAGAAT+TGG | - | chr1_3:21443789-21443808 | Msa0109460:intron | 35.0% | |
| ACAACAGAGATCAAACTAAC+CGG | + | chr1_3:21443823-21443842 | None:intergenic | 35.0% | |
| TTAAAAACTGGAGATCGAAG+AGG | + | chr1_3:21443952-21443971 | None:intergenic | 35.0% | |
| TATGGAAGAAACATTGATCG+TGG | + | chr1_3:21444087-21444106 | None:intergenic | 35.0% | |
| TCACCAGAACTATCAATTCT+TGG | + | chr1_3:21444259-21444278 | None:intergenic | 35.0% | |
| ! | GATTCTAAGAAGGAAACAAC+TGG | - | chr1_3:21444310-21444329 | Msa0109460:intron | 35.0% |
| CATTTGTTCCTGTTACAATC+TGG | - | chr1_3:21444415-21444434 | Msa0109460:CDS | 35.0% | |
| ACATTGAGATGATACTCTCT+TGG | - | chr1_3:21444455-21444474 | Msa0109460:CDS | 35.0% | |
| !! | CTGTTAATGTGATGGATACT+TGG | - | chr1_3:21444596-21444615 | Msa0109460:five_prime_UTR | 35.0% |
| ! | TCCCTTGAACATTTGGTGAA+TGG | - | chr1_3:21441684-21441703 | Msa0109460:CDS | 40.0% |
| CACCATTCACCAAATGTTCA+AGG | + | chr1_3:21441689-21441708 | None:intergenic | 40.0% | |
| TCTATGTAGTCGACATCACT+TGG | - | chr1_3:21441935-21441954 | Msa0109460:intron | 40.0% | |
| TGTCAATGTGATCACCTCAT+AGG | + | chr1_3:21442209-21442228 | None:intergenic | 40.0% | |
| TGTCTGACACCAACATAAGT+TGG | - | chr1_3:21442312-21442331 | Msa0109460:intron | 40.0% | |
| ! | TTTTCTTTTCCCATGTTCGC+AGG | - | chr1_3:21443052-21443071 | Msa0109460:intron | 40.0% |
| GACATCTTCTGCTTGTTTCA+CGG | - | chr1_3:21443093-21443112 | Msa0109460:intron | 40.0% | |
| CAAGTTGTGAGAGATTTCCA+AGG | - | chr1_3:21443237-21443256 | Msa0109460:intron | 40.0% | |
| TTGCTGCTGTAAGTAATCCT+AGG | - | chr1_3:21443307-21443326 | Msa0109460:intron | 40.0% | |
| GCATCAATTCCCCAGAAAAA+GGG | + | chr1_3:21443428-21443447 | None:intergenic | 40.0% | |
| AGCATCAATTCCCCAGAAAA+AGG | + | chr1_3:21443429-21443448 | None:intergenic | 40.0% | |
| GAGATTGTTAGTAAGAGCTG+TGG | - | chr1_3:21443479-21443498 | Msa0109460:intron | 40.0% | |
| ! | TCTTTTGCACCATTCCCTAA+AGG | - | chr1_3:21443506-21443525 | Msa0109460:intron | 40.0% |
| ! | ATGTGACTACCTTTAGGGAA+TGG | + | chr1_3:21443518-21443537 | None:intergenic | 40.0% |
| GATGTTCAACACAAGGGATT+AGG | + | chr1_3:21443600-21443619 | None:intergenic | 40.0% | |
| TTGAGAATTGGCCAATTTGC+CGG | - | chr1_3:21443801-21443820 | Msa0109460:intron | 40.0% | |
| GATCAAACTAACCGGCAAAT+TGG | + | chr1_3:21443815-21443834 | None:intergenic | 40.0% | |
| GACAATCGATAGTTCGATAC+AGG | + | chr1_3:21444065-21444084 | None:intergenic | 40.0% | |
| GGATGCTTCTTTACAACATC+TGG | - | chr1_3:21444187-21444206 | Msa0109460:intron | 40.0% | |
| TGCTTCTTTACAACATCTGG+AGG | - | chr1_3:21444190-21444209 | Msa0109460:intron | 40.0% | |
| TTACAACATCTGGAGGTTTG+AGG | - | chr1_3:21444197-21444216 | Msa0109460:intron | 40.0% | |
| !! | GATAGTTCTGGTGAAATGTG+TGG | - | chr1_3:21444265-21444284 | Msa0109460:intron | 40.0% |
| GTGTGGTTCAACTTTCAAAG+TGG | - | chr1_3:21444282-21444301 | Msa0109460:intron | 40.0% | |
| !! | AGTGGATGCTGATTCTAAGA+AGG | - | chr1_3:21444300-21444319 | Msa0109460:intron | 40.0% |
| ATCAACTTTCGCTCTTGGAT+CGG | - | chr1_3:21444496-21444515 | Msa0109460:CDS | 40.0% | |
| ATCTGTTGCGAAAAGTCCAG+AGG | - | chr1_3:21441379-21441398 | Msa0109460:three_prime_UTR | 45.0% | |
| TCTGTTGCGAAAAGTCCAGA+GGG | - | chr1_3:21441380-21441399 | Msa0109460:three_prime_UTR | 45.0% | |
| ATGTAGTCGACATCACTTGG+TGG | - | chr1_3:21441938-21441957 | Msa0109460:intron | 45.0% | |
| TGTAGTCGACATCACTTGGT+GGG | - | chr1_3:21441939-21441958 | Msa0109460:intron | 45.0% | |
| GTCTCGTGTCCAACTTATGT+TGG | + | chr1_3:21442324-21442343 | None:intergenic | 45.0% | |
| AGACTGTTCGAGAGAGGTTA+TGG | - | chr1_3:21442798-21442817 | Msa0109460:CDS | 45.0% | |
| TGAGGTGACCATTGTCATAG+AGG | - | chr1_3:21443173-21443192 | Msa0109460:intron | 45.0% | |
| CCTGTAAGCCTCTATGACAA+TGG | + | chr1_3:21443184-21443203 | None:intergenic | 45.0% | |
| CCATTGTCATAGAGGCTTAC+AGG | - | chr1_3:21443181-21443200 | Msa0109460:intron | 45.0% | |
| ACAACTTGATCCGCAGGATA+GGG | + | chr1_3:21443225-21443244 | None:intergenic | 45.0% | |
| ACTTACAGCAGCAACAAACG+CGG | + | chr1_3:21443301-21443320 | None:intergenic | 45.0% | |
| !!! | ATGGGAGTGTTCCCTTTTTC+TGG | - | chr1_3:21443414-21443433 | Msa0109460:intron | 45.0% |
| !!! | TGGGAGTGTTCCCTTTTTCT+GGG | - | chr1_3:21443415-21443434 | Msa0109460:intron | 45.0% |
| !!! | GAGGTGAGGTTTTCAGGTAA+TGG | + | chr1_3:21443933-21443952 | None:intergenic | 45.0% |
| ! | ATCGAAGAGGTGAGGTTTTC+AGG | + | chr1_3:21443939-21443958 | None:intergenic | 45.0% |
| GATAGTTCGATACAGGCACA+AGG | + | chr1_3:21444058-21444077 | None:intergenic | 45.0% | |
| ! | ATTGGCTTCAACTCGTGAAG+CGG | + | chr1_3:21444235-21444254 | None:intergenic | 45.0% |
| TTAGCAGCACTACCAACTCT+TGG | + | chr1_3:21444340-21444359 | None:intergenic | 45.0% | |
| GTTCCTGTTACAATCTGGTG+AGG | - | chr1_3:21444420-21444439 | Msa0109460:CDS | 45.0% | |
| TAGCCTCACCAGATTGTAAC+AGG | + | chr1_3:21444426-21444445 | None:intergenic | 45.0% | |
| !!! | TTTTTTTATTTTTTTTTATC+TGG | - | chr1_3:21441589-21441608 | Msa0109460:CDS | 5.0% |
| !!! | TTTTTTATTTTTTTTTATCT+GGG | - | chr1_3:21441590-21441609 | Msa0109460:CDS | 5.0% |
| TCTGGACTCTGTAAACCCTC+TGG | + | chr1_3:21441398-21441417 | None:intergenic | 50.0% | |
| ! | CGACATCACTTGGTGGGATA+AGG | - | chr1_3:21441945-21441964 | Msa0109460:intron | 50.0% |
| ! | TCACTTGGTGGGATAAGGCT+TGG | - | chr1_3:21441950-21441969 | Msa0109460:intron | 50.0% |
| CATGTGAGACTGTTCGAGAG+AGG | - | chr1_3:21442792-21442811 | Msa0109460:CDS | 50.0% | |
| CGGCTATCCTCGAGAGTTTA+TGG | + | chr1_3:21442866-21442885 | None:intergenic | 50.0% | |
| ! | TACAGGACTCTGAGAGATCG+TGG | - | chr1_3:21443198-21443217 | Msa0109460:intron | 50.0% |
| CACAACTTGATCCGCAGGAT+AGG | + | chr1_3:21443226-21443245 | None:intergenic | 50.0% | |
| TCTCTCACAACTTGATCCGC+AGG | + | chr1_3:21443231-21443250 | None:intergenic | 50.0% | |
| !!! | GGGAGTGTTCCCTTTTTCTG+GGG | - | chr1_3:21443416-21443435 | Msa0109460:intron | 50.0% |
| ATCTCTGTTGTACCGCAGTC+TGG | - | chr1_3:21443832-21443851 | Msa0109460:intron | 50.0% | |
| AACTGGAGATCGAAGAGGTG+AGG | + | chr1_3:21443947-21443966 | None:intergenic | 50.0% | |
| ACAACTGGCATGCCAAGAGT+TGG | - | chr1_3:21444325-21444344 | Msa0109460:intron | 50.0% | |
| !! | GAGTTGGTAGTGCTGCTAAC+TGG | - | chr1_3:21444341-21444360 | Msa0109460:CDS | 50.0% |
| CGCAAACAGCCTGCGAACAT+GGG | + | chr1_3:21443064-21443083 | None:intergenic | 55.0% | |
| CCATGTTCGCAGGCTGTTTG+CGG | - | chr1_3:21443062-21443081 | Msa0109460:intron | 55.0% | |
| AGATCGTGGTCCCTATCCTG+CGG | - | chr1_3:21443212-21443231 | Msa0109460:intron | 55.0% | |
| CCGCAAACAGCCTGCGAACA+TGG | + | chr1_3:21443065-21443084 | None:intergenic | 60.0% | |
| TCGCAGGCTGTTTGCGGTTG+TGG | - | chr1_3:21443068-21443087 | Msa0109460:intron | 60.0% | |
| ACCGCAGTCTGGTTGTGCTG+CGG | - | chr1_3:21443843-21443862 | Msa0109460:intron | 60.0% | |
| ACCGCAGCACAACCAGACTG+CGG | + | chr1_3:21443847-21443866 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 21441265 | 21444630 | 21441265 | ID=Msa0109460;Name=Msa0109460 |
| chr1_3 | mRNA | 21441265 | 21444630 | 21441265 | ID=Msa0109460-mRNA-1;Parent=Msa0109460;Name=Msa0109460-mRNA-1;_AED=0.05;_eAED=0.05;_QI=94|1|1|1|1|1|4|252|250 |
| chr1_3 | exon | 21441265 | 21441707 | 21441265 | ID=Msa0109460-mRNA-1:exon:7715;Parent=Msa0109460-mRNA-1 |
| chr1_3 | exon | 21442368 | 21442488 | 21442368 | ID=Msa0109460-mRNA-1:exon:7714;Parent=Msa0109460-mRNA-1 |
| chr1_3 | exon | 21442581 | 21442821 | 21442581 | ID=Msa0109460-mRNA-1:exon:7713;Parent=Msa0109460-mRNA-1 |
| chr1_3 | exon | 21444337 | 21444630 | 21444337 | ID=Msa0109460-mRNA-1:exon:7712;Parent=Msa0109460-mRNA-1 |
| chr1_3 | five_prime_UTR | 21444537 | 21444630 | 21444537 | ID=Msa0109460-mRNA-1:five_prime_utr;Parent=Msa0109460-mRNA-1 |
| chr1_3 | CDS | 21444337 | 21444536 | 21444337 | ID=Msa0109460-mRNA-1:cds;Parent=Msa0109460-mRNA-1 |
| chr1_3 | CDS | 21442581 | 21442821 | 21442581 | ID=Msa0109460-mRNA-1:cds;Parent=Msa0109460-mRNA-1 |
| chr1_3 | CDS | 21442368 | 21442488 | 21442368 | ID=Msa0109460-mRNA-1:cds;Parent=Msa0109460-mRNA-1 |
| chr1_3 | CDS | 21441517 | 21441707 | 21441517 | ID=Msa0109460-mRNA-1:cds;Parent=Msa0109460-mRNA-1 |
| chr1_3 | three_prime_UTR | 21441265 | 21441516 | 21441265 | ID=Msa0109460-mRNA-1:three_prime_utr;Parent=Msa0109460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
