Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155640 | XP_013467030.1 | 92.632 | 190 | 13 | 1 | 1 | 189 | 1 | 190 | 1.24e-119 | 350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155640 | A0A072VSF9 | 92.632 | 190 | 13 | 1 | 1 | 189 | 1 | 190 | 5.91e-120 | 350 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa0155640 | 0.811121 | 8.204402e-51 | -8.615850e-47 |
| Msa0064580 | Msa0155640 | 0.874824 | 4.993312e-68 | -8.615850e-47 |
| Msa0155640 | Msa0306570 | 0.913318 | 7.071898e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155640 | MtrunA17_Chr1g0166401 | 92.632 | 190 | 13 | 1 | 1 | 189 | 1 | 190 | 1.14e-123 | 350 |
| Msa0155640 | MtrunA17_Chr1g0190821 | 48.824 | 170 | 81 | 3 | 5 | 173 | 8 | 172 | 8.20e-53 | 169 |
| Msa0155640 | MtrunA17_Chr7g0273981 | 36.264 | 182 | 106 | 4 | 1 | 172 | 1 | 182 | 2.39e-31 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155640 | AT4G14746.1 | 53.459 | 159 | 67 | 3 | 11 | 167 | 13 | 166 | 4.00e-56 | 179 |
| Msa0155640 | AT4G14746.2 | 52.427 | 103 | 43 | 2 | 11 | 112 | 13 | 110 | 3.60e-30 | 111 |
Find 75 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCTGGTCTTGGTGATTA+TGG | 0.232638 | 1_4:-21199411 | Msa0155640:CDS |
| CCTTTGCTTTCTCCTATCTT+TGG | 0.233883 | 1_4:-21202897 | Msa0155640:intron |
| TGGAGCAGGGGCTGGAGCTT+TGG | 0.238264 | 1_4:+21200857 | None:intergenic |
| TTGGGAGTGGTGATATTATA+GGG | 0.285390 | 1_4:-21199315 | Msa0155640:exon |
| CTAATCTAATCAAATTAAAA+AGG | 0.285577 | 1_4:+21199120 | None:intergenic |
| TTTGGGAGTGGTGATATTAT+AGG | 0.293439 | 1_4:-21199316 | Msa0155640:exon |
| AAATGTAACATAAATTTGTT+AGG | 0.328125 | 1_4:+21203082 | None:intergenic |
| TTACTGTCCTCATTTAATAC+TGG | 0.329549 | 1_4:+21200202 | None:intergenic |
| GGGAAAGTACTATTCTTAGA+AGG | 0.343373 | 1_4:+21202616 | None:intergenic |
| AAGGTCCCTTTGGCTGGTCT+TGG | 0.360445 | 1_4:-21199420 | Msa0155640:CDS |
| TGGAAGAAAGCTCTTGATTC+CGG | 0.360879 | 1_4:-21202568 | Msa0155640:CDS |
| GGCATGGGCTGCTCTGACCT+TGG | 0.369624 | 1_4:-21200262 | Msa0155640:CDS |
| CATCACCGTTGATTTCTGTT+TGG | 0.375158 | 1_4:+21199046 | None:intergenic |
| TCAACTATCTCAAATTATAA+TGG | 0.378090 | 1_4:-21198986 | Msa0155640:three_prime_UTR |
| TTCTACAAGGAAGGTCCCTT+TGG | 0.401052 | 1_4:-21199430 | Msa0155640:CDS |
| AGTTGCACTAGGACAGTATC+TGG | 0.416182 | 1_4:-21199373 | Msa0155640:CDS |
| AAGAGTTACAAACCAAAGAT+AGG | 0.417790 | 1_4:+21202885 | None:intergenic |
| ACCATCAAATATTGATGCAT+TGG | 0.419728 | 1_4:+21200818 | None:intergenic |
| CTCTTGATTCCGGTGATGAT+GGG | 0.428084 | 1_4:-21202558 | Msa0155640:CDS |
| GCTCTTGATTCCGGTGATGA+TGG | 0.432005 | 1_4:-21202559 | Msa0155640:CDS |
| ATTCTACTTGACATTGATGA+TGG | 0.432676 | 1_4:-21199186 | Msa0155640:three_prime_UTR |
| ACAAGGAAGGTCCCTTTGGC+TGG | 0.436384 | 1_4:-21199426 | Msa0155640:CDS |
| TCCAATGCATCAATATTTGA+TGG | 0.436463 | 1_4:-21200819 | Msa0155640:intron |
| TTTGAATTTGAAGGTTCCAT+TGG | 0.449421 | 1_4:-21200283 | Msa0155640:intron |
| TGATCACACTCACATTCAAA+AGG | 0.452842 | 1_4:+21202595 | None:intergenic |
| ATATAAATGAATGACTAGTT+AGG | 0.458716 | 1_4:+21203050 | None:intergenic |
| CTAGTACAAAAGAGATGTTA+TGG | 0.462801 | 1_4:-21199257 | Msa0155640:three_prime_UTR |
| AGGAAAATGCTAAGGAGTGT+TGG | 0.471318 | 1_4:+21199140 | None:intergenic |
| TTTGAATGTGAGTGTGATCA+TGG | 0.477887 | 1_4:-21202592 | Msa0155640:CDS |
| TAGGAGAAAGCAAAGGAGAA+AGG | 0.478068 | 1_4:+21202904 | None:intergenic |
| CATTGGGTTGACTGTGGAGG+TGG | 0.494026 | 1_4:-21200702 | Msa0155640:CDS |
| ATTTGAAGGTTCCATTGGCA+TGG | 0.505978 | 1_4:-21200278 | Msa0155640:intron |
| GTTGATTTCTGTTTGGACTT+CGG | 0.520230 | 1_4:+21199053 | None:intergenic |
| CTGTCCTCATTTAATACTGG+TGG | 0.531289 | 1_4:+21200205 | None:intergenic |
| TCCTCATTTAATACTGGTGG+TGG | 0.537440 | 1_4:+21200208 | None:intergenic |
| GGTCTTGGTGATTATGGTGA+TGG | 0.541288 | 1_4:-21199405 | Msa0155640:CDS |
| AATGTGAGTGTGATCATGGT+TGG | 0.543163 | 1_4:-21202588 | Msa0155640:CDS |
| AGATGATGTATGCAAAGAAG+TGG | 0.544147 | 1_4:-21202662 | Msa0155640:CDS |
| AGTTTGACATTGATATTCCA+AGG | 0.549867 | 1_4:+21200245 | None:intergenic |
| TTTGAAGGTTCCATTGGCAT+GGG | 0.552267 | 1_4:-21200277 | Msa0155640:intron |
| GATCACACTCACATTCAAAA+GGG | 0.561000 | 1_4:+21202596 | None:intergenic |
| GGACAGTAAGAATGAAGGTA+AGG | 0.562725 | 1_4:-21200188 | Msa0155640:CDS |
| TGCCATTGGGTTGACTGTGG+AGG | 0.564067 | 1_4:-21200705 | Msa0155640:CDS |
| AAGGAAAGGTAGTGACATTG+AGG | 0.565068 | 1_4:+21200616 | None:intergenic |
| GTCAGAGCAGCCCATGCCAA+TGG | 0.565591 | 1_4:+21200267 | None:intergenic |
| AATGAGGACAGTAAGAATGA+AGG | 0.572553 | 1_4:-21200193 | Msa0155640:CDS |
| CTGTCTCAATTCTACAAGGA+AGG | 0.575645 | 1_4:-21199439 | Msa0155640:CDS |
| TCAGCTGTCTCAATTCTACA+AGG | 0.577319 | 1_4:-21199443 | Msa0155640:intron |
| TCTTGATTCCGGTGATGATG+GGG | 0.578509 | 1_4:-21202557 | Msa0155640:CDS |
| ATCTTACATTCTCTGAAGCA+AGG | 0.581134 | 1_4:+21200597 | None:intergenic |
| ATTTCTGTTTGGACTTCGGA+CGG | 0.584237 | 1_4:+21199057 | None:intergenic |
| TGAGCCACGCATTTAGAGCA+TGG | 0.586849 | 1_4:+21199094 | None:intergenic |
| GCTTGCCATTGGGTTGACTG+TGG | 0.588618 | 1_4:-21200708 | Msa0155640:CDS |
| TACTTGACATTGATGATGGA+GGG | 0.599003 | 1_4:-21199182 | Msa0155640:three_prime_UTR |
| AATTAACAGAATTCAGATGT+GGG | 0.601105 | 1_4:+21203015 | None:intergenic |
| CTTGATTCCGGTGATGATGG+GGG | 0.605222 | 1_4:-21202556 | Msa0155640:CDS |
| CTACTTGACATTGATGATGG+AGG | 0.608480 | 1_4:-21199183 | Msa0155640:three_prime_UTR |
| TAATTAACAGAATTCAGATG+TGG | 0.611816 | 1_4:+21203014 | None:intergenic |
| AAAGAAGTGGAATGTGGGAA+AGG | 0.615099 | 1_4:-21202649 | Msa0155640:CDS |
| AATCACCAAGACCAGCCAAA+GGG | 0.616260 | 1_4:+21199415 | None:intergenic |
| GCACTAGGACAGTATCTGGA+TGG | 0.616572 | 1_4:-21199369 | Msa0155640:CDS |
| TATGCAAAGAAGTGGAATGT+GGG | 0.618938 | 1_4:-21202654 | Msa0155640:CDS |
| ACATTCTCTGAAGCAAGGAA+AGG | 0.624340 | 1_4:+21200602 | None:intergenic |
| TAATCACCAAGACCAGCCAA+AGG | 0.642532 | 1_4:+21199414 | None:intergenic |
| TCCACCACCAGTATTAAATG+AGG | 0.645408 | 1_4:-21200209 | Msa0155640:CDS |
| TTACAATTAGGAATGATGCA+AGG | 0.645535 | 1_4:+21202520 | None:intergenic |
| GTATGCAAAGAAGTGGAATG+TGG | 0.652199 | 1_4:-21202655 | Msa0155640:CDS |
| ATAGTGAATGAAGAAAAGCT+AGG | 0.654634 | 1_4:+21199217 | None:intergenic |
| CACCTCCACAGTCAACCCAA+TGG | 0.654789 | 1_4:+21200703 | None:intergenic |
| TATCACCACTCCCAAACCAA+AGG | 0.656070 | 1_4:+21199323 | None:intergenic |
| GATTCCATGCTCTAAATGCG+TGG | 0.656761 | 1_4:-21199098 | Msa0155640:three_prime_UTR |
| CCAAAGATAGGAGAAAGCAA+AGG | 0.659740 | 1_4:+21202897 | None:intergenic |
| GGCAAAGATACAGTTGCACT+AGG | 0.659862 | 1_4:-21199384 | Msa0155640:CDS |
| GAAGTCCAAACAGAAATCAA+CGG | 0.674086 | 1_4:-21199051 | Msa0155640:three_prime_UTR |
| ATTAACAGAATTCAGATGTG+GGG | 0.687788 | 1_4:+21203016 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTGTTAATATAGTATA+TGG | - | chr1_4:21199351-21199370 | Msa0155640:CDS | 10.0% |
| !! | TATCTTATATAAAAATAGTT+TGG | - | chr1_4:21200192-21200211 | Msa0155640:CDS | 10.0% |
| !! | TTTATCTTAAATTTGTAATA+AGG | - | chr1_4:21200642-21200661 | Msa0155640:CDS | 10.0% |
| !! | CTAAAAATATTTAATATTCT+TGG | - | chr1_4:21201157-21201176 | Msa0155640:intron | 10.0% |
| !!! | TGATATCATTTTTATTTTTT+AGG | - | chr1_4:21201189-21201208 | Msa0155640:intron | 10.0% |
| !!! | AAATTCTAAAATATTAAGAA+AGG | - | chr1_4:21202041-21202060 | Msa0155640:intron | 10.0% |
| !!! | CATTATTTTTTTAATTCTTT+TGG | - | chr1_4:21202125-21202144 | Msa0155640:intron | 10.0% |
| !!! | AAATGTAACATAAATTTGTT+AGG | + | chr1_4:21199010-21199029 | None:intergenic | 15.0% |
| !!! | TTACTTTCTAAAGTTAAAAA+TGG | - | chr1_4:21199095-21199114 | Msa0155640:three_prime_UTR | 15.0% |
| !! | TTCTGTTTATGTATAAATTA+TGG | - | chr1_4:21199654-21199673 | Msa0155640:intron | 15.0% |
| !!! | TAAATAAAGATTTTTATGTG+TGG | - | chr1_4:21199963-21199982 | Msa0155640:intron | 15.0% |
| !!! | TTTTTATTTTTTAGGTACAT+TGG | - | chr1_4:21201197-21201216 | Msa0155640:intron | 15.0% |
| !!! | AAATTTTACATTTTATGATC+TGG | + | chr1_4:21201580-21201599 | None:intergenic | 15.0% |
| !!! | TTATTTAATTTCTACTACTT+TGG | + | chr1_4:21201772-21201791 | None:intergenic | 15.0% |
| !!! | GATTTTAAATTTGAATTTGA+AGG | - | chr1_4:21201797-21201816 | Msa0155640:intron | 15.0% |
| !! | AATTTAAAAACACATATACA+AGG | + | chr1_4:21202026-21202045 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTCAAATTATCAT+CGG | + | chr1_4:21202484-21202503 | None:intergenic | 15.0% |
| !! | CTAATCTAATCAAATTAAAA+AGG | + | chr1_4:21202972-21202991 | None:intergenic | 15.0% |
| !!! | TTTTAATGTAAAGGAATAGT+AGG | + | chr1_4:21198986-21199005 | None:intergenic | 20.0% |
| !!! | TTGTTAGGTTTTTAATGTAA+AGG | + | chr1_4:21198995-21199014 | None:intergenic | 20.0% |
| !!! | ATATAAATGAATGACTAGTT+AGG | + | chr1_4:21199042-21199061 | None:intergenic | 20.0% |
| !!! | AAAGAGATAAGAGTATATAA+AGG | + | chr1_4:21199233-21199252 | None:intergenic | 20.0% |
| !!! | GTAATTTTCATAAGATATCA+TGG | + | chr1_4:21199812-21199831 | None:intergenic | 20.0% |
| !!! | AATAAGTTGAAAACAGATTA+TGG | + | chr1_4:21200134-21200153 | None:intergenic | 20.0% |
| !!! | CTTATTTCTATAATATCTCT+AGG | - | chr1_4:21200148-21200167 | Msa0155640:intron | 20.0% |
| !!! | TTTGTTATTAGTTGATTTCT+TGG | + | chr1_4:21200487-21200506 | None:intergenic | 20.0% |
| !! | AAGAAATCAACTAATAACAA+AGG | - | chr1_4:21200486-21200505 | Msa0155640:intron | 20.0% |
| !! | TAACTCAAAGATATAACTAT+AGG | - | chr1_4:21201293-21201312 | Msa0155640:intron | 20.0% |
| !! | AACTCAAAGATATAACTATA+GGG | - | chr1_4:21201294-21201313 | Msa0155640:intron | 20.0% |
| !! | CAGTAATTCAATTCATAATT+AGG | - | chr1_4:21201951-21201970 | Msa0155640:intron | 20.0% |
| !!! | ATTTTTTTAATTCTTTTGGC+AGG | - | chr1_4:21202129-21202148 | Msa0155640:intron | 20.0% |
| !!! | TTTTTTCGACAAGTTATTTT+TGG | + | chr1_4:21202403-21202422 | None:intergenic | 20.0% |
| !!! | AAATGAAAGTATTATCACAT+GGG | + | chr1_4:21202615-21202634 | None:intergenic | 20.0% |
| !!! | AAAATGAAAGTATTATCACA+TGG | + | chr1_4:21202616-21202635 | None:intergenic | 20.0% |
| !! | AATTAAAAAGGAAAATGCTA+AGG | + | chr1_4:21202960-21202979 | None:intergenic | 20.0% |
| !! | TCAACTATCTCAAATTATAA+TGG | - | chr1_4:21203103-21203122 | Msa0155640:five_prime_UTR | 20.0% |
| ! | AATTAACAGAATTCAGATGT+GGG | + | chr1_4:21199077-21199096 | None:intergenic | 25.0% |
| ! | TAATTAACAGAATTCAGATG+TGG | + | chr1_4:21199078-21199097 | None:intergenic | 25.0% |
| ! | TATACTCTTATCTCTTTGAT+TGG | - | chr1_4:21199236-21199255 | Msa0155640:three_prime_UTR | 25.0% |
| !! | GTATAAATTATGGACTTGTT+TGG | - | chr1_4:21199664-21199683 | Msa0155640:intron | 25.0% |
| ! | AATAAGCTAAACACACTTTA+GGG | + | chr1_4:21199777-21199796 | None:intergenic | 25.0% |
| ! | AAATAAGCTAAACACACTTT+AGG | + | chr1_4:21199778-21199797 | None:intergenic | 25.0% |
| !!! | AATATCTCTAGGATAACTTA+TGG | - | chr1_4:21200159-21200178 | Msa0155640:intron | 25.0% |
| ! | AAAATACACGTTTCGATAAA+CGG | + | chr1_4:21200360-21200379 | None:intergenic | 25.0% |
| ! | AAATCAACTAATAACAAAGG+AGG | - | chr1_4:21200489-21200508 | Msa0155640:intron | 25.0% |
| ! | AGAATTAAGGAAGAAAAGTT+TGG | + | chr1_4:21200526-21200545 | None:intergenic | 25.0% |
| !!! | CAAGAAAATCTCTAGAATTA+AGG | + | chr1_4:21200539-21200558 | None:intergenic | 25.0% |
| !! | CAAATGCTTAATTTTCAACA+TGG | - | chr1_4:21200619-21200638 | Msa0155640:CDS | 25.0% |
| ! | GGTTTAATCACACTATAAAA+AGG | - | chr1_4:21200663-21200682 | Msa0155640:CDS | 25.0% |
| ! | AACTTTATACAATTGCATGT+TGG | - | chr1_4:21200855-21200874 | Msa0155640:CDS | 25.0% |
| !!! | ACAAAAATAGTTTTACATCG+CGG | + | chr1_4:21201045-21201064 | None:intergenic | 25.0% |
| !!! | TTGGATTTTTTTGCTTTTTC+TGG | + | chr1_4:21201255-21201274 | None:intergenic | 25.0% |
| !!! | TTTTAAGTTAAGCACCTAAT+TGG | - | chr1_4:21201620-21201639 | Msa0155640:intron | 25.0% |
| ! | ACAATGTATCAAAGTTTAAC+TGG | - | chr1_4:21201679-21201698 | Msa0155640:intron | 25.0% |
| ! | AAAATCATTAGTACTGTGAT+TGG | - | chr1_4:21201702-21201721 | Msa0155640:intron | 25.0% |
| ! | ATCCAAATTGCAATTAGATT+AGG | - | chr1_4:21202177-21202196 | Msa0155640:intron | 25.0% |
| ! | ATCCTAATCTAATTGCAATT+TGG | + | chr1_4:21202182-21202201 | None:intergenic | 25.0% |
| !! | TAGATTAGGATTGTTTTCTA+AGG | - | chr1_4:21202191-21202210 | Msa0155640:intron | 25.0% |
| !!! | CCATTTTTGTATGACTTTTA+AGG | + | chr1_4:21202310-21202329 | None:intergenic | 25.0% |
| ! | CCTTAAAAGTCATACAAAAA+TGG | - | chr1_4:21202307-21202326 | Msa0155640:intron | 25.0% |
| ATTAACAGAATTCAGATGTG+GGG | + | chr1_4:21199076-21199095 | None:intergenic | 30.0% | |
| !!! | AAGTCACTTTTAGTTGAAAG+AGG | + | chr1_4:21199165-21199184 | None:intergenic | 30.0% |
| AAGAGTTACAAACCAAAGAT+AGG | + | chr1_4:21199207-21199226 | None:intergenic | 30.0% | |
| TTTCATGAAGGATCATCAAA+AGG | - | chr1_4:21199311-21199330 | Msa0155640:exon | 30.0% | |
| TTCATGAAGGATCATCAAAA+GGG | - | chr1_4:21199312-21199331 | Msa0155640:exon | 30.0% | |
| TTACAATTAGGAATGATGCA+AGG | + | chr1_4:21199572-21199591 | None:intergenic | 30.0% | |
| AGGAAGGAATTCTTACAATT+AGG | + | chr1_4:21199584-21199603 | None:intergenic | 30.0% | |
| TTTATTAGTGTCCAAGAAAG+AGG | + | chr1_4:21199604-21199623 | None:intergenic | 30.0% | |
| TCAAATCAATCAATCCAACT+AGG | - | chr1_4:21199931-21199950 | Msa0155640:intron | 30.0% | |
| TGTTGATATAGACATAGTGT+TGG | + | chr1_4:21200002-21200021 | None:intergenic | 30.0% | |
| ATATCAACAGAGTAACACTT+AGG | - | chr1_4:21200013-21200032 | Msa0155640:intron | 30.0% | |
| !! | GTGTATTTTTGCAAAGCAAA+AGG | - | chr1_4:21200371-21200390 | Msa0155640:intron | 30.0% |
| TTGAAAAGGTTCATGGTATT+TGG | - | chr1_4:21200447-21200466 | Msa0155640:intron | 30.0% | |
| ! | AGAGATTTTCTTGATATGCT+TGG | - | chr1_4:21200546-21200565 | Msa0155640:intron | 30.0% |
| ! | TCCAAACTTTCATTTGCTTT+TGG | - | chr1_4:21200722-21200741 | Msa0155640:intron | 30.0% |
| TCCAAAAGCAAATGAAAGTT+TGG | + | chr1_4:21200726-21200745 | None:intergenic | 30.0% | |
| CTTGATATTGCGAAAAATTG+TGG | + | chr1_4:21201014-21201033 | None:intergenic | 30.0% | |
| ! | CACAATTTTTCGCAATATCA+AGG | - | chr1_4:21201012-21201031 | Msa0155640:intron | 30.0% |
| TCCAATGCATCAATATTTGA+TGG | - | chr1_4:21201270-21201289 | Msa0155640:intron | 30.0% | |
| ACCATCAAATATTGATGCAT+TGG | + | chr1_4:21201274-21201293 | None:intergenic | 30.0% | |
| ! | AGGGATCTCAATTTTATGTT+TGG | - | chr1_4:21201313-21201332 | Msa0155640:intron | 30.0% |
| TTTGAATTTGAAGGTTCCAT+TGG | - | chr1_4:21201806-21201825 | Msa0155640:intron | 30.0% | |
| AGTTTGACATTGATATTCCA+AGG | + | chr1_4:21201847-21201866 | None:intergenic | 30.0% | |
| TTACTGTCCTCATTTAATAC+TGG | + | chr1_4:21201890-21201909 | None:intergenic | 30.0% | |
| GTAACTAAATAAACCTAGCA+AGG | - | chr1_4:21202075-21202094 | Msa0155640:intron | 30.0% | |
| ! | TAATTCTTTTGGCAGGTATA+TGG | - | chr1_4:21202136-21202155 | Msa0155640:intron | 30.0% |
| ACTATGAGTCAATATCATGT+CGG | - | chr1_4:21202519-21202538 | Msa0155640:intron | 30.0% | |
| ACATGGGAAATATATTGAGT+AGG | + | chr1_4:21202599-21202618 | None:intergenic | 30.0% | |
| !!! | AGCTTTTCATTTTTTGCCTT+TGG | - | chr1_4:21202750-21202769 | Msa0155640:intron | 30.0% |
| !!! | TTCATTTTTTGCCTTTGGTT+TGG | - | chr1_4:21202755-21202774 | Msa0155640:intron | 30.0% |
| !!! | TCATTTTTTGCCTTTGGTTT+GGG | - | chr1_4:21202756-21202775 | Msa0155640:intron | 30.0% |
| CTAGTACAAAAGAGATGTTA+TGG | - | chr1_4:21202832-21202851 | Msa0155640:intron | 30.0% | |
| TGAAGAAAAGCTAGGAAAAA+AGG | + | chr1_4:21202867-21202886 | None:intergenic | 30.0% | |
| ATAGTGAATGAAGAAAAGCT+AGG | + | chr1_4:21202875-21202894 | None:intergenic | 30.0% | |
| ATTCTACTTGACATTGATGA+TGG | - | chr1_4:21202903-21202922 | Msa0155640:CDS | 30.0% | |
| AGAAGAAGAACTGCAAAAAG+AGG | + | chr1_4:21199138-21199157 | None:intergenic | 35.0% | |
| AGATGATGTATGCAAAGAAG+TGG | - | chr1_4:21199427-21199446 | Msa0155640:CDS | 35.0% | |
| TATGCAAAGAAGTGGAATGT+GGG | - | chr1_4:21199435-21199454 | Msa0155640:CDS | 35.0% | |
| !! | GGGAAAGTACTATTCTTAGA+AGG | + | chr1_4:21199476-21199495 | None:intergenic | 35.0% |
| GATCACACTCACATTCAAAA+GGG | + | chr1_4:21199496-21199515 | None:intergenic | 35.0% | |
| TGATCACACTCACATTCAAA+AGG | + | chr1_4:21199497-21199516 | None:intergenic | 35.0% | |
| TTTGAATGTGAGTGTGATCA+TGG | - | chr1_4:21199497-21199516 | Msa0155640:intron | 35.0% | |
| AAGAATTCCTTCCTCTTTCT+TGG | - | chr1_4:21199590-21199609 | Msa0155640:intron | 35.0% | |
| AAGATATCATGGAGAACTTG+TGG | + | chr1_4:21199801-21199820 | None:intergenic | 35.0% | |
| CTCATAAATGCTTATGCTAG+TGG | - | chr1_4:21199902-21199921 | Msa0155640:intron | 35.0% | |
| GCTTATTTGAGCTTATCTAC+TGG | - | chr1_4:21200049-21200068 | Msa0155640:intron | 35.0% | |
| !! | TCCAACATTGATTCCTTCAA+CGG | - | chr1_4:21200276-21200295 | Msa0155640:intron | 35.0% |
| GCAAAGCAAAAGGATTTATG+TGG | - | chr1_4:21200381-21200400 | Msa0155640:intron | 35.0% | |
| TGTGTGATTGAAAAGGTTCA+TGG | - | chr1_4:21200440-21200459 | Msa0155640:intron | 35.0% | |
| TGTATGTCAGTGTGTAATTC+AGG | - | chr1_4:21200571-21200590 | Msa0155640:intron | 35.0% | |
| TTGGTACAGCAGAAAAATAC+TGG | + | chr1_4:21200903-21200922 | None:intergenic | 35.0% | |
| GTGGTCAAATTAGACTGATA+TGG | + | chr1_4:21200995-21201014 | None:intergenic | 35.0% | |
| !!! | TTTTTGCTTTTTCTGGAGCA+GGG | + | chr1_4:21201248-21201267 | None:intergenic | 35.0% |
| !!! | TTTTTTGCTTTTTCTGGAGC+AGG | + | chr1_4:21201249-21201268 | None:intergenic | 35.0% |
| !!! | TATGTTTTCTAGCTTGCCAT+TGG | - | chr1_4:21201370-21201389 | Msa0155640:intron | 35.0% |
| !!! | ATGTTTTCTAGCTTGCCATT+GGG | - | chr1_4:21201371-21201390 | Msa0155640:intron | 35.0% |
| !! | ATCTTACATTCTCTGAAGCA+AGG | + | chr1_4:21201495-21201514 | None:intergenic | 35.0% |
| !!! | GACATGATTTTAACTGAGTG+AGG | + | chr1_4:21201524-21201543 | None:intergenic | 35.0% |
| CTGACGGTGTATATGAATTA+AGG | + | chr1_4:21201546-21201565 | None:intergenic | 35.0% | |
| TCTGGTGATTATTACACTGA+CGG | + | chr1_4:21201562-21201581 | None:intergenic | 35.0% | |
| TCACCAAATCACAACCAATT+AGG | + | chr1_4:21201637-21201656 | None:intergenic | 35.0% | |
| AATGAGGACAGTAAGAATGA+AGG | - | chr1_4:21201896-21201915 | Msa0155640:intron | 35.0% | |
| ! | GGTCACAACTCACAATTTTA+TGG | - | chr1_4:21201922-21201941 | Msa0155640:intron | 35.0% |
| AAGTTGTTATGTACCTTGCT+AGG | + | chr1_4:21202091-21202110 | None:intergenic | 35.0% | |
| !! | GGTTAATTTTGATGCACTGT+TGG | + | chr1_4:21202363-21202382 | None:intergenic | 35.0% |
| ! | TATATGTGTTGGTGCTTCAT+AGG | + | chr1_4:21202429-21202448 | None:intergenic | 35.0% |
| GTTATGGGTTCTATATGTGT+TGG | + | chr1_4:21202440-21202459 | None:intergenic | 35.0% | |
| AGAACCCATAACACAGATAT+TGG | - | chr1_4:21202448-21202467 | Msa0155640:intron | 35.0% | |
| ATTTCATACTAAAGACGTGC+TGG | + | chr1_4:21202554-21202573 | None:intergenic | 35.0% | |
| TTTGGGAGTGGTGATATTAT+AGG | - | chr1_4:21202773-21202792 | Msa0155640:intron | 35.0% | |
| TTGGGAGTGGTGATATTATA+GGG | - | chr1_4:21202774-21202793 | Msa0155640:intron | 35.0% | |
| !! | TACTTGACATTGATGATGGA+GGG | - | chr1_4:21202907-21202926 | Msa0155640:CDS | 35.0% |
| ! | GTTGATTTCTGTTTGGACTT+CGG | + | chr1_4:21203039-21203058 | None:intergenic | 35.0% |
| GAAGTCCAAACAGAAATCAA+CGG | - | chr1_4:21203038-21203057 | Msa0155640:five_prime_UTR | 35.0% | |
| TAGGAGAAAGCAAAGGAGAA+AGG | + | chr1_4:21199188-21199207 | None:intergenic | 40.0% | |
| CCAAAGATAGGAGAAAGCAA+AGG | + | chr1_4:21199195-21199214 | None:intergenic | 40.0% | |
| CCTTTGCTTTCTCCTATCTT+TGG | - | chr1_4:21199192-21199211 | Msa0155640:three_prime_UTR | 40.0% | |
| ! | AGGGTCTTGTGATTTCATGA+AGG | - | chr1_4:21199299-21199318 | Msa0155640:exon | 40.0% |
| GTATGCAAAGAAGTGGAATG+TGG | - | chr1_4:21199434-21199453 | Msa0155640:CDS | 40.0% | |
| AAAGAAGTGGAATGTGGGAA+AGG | - | chr1_4:21199440-21199459 | Msa0155640:CDS | 40.0% | |
| AATGTGAGTGTGATCATGGT+TGG | - | chr1_4:21199501-21199520 | Msa0155640:intron | 40.0% | |
| TGGAAGAAAGCTCTTGATTC+CGG | - | chr1_4:21199521-21199540 | Msa0155640:intron | 40.0% | |
| TTAGTGTCCAAGAAAGAGGA+AGG | + | chr1_4:21199600-21199619 | None:intergenic | 40.0% | |
| ! | AAAGTGCCAGTGAGATTGTT+TGG | - | chr1_4:21199716-21199735 | Msa0155640:intron | 40.0% |
| AAGTGCCAGTGAGATTGTTT+GGG | - | chr1_4:21199717-21199736 | Msa0155640:intron | 40.0% | |
| ATTTAGATGCACGACCTAGT+TGG | + | chr1_4:21199948-21199967 | None:intergenic | 40.0% | |
| ACACTTAGGCATGTTTGCAT+TGG | - | chr1_4:21200027-21200046 | Msa0155640:intron | 40.0% | |
| ACCGTTGAAGGAATCAATGT+TGG | + | chr1_4:21200280-21200299 | None:intergenic | 40.0% | |
| ! | ATTCCTTCAACGGTGTCAAT+TGG | - | chr1_4:21200286-21200305 | Msa0155640:intron | 40.0% |
| !! | TTAATCCTTCTGGGACACTA+TGG | + | chr1_4:21200322-21200341 | None:intergenic | 40.0% |
| ATAGTGTCCCAGAAGGATTA+AGG | - | chr1_4:21200321-21200340 | Msa0155640:intron | 40.0% | |
| TAGTGTCCCAGAAGGATTAA+GGG | - | chr1_4:21200322-21200341 | Msa0155640:intron | 40.0% | |
| ATCAACCCCTTAATCCTTCT+GGG | + | chr1_4:21200331-21200350 | None:intergenic | 40.0% | |
| TATCAACCCCTTAATCCTTC+TGG | + | chr1_4:21200332-21200351 | None:intergenic | 40.0% | |
| GCATCTGTGTGTGATTGAAA+AGG | - | chr1_4:21200433-21200452 | Msa0155640:intron | 40.0% | |
| ACACACAACTTTACCAGCAA+TGG | - | chr1_4:21200797-21200816 | Msa0155640:intron | 40.0% | |
| AAACGTTGCATTTCCATTGC+TGG | + | chr1_4:21200813-21200832 | None:intergenic | 40.0% | |
| GATATGGTTACAGTTGTGAC+TGG | + | chr1_4:21200979-21200998 | None:intergenic | 40.0% | |
| !!! | TTTTGCTTTTTCTGGAGCAG+GGG | + | chr1_4:21201247-21201266 | None:intergenic | 40.0% |
| AAGGAAAGGTAGTGACATTG+AGG | + | chr1_4:21201476-21201495 | None:intergenic | 40.0% | |
| !! | ACATTCTCTGAAGCAAGGAA+AGG | + | chr1_4:21201490-21201509 | None:intergenic | 40.0% |
| GCACCTAATTGGTTGTGATT+TGG | - | chr1_4:21201631-21201650 | Msa0155640:intron | 40.0% | |
| ATTTGAAGGTTCCATTGGCA+TGG | - | chr1_4:21201811-21201830 | Msa0155640:intron | 40.0% | |
| TTTGAAGGTTCCATTGGCAT+GGG | - | chr1_4:21201812-21201831 | Msa0155640:intron | 40.0% | |
| TCCACCACCAGTATTAAATG+AGG | - | chr1_4:21201880-21201899 | Msa0155640:intron | 40.0% | |
| TCCTCATTTAATACTGGTGG+TGG | + | chr1_4:21201884-21201903 | None:intergenic | 40.0% | |
| CTGTCCTCATTTAATACTGG+TGG | + | chr1_4:21201887-21201906 | None:intergenic | 40.0% | |
| GGACAGTAAGAATGAAGGTA+AGG | - | chr1_4:21201901-21201920 | Msa0155640:intron | 40.0% | |
| ! | TTGGCTTGAGAAATCAGAAG+AGG | + | chr1_4:21202384-21202403 | None:intergenic | 40.0% |
| CACGCCAATATCTGTGTTAT+GGG | + | chr1_4:21202455-21202474 | None:intergenic | 40.0% | |
| ACACGCCAATATCTGTGTTA+TGG | + | chr1_4:21202456-21202475 | None:intergenic | 40.0% | |
| TCAGCTGTCTCAATTCTACA+AGG | - | chr1_4:21202646-21202665 | Msa0155640:CDS | 40.0% | |
| CTGTCTCAATTCTACAAGGA+AGG | - | chr1_4:21202650-21202669 | Msa0155640:CDS | 40.0% | |
| !! | CTACTTGACATTGATGATGG+AGG | - | chr1_4:21202906-21202925 | Msa0155640:CDS | 40.0% |
| ! | AGGAAAATGCTAAGGAGTGT+TGG | + | chr1_4:21202952-21202971 | None:intergenic | 40.0% |
| ATTTCTGTTTGGACTTCGGA+CGG | + | chr1_4:21203035-21203054 | None:intergenic | 40.0% | |
| !! | CATCACCGTTGATTTCTGTT+TGG | + | chr1_4:21203046-21203065 | None:intergenic | 40.0% |
| CTCTTGATTCCGGTGATGAT+GGG | - | chr1_4:21199531-21199550 | Msa0155640:intron | 45.0% | |
| ! | TCTTGATTCCGGTGATGATG+GGG | - | chr1_4:21199532-21199551 | Msa0155640:intron | 45.0% |
| GTTCTCCCAAACAATCTCAC+TGG | + | chr1_4:21199725-21199744 | None:intergenic | 45.0% | |
| TCTCCAATTGACACCGTTGA+AGG | + | chr1_4:21200292-21200311 | None:intergenic | 45.0% | |
| AGTGTCCCAGAAGGATTAAG+GGG | - | chr1_4:21200323-21200342 | Msa0155640:intron | 45.0% | |
| ! | GCAGTTACGGACTTTGCTAT+TGG | + | chr1_4:21200922-21200941 | None:intergenic | 45.0% |
| CGCAGTCACAATTGCAGTTA+CGG | + | chr1_4:21200935-21200954 | None:intergenic | 45.0% | |
| TTCTACAAGGAAGGTCCCTT+TGG | - | chr1_4:21202659-21202678 | Msa0155640:CDS | 45.0% | |
| AATCACCAAGACCAGCCAAA+GGG | + | chr1_4:21202677-21202696 | None:intergenic | 45.0% | |
| TAATCACCAAGACCAGCCAA+AGG | + | chr1_4:21202678-21202697 | None:intergenic | 45.0% | |
| !! | TTGGCTGGTCTTGGTGATTA+TGG | - | chr1_4:21202678-21202697 | Msa0155640:intron | 45.0% |
| ! | GGTCTTGGTGATTATGGTGA+TGG | - | chr1_4:21202684-21202703 | Msa0155640:intron | 45.0% |
| GGCAAAGATACAGTTGCACT+AGG | - | chr1_4:21202705-21202724 | Msa0155640:intron | 45.0% | |
| AGTTGCACTAGGACAGTATC+TGG | - | chr1_4:21202716-21202735 | Msa0155640:intron | 45.0% | |
| !!! | TTTTGCCTTTGGTTTGGGAG+TGG | - | chr1_4:21202761-21202780 | Msa0155640:intron | 45.0% |
| TATCACCACTCCCAAACCAA+AGG | + | chr1_4:21202769-21202788 | None:intergenic | 45.0% | |
| ! | GATTCCATGCTCTAAATGCG+TGG | - | chr1_4:21202991-21203010 | Msa0155640:exon | 45.0% |
| !!! | TTTTTATTGTTTTTAATTTA+AGG | - | chr1_4:21199279-21199298 | Msa0155640:three_prime_UTR | 5.0% |
| !!! | TTTTATTGTTTTTAATTTAA+GGG | - | chr1_4:21199280-21199299 | Msa0155640:three_prime_UTR | 5.0% |
| GCTCTTGATTCCGGTGATGA+TGG | - | chr1_4:21199530-21199549 | Msa0155640:intron | 50.0% | |
| !! | CTTGATTCCGGTGATGATGG+GGG | - | chr1_4:21199533-21199552 | Msa0155640:intron | 50.0% |
| CTTCAATCCCCCATCATCAC+CGG | + | chr1_4:21199543-21199562 | None:intergenic | 50.0% | |
| ! | CTCACTGGCACTTTTGCGTA+CGG | + | chr1_4:21199710-21199729 | None:intergenic | 50.0% |
| GCACTAGGACAGTATCTGGA+TGG | - | chr1_4:21202720-21202739 | Msa0155640:intron | 50.0% | |
| ! | TGAGCCACGCATTTAGAGCA+TGG | + | chr1_4:21202998-21203017 | None:intergenic | 50.0% |
| TGCGTCCATAGTGTCCCAGA+AGG | - | chr1_4:21200314-21200333 | Msa0155640:intron | 55.0% | |
| !! | GCTTGCCATTGGGTTGACTG+TGG | - | chr1_4:21201381-21201400 | Msa0155640:intron | 55.0% |
| !! | TGCCATTGGGTTGACTGTGG+AGG | - | chr1_4:21201384-21201403 | Msa0155640:intron | 55.0% |
| CACCTCCACAGTCAACCCAA+TGG | + | chr1_4:21201389-21201408 | None:intergenic | 55.0% | |
| !! | CATTGGGTTGACTGTGGAGG+TGG | - | chr1_4:21201387-21201406 | Msa0155640:intron | 55.0% |
| ACAAGGAAGGTCCCTTTGGC+TGG | - | chr1_4:21202663-21202682 | Msa0155640:CDS | 55.0% | |
| !! | AAGGTCCCTTTGGCTGGTCT+TGG | - | chr1_4:21202669-21202688 | Msa0155640:intron | 55.0% |
| !!! | GCTTTTTCTGGAGCAGGGGC+TGG | + | chr1_4:21201243-21201262 | None:intergenic | 60.0% |
| GTCAGAGCAGCCCATGCCAA+TGG | + | chr1_4:21201825-21201844 | None:intergenic | 60.0% | |
| TGGAGCAGGGGCTGGAGCTT+TGG | + | chr1_4:21201235-21201254 | None:intergenic | 65.0% | |
| ! | GGCATGGGCTGCTCTGACCT+TGG | - | chr1_4:21201827-21201846 | Msa0155640:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 21198977 | 21203134 | 21198977 | ID=Msa0155640;Name=Msa0155640 |
| chr1_4 | mRNA | 21198977 | 21203134 | 21198977 | ID=Msa0155640-mRNA-1;Parent=Msa0155640;Name=Msa0155640-mRNA-1;_AED=0.06;_eAED=0.06;_QI=137|0.8|0.83|1|1|1|6|340|246 |
| chr1_4 | exon | 21198977 | 21199461 | 21198977 | ID=Msa0155640-mRNA-1:exon:7671;Parent=Msa0155640-mRNA-1 |
| chr1_4 | exon | 21200163 | 21200292 | 21200163 | ID=Msa0155640-mRNA-1:exon:7670;Parent=Msa0155640-mRNA-1 |
| chr1_4 | exon | 21200604 | 21200729 | 21200604 | ID=Msa0155640-mRNA-1:exon:7669;Parent=Msa0155640-mRNA-1 |
| chr1_4 | exon | 21200820 | 21200900 | 21200820 | ID=Msa0155640-mRNA-1:exon:7668;Parent=Msa0155640-mRNA-1 |
| chr1_4 | exon | 21202524 | 21202682 | 21202524 | ID=Msa0155640-mRNA-1:exon:7667;Parent=Msa0155640-mRNA-1 |
| chr1_4 | exon | 21202898 | 21203134 | 21202898 | ID=Msa0155640-mRNA-1:exon:7666;Parent=Msa0155640-mRNA-1 |
| chr1_4 | five_prime_UTR | 21202998 | 21203134 | 21202998 | ID=Msa0155640-mRNA-1:five_prime_utr;Parent=Msa0155640-mRNA-1 |
| chr1_4 | CDS | 21202898 | 21202997 | 21202898 | ID=Msa0155640-mRNA-1:cds;Parent=Msa0155640-mRNA-1 |
| chr1_4 | CDS | 21202524 | 21202682 | 21202524 | ID=Msa0155640-mRNA-1:cds;Parent=Msa0155640-mRNA-1 |
| chr1_4 | CDS | 21200820 | 21200900 | 21200820 | ID=Msa0155640-mRNA-1:cds;Parent=Msa0155640-mRNA-1 |
| chr1_4 | CDS | 21200604 | 21200729 | 21200604 | ID=Msa0155640-mRNA-1:cds;Parent=Msa0155640-mRNA-1 |
| chr1_4 | CDS | 21200163 | 21200292 | 21200163 | ID=Msa0155640-mRNA-1:cds;Parent=Msa0155640-mRNA-1 |
| chr1_4 | CDS | 21199317 | 21199461 | 21199317 | ID=Msa0155640-mRNA-1:cds;Parent=Msa0155640-mRNA-1 |
| chr1_4 | three_prime_UTR | 21198977 | 21199316 | 21198977 | ID=Msa0155640-mRNA-1:three_prime_utr;Parent=Msa0155640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
