Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306570 | XP_013467030.1 | 92.632 | 190 | 13 | 1 | 1 | 189 | 1 | 190 | 1.54e-119 | 350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306570 | A0A072VSF9 | 92.632 | 190 | 13 | 1 | 1 | 189 | 1 | 190 | 7.35e-120 | 350 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064580 | Msa0306570 | 0.932960 | 3.875939e-95 | -8.615850e-47 |
| Msa0155640 | Msa0306570 | 0.913318 | 7.071898e-84 | -8.615850e-47 |
| Msa0306570 | Msa0570700 | 0.803264 | 3.787606e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306570 | MtrunA17_Chr1g0166401 | 92.632 | 190 | 13 | 1 | 1 | 189 | 1 | 190 | 1.42e-123 | 350 |
| Msa0306570 | MtrunA17_Chr1g0190821 | 48.824 | 170 | 81 | 3 | 5 | 173 | 8 | 172 | 8.20e-53 | 169 |
| Msa0306570 | MtrunA17_Chr7g0273981 | 36.264 | 182 | 106 | 4 | 1 | 172 | 1 | 182 | 2.61e-31 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306570 | AT4G14746.1 | 53.459 | 159 | 67 | 3 | 11 | 167 | 13 | 166 | 3.91e-56 | 179 |
| Msa0306570 | AT4G14746.2 | 52.427 | 103 | 43 | 2 | 11 | 112 | 13 | 110 | 3.64e-30 | 111 |
Find 75 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCTGGTCTTGGTGATTA+TGG | 0.232638 | 2_3:+65456704 | Msa0306570:CDS |
| CCTTTGCTTTCTCCTATCTT+TGG | 0.233883 | 2_3:+65453189 | Msa0306570:CDS |
| TGGAGCAGGGGCTGGAGCTT+TGG | 0.238264 | 2_3:-65455258 | None:intergenic |
| CTAATCTAATCAAATTAAAA+AGG | 0.285577 | 2_3:-65456995 | None:intergenic |
| AAATGTAACATAAATTTGTT+AGG | 0.328125 | 2_3:-65453004 | None:intergenic |
| TTACTGTCCTCATTTAATAC+TGG | 0.329549 | 2_3:-65455914 | None:intergenic |
| TTTGGGACTGGTGATAATAT+AGG | 0.334543 | 2_3:+65456799 | Msa0306570:CDS |
| GGGAAAGTACTATTCTTAGA+AGG | 0.343373 | 2_3:-65453470 | None:intergenic |
| AAGGTCCCTTTGGCTGGTCT+TGG | 0.360445 | 2_3:+65456695 | Msa0306570:CDS |
| TGGAAGAAAGCTCTTGATTC+CGG | 0.360879 | 2_3:+65453518 | Msa0306570:CDS |
| GGCATGGGCTGCTCTGACCT+TGG | 0.369624 | 2_3:+65455854 | Msa0306570:CDS |
| TTGGGACTGGTGATAATATA+GGG | 0.374283 | 2_3:+65456800 | Msa0306570:CDS |
| CATCACCGTTGATTTCTGTT+TGG | 0.375158 | 2_3:-65457069 | None:intergenic |
| TCAACTATCTCAAATTATAA+TGG | 0.378090 | 2_3:+65457129 | Msa0306570:three_prime_UTR |
| CTAGTACAAAAGAGATATTA+TGG | 0.385797 | 2_3:+65456858 | Msa0306570:three_prime_UTR |
| TTCTACAAGGAAGGTCCCTT+TGG | 0.401052 | 2_3:+65456685 | Msa0306570:CDS |
| AGTTGCACTAGGACAGTATC+TGG | 0.416182 | 2_3:+65456742 | Msa0306570:CDS |
| AAGAGTTACAAACCAAAGAT+AGG | 0.417790 | 2_3:-65453201 | None:intergenic |
| ACCATCAAATATTGATGCAT+TGG | 0.419728 | 2_3:-65455297 | None:intergenic |
| CTCTTGATTCCGGTGATGAT+GGG | 0.428084 | 2_3:+65453528 | Msa0306570:CDS |
| GCTCTTGATTCCGGTGATGA+TGG | 0.432005 | 2_3:+65453527 | Msa0306570:CDS |
| ACAAGGAAGGTCCCTTTGGC+TGG | 0.436384 | 2_3:+65456689 | Msa0306570:CDS |
| TCCAATGCATCAATATTTGA+TGG | 0.436463 | 2_3:+65455296 | Msa0306570:CDS |
| ATTCTACTTGACATTGATGA+TGG | 0.449108 | 2_3:+65456929 | Msa0306570:three_prime_UTR |
| TTTGAATTTGAAGGTTCCAT+TGG | 0.449421 | 2_3:+65455833 | Msa0306570:intron |
| TGATCACACTCACATTCAAA+AGG | 0.452842 | 2_3:-65453491 | None:intergenic |
| ATATAAATGAATGACTAGTT+AGG | 0.458716 | 2_3:-65453036 | None:intergenic |
| AGGAAAATGCTAAGGAGTGT+TGG | 0.471318 | 2_3:-65456975 | None:intergenic |
| TTTGAATGTGAGTGTGATCA+TGG | 0.477887 | 2_3:+65453494 | Msa0306570:CDS |
| TAGGAGAAAGCAAAGGAGAA+AGG | 0.478068 | 2_3:-65453182 | None:intergenic |
| CATTGGGTTGACTGTGGAGG+TGG | 0.494026 | 2_3:+65455413 | Msa0306570:CDS |
| ATTTGAAGGTTCCATTGGCA+TGG | 0.505978 | 2_3:+65455838 | Msa0306570:intron |
| GTTGATTTCTGTTTGGACTT+CGG | 0.520230 | 2_3:-65457062 | None:intergenic |
| CTGTCCTCATTTAATACTGG+TGG | 0.531289 | 2_3:-65455911 | None:intergenic |
| TCCTCATTTAATACTGGTGG+TGG | 0.537440 | 2_3:-65455908 | None:intergenic |
| GGTCTTGGTGATTATGGTGA+TGG | 0.541288 | 2_3:+65456710 | Msa0306570:CDS |
| AATGTGAGTGTGATCATGGT+TGG | 0.543163 | 2_3:+65453498 | Msa0306570:CDS |
| AGATGATGTATGCAAAGAAG+TGG | 0.544147 | 2_3:+65453424 | Msa0306570:intron |
| AGTTTGACATTGATATTCCA+AGG | 0.549867 | 2_3:-65455871 | None:intergenic |
| TTTGAAGGTTCCATTGGCAT+GGG | 0.552267 | 2_3:+65455839 | Msa0306570:intron |
| GATCACACTCACATTCAAAA+GGG | 0.561000 | 2_3:-65453490 | None:intergenic |
| GGACAGTAAGAATGAAGGTA+AGG | 0.562725 | 2_3:+65455928 | Msa0306570:CDS |
| TGCCATTGGGTTGACTGTGG+AGG | 0.564067 | 2_3:+65455410 | Msa0306570:CDS |
| AAGGAAAGGTAGTGACATTG+AGG | 0.565068 | 2_3:-65455499 | None:intergenic |
| GTCAGAGCAGCCCATGCCAA+TGG | 0.565591 | 2_3:-65455849 | None:intergenic |
| AATGAGGACAGTAAGAATGA+AGG | 0.572553 | 2_3:+65455923 | Msa0306570:CDS |
| CTGTCTCAATTCTACAAGGA+AGG | 0.575645 | 2_3:+65456676 | Msa0306570:CDS |
| TCAGCTGTCTCAATTCTACA+AGG | 0.577319 | 2_3:+65456672 | Msa0306570:intron |
| TCTTGATTCCGGTGATGATG+GGG | 0.578509 | 2_3:+65453529 | Msa0306570:CDS |
| ATCTTACATTCTCTGAAGCA+AGG | 0.581134 | 2_3:-65455518 | None:intergenic |
| ATTTCTGTTTGGACTTCGGA+CGG | 0.584237 | 2_3:-65457058 | None:intergenic |
| TGAGCCACGCATTTAGAGCA+TGG | 0.586849 | 2_3:-65457021 | None:intergenic |
| GCTTGCCATTGGGTTGACTG+TGG | 0.588618 | 2_3:+65455407 | Msa0306570:intron |
| TACTTGACATTGATGATGGA+GGG | 0.599003 | 2_3:+65456933 | Msa0306570:three_prime_UTR |
| AATTAACAGAATTCAGATGT+GGG | 0.601105 | 2_3:-65453071 | None:intergenic |
| CTTGATTCCGGTGATGATGG+GGG | 0.605222 | 2_3:+65453530 | Msa0306570:CDS |
| CTACTTGACATTGATGATGG+AGG | 0.608480 | 2_3:+65456932 | Msa0306570:three_prime_UTR |
| TAATTAACAGAATTCAGATG+TGG | 0.611816 | 2_3:-65453072 | None:intergenic |
| AAAGAAGTGGAATGTGGGAA+AGG | 0.615099 | 2_3:+65453437 | Msa0306570:CDS |
| AATCACCAAGACCAGCCAAA+GGG | 0.616260 | 2_3:-65456700 | None:intergenic |
| GCACTAGGACAGTATCTGGA+TGG | 0.616572 | 2_3:+65456746 | Msa0306570:CDS |
| TATGCAAAGAAGTGGAATGT+GGG | 0.618938 | 2_3:+65453432 | Msa0306570:CDS |
| TATCACCAGTCCCAAACCAA+AGG | 0.623066 | 2_3:-65456792 | None:intergenic |
| ACATTCTCTGAAGCAAGGAA+AGG | 0.624340 | 2_3:-65455513 | None:intergenic |
| TAATCACCAAGACCAGCCAA+AGG | 0.642532 | 2_3:-65456701 | None:intergenic |
| TCCACCACCAGTATTAAATG+AGG | 0.645408 | 2_3:+65455907 | Msa0306570:CDS |
| TTACAATTAGGAATGATGCA+AGG | 0.645535 | 2_3:-65453566 | None:intergenic |
| GTATGCAAAGAAGTGGAATG+TGG | 0.652199 | 2_3:+65453431 | Msa0306570:CDS |
| ATAGTGAATGAAGAAAAGCT+AGG | 0.654634 | 2_3:-65456898 | None:intergenic |
| CACCTCCACAGTCAACCCAA+TGG | 0.654789 | 2_3:-65455412 | None:intergenic |
| GATTCCATGCTCTAAATGCG+TGG | 0.656761 | 2_3:+65457017 | Msa0306570:three_prime_UTR |
| CCAAAGATAGGAGAAAGCAA+AGG | 0.659740 | 2_3:-65453189 | None:intergenic |
| GGCAAAGATACAGTTGCACT+AGG | 0.659862 | 2_3:+65456731 | Msa0306570:CDS |
| GAAGTCCAAACAGAAATCAA+CGG | 0.674086 | 2_3:+65457064 | Msa0306570:three_prime_UTR |
| ATTAACAGAATTCAGATGTG+GGG | 0.687788 | 2_3:-65453070 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTGTTAATATAGTATA+TGG | + | chr2_3:65453348-65453367 | Msa0306570:intron | 10.0% |
| !! | TATCTTATATAAAAATAGTT+TGG | + | chr2_3:65454189-65454208 | Msa0306570:intron | 10.0% |
| !! | TTTATCTTAAATTTGTAATA+AGG | + | chr2_3:65454668-65454687 | Msa0306570:intron | 10.0% |
| !! | CTAAAAATATTTAATATTCT+TGG | + | chr2_3:65455183-65455202 | Msa0306570:intron | 10.0% |
| !!! | TGATATCATTTTTATTTTTT+AGG | + | chr2_3:65455215-65455234 | Msa0306570:intron | 10.0% |
| !!! | AAATTCTAAAATATTAAGAA+AGG | + | chr2_3:65456068-65456087 | Msa0306570:intron | 10.0% |
| !!! | TCATTTTTTTTTAATTCTTT+TGG | + | chr2_3:65456151-65456170 | Msa0306570:intron | 10.0% |
| !!! | AAATGTAACATAAATTTGTT+AGG | - | chr2_3:65453007-65453026 | None:intergenic | 15.0% |
| !!! | TTACTTTCTAAAGTTAAAAA+TGG | + | chr2_3:65453092-65453111 | Msa0306570:exon | 15.0% |
| !! | TTCTGTTTATGTATAAATTA+TGG | + | chr2_3:65453651-65453670 | Msa0306570:intron | 15.0% |
| !!! | TTTTTATTTTTTAGGTACAT+TGG | + | chr2_3:65455223-65455242 | Msa0306570:intron | 15.0% |
| !!! | AAATTTTACATTTTATGATC+TGG | - | chr2_3:65455606-65455625 | None:intergenic | 15.0% |
| !!! | TTATTTAATTTCTACTACTT+TGG | - | chr2_3:65455799-65455818 | None:intergenic | 15.0% |
| !!! | GATTTTAAATTTGAATTTGA+AGG | + | chr2_3:65455824-65455843 | Msa0306570:intron | 15.0% |
| !! | AATTTAAAAACACATATACA+AGG | - | chr2_3:65456053-65456072 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTCAAATTATCAT+CGG | - | chr2_3:65456510-65456529 | None:intergenic | 15.0% |
| !! | CTAATCTAATCAAATTAAAA+AGG | - | chr2_3:65456998-65457017 | None:intergenic | 15.0% |
| !!! | TTTTAATGTAAAGGAATAGT+AGG | - | chr2_3:65452983-65453002 | None:intergenic | 20.0% |
| !!! | TTGTTAGGTTTTTAATGTAA+AGG | - | chr2_3:65452992-65453011 | None:intergenic | 20.0% |
| !!! | ATATAAATGAATGACTAGTT+AGG | - | chr2_3:65453039-65453058 | None:intergenic | 20.0% |
| !!! | AAAGAGATAAGAGTATATAA+AGG | - | chr2_3:65453230-65453249 | None:intergenic | 20.0% |
| !! | TTACCTTATGAAAATTACTT+GGG | + | chr2_3:65453811-65453830 | Msa0306570:intron | 20.0% |
| !!! | AATAAGTTGAAAACAGATTA+TGG | - | chr2_3:65454131-65454150 | None:intergenic | 20.0% |
| !!! | CTTATTTCTATAATATCTCT+AGG | + | chr2_3:65454145-65454164 | Msa0306570:intron | 20.0% |
| !!! | TTGGCTTTATTTTTTTTTTG+AGG | + | chr2_3:65454208-65454227 | Msa0306570:intron | 20.0% |
| !!! | TTTTTTTTTGAGGAATAGTT+TGG | + | chr2_3:65454218-65454237 | Msa0306570:intron | 20.0% |
| !!! | TTTGTTATTAGTTGATTTCT+TGG | - | chr2_3:65454513-65454532 | None:intergenic | 20.0% |
| !! | AAGAAATCAACTAATAACAA+AGG | + | chr2_3:65454512-65454531 | Msa0306570:intron | 20.0% |
| !!! | CAAGAAAATATCTAGAATTA+AGG | - | chr2_3:65454565-65454584 | None:intergenic | 20.0% |
| !! | TAACTCAAAGATATAACTAT+AGG | + | chr2_3:65455319-65455338 | Msa0306570:intron | 20.0% |
| !! | AACTCAAAGATATAACTATA+GGG | + | chr2_3:65455320-65455339 | Msa0306570:intron | 20.0% |
| !! | CAGTAATTCAATTCATAATT+AGG | + | chr2_3:65455978-65455997 | Msa0306570:intron | 20.0% |
| !!! | TTTTTTTTAATTCTTTTGGC+AGG | + | chr2_3:65456155-65456174 | Msa0306570:intron | 20.0% |
| !!! | TTTTTTCGACAAGTTATTTT+TGG | - | chr2_3:65456429-65456448 | None:intergenic | 20.0% |
| !!! | AAATGAAAGTATTATCACAT+GGG | - | chr2_3:65456641-65456660 | None:intergenic | 20.0% |
| !!! | AAAATGAAAGTATTATCACA+TGG | - | chr2_3:65456642-65456661 | None:intergenic | 20.0% |
| !! | AATTAAAAAGGAAAATGCTA+AGG | - | chr2_3:65456986-65457005 | None:intergenic | 20.0% |
| !! | TCAACTATCTCAAATTATAA+TGG | + | chr2_3:65457129-65457148 | Msa0306570:three_prime_UTR | 20.0% |
| ! | AATTAACAGAATTCAGATGT+GGG | - | chr2_3:65453074-65453093 | None:intergenic | 25.0% |
| ! | TAATTAACAGAATTCAGATG+TGG | - | chr2_3:65453075-65453094 | None:intergenic | 25.0% |
| ! | TATACTCTTATCTCTTTGAT+TGG | + | chr2_3:65453233-65453252 | Msa0306570:intron | 25.0% |
| !! | GTATAAATTATGGACTTGTT+TGG | + | chr2_3:65453661-65453680 | Msa0306570:intron | 25.0% |
| ! | AATAAGCTAAACACACTTTA+GGG | - | chr2_3:65453774-65453793 | None:intergenic | 25.0% |
| ! | AAATAAGCTAAACACACTTT+AGG | - | chr2_3:65453775-65453794 | None:intergenic | 25.0% |
| !! | GTAATTTTCATAAGGTAACA+TGG | - | chr2_3:65453809-65453828 | None:intergenic | 25.0% |
| ! | GTTACCTTATGAAAATTACT+TGG | + | chr2_3:65453810-65453829 | Msa0306570:intron | 25.0% |
| !! | TAAATGGAGATTTTTATGTG+TGG | + | chr2_3:65453960-65453979 | Msa0306570:intron | 25.0% |
| !!! | AATATCTCTAGGATAACTTA+TGG | + | chr2_3:65454156-65454175 | Msa0306570:intron | 25.0% |
| ! | AAAATACACGTTTCGATAAA+CGG | - | chr2_3:65454386-65454405 | None:intergenic | 25.0% |
| ! | AAATCAACTAATAACAAAGG+AGG | + | chr2_3:65454515-65454534 | Msa0306570:intron | 25.0% |
| ! | AGAATTAAGGAAGAAAAGTT+TGG | - | chr2_3:65454552-65454571 | None:intergenic | 25.0% |
| !! | AGATATTTTCTTGATATGCT+TGG | + | chr2_3:65454572-65454591 | Msa0306570:intron | 25.0% |
| !! | CAAATGCTTAATTTTCAACA+TGG | + | chr2_3:65454645-65454664 | Msa0306570:intron | 25.0% |
| ! | GGTTTAATCACACTATAAAA+AGG | + | chr2_3:65454689-65454708 | Msa0306570:intron | 25.0% |
| ! | TCTAACTTTATACAATTGCA+TGG | + | chr2_3:65454878-65454897 | Msa0306570:intron | 25.0% |
| !!! | ACAAAAATAGTTTTACATCG+CGG | - | chr2_3:65455071-65455090 | None:intergenic | 25.0% |
| !!! | TTGGATTTTTTTGCTTTTTC+TGG | - | chr2_3:65455281-65455300 | None:intergenic | 25.0% |
| !!! | TTTTAAGTTAAGCACCTAAT+TGG | + | chr2_3:65455646-65455665 | Msa0306570:intron | 25.0% |
| ! | ACAATGTATCAAAGTTTAAC+TGG | + | chr2_3:65455705-65455724 | Msa0306570:intron | 25.0% |
| ! | AAAATCATTAGTACTGTGAT+TGG | + | chr2_3:65455728-65455747 | Msa0306570:intron | 25.0% |
| ! | ATCCAAATTGCAATTAGATT+AGG | + | chr2_3:65456203-65456222 | Msa0306570:intron | 25.0% |
| ! | ATCCTAATCTAATTGCAATT+TGG | - | chr2_3:65456208-65456227 | None:intergenic | 25.0% |
| !! | TAGATTAGGATTGTTTTCTA+AGG | + | chr2_3:65456217-65456236 | Msa0306570:intron | 25.0% |
| !!! | CCATTTTTGTATGACTTTTA+AGG | - | chr2_3:65456336-65456355 | None:intergenic | 25.0% |
| ! | CCTTAAAAGTCATACAAAAA+TGG | + | chr2_3:65456333-65456352 | Msa0306570:intron | 25.0% |
| ! | CTAGTACAAAAGAGATATTA+TGG | + | chr2_3:65456858-65456877 | Msa0306570:three_prime_UTR | 25.0% |
| ATTAACAGAATTCAGATGTG+GGG | - | chr2_3:65453073-65453092 | None:intergenic | 30.0% | |
| !!! | AAGTCACTTTTAGTTGAAAG+AGG | - | chr2_3:65453162-65453181 | None:intergenic | 30.0% |
| AAGAGTTACAAACCAAAGAT+AGG | - | chr2_3:65453204-65453223 | None:intergenic | 30.0% | |
| TTTCATGAAGGATCATCAAA+AGG | + | chr2_3:65453308-65453327 | Msa0306570:intron | 30.0% | |
| TTCATGAAGGATCATCAAAA+GGG | + | chr2_3:65453309-65453328 | Msa0306570:intron | 30.0% | |
| TTACAATTAGGAATGATGCA+AGG | - | chr2_3:65453569-65453588 | None:intergenic | 30.0% | |
| AGGAAGGAATTCTTACAATT+AGG | - | chr2_3:65453581-65453600 | None:intergenic | 30.0% | |
| TTTATTAGTGTCCAAGAAAG+AGG | - | chr2_3:65453601-65453620 | None:intergenic | 30.0% | |
| ! | AAGCCCAAGTAATTTTCATA+AGG | - | chr2_3:65453817-65453836 | None:intergenic | 30.0% |
| GAAACAGCTTATAACTTACA+TGG | - | chr2_3:65453859-65453878 | None:intergenic | 30.0% | |
| TCAAATCAATCAATCCAACT+AGG | + | chr2_3:65453928-65453947 | Msa0306570:intron | 30.0% | |
| TGTTGATATAGACATAGTGT+TGG | - | chr2_3:65453999-65454018 | None:intergenic | 30.0% | |
| ATATCAACAGAGTAACACTT+AGG | + | chr2_3:65454010-65454029 | Msa0306570:intron | 30.0% | |
| !! | GTGTATTTTTGCAAAGCAAA+AGG | + | chr2_3:65454397-65454416 | Msa0306570:intron | 30.0% |
| TTGAAAAGGTTCATGGTATT+TGG | + | chr2_3:65454473-65454492 | Msa0306570:intron | 30.0% | |
| ! | TCCAAACTTTCATTTGCTTT+TGG | + | chr2_3:65454748-65454767 | Msa0306570:intron | 30.0% |
| TCCAAAAGCAAATGAAAGTT+TGG | - | chr2_3:65454752-65454771 | None:intergenic | 30.0% | |
| AACTTTATACAATTGCATGG+TGG | + | chr2_3:65454881-65454900 | Msa0306570:intron | 30.0% | |
| CTTGATATTGCGAAAAATTG+TGG | - | chr2_3:65455040-65455059 | None:intergenic | 30.0% | |
| ! | CACAATTTTTCGCAATATCA+AGG | + | chr2_3:65455038-65455057 | Msa0306570:intron | 30.0% |
| TCCAATGCATCAATATTTGA+TGG | + | chr2_3:65455296-65455315 | Msa0306570:CDS | 30.0% | |
| ACCATCAAATATTGATGCAT+TGG | - | chr2_3:65455300-65455319 | None:intergenic | 30.0% | |
| ! | AGGGATCTCAATTTTATGTT+TGG | + | chr2_3:65455339-65455358 | Msa0306570:intron | 30.0% |
| TTTGAATTTGAAGGTTCCAT+TGG | + | chr2_3:65455833-65455852 | Msa0306570:intron | 30.0% | |
| AGTTTGACATTGATATTCCA+AGG | - | chr2_3:65455874-65455893 | None:intergenic | 30.0% | |
| TTACTGTCCTCATTTAATAC+TGG | - | chr2_3:65455917-65455936 | None:intergenic | 30.0% | |
| GTAACTAAATAAACCTAGCA+AGG | + | chr2_3:65456102-65456121 | Msa0306570:intron | 30.0% | |
| ! | TAATTCTTTTGGCAGGTATA+TGG | + | chr2_3:65456162-65456181 | Msa0306570:intron | 30.0% |
| ACTATGAGTCAATATCATGT+CGG | + | chr2_3:65456545-65456564 | Msa0306570:intron | 30.0% | |
| ACATGGGAAATATATTGAGT+AGG | - | chr2_3:65456625-65456644 | None:intergenic | 30.0% | |
| !!! | AGCTTTTCATTTTTTGCCTT+TGG | + | chr2_3:65456776-65456795 | Msa0306570:CDS | 30.0% |
| !!! | TTCATTTTTTGCCTTTGGTT+TGG | + | chr2_3:65456781-65456800 | Msa0306570:CDS | 30.0% |
| !!! | TCATTTTTTGCCTTTGGTTT+GGG | + | chr2_3:65456782-65456801 | Msa0306570:CDS | 30.0% |
| ATAGTGAATGAAGAAAAGCT+AGG | - | chr2_3:65456901-65456920 | None:intergenic | 30.0% | |
| ATTCTACTTGACATTGATGA+TGG | + | chr2_3:65456929-65456948 | Msa0306570:three_prime_UTR | 30.0% | |
| AGAAGAAGAACTGCAAAAAG+AGG | - | chr2_3:65453135-65453154 | None:intergenic | 35.0% | |
| AGATGATGTATGCAAAGAAG+TGG | + | chr2_3:65453424-65453443 | Msa0306570:intron | 35.0% | |
| TATGCAAAGAAGTGGAATGT+GGG | + | chr2_3:65453432-65453451 | Msa0306570:CDS | 35.0% | |
| !! | GGGAAAGTACTATTCTTAGA+AGG | - | chr2_3:65453473-65453492 | None:intergenic | 35.0% |
| GATCACACTCACATTCAAAA+GGG | - | chr2_3:65453493-65453512 | None:intergenic | 35.0% | |
| TGATCACACTCACATTCAAA+AGG | - | chr2_3:65453494-65453513 | None:intergenic | 35.0% | |
| TTTGAATGTGAGTGTGATCA+TGG | + | chr2_3:65453494-65453513 | Msa0306570:CDS | 35.0% | |
| AAGAATTCCTTCCTCTTTCT+TGG | + | chr2_3:65453587-65453606 | Msa0306570:intron | 35.0% | |
| AAGGTAACATGGAGAACTTA+TGG | - | chr2_3:65453798-65453817 | None:intergenic | 35.0% | |
| CTCATAAATGCTTATGCTAG+TGG | + | chr2_3:65453899-65453918 | Msa0306570:intron | 35.0% | |
| GCTTATTTGAGCTTATCTAC+TGG | + | chr2_3:65454046-65454065 | Msa0306570:intron | 35.0% | |
| !! | TCCAACATTGATTCCTTCAA+CGG | + | chr2_3:65454302-65454321 | Msa0306570:intron | 35.0% |
| GCAAAGCAAAAGGATTTATG+TGG | + | chr2_3:65454407-65454426 | Msa0306570:intron | 35.0% | |
| TGTGTGATTGAAAAGGTTCA+TGG | + | chr2_3:65454466-65454485 | Msa0306570:intron | 35.0% | |
| TGTATGTCAGTGTGTAATTC+AGG | + | chr2_3:65454597-65454616 | Msa0306570:intron | 35.0% | |
| TTGGCACAACAGAAAAATAC+TGG | - | chr2_3:65454929-65454948 | None:intergenic | 35.0% | |
| ! | GTGGTCAAATTAGTCTGATA+TGG | - | chr2_3:65455021-65455040 | None:intergenic | 35.0% |
| !!! | TTTTTGCTTTTTCTGGAGCA+GGG | - | chr2_3:65455274-65455293 | None:intergenic | 35.0% |
| !!! | TTTTTTGCTTTTTCTGGAGC+AGG | - | chr2_3:65455275-65455294 | None:intergenic | 35.0% |
| !!! | TATGTTTTCTAGCTTGCCAT+TGG | + | chr2_3:65455396-65455415 | Msa0306570:intron | 35.0% |
| !!! | ATGTTTTCTAGCTTGCCATT+GGG | + | chr2_3:65455397-65455416 | Msa0306570:intron | 35.0% |
| !! | ATCTTACATTCTCTGAAGCA+AGG | - | chr2_3:65455521-65455540 | None:intergenic | 35.0% |
| !!! | GACATGATTTTAACTGAGTG+AGG | - | chr2_3:65455550-65455569 | None:intergenic | 35.0% |
| CTGACGGTGTATATGAATTA+AGG | - | chr2_3:65455572-65455591 | None:intergenic | 35.0% | |
| TCTGGTGATTATTACACTGA+CGG | - | chr2_3:65455588-65455607 | None:intergenic | 35.0% | |
| TCACCAAATCACAACCAATT+AGG | - | chr2_3:65455663-65455682 | None:intergenic | 35.0% | |
| AATGAGGACAGTAAGAATGA+AGG | + | chr2_3:65455923-65455942 | Msa0306570:CDS | 35.0% | |
| ! | GGTCACAACTCACAATTTTA+TGG | + | chr2_3:65455949-65455968 | Msa0306570:CDS | 35.0% |
| AAGTTGTTATGTACCTTGCT+AGG | - | chr2_3:65456118-65456137 | None:intergenic | 35.0% | |
| !! | GGTTAATTTTGATGCACTGT+TGG | - | chr2_3:65456389-65456408 | None:intergenic | 35.0% |
| ! | TATATGTGTTGGTGCTTCAT+AGG | - | chr2_3:65456455-65456474 | None:intergenic | 35.0% |
| GTTATGGGTTCTATATGTGT+TGG | - | chr2_3:65456466-65456485 | None:intergenic | 35.0% | |
| AGAACCCATAACACAGATAT+TGG | + | chr2_3:65456474-65456493 | Msa0306570:intron | 35.0% | |
| ATTTCATACTAAAGACGTGC+TGG | - | chr2_3:65456580-65456599 | None:intergenic | 35.0% | |
| ! | TTTGGGACTGGTGATAATAT+AGG | + | chr2_3:65456799-65456818 | Msa0306570:CDS | 35.0% |
| ! | TTGGGACTGGTGATAATATA+GGG | + | chr2_3:65456800-65456819 | Msa0306570:CDS | 35.0% |
| !! | TACTTGACATTGATGATGGA+GGG | + | chr2_3:65456933-65456952 | Msa0306570:three_prime_UTR | 35.0% |
| ! | GTTGATTTCTGTTTGGACTT+CGG | - | chr2_3:65457065-65457084 | None:intergenic | 35.0% |
| GAAGTCCAAACAGAAATCAA+CGG | + | chr2_3:65457064-65457083 | Msa0306570:three_prime_UTR | 35.0% | |
| TAGGAGAAAGCAAAGGAGAA+AGG | - | chr2_3:65453185-65453204 | None:intergenic | 40.0% | |
| CCAAAGATAGGAGAAAGCAA+AGG | - | chr2_3:65453192-65453211 | None:intergenic | 40.0% | |
| CCTTTGCTTTCTCCTATCTT+TGG | + | chr2_3:65453189-65453208 | Msa0306570:CDS | 40.0% | |
| ! | AGGGTCTTGTGATTTCATGA+AGG | + | chr2_3:65453296-65453315 | Msa0306570:intron | 40.0% |
| GTATGCAAAGAAGTGGAATG+TGG | + | chr2_3:65453431-65453450 | Msa0306570:CDS | 40.0% | |
| AAAGAAGTGGAATGTGGGAA+AGG | + | chr2_3:65453437-65453456 | Msa0306570:CDS | 40.0% | |
| AATGTGAGTGTGATCATGGT+TGG | + | chr2_3:65453498-65453517 | Msa0306570:CDS | 40.0% | |
| TGGAAGAAAGCTCTTGATTC+CGG | + | chr2_3:65453518-65453537 | Msa0306570:CDS | 40.0% | |
| TTAGTGTCCAAGAAAGAGGA+AGG | - | chr2_3:65453597-65453616 | None:intergenic | 40.0% | |
| ! | AAAGTGCCAGTGAGATTGTT+TGG | + | chr2_3:65453713-65453732 | Msa0306570:intron | 40.0% |
| AAGTGCCAGTGAGATTGTTT+GGG | + | chr2_3:65453714-65453733 | Msa0306570:intron | 40.0% | |
| ATTTAGATGCACGACCTAGT+TGG | - | chr2_3:65453945-65453964 | None:intergenic | 40.0% | |
| AACTAGGTCGTGCATCTAAA+TGG | + | chr2_3:65453944-65453963 | Msa0306570:intron | 40.0% | |
| ACACTTAGGCATGTTTGCAT+TGG | + | chr2_3:65454024-65454043 | Msa0306570:intron | 40.0% | |
| ACCGTTGAAGGAATCAATGT+TGG | - | chr2_3:65454306-65454325 | None:intergenic | 40.0% | |
| ! | ATTCCTTCAACGGTGTCAAT+TGG | + | chr2_3:65454312-65454331 | Msa0306570:intron | 40.0% |
| !! | TTAATCCTTCTGGGACACTA+TGG | - | chr2_3:65454348-65454367 | None:intergenic | 40.0% |
| ATAGTGTCCCAGAAGGATTA+AGG | + | chr2_3:65454347-65454366 | Msa0306570:intron | 40.0% | |
| TAGTGTCCCAGAAGGATTAA+GGG | + | chr2_3:65454348-65454367 | Msa0306570:intron | 40.0% | |
| ATCAACCCCTTAATCCTTCT+GGG | - | chr2_3:65454357-65454376 | None:intergenic | 40.0% | |
| TATCAACCCCTTAATCCTTC+TGG | - | chr2_3:65454358-65454377 | None:intergenic | 40.0% | |
| GCATCTGTGTGTGATTGAAA+AGG | + | chr2_3:65454459-65454478 | Msa0306570:intron | 40.0% | |
| ACACACAACTAAACCAGCAA+TGG | + | chr2_3:65454823-65454842 | Msa0306570:intron | 40.0% | |
| AAACGTTGCATTTCCATTGC+TGG | - | chr2_3:65454839-65454858 | None:intergenic | 40.0% | |
| GATATGGTTACAGTTGTGAC+TGG | - | chr2_3:65455005-65455024 | None:intergenic | 40.0% | |
| !!! | TTTTGCTTTTTCTGGAGCAG+GGG | - | chr2_3:65455273-65455292 | None:intergenic | 40.0% |
| AAGGAAAGGTAGTGACATTG+AGG | - | chr2_3:65455502-65455521 | None:intergenic | 40.0% | |
| !! | ACATTCTCTGAAGCAAGGAA+AGG | - | chr2_3:65455516-65455535 | None:intergenic | 40.0% |
| GCACCTAATTGGTTGTGATT+TGG | + | chr2_3:65455657-65455676 | Msa0306570:intron | 40.0% | |
| ATTTGAAGGTTCCATTGGCA+TGG | + | chr2_3:65455838-65455857 | Msa0306570:intron | 40.0% | |
| TTTGAAGGTTCCATTGGCAT+GGG | + | chr2_3:65455839-65455858 | Msa0306570:intron | 40.0% | |
| TCCACCACCAGTATTAAATG+AGG | + | chr2_3:65455907-65455926 | Msa0306570:CDS | 40.0% | |
| TCCTCATTTAATACTGGTGG+TGG | - | chr2_3:65455911-65455930 | None:intergenic | 40.0% | |
| CTGTCCTCATTTAATACTGG+TGG | - | chr2_3:65455914-65455933 | None:intergenic | 40.0% | |
| GGACAGTAAGAATGAAGGTA+AGG | + | chr2_3:65455928-65455947 | Msa0306570:CDS | 40.0% | |
| ! | TTGGCTTGAGAAATCAGAAG+AGG | - | chr2_3:65456410-65456429 | None:intergenic | 40.0% |
| CACGCCAATATCTGTGTTAT+GGG | - | chr2_3:65456481-65456500 | None:intergenic | 40.0% | |
| ACACGCCAATATCTGTGTTA+TGG | - | chr2_3:65456482-65456501 | None:intergenic | 40.0% | |
| TCAGCTGTCTCAATTCTACA+AGG | + | chr2_3:65456672-65456691 | Msa0306570:intron | 40.0% | |
| CTGTCTCAATTCTACAAGGA+AGG | + | chr2_3:65456676-65456695 | Msa0306570:CDS | 40.0% | |
| !! | CTACTTGACATTGATGATGG+AGG | + | chr2_3:65456932-65456951 | Msa0306570:three_prime_UTR | 40.0% |
| ! | AGGAAAATGCTAAGGAGTGT+TGG | - | chr2_3:65456978-65456997 | None:intergenic | 40.0% |
| ATTTCTGTTTGGACTTCGGA+CGG | - | chr2_3:65457061-65457080 | None:intergenic | 40.0% | |
| !! | CATCACCGTTGATTTCTGTT+TGG | - | chr2_3:65457072-65457091 | None:intergenic | 40.0% |
| CTCTTGATTCCGGTGATGAT+GGG | + | chr2_3:65453528-65453547 | Msa0306570:CDS | 45.0% | |
| ! | TCTTGATTCCGGTGATGATG+GGG | + | chr2_3:65453529-65453548 | Msa0306570:CDS | 45.0% |
| GTTCTCCCAAACAATCTCAC+TGG | - | chr2_3:65453722-65453741 | None:intergenic | 45.0% | |
| TCTCCAATTGACACCGTTGA+AGG | - | chr2_3:65454318-65454337 | None:intergenic | 45.0% | |
| AGTGTCCCAGAAGGATTAAG+GGG | + | chr2_3:65454349-65454368 | Msa0306570:intron | 45.0% | |
| ! | GCAGTTACGGACTTTGCTAT+TGG | - | chr2_3:65454948-65454967 | None:intergenic | 45.0% |
| CGCAGTCACAATTGCAGTTA+CGG | - | chr2_3:65454961-65454980 | None:intergenic | 45.0% | |
| TTCTACAAGGAAGGTCCCTT+TGG | + | chr2_3:65456685-65456704 | Msa0306570:CDS | 45.0% | |
| AATCACCAAGACCAGCCAAA+GGG | - | chr2_3:65456703-65456722 | None:intergenic | 45.0% | |
| TAATCACCAAGACCAGCCAA+AGG | - | chr2_3:65456704-65456723 | None:intergenic | 45.0% | |
| !! | TTGGCTGGTCTTGGTGATTA+TGG | + | chr2_3:65456704-65456723 | Msa0306570:CDS | 45.0% |
| ! | GGTCTTGGTGATTATGGTGA+TGG | + | chr2_3:65456710-65456729 | Msa0306570:CDS | 45.0% |
| GGCAAAGATACAGTTGCACT+AGG | + | chr2_3:65456731-65456750 | Msa0306570:CDS | 45.0% | |
| AGTTGCACTAGGACAGTATC+TGG | + | chr2_3:65456742-65456761 | Msa0306570:CDS | 45.0% | |
| !!! | TTTTGCCTTTGGTTTGGGAC+TGG | + | chr2_3:65456787-65456806 | Msa0306570:CDS | 45.0% |
| TATCACCAGTCCCAAACCAA+AGG | - | chr2_3:65456795-65456814 | None:intergenic | 45.0% | |
| ! | GATTCCATGCTCTAAATGCG+TGG | + | chr2_3:65457017-65457036 | Msa0306570:three_prime_UTR | 45.0% |
| !!! | TTTTTATTGTTTTTAATTTA+AGG | + | chr2_3:65453276-65453295 | Msa0306570:intron | 5.0% |
| !!! | TTTTATTGTTTTTAATTTAA+GGG | + | chr2_3:65453277-65453296 | Msa0306570:intron | 5.0% |
| GCTCTTGATTCCGGTGATGA+TGG | + | chr2_3:65453527-65453546 | Msa0306570:CDS | 50.0% | |
| !! | CTTGATTCCGGTGATGATGG+GGG | + | chr2_3:65453530-65453549 | Msa0306570:CDS | 50.0% |
| CTTCAATCCCCCATCATCAC+CGG | - | chr2_3:65453540-65453559 | None:intergenic | 50.0% | |
| ! | CTCACTGGCACTTTTGCGTA+CGG | - | chr2_3:65453707-65453726 | None:intergenic | 50.0% |
| GCACTAGGACAGTATCTGGA+TGG | + | chr2_3:65456746-65456765 | Msa0306570:CDS | 50.0% | |
| ! | TGAGCCACGCATTTAGAGCA+TGG | - | chr2_3:65457024-65457043 | None:intergenic | 50.0% |
| TGCGTCCATAGTGTCCCAGA+AGG | + | chr2_3:65454340-65454359 | Msa0306570:intron | 55.0% | |
| !! | GCTTGCCATTGGGTTGACTG+TGG | + | chr2_3:65455407-65455426 | Msa0306570:intron | 55.0% |
| !! | TGCCATTGGGTTGACTGTGG+AGG | + | chr2_3:65455410-65455429 | Msa0306570:CDS | 55.0% |
| CACCTCCACAGTCAACCCAA+TGG | - | chr2_3:65455415-65455434 | None:intergenic | 55.0% | |
| !! | CATTGGGTTGACTGTGGAGG+TGG | + | chr2_3:65455413-65455432 | Msa0306570:CDS | 55.0% |
| ACAAGGAAGGTCCCTTTGGC+TGG | + | chr2_3:65456689-65456708 | Msa0306570:CDS | 55.0% | |
| !! | AAGGTCCCTTTGGCTGGTCT+TGG | + | chr2_3:65456695-65456714 | Msa0306570:CDS | 55.0% |
| !!! | GCTTTTTCTGGAGCAGGGGC+TGG | - | chr2_3:65455269-65455288 | None:intergenic | 60.0% |
| GTCAGAGCAGCCCATGCCAA+TGG | - | chr2_3:65455852-65455871 | None:intergenic | 60.0% | |
| TGGAGCAGGGGCTGGAGCTT+TGG | - | chr2_3:65455261-65455280 | None:intergenic | 65.0% | |
| ! | GGCATGGGCTGCTCTGACCT+TGG | + | chr2_3:65455854-65455873 | Msa0306570:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 65452974 | 65457160 | 65452974 | ID=Msa0306570;Name=Msa0306570 |
| chr2_3 | mRNA | 65452974 | 65457160 | 65452974 | ID=Msa0306570-mRNA-1;Parent=Msa0306570;Name=Msa0306570-mRNA-1;_AED=0.06;_eAED=0.06;_QI=137|0.8|0.83|1|1|1|6|340|246 |
| chr2_3 | exon | 65452974 | 65453210 | 65452974 | ID=Msa0306570-mRNA-1:exon:21794;Parent=Msa0306570-mRNA-1 |
| chr2_3 | exon | 65453426 | 65453584 | 65453426 | ID=Msa0306570-mRNA-1:exon:21795;Parent=Msa0306570-mRNA-1 |
| chr2_3 | exon | 65455237 | 65455317 | 65455237 | ID=Msa0306570-mRNA-1:exon:21796;Parent=Msa0306570-mRNA-1 |
| chr2_3 | exon | 65455408 | 65455533 | 65455408 | ID=Msa0306570-mRNA-1:exon:21797;Parent=Msa0306570-mRNA-1 |
| chr2_3 | exon | 65455846 | 65455975 | 65455846 | ID=Msa0306570-mRNA-1:exon:21798;Parent=Msa0306570-mRNA-1 |
| chr2_3 | exon | 65456676 | 65457160 | 65456676 | ID=Msa0306570-mRNA-1:exon:21799;Parent=Msa0306570-mRNA-1 |
| chr2_3 | five_prime_UTR | 65452974 | 65453110 | 65452974 | ID=Msa0306570-mRNA-1:five_prime_utr;Parent=Msa0306570-mRNA-1 |
| chr2_3 | CDS | 65453111 | 65453210 | 65453111 | ID=Msa0306570-mRNA-1:cds;Parent=Msa0306570-mRNA-1 |
| chr2_3 | CDS | 65453426 | 65453584 | 65453426 | ID=Msa0306570-mRNA-1:cds;Parent=Msa0306570-mRNA-1 |
| chr2_3 | CDS | 65455237 | 65455317 | 65455237 | ID=Msa0306570-mRNA-1:cds;Parent=Msa0306570-mRNA-1 |
| chr2_3 | CDS | 65455408 | 65455533 | 65455408 | ID=Msa0306570-mRNA-1:cds;Parent=Msa0306570-mRNA-1 |
| chr2_3 | CDS | 65455846 | 65455975 | 65455846 | ID=Msa0306570-mRNA-1:cds;Parent=Msa0306570-mRNA-1 |
| chr2_3 | CDS | 65456676 | 65456820 | 65456676 | ID=Msa0306570-mRNA-1:cds;Parent=Msa0306570-mRNA-1 |
| chr2_3 | three_prime_UTR | 65456821 | 65457160 | 65456821 | ID=Msa0306570-mRNA-1:three_prime_utr;Parent=Msa0306570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
