Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064580 | XP_013467030.1 | 92.105 | 190 | 14 | 1 | 19 | 207 | 1 | 190 | 1.06e-118 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064580 | A0A072VSF9 | 92.105 | 190 | 14 | 1 | 19 | 207 | 1 | 190 | 5.04e-119 | 348 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064580 | Msa0155640 | 0.874824 | 4.993312e-68 | -8.615850e-47 |
| Msa0064580 | Msa0306570 | 0.932960 | 3.875939e-95 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064580 | MtrunA17_Chr1g0166401 | 92.105 | 190 | 14 | 1 | 19 | 207 | 1 | 190 | 9.70e-123 | 348 |
| Msa0064580 | MtrunA17_Chr1g0190821 | 50.000 | 172 | 76 | 5 | 23 | 191 | 8 | 172 | 6.46e-53 | 171 |
| Msa0064580 | MtrunA17_Chr7g0273981 | 36.264 | 182 | 106 | 4 | 19 | 190 | 1 | 182 | 6.91e-31 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064580 | AT4G14746.1 | 53.459 | 159 | 67 | 3 | 29 | 185 | 13 | 166 | 8.26e-56 | 179 |
| Msa0064580 | AT4G14746.2 | 52.427 | 103 | 43 | 2 | 29 | 130 | 13 | 110 | 6.58e-30 | 110 |
Find 75 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCTGGTCTTGGTGATTA+TGG | 0.232638 | 1_2:-25860194 | Msa0064580:CDS |
| CCTTTGCTTTCTCCTATCTT+TGG | 0.233883 | 1_2:-25863690 | Msa0064580:intron |
| TGGAGCAGGGGCTGGAGCTT+TGG | 0.238264 | 1_2:+25861630 | None:intergenic |
| CTAATCTAATCAAATTAAAA+AGG | 0.285577 | 1_2:+25859903 | None:intergenic |
| AAATGTAACATAAATTTGTT+AGG | 0.328125 | 1_2:+25863875 | None:intergenic |
| TTACTGTCCTCATTTAATAC+TGG | 0.329549 | 1_2:+25860974 | None:intergenic |
| TTTGGGACTGGTGATAATAT+AGG | 0.334543 | 1_2:-25860099 | Msa0064580:exon |
| AAGGTCCCTTTGGCTGGTCT+TGG | 0.360445 | 1_2:-25860203 | Msa0064580:CDS |
| TGGAAGAAAGCTCTTGATTC+CGG | 0.360879 | 1_2:-25863369 | Msa0064580:CDS |
| GGCATGGGCTGCTCTGACCT+TGG | 0.369624 | 1_2:-25861034 | Msa0064580:CDS |
| TTGGGACTGGTGATAATATA+GGG | 0.374283 | 1_2:-25860098 | Msa0064580:exon |
| CATCACCGTTGATTTCTGTT+TGG | 0.375158 | 1_2:+25859829 | None:intergenic |
| TCAACTATCTCAAATTATAA+TGG | 0.378090 | 1_2:-25859769 | Msa0064580:three_prime_UTR |
| CTAGTACAAAAGAGATATTA+TGG | 0.385797 | 1_2:-25860040 | Msa0064580:three_prime_UTR |
| GGGAAAGTACTATTCATAGA+AGG | 0.391058 | 1_2:+25863417 | None:intergenic |
| TTCTACAAGGAAGGTCCCTT+TGG | 0.401052 | 1_2:-25860213 | Msa0064580:CDS |
| AAGAGTTACAAACCAAAGAT+AGG | 0.415050 | 1_2:+25863678 | None:intergenic |
| AGTTGCACTAGGACAGTATC+TGG | 0.416182 | 1_2:-25860156 | Msa0064580:CDS |
| ACCATCAAATATTGATGCAT+TGG | 0.419728 | 1_2:+25861591 | None:intergenic |
| CTCTTGATTCCGGTGATGAT+GGG | 0.428084 | 1_2:-25863359 | Msa0064580:CDS |
| GCTCTTGATTCCGGTGATGA+TGG | 0.432005 | 1_2:-25863360 | Msa0064580:CDS |
| ACAAGGAAGGTCCCTTTGGC+TGG | 0.436384 | 1_2:-25860209 | Msa0064580:CDS |
| TCCAATGCATCAATATTTGA+TGG | 0.436463 | 1_2:-25861592 | Msa0064580:intron |
| ATTCTACTTGACATTGATGA+TGG | 0.449108 | 1_2:-25859969 | Msa0064580:three_prime_UTR |
| TTTGAATTTGAAGGTTCCAT+TGG | 0.449421 | 1_2:-25861055 | Msa0064580:intron |
| TGATCACACTCACATTCAAA+AGG | 0.452842 | 1_2:+25863396 | None:intergenic |
| ATATAAATAAATGACTAGTT+AGG | 0.468136 | 1_2:+25863843 | None:intergenic |
| AGGAAAATGCTAAGGAGTGT+TGG | 0.471318 | 1_2:+25859923 | None:intergenic |
| TTTGAATGTGAGTGTGATCA+TGG | 0.477887 | 1_2:-25863393 | Msa0064580:CDS |
| TAGGAGAAAGCAAAGGAGAA+AGG | 0.478068 | 1_2:+25863697 | None:intergenic |
| CATTGGGTTGACTGTGGAGG+TGG | 0.494026 | 1_2:-25861474 | Msa0064580:CDS |
| ATTTGAAGGTTCCATTGGCA+TGG | 0.505978 | 1_2:-25861050 | Msa0064580:intron |
| GTTGATTTCTGTTTGGACTT+CGG | 0.520230 | 1_2:+25859836 | None:intergenic |
| CTGTCCTCATTTAATACTGG+TGG | 0.531289 | 1_2:+25860977 | None:intergenic |
| TCCTCATTTAATACTGGTGG+TGG | 0.537440 | 1_2:+25860980 | None:intergenic |
| GGTCTTGGTGATTATGGTGA+TGG | 0.541288 | 1_2:-25860188 | Msa0064580:CDS |
| AATGTGAGTGTGATCATGGT+TGG | 0.543163 | 1_2:-25863389 | Msa0064580:CDS |
| AGATGATGTATGCAAAGAAG+TGG | 0.544147 | 1_2:-25863463 | Msa0064580:CDS |
| AGTTTGACATTGATATTCCA+AGG | 0.549867 | 1_2:+25861017 | None:intergenic |
| TTTGAAGGTTCCATTGGCAT+GGG | 0.552267 | 1_2:-25861049 | Msa0064580:intron |
| GATCACACTCACATTCAAAA+GGG | 0.561000 | 1_2:+25863397 | None:intergenic |
| GGACAGTAAGAATGAAGGTA+AGG | 0.562725 | 1_2:-25860960 | Msa0064580:CDS |
| TGCCATTGGGTTGACTGTGG+AGG | 0.564067 | 1_2:-25861477 | Msa0064580:CDS |
| AAGGAAAGGTAGTGACATTG+AGG | 0.565068 | 1_2:+25861388 | None:intergenic |
| GTCAGAGCAGCCCATGCCAA+TGG | 0.565591 | 1_2:+25861039 | None:intergenic |
| AATGAGGACAGTAAGAATGA+AGG | 0.572553 | 1_2:-25860965 | Msa0064580:CDS |
| CTGTCTCAATTCTACAAGGA+AGG | 0.575645 | 1_2:-25860222 | Msa0064580:CDS |
| TCAGCTGTCTCAATTCTACA+AGG | 0.577319 | 1_2:-25860226 | Msa0064580:intron |
| TCTTGATTCCGGTGATGATG+GGG | 0.578509 | 1_2:-25863358 | Msa0064580:CDS |
| ATCTTACATTCTCTGAAGCA+AGG | 0.581134 | 1_2:+25861369 | None:intergenic |
| ATTTCTGTTTGGACTTCGGA+CGG | 0.584237 | 1_2:+25859840 | None:intergenic |
| TGAGCCACGCATTTAGAGCA+TGG | 0.586849 | 1_2:+25859877 | None:intergenic |
| GCTTGCCATTGGGTTGACTG+TGG | 0.588618 | 1_2:-25861480 | Msa0064580:CDS |
| TACTTGACATTGATGATGGA+GGG | 0.599003 | 1_2:-25859965 | Msa0064580:three_prime_UTR |
| AATTAACAGAATTCAGATGT+GGG | 0.601105 | 1_2:+25863808 | None:intergenic |
| CTTGATTCCGGTGATGATGG+GGG | 0.605222 | 1_2:-25863357 | Msa0064580:CDS |
| CTACTTGACATTGATGATGG+AGG | 0.608480 | 1_2:-25859966 | Msa0064580:three_prime_UTR |
| TAATTAACAGAATTCAGATG+TGG | 0.611816 | 1_2:+25863807 | None:intergenic |
| AAAGAAGTGGAATGTGGGAA+AGG | 0.615099 | 1_2:-25863450 | Msa0064580:CDS |
| AATCACCAAGACCAGCCAAA+GGG | 0.616260 | 1_2:+25860198 | None:intergenic |
| GCACTAGGACAGTATCTGGA+TGG | 0.616572 | 1_2:-25860152 | Msa0064580:CDS |
| TATGCAAAGAAGTGGAATGT+GGG | 0.618938 | 1_2:-25863455 | Msa0064580:CDS |
| TATCACCAGTCCCAAACCAA+AGG | 0.623066 | 1_2:+25860106 | None:intergenic |
| ACATTCTCTGAAGCAAGGAA+AGG | 0.624340 | 1_2:+25861374 | None:intergenic |
| TAATCACCAAGACCAGCCAA+AGG | 0.642532 | 1_2:+25860197 | None:intergenic |
| TCCACCACCAGTATTAAATG+AGG | 0.645408 | 1_2:-25860981 | Msa0064580:CDS |
| TTACAATTAGGAATGATGCA+AGG | 0.645535 | 1_2:+25863321 | None:intergenic |
| GTATGCAAAGAAGTGGAATG+TGG | 0.652199 | 1_2:-25863456 | Msa0064580:CDS |
| ATAGTGAATGAAGAAAAGCT+AGG | 0.654634 | 1_2:+25860000 | None:intergenic |
| CACCTCCACAGTCAACCCAA+TGG | 0.654789 | 1_2:+25861475 | None:intergenic |
| GATTCCATGCTCTAAATGCG+TGG | 0.656761 | 1_2:-25859881 | Msa0064580:three_prime_UTR |
| CCAAAGATAGGAGAAAGCAA+AGG | 0.659740 | 1_2:+25863690 | None:intergenic |
| GGCAAAGATACAGTTGCACT+AGG | 0.659862 | 1_2:-25860167 | Msa0064580:CDS |
| GAAGTCCAAACAGAAATCAA+CGG | 0.674086 | 1_2:-25859834 | Msa0064580:three_prime_UTR |
| ATTAACAGAATTCAGATGTG+GGG | 0.687788 | 1_2:+25863809 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTGTTAATATAGTATA+TGG | - | chr1_2:25860126-25860145 | Msa0064580:CDS | 10.0% |
| !! | TATCTTATATAAAAATAGTT+TGG | - | chr1_2:25860967-25860986 | Msa0064580:CDS | 10.0% |
| !! | TTTATCTTAAATTTGTAATA+AGG | - | chr1_2:25861445-25861464 | Msa0064580:CDS | 10.0% |
| !! | CTAAAAATATTTAATATTCT+TGG | - | chr1_2:25861960-25861979 | Msa0064580:intron | 10.0% |
| !!! | TGATATCATTTTTATTTTTT+AGG | - | chr1_2:25861992-25862011 | Msa0064580:intron | 10.0% |
| !!! | AAATTCTAAAATATTAAGAA+AGG | - | chr1_2:25862845-25862864 | Msa0064580:intron | 10.0% |
| !!! | AAATGTAACATAAATTTGTT+AGG | + | chr1_2:25859793-25859812 | None:intergenic | 15.0% |
| !!! | ATATAAATAAATGACTAGTT+AGG | + | chr1_2:25859825-25859844 | None:intergenic | 15.0% |
| !!! | TTACTTTCTAAAGTTAAAAA+TGG | - | chr1_2:25859878-25859897 | Msa0064580:three_prime_UTR | 15.0% |
| !!! | TAAATAAAGATTTTTATGTG+TGG | - | chr1_2:25860738-25860757 | Msa0064580:intron | 15.0% |
| !!! | TTTTTATTTTTTAGGTACAT+TGG | - | chr1_2:25862000-25862019 | Msa0064580:intron | 15.0% |
| !!! | AAATTTTACATTTTATGATC+TGG | + | chr1_2:25862384-25862403 | None:intergenic | 15.0% |
| !!! | TTATTTAATTTCTACTACTT+TGG | + | chr1_2:25862576-25862595 | None:intergenic | 15.0% |
| !!! | GATTTTAAATTTGAATTTGA+AGG | - | chr1_2:25862601-25862620 | Msa0064580:intron | 15.0% |
| !! | AATTTAAAAACACATATACA+AGG | + | chr1_2:25862830-25862849 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTCAAATTATCAT+CGG | + | chr1_2:25863289-25863308 | None:intergenic | 15.0% |
| !! | CTAATCTAATCAAATTAAAA+AGG | + | chr1_2:25863765-25863784 | None:intergenic | 15.0% |
| !!! | TTTTAATGTAAAGGAATAGT+AGG | + | chr1_2:25859769-25859788 | None:intergenic | 20.0% |
| !!! | TTGTTAGGTTTTTAATGTAA+AGG | + | chr1_2:25859778-25859797 | None:intergenic | 20.0% |
| !! | TTCTGTTTACGTATAAATTA+TGG | - | chr1_2:25860429-25860448 | Msa0064580:intron | 20.0% |
| !!! | GTAATTTTCATAAGATATCA+TGG | + | chr1_2:25860587-25860606 | None:intergenic | 20.0% |
| !!! | AATAAGTTGAAAACAGATTA+TGG | + | chr1_2:25860909-25860928 | None:intergenic | 20.0% |
| !!! | CTTATTTCTATAATATCTCT+AGG | - | chr1_2:25860923-25860942 | Msa0064580:intron | 20.0% |
| !!! | TTTGGCTTTATTTTTTTTTG+AGG | - | chr1_2:25860985-25861004 | Msa0064580:CDS | 20.0% |
| !!! | TTTTTTTTTGAGGAATAGTT+TGG | - | chr1_2:25860995-25861014 | Msa0064580:CDS | 20.0% |
| !!! | TTTGTTATTAGTTGATTTCT+TGG | + | chr1_2:25861290-25861309 | None:intergenic | 20.0% |
| !! | AAGAAATCAACTAATAACAA+AGG | - | chr1_2:25861289-25861308 | Msa0064580:intron | 20.0% |
| !! | TAACTCAAAGATATAACTAT+AGG | - | chr1_2:25862096-25862115 | Msa0064580:intron | 20.0% |
| !! | AACTCAAAGATATAACTATA+GGG | - | chr1_2:25862097-25862116 | Msa0064580:intron | 20.0% |
| !! | CAGTAATTCAATTCATAATT+AGG | - | chr1_2:25862755-25862774 | Msa0064580:intron | 20.0% |
| !!! | TTTTTTTTAATTCTTTTGGC+AGG | - | chr1_2:25862934-25862953 | Msa0064580:intron | 20.0% |
| !!! | TTTTTTCGACAAGTTATTTT+TGG | + | chr1_2:25863208-25863227 | None:intergenic | 20.0% |
| !! | TAAACACAAAAAAATGACAT+GGG | + | chr1_2:25863419-25863438 | None:intergenic | 20.0% |
| !! | ATAAACACAAAAAAATGACA+TGG | + | chr1_2:25863420-25863439 | None:intergenic | 20.0% |
| !! | AATTAAAAAGGAAAATGCTA+AGG | + | chr1_2:25863753-25863772 | None:intergenic | 20.0% |
| !! | TCAACTATCTCAAATTATAA+TGG | - | chr1_2:25863896-25863915 | Msa0064580:five_prime_UTR | 20.0% |
| ! | AATTAACAGAATTCAGATGT+GGG | + | chr1_2:25859860-25859879 | None:intergenic | 25.0% |
| ! | TAATTAACAGAATTCAGATG+TGG | + | chr1_2:25859861-25859880 | None:intergenic | 25.0% |
| ! | ATCCATTAAAAGAGATAAGA+GGG | + | chr1_2:25860024-25860043 | None:intergenic | 25.0% |
| ! | AATCCATTAAAAGAGATAAG+AGG | + | chr1_2:25860025-25860044 | None:intergenic | 25.0% |
| !! | GTATAAATTATGGACTTGTT+TGG | - | chr1_2:25860439-25860458 | Msa0064580:intron | 25.0% |
| ! | AATAAGCTAAACACACTTTA+GGG | + | chr1_2:25860552-25860571 | None:intergenic | 25.0% |
| ! | AAATAAGCTAAACACACTTT+AGG | + | chr1_2:25860553-25860572 | None:intergenic | 25.0% |
| !!! | AATATCTCTAGGATAACTTA+TGG | - | chr1_2:25860934-25860953 | Msa0064580:intron | 25.0% |
| ! | AAATCAACTAATAACAAAGG+AGG | - | chr1_2:25861292-25861311 | Msa0064580:intron | 25.0% |
| ! | AGAATTAAGGAAGAAAAGTT+TGG | + | chr1_2:25861329-25861348 | None:intergenic | 25.0% |
| !!! | CAAGAAAATCTCTAGAATTA+AGG | + | chr1_2:25861342-25861361 | None:intergenic | 25.0% |
| !! | CAAATGCTTAATTTTCAACA+TGG | - | chr1_2:25861422-25861441 | Msa0064580:CDS | 25.0% |
| ! | GGTTTAATCACACTATAAAA+AGG | - | chr1_2:25861466-25861485 | Msa0064580:CDS | 25.0% |
| ! | TCTAACTTTATACAATTGCA+TGG | - | chr1_2:25861655-25861674 | Msa0064580:intron | 25.0% |
| !!! | ACAAAAATAGTTTTACATCG+CGG | + | chr1_2:25861848-25861867 | None:intergenic | 25.0% |
| !!! | TTGGATTTTTTTGCTTTTTC+TGG | + | chr1_2:25862058-25862077 | None:intergenic | 25.0% |
| !!! | TTTTAAGTTAAGCACCTAAT+TGG | - | chr1_2:25862424-25862443 | Msa0064580:intron | 25.0% |
| ! | ACAATGTATCAAAGTTTAAC+TGG | - | chr1_2:25862483-25862502 | Msa0064580:intron | 25.0% |
| ! | AAAATCATTAGTACTGTGAT+TGG | - | chr1_2:25862506-25862525 | Msa0064580:intron | 25.0% |
| ! | ATCCAAATTGCAATTAGATT+AGG | - | chr1_2:25862982-25863001 | Msa0064580:intron | 25.0% |
| ! | ATCCTAATCTAATTGCAATT+TGG | + | chr1_2:25862987-25863006 | None:intergenic | 25.0% |
| !! | TAGATTAGGATTGTTTTCTA+AGG | - | chr1_2:25862996-25863015 | Msa0064580:intron | 25.0% |
| !!! | CCATTTTTGTATGACTTTTA+AGG | + | chr1_2:25863115-25863134 | None:intergenic | 25.0% |
| ! | CCTTAAAAGTCATACAAAAA+TGG | - | chr1_2:25863112-25863131 | Msa0064580:intron | 25.0% |
| ! | CTAGTACAAAAGAGATATTA+TGG | - | chr1_2:25863625-25863644 | Msa0064580:intron | 25.0% |
| ATTAACAGAATTCAGATGTG+GGG | + | chr1_2:25859859-25859878 | None:intergenic | 30.0% | |
| !!! | AAGTCACTTTTAGTTGAAAG+AGG | + | chr1_2:25859948-25859967 | None:intergenic | 30.0% |
| AAGAGTTACAAACCAAAGAT+AGG | + | chr1_2:25859990-25860009 | None:intergenic | 30.0% | |
| ! | TACCCTCTTATCTCTTTTAA+TGG | - | chr1_2:25860019-25860038 | Msa0064580:three_prime_UTR | 30.0% |
| TTTCATGAAGGATCATCAAA+AGG | - | chr1_2:25860086-25860105 | Msa0064580:exon | 30.0% | |
| TTCATGAAGGATCATCAAAA+GGG | - | chr1_2:25860087-25860106 | Msa0064580:exon | 30.0% | |
| TTACAATTAGGAATGATGCA+AGG | + | chr1_2:25860347-25860366 | None:intergenic | 30.0% | |
| AGGAAGGAATTCTTACAATT+AGG | + | chr1_2:25860359-25860378 | None:intergenic | 30.0% | |
| TTTATTAGTGTCCAAGAAAG+AGG | + | chr1_2:25860379-25860398 | None:intergenic | 30.0% | |
| TCAAATCAATCAATCCAACT+AGG | - | chr1_2:25860706-25860725 | Msa0064580:intron | 30.0% | |
| TGTTGATATAGACATAGTGT+TGG | + | chr1_2:25860777-25860796 | None:intergenic | 30.0% | |
| ATATCAACAGAGTAACACTT+AGG | - | chr1_2:25860788-25860807 | Msa0064580:intron | 30.0% | |
| !! | GTGTATTTTTGCAAAGCAAA+AGG | - | chr1_2:25861174-25861193 | Msa0064580:intron | 30.0% |
| TTGAAAAGGTTCATGGTATT+TGG | - | chr1_2:25861250-25861269 | Msa0064580:intron | 30.0% | |
| ! | AGAGATTTTCTTGATATGCT+TGG | - | chr1_2:25861349-25861368 | Msa0064580:intron | 30.0% |
| ACTATAAAAAGGTCAAGTAG+AGG | - | chr1_2:25861477-25861496 | Msa0064580:CDS | 30.0% | |
| AACTTTATACAATTGCATGG+TGG | - | chr1_2:25861658-25861677 | Msa0064580:intron | 30.0% | |
| TTGGTACAACAGAAAAATAC+TGG | + | chr1_2:25861706-25861725 | None:intergenic | 30.0% | |
| CTTGATATTGCGAAAAATTG+TGG | + | chr1_2:25861817-25861836 | None:intergenic | 30.0% | |
| ! | CACAATTTTTCGCAATATCA+AGG | - | chr1_2:25861815-25861834 | Msa0064580:intron | 30.0% |
| TCCAATGCATCAATATTTGA+TGG | - | chr1_2:25862073-25862092 | Msa0064580:intron | 30.0% | |
| ACCATCAAATATTGATGCAT+TGG | + | chr1_2:25862077-25862096 | None:intergenic | 30.0% | |
| ! | AGGGATCTCAATTTTATGTT+TGG | - | chr1_2:25862116-25862135 | Msa0064580:intron | 30.0% |
| TTTGAATTTGAAGGTTCCAT+TGG | - | chr1_2:25862610-25862629 | Msa0064580:intron | 30.0% | |
| AGTTTGACATTGATATTCCA+AGG | + | chr1_2:25862651-25862670 | None:intergenic | 30.0% | |
| TTACTGTCCTCATTTAATAC+TGG | + | chr1_2:25862694-25862713 | None:intergenic | 30.0% | |
| GTAACTAAATAAACCTAGCA+AGG | - | chr1_2:25862879-25862898 | Msa0064580:intron | 30.0% | |
| ! | TAATTCTTTTGGCAGGTATA+TGG | - | chr1_2:25862941-25862960 | Msa0064580:intron | 30.0% |
| ACTATGAGTCAATATCATGT+CGG | - | chr1_2:25863323-25863342 | Msa0064580:intron | 30.0% | |
| ACATGGGAAATATATTGAGT+AGG | + | chr1_2:25863403-25863422 | None:intergenic | 30.0% | |
| !!! | AGCTTTTCATTTTTTGCCTT+TGG | - | chr1_2:25863543-25863562 | Msa0064580:intron | 30.0% |
| !!! | TTCATTTTTTGCCTTTGGTT+TGG | - | chr1_2:25863548-25863567 | Msa0064580:intron | 30.0% |
| !!! | TCATTTTTTGCCTTTGGTTT+GGG | - | chr1_2:25863549-25863568 | Msa0064580:intron | 30.0% |
| ATAGTGAATGAAGAAAAGCT+AGG | + | chr1_2:25863668-25863687 | None:intergenic | 30.0% | |
| ATTCTACTTGACATTGATGA+TGG | - | chr1_2:25863696-25863715 | Msa0064580:CDS | 30.0% | |
| AGAAGAAGAACTGCAAAAAG+AGG | + | chr1_2:25859921-25859940 | None:intergenic | 35.0% | |
| AGATGATGTATGCAAAGAAG+TGG | - | chr1_2:25860202-25860221 | Msa0064580:CDS | 35.0% | |
| TATGCAAAGAAGTGGAATGT+GGG | - | chr1_2:25860210-25860229 | Msa0064580:CDS | 35.0% | |
| !! | GGGAAAGTACTATTCATAGA+AGG | + | chr1_2:25860251-25860270 | None:intergenic | 35.0% |
| GATCACACTCACATTCAAAA+GGG | + | chr1_2:25860271-25860290 | None:intergenic | 35.0% | |
| TGATCACACTCACATTCAAA+AGG | + | chr1_2:25860272-25860291 | None:intergenic | 35.0% | |
| TTTGAATGTGAGTGTGATCA+TGG | - | chr1_2:25860272-25860291 | Msa0064580:intron | 35.0% | |
| AAGAATTCCTTCCTCTTTCT+TGG | - | chr1_2:25860365-25860384 | Msa0064580:intron | 35.0% | |
| !! | AAAGTACCGGTGAGATTATT+TGG | - | chr1_2:25860491-25860510 | Msa0064580:intron | 35.0% |
| !! | AAGTACCGGTGAGATTATTT+GGG | - | chr1_2:25860492-25860511 | Msa0064580:intron | 35.0% |
| AAGATATCATGGAGAACTTG+TGG | + | chr1_2:25860576-25860595 | None:intergenic | 35.0% | |
| CTCATAAATGCTTATGCTAG+TGG | - | chr1_2:25860677-25860696 | Msa0064580:intron | 35.0% | |
| GCTTATTTGAGCTTATCTAC+TGG | - | chr1_2:25860824-25860843 | Msa0064580:intron | 35.0% | |
| !! | TCCAACATTGATTCCTTCAA+CGG | - | chr1_2:25861079-25861098 | Msa0064580:intron | 35.0% |
| GCAAAGCAAAAGGATTTATG+TGG | - | chr1_2:25861184-25861203 | Msa0064580:intron | 35.0% | |
| TGTGTGATTGAAAAGGTTCA+TGG | - | chr1_2:25861243-25861262 | Msa0064580:intron | 35.0% | |
| TGTATGTCAGTGTGTAATTC+AGG | - | chr1_2:25861374-25861393 | Msa0064580:intron | 35.0% | |
| ! | TCCAAACTTTCACTTGCTTT+TGG | - | chr1_2:25861525-25861544 | Msa0064580:intron | 35.0% |
| TCCAAAAGCAAGTGAAAGTT+TGG | + | chr1_2:25861529-25861548 | None:intergenic | 35.0% | |
| ! | GTGGTCAAATTAGTCTGATA+TGG | + | chr1_2:25861798-25861817 | None:intergenic | 35.0% |
| !!! | TTTTTGCTTTTTCTGGAGCA+GGG | + | chr1_2:25862051-25862070 | None:intergenic | 35.0% |
| !!! | TTTTTTGCTTTTTCTGGAGC+AGG | + | chr1_2:25862052-25862071 | None:intergenic | 35.0% |
| !!! | TTTGTTTTCTAGCTTGCCAT+TGG | - | chr1_2:25862174-25862193 | Msa0064580:intron | 35.0% |
| !!! | TTGTTTTCTAGCTTGCCATT+GGG | - | chr1_2:25862175-25862194 | Msa0064580:intron | 35.0% |
| !! | ATCTTACATTCTCTGAAGCA+AGG | + | chr1_2:25862299-25862318 | None:intergenic | 35.0% |
| !!! | GACATGATTTTAACTGAGTG+AGG | + | chr1_2:25862328-25862347 | None:intergenic | 35.0% |
| CTGACGGTGTATATGAATTA+AGG | + | chr1_2:25862350-25862369 | None:intergenic | 35.0% | |
| TCTGGTGATTATTACACTGA+CGG | + | chr1_2:25862366-25862385 | None:intergenic | 35.0% | |
| TCACCAAATCACAACCAATT+AGG | + | chr1_2:25862441-25862460 | None:intergenic | 35.0% | |
| AATGAGGACAGTAAGAATGA+AGG | - | chr1_2:25862700-25862719 | Msa0064580:intron | 35.0% | |
| ! | GGTCACAACTCACAATTTTA+TGG | - | chr1_2:25862726-25862745 | Msa0064580:intron | 35.0% |
| AAGTTGTTATGTACCTTGCT+AGG | + | chr1_2:25862895-25862914 | None:intergenic | 35.0% | |
| !! | GGTTAATTTTGATGCACTGT+TGG | + | chr1_2:25863168-25863187 | None:intergenic | 35.0% |
| ! | TATATGTGTTGGTGCTTCAT+AGG | + | chr1_2:25863234-25863253 | None:intergenic | 35.0% |
| GTTATGGGTTCTATATGTGT+TGG | + | chr1_2:25863245-25863264 | None:intergenic | 35.0% | |
| AGAACCCATAACACAGATAT+TGG | - | chr1_2:25863253-25863272 | Msa0064580:intron | 35.0% | |
| ATTTCATACTAAAGACGTGC+TGG | + | chr1_2:25863358-25863377 | None:intergenic | 35.0% | |
| ! | TTTGGGACTGGTGATAATAT+AGG | - | chr1_2:25863566-25863585 | Msa0064580:intron | 35.0% |
| ! | TTGGGACTGGTGATAATATA+GGG | - | chr1_2:25863567-25863586 | Msa0064580:intron | 35.0% |
| !! | TACTTGACATTGATGATGGA+GGG | - | chr1_2:25863700-25863719 | Msa0064580:CDS | 35.0% |
| ! | GTTGATTTCTGTTTGGACTT+CGG | + | chr1_2:25863832-25863851 | None:intergenic | 35.0% |
| GAAGTCCAAACAGAAATCAA+CGG | - | chr1_2:25863831-25863850 | Msa0064580:exon | 35.0% | |
| TAGGAGAAAGCAAAGGAGAA+AGG | + | chr1_2:25859971-25859990 | None:intergenic | 40.0% | |
| CCAAAGATAGGAGAAAGCAA+AGG | + | chr1_2:25859978-25859997 | None:intergenic | 40.0% | |
| CCTTTGCTTTCTCCTATCTT+TGG | - | chr1_2:25859975-25859994 | Msa0064580:three_prime_UTR | 40.0% | |
| ! | AGGGTCTTGTGATTTCATGA+AGG | - | chr1_2:25860074-25860093 | Msa0064580:three_prime_UTR | 40.0% |
| GTATGCAAAGAAGTGGAATG+TGG | - | chr1_2:25860209-25860228 | Msa0064580:CDS | 40.0% | |
| AAAGAAGTGGAATGTGGGAA+AGG | - | chr1_2:25860215-25860234 | Msa0064580:CDS | 40.0% | |
| AATGTGAGTGTGATCATGGT+TGG | - | chr1_2:25860276-25860295 | Msa0064580:intron | 40.0% | |
| TGGAAGAAAGCTCTTGATTC+CGG | - | chr1_2:25860296-25860315 | Msa0064580:intron | 40.0% | |
| TTAGTGTCCAAGAAAGAGGA+AGG | + | chr1_2:25860375-25860394 | None:intergenic | 40.0% | |
| ! | TAATCCGTACGCAAAAGTAC+CGG | - | chr1_2:25860478-25860497 | Msa0064580:intron | 40.0% |
| GTTCTCCCAAATAATCTCAC+CGG | + | chr1_2:25860500-25860519 | None:intergenic | 40.0% | |
| ATTTAGATGCACGACCTAGT+TGG | + | chr1_2:25860723-25860742 | None:intergenic | 40.0% | |
| ACACTTAGGCATGTTTGCAT+TGG | - | chr1_2:25860802-25860821 | Msa0064580:intron | 40.0% | |
| ACCGTTGAAGGAATCAATGT+TGG | + | chr1_2:25861083-25861102 | None:intergenic | 40.0% | |
| ! | ATTCCTTCAACGGTGTCAAT+TGG | - | chr1_2:25861089-25861108 | Msa0064580:intron | 40.0% |
| !! | TTAATCCTTCTGGGACACTA+TGG | + | chr1_2:25861125-25861144 | None:intergenic | 40.0% |
| ATAGTGTCCCAGAAGGATTA+AGG | - | chr1_2:25861124-25861143 | Msa0064580:intron | 40.0% | |
| TAGTGTCCCAGAAGGATTAA+GGG | - | chr1_2:25861125-25861144 | Msa0064580:intron | 40.0% | |
| ATCAACCCCTTAATCCTTCT+GGG | + | chr1_2:25861134-25861153 | None:intergenic | 40.0% | |
| TATCAACCCCTTAATCCTTC+TGG | + | chr1_2:25861135-25861154 | None:intergenic | 40.0% | |
| GCATCTGTGTGTGATTGAAA+AGG | - | chr1_2:25861236-25861255 | Msa0064580:intron | 40.0% | |
| ACACACAACTAAACCAGCAA+TGG | - | chr1_2:25861600-25861619 | Msa0064580:CDS | 40.0% | |
| AAACGTTGCATTTCCATTGC+TGG | + | chr1_2:25861616-25861635 | None:intergenic | 40.0% | |
| GATATGGTTACAGTTGTGAC+TGG | + | chr1_2:25861782-25861801 | None:intergenic | 40.0% | |
| !!! | TTTTGCTTTTTCTGGAGCAG+GGG | + | chr1_2:25862050-25862069 | None:intergenic | 40.0% |
| AAGGAAAGGTAGTGACATTG+AGG | + | chr1_2:25862280-25862299 | None:intergenic | 40.0% | |
| !! | ACATTCTCTGAAGCAAGGAA+AGG | + | chr1_2:25862294-25862313 | None:intergenic | 40.0% |
| GCACCTAATTGGTTGTGATT+TGG | - | chr1_2:25862435-25862454 | Msa0064580:intron | 40.0% | |
| ATTTGAAGGTTCCATTGGCA+TGG | - | chr1_2:25862615-25862634 | Msa0064580:intron | 40.0% | |
| TTTGAAGGTTCCATTGGCAT+GGG | - | chr1_2:25862616-25862635 | Msa0064580:intron | 40.0% | |
| TCCACCACCAGTATTAAATG+AGG | - | chr1_2:25862684-25862703 | Msa0064580:intron | 40.0% | |
| TCCTCATTTAATACTGGTGG+TGG | + | chr1_2:25862688-25862707 | None:intergenic | 40.0% | |
| CTGTCCTCATTTAATACTGG+TGG | + | chr1_2:25862691-25862710 | None:intergenic | 40.0% | |
| GGACAGTAAGAATGAAGGTA+AGG | - | chr1_2:25862705-25862724 | Msa0064580:intron | 40.0% | |
| ! | TTGGCTTGAGAAATCAGAAG+AGG | + | chr1_2:25863189-25863208 | None:intergenic | 40.0% |
| CACGCCAATATCTGTGTTAT+GGG | + | chr1_2:25863260-25863279 | None:intergenic | 40.0% | |
| ACACGCCAATATCTGTGTTA+TGG | + | chr1_2:25863261-25863280 | None:intergenic | 40.0% | |
| TCAGCTGTCTCAATTCTACA+AGG | - | chr1_2:25863439-25863458 | Msa0064580:CDS | 40.0% | |
| CTGTCTCAATTCTACAAGGA+AGG | - | chr1_2:25863443-25863462 | Msa0064580:CDS | 40.0% | |
| !! | CTACTTGACATTGATGATGG+AGG | - | chr1_2:25863699-25863718 | Msa0064580:CDS | 40.0% |
| ! | AGGAAAATGCTAAGGAGTGT+TGG | + | chr1_2:25863745-25863764 | None:intergenic | 40.0% |
| ATTTCTGTTTGGACTTCGGA+CGG | + | chr1_2:25863828-25863847 | None:intergenic | 40.0% | |
| !! | CATCACCGTTGATTTCTGTT+TGG | + | chr1_2:25863839-25863858 | None:intergenic | 40.0% |
| CTCTTGATTCCGGTGATGAT+GGG | - | chr1_2:25860306-25860325 | Msa0064580:intron | 45.0% | |
| ! | TCTTGATTCCGGTGATGATG+GGG | - | chr1_2:25860307-25860326 | Msa0064580:intron | 45.0% |
| TCTCCAATTGACACCGTTGA+AGG | + | chr1_2:25861095-25861114 | None:intergenic | 45.0% | |
| AGTGTCCCAGAAGGATTAAG+GGG | - | chr1_2:25861126-25861145 | Msa0064580:intron | 45.0% | |
| ! | GCAGTTACGGACTTTGCTAT+TGG | + | chr1_2:25861725-25861744 | None:intergenic | 45.0% |
| CGCAGTCACAATTGCAGTTA+CGG | + | chr1_2:25861738-25861757 | None:intergenic | 45.0% | |
| TTCTACAAGGAAGGTCCCTT+TGG | - | chr1_2:25863452-25863471 | Msa0064580:CDS | 45.0% | |
| AATCACCAAGACCAGCCAAA+GGG | + | chr1_2:25863470-25863489 | None:intergenic | 45.0% | |
| TAATCACCAAGACCAGCCAA+AGG | + | chr1_2:25863471-25863490 | None:intergenic | 45.0% | |
| !! | TTGGCTGGTCTTGGTGATTA+TGG | - | chr1_2:25863471-25863490 | Msa0064580:intron | 45.0% |
| ! | GGTCTTGGTGATTATGGTGA+TGG | - | chr1_2:25863477-25863496 | Msa0064580:intron | 45.0% |
| GGCAAAGATACAGTTGCACT+AGG | - | chr1_2:25863498-25863517 | Msa0064580:intron | 45.0% | |
| AGTTGCACTAGGACAGTATC+TGG | - | chr1_2:25863509-25863528 | Msa0064580:intron | 45.0% | |
| !!! | TTTTGCCTTTGGTTTGGGAC+TGG | - | chr1_2:25863554-25863573 | Msa0064580:intron | 45.0% |
| TATCACCAGTCCCAAACCAA+AGG | + | chr1_2:25863562-25863581 | None:intergenic | 45.0% | |
| ! | GATTCCATGCTCTAAATGCG+TGG | - | chr1_2:25863784-25863803 | Msa0064580:CDS | 45.0% |
| !!! | TTTTTATTGATATTAATTTA+AGG | - | chr1_2:25860054-25860073 | Msa0064580:three_prime_UTR | 5.0% |
| !!! | TTTTATTGATATTAATTTAA+GGG | - | chr1_2:25860055-25860074 | Msa0064580:three_prime_UTR | 5.0% |
| !!! | ATTTTTTTTTTTAATTCTTT+TGG | - | chr1_2:25862930-25862949 | Msa0064580:intron | 5.0% |
| GCTCTTGATTCCGGTGATGA+TGG | - | chr1_2:25860305-25860324 | Msa0064580:intron | 50.0% | |
| !! | CTTGATTCCGGTGATGATGG+GGG | - | chr1_2:25860308-25860327 | Msa0064580:intron | 50.0% |
| CTTCAATCCCCCATCATCAC+CGG | + | chr1_2:25860318-25860337 | None:intergenic | 50.0% | |
| ! | CTCACCGGTACTTTTGCGTA+CGG | + | chr1_2:25860485-25860504 | None:intergenic | 50.0% |
| GCACTAGGACAGTATCTGGA+TGG | - | chr1_2:25863513-25863532 | Msa0064580:intron | 50.0% | |
| ! | TGAGCCACGCATTTAGAGCA+TGG | + | chr1_2:25863791-25863810 | None:intergenic | 50.0% |
| TGCGTCCATAGTGTCCCAGA+AGG | - | chr1_2:25861117-25861136 | Msa0064580:intron | 55.0% | |
| !! | GCTTGCCATTGGGTTGACTG+TGG | - | chr1_2:25862185-25862204 | Msa0064580:intron | 55.0% |
| !! | TGCCATTGGGTTGACTGTGG+AGG | - | chr1_2:25862188-25862207 | Msa0064580:intron | 55.0% |
| CACCTCCACAGTCAACCCAA+TGG | + | chr1_2:25862193-25862212 | None:intergenic | 55.0% | |
| !! | CATTGGGTTGACTGTGGAGG+TGG | - | chr1_2:25862191-25862210 | Msa0064580:intron | 55.0% |
| ACAAGGAAGGTCCCTTTGGC+TGG | - | chr1_2:25863456-25863475 | Msa0064580:CDS | 55.0% | |
| !! | AAGGTCCCTTTGGCTGGTCT+TGG | - | chr1_2:25863462-25863481 | Msa0064580:CDS | 55.0% |
| !!! | GCTTTTTCTGGAGCAGGGGC+TGG | + | chr1_2:25862046-25862065 | None:intergenic | 60.0% |
| GTCAGAGCAGCCCATGCCAA+TGG | + | chr1_2:25862629-25862648 | None:intergenic | 60.0% | |
| TGGAGCAGGGGCTGGAGCTT+TGG | + | chr1_2:25862038-25862057 | None:intergenic | 65.0% | |
| ! | GGCATGGGCTGCTCTGACCT+TGG | - | chr1_2:25862631-25862650 | Msa0064580:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 25859760 | 25863927 | 25859760 | ID=Msa0064580;Name=Msa0064580 |
| chr1_2 | mRNA | 25859760 | 25863927 | 25859760 | ID=Msa0064580-mRNA-1;Parent=Msa0064580;Name=Msa0064580-mRNA-1;_AED=0.03;_eAED=0.03;_QI=83|0.8|0.83|1|1|1|6|340|264 |
| chr1_2 | exon | 25859760 | 25860244 | 25859760 | ID=Msa0064580-mRNA-1:exon:9200;Parent=Msa0064580-mRNA-1 |
| chr1_2 | exon | 25860935 | 25861064 | 25860935 | ID=Msa0064580-mRNA-1:exon:9199;Parent=Msa0064580-mRNA-1 |
| chr1_2 | exon | 25861376 | 25861501 | 25861376 | ID=Msa0064580-mRNA-1:exon:9198;Parent=Msa0064580-mRNA-1 |
| chr1_2 | exon | 25861593 | 25861673 | 25861593 | ID=Msa0064580-mRNA-1:exon:9197;Parent=Msa0064580-mRNA-1 |
| chr1_2 | exon | 25863325 | 25863483 | 25863325 | ID=Msa0064580-mRNA-1:exon:9196;Parent=Msa0064580-mRNA-1 |
| chr1_2 | exon | 25863691 | 25863927 | 25863691 | ID=Msa0064580-mRNA-1:exon:9195;Parent=Msa0064580-mRNA-1 |
| chr1_2 | five_prime_UTR | 25863845 | 25863927 | 25863845 | ID=Msa0064580-mRNA-1:five_prime_utr;Parent=Msa0064580-mRNA-1 |
| chr1_2 | CDS | 25863691 | 25863844 | 25863691 | ID=Msa0064580-mRNA-1:cds;Parent=Msa0064580-mRNA-1 |
| chr1_2 | CDS | 25863325 | 25863483 | 25863325 | ID=Msa0064580-mRNA-1:cds;Parent=Msa0064580-mRNA-1 |
| chr1_2 | CDS | 25861593 | 25861673 | 25861593 | ID=Msa0064580-mRNA-1:cds;Parent=Msa0064580-mRNA-1 |
| chr1_2 | CDS | 25861376 | 25861501 | 25861376 | ID=Msa0064580-mRNA-1:cds;Parent=Msa0064580-mRNA-1 |
| chr1_2 | CDS | 25860935 | 25861064 | 25860935 | ID=Msa0064580-mRNA-1:cds;Parent=Msa0064580-mRNA-1 |
| chr1_2 | CDS | 25860100 | 25860244 | 25860100 | ID=Msa0064580-mRNA-1:cds;Parent=Msa0064580-mRNA-1 |
| chr1_2 | three_prime_UTR | 25859760 | 25860099 | 25859760 | ID=Msa0064580-mRNA-1:three_prime_utr;Parent=Msa0064580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
